Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 26 of 335
Found at i:9663447 original size:18 final size:18
Alignment explanation
Indices: 9663397--9663464 Score: 77
Period size: 18 Copynumber: 3.9 Consensus size: 18
9663387 AACATTTTTT
* *
9663397 TTAAAAATATATCTTAT-
1 TTAAAAATATTTTTTATC
* *
9663414 TTAATAATA-CTTTTATC
1 TTAAAAATATTTTTTATC
9663431 TTAAAAATATTTTTTATC
1 TTAAAAATATTTTTTATC
*
9663449 TCAAAAATATTTTTTA
1 TTAAAAATATTTTTTA
9663465 GAAGCAATGT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
16 5 0.12
17 16 0.37
18 22 0.51
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAAAAATATTTTTTATC
Found at i:9666225 original size:18 final size:20
Alignment explanation
Indices: 9666204--9666248 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
9666194 TATCAAGTTA
9666204 ATAATT-TGATATAA-ATAT
1 ATAATTATGATATAATATAT
* *
9666222 ATAATTATTATTTAATATAT
1 ATAATTATGATATAATATAT
9666242 ATAATTA
1 ATAATTA
9666249 ATTTAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 6 0.26
19 6 0.26
20 11 0.48
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
ATAATTATGATATAATATAT
Found at i:9666252 original size:18 final size:19
Alignment explanation
Indices: 9666218--9666255 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
9666208 TTTGATATAA
9666218 ATATATAATTATTATTTAAT
1 ATATATAATTA-TATTTAAT
9666238 ATATATAATTA-ATTTAAT
1 ATATATAATTATATTTAAT
9666256 TATTTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATATATAATTATATTTAAT
Found at i:9666271 original size:26 final size:29
Alignment explanation
Indices: 9666214--9666280 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 29
9666204 ATAATTTGAT
* *
9666214 ATAA-ATATATAATTATTATTTAATATAT
1 ATAATATATTTAATTATTATTTAATATAC
9666242 ATAAT-TAATTTAATTATT-TTT-ATA-AC
1 ATAATAT-ATTTAATTATTATTTAATATAC
9666268 ATAATATATTTAA
1 ATAATATATTTAA
9666281 ACCGAGTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
26 12 0.35
27 4 0.12
28 8 0.24
29 10 0.29
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (29 bp):
ATAATATATTTAATTATTATTTAATATAC
Found at i:9686589 original size:353 final size:354
Alignment explanation
Indices: 9685937--9686644 Score: 1384
Period size: 353 Copynumber: 2.0 Consensus size: 354
9685927 TTTATTAGTG
9685937 GGGAACTGAAACCTTACAAGAAGACTTGCACTAATACCTACTCAAACTAACCCTGTAATGATTTA
1 GGGAACTGAAACCTTACAAGAAGACTTGCACTAATACCTACTCAAACTAACCCTGTAATGATTTA
9686002 ACTTGTGTGTGATAAGAGGCTTCCTTAGCTGTCTATTTATACTGAAAAACCATATTAATTACCAT
66 ACTTGTGTGTGATAAGAGGCTTCCTTAGCTGTCTATTTATACTGAAAAACCATATTAATTACCAT
9686067 ATATGGAGTTCACATTGTTCCAGCCGTTACTGGCTTTTTGGTAGTTTTAAGCAAAACTCAAGTTT
131 ATATGGAGTTCACATTGTTCCAGCCGTTACTGGCTTTTTGGTAGTTTTAAGCAAAACTCAAGTTT
9686132 AATATGCCCTTTGCTTAACCTTAACCCACTGAAAACACCAAATTACCCCCATAAAACCAGTCGAC
196 AATATGCCCTTTGCTTAACCTTAACCCACTGAAAACACCAAATTACCCCCATAAAACCAGTCGAC
9686197 TATTGGATAACTTGGTAATTCTAAAAACTTTCAATTCATGAAGTTGAGTCATTCACATCTCTAAA
261 TATTGGATAACTTGGTAATTCTAAAAACTTTCAATTCATGAAGTTGAGTCATTCACATCTCTAAA
9686262 AAAGGTAAATAATACCCTTCTAATTTAAT
326 AAAGGTAAATAATACCCTTCTAATTTAAT
*
9686291 GGGAACTGAAACCTTACAAGAAGACTTGCACTAATACCTACTCAAACTAACCCTTTAATGATTTA
1 GGGAACTGAAACCTTACAAGAAGACTTGCACTAATACCTACTCAAACTAACCCTGTAATGATTTA
9686356 ACTTGTGTGTGATTAAGAGGCTTCCTTAGCTGTCTATTTATACTG-AAAACCATATTAATTACCA
66 ACTTGTGTGTGA-TAAGAGGCTTCCTTAGCTGTCTATTTATACTGAAAAACCATATTAATTACCA
9686420 TATATGGAGTTCACATTGTTCCAGCCGTTACTGGC-TTTTGGTAGTTTTAAGCAAAACTCAAGTT
130 TATATGGAGTTCACATTGTTCCAGCCGTTACTGGCTTTTTGGTAGTTTTAAGCAAAACTCAAGTT
9686484 TAATATGCCCTTTGCTTAACCTTAACCCACTGAAAACACCAAATTACCCCCATAAAACCAGTCGA
195 TAATATGCCCTTTGCTTAACCTTAACCCACTGAAAACACCAAATTACCCCCATAAAACCAGTCGA
9686549 CTATTGGATAACTTGGTAATTCTAAAAACTTTCAATTCATGAAGTTGAGTCATTCACATCTCTAA
260 CTATTGGATAACTTGGTAATTCTAAAAACTTTCAATTCATGAAGTTGAGTCATTCACATCTCTAA
9686614 AAAAGGTAAATAATACCCTTCTAATTTAAT
325 AAAAGGTAAATAATACCCTTCTAATTTAAT
9686644 G
1 G
9686645 TAATAAATTG
Statistics
Matches: 352, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
353 190 0.54
354 130 0.37
355 32 0.09
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (354 bp):
GGGAACTGAAACCTTACAAGAAGACTTGCACTAATACCTACTCAAACTAACCCTGTAATGATTTA
ACTTGTGTGTGATAAGAGGCTTCCTTAGCTGTCTATTTATACTGAAAAACCATATTAATTACCAT
ATATGGAGTTCACATTGTTCCAGCCGTTACTGGCTTTTTGGTAGTTTTAAGCAAAACTCAAGTTT
AATATGCCCTTTGCTTAACCTTAACCCACTGAAAACACCAAATTACCCCCATAAAACCAGTCGAC
TATTGGATAACTTGGTAATTCTAAAAACTTTCAATTCATGAAGTTGAGTCATTCACATCTCTAAA
AAAGGTAAATAATACCCTTCTAATTTAAT
Found at i:9690837 original size:30 final size:30
Alignment explanation
Indices: 9690801--9690978 Score: 261
Period size: 30 Copynumber: 5.8 Consensus size: 30
9690791 ACTTTTCTCA
*
9690801 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
9690831 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
9690861 ACTAGCCACTCCACTCTTTTCCACCACCAACTCC
1 ACTAGCCA---CAC-CTTTTCCACCACCAACTCC
9690895 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
9690925 ACTAGCCATTA--TTTTCCACAACCAACTCC
1 ACTAGCCA-CACCTTTTCCACCACCAACTCC
*
9690954 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
9690979 CTTGTACCTA
Statistics
Matches: 135, Mismatches: 6, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
28 1 0.01
29 25 0.19
30 75 0.56
31 4 0.03
33 3 0.02
34 27 0.20
ACGTcount: A:0.26, C:0.48, G:0.03, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:9690898 original size:64 final size:63
Alignment explanation
Indices: 9690806--9690978 Score: 273
Period size: 64 Copynumber: 2.8 Consensus size: 63
9690796 TCTCAACTAG
9690806 CCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACT
1 CCACT-CTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCA-T
9690871 CCACTCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCAT
1 CCACTCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCAT
* * *
9690934 ----TATTTTCCACAACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 CCACTCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
9690979 CTTGTACCTA
Statistics
Matches: 105, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
59 42 0.40
63 1 0.01
64 57 0.54
65 5 0.05
ACGTcount: A:0.26, C:0.49, G:0.03, T:0.22
Consensus pattern (63 bp):
CCACTCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCAT
Found at i:9691557 original size:27 final size:27
Alignment explanation
Indices: 9691527--9691644 Score: 64
Period size: 27 Copynumber: 4.5 Consensus size: 27
9691517 ATTTTAAATT
9691527 CTATATTACGTATATATATATTTTATA
1 CTATATTACGTATATATATATTTTATA
* * * *
9691554 CTATTTTA--TTTATATATCTTTAATA
1 CTATATTACGTATATATATATTTTATA
* ** * * *
9691579 TTATATTATTTATATATTTTTTTTCTA
1 CTATATTACGTATATATATATTTTATA
* * * *
9691606 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTA-CGTATATATATATTTTATA
*
9691632 CTATATTATGTAT
1 CTATATTACGTAT
9691645 GTATTTTTAA
Statistics
Matches: 65, Mismatches: 22, Indels: 9
0.68 0.23 0.09
Matches are distributed among these distances:
25 20 0.31
26 10 0.15
27 35 0.54
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (27 bp):
CTATATTACGTATATATATATTTTATA
Found at i:9691567 original size:25 final size:25
Alignment explanation
Indices: 9691539--9691678 Score: 81
Period size: 25 Copynumber: 5.5 Consensus size: 25
9691529 ATATTACGTA
*
9691539 TATATATATTTTATACTATTTTATT
1 TATATATATTTTATACTATATTATT
* * *
9691564 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATT
* * *
9691589 TATATAT-TTTTTTTCTACATGTTATCT
1 TATATATATTTTATACT--ATATTAT-T
* *
9691616 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATT
* * *
9691642 TATGTAT-TTTTAACACTATATTATG
1 TATATATATTTT-ATACTATATTATT
*
9691667 TACATAT-TTTTA
1 TATATATATTTTA
9691679 ATATTATCAC
Statistics
Matches: 89, Mismatches: 18, Indels: 17
0.72 0.15 0.14
Matches are distributed among these distances:
23 3 0.03
24 11 0.12
25 48 0.54
26 8 0.09
27 9 0.10
29 7 0.08
30 3 0.03
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATT
Found at i:9691595 original size:16 final size:16
Alignment explanation
Indices: 9691543--9691596 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 16
9691533 TACGTATATA
* *
9691543 TATATTTTATACTATT
1 TATATATTATATTATT
*
9691559 T-TAT-TTATATATCTT
1 TATATATTATAT-TATT
9691574 TA-ATATTATATTATT
1 TATATATTATATTATT
9691589 TATATATT
1 TATATATT
9691597 TTTTTTCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 5 0.16
15 14 0.45
16 12 0.39
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATATTATATTATT
Found at i:9691857 original size:16 final size:15
Alignment explanation
Indices: 9691833--9691880 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
9691823 TAATTATTAT
*
9691833 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
9691849 TATTTTAATATTTTA
1 TATTTTAATATTTTA
9691864 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
9691880 T
1 T
9691881 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:9691868 original size:7 final size:8
Alignment explanation
Indices: 9691833--9691884 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
9691823 TAATTATTAT
*
9691833 TATTCTAA
1 TATTTTAA
*
9691841 TATTTTGA
1 TATTTTAA
9691849 TATTTTAA
1 TATTTTAA
9691857 TATTTT-A
1 TATTTTAA
9691864 TATTTTATA
1 TATTTTA-A
*
9691873 TATTTTAT
1 TATTTTAA
9691881 TATT
1 TATT
9691885 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:9701832 original size:70 final size:67
Alignment explanation
Indices: 9701713--9701885 Score: 211
Period size: 70 Copynumber: 2.5 Consensus size: 67
9701703 TTTTCAAGGG
* *
9701713 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATCAACTCATATTGCGA-AG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
9701778 TTTT
64 TTTT
** * *
9701782 CAAAATCAACTCATATTGCAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTAT
1 --AAATCAACTCATATTGC-GAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
9701847 GTTTT
63 GTTTT
** *
9701852 AAATTGACTCATATTGCGAAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAA-GTGAGTTGAGCCT
9701886 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
67 3 0.03
68 27 0.30
70 40 0.44
71 19 0.21
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (67 bp):
AAATCAACTCATATTGCGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATGTT
TT
Found at i:9702006 original size:72 final size:71
Alignment explanation
Indices: 9701885--9702050 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
9701875 GAGTTAAGCC
** * *
9701885 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
9701949 TGAGGTA
65 TGAGGTA
*
9701956 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
9702021 TGAGGTA
65 TGAGGTA
* *
9702028 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
9702051 TTGTTCAAGA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:9702264 original size:140 final size:140
Alignment explanation
Indices: 9701983--9702604 Score: 1087
Period size: 140 Copynumber: 4.5 Consensus size: 140
9701973 TTAATTTCAA
9701983 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
9702048 TTT---TTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
9702110 TCAAAATCAG
131 TCAAAATCAG
9702120 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
9702185 TTTACGTTGTTTAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
* *
9702250 TCAAAGTCAA
131 TCAAAATCAG
*
9702260 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
9702325 TTTACGTTGTTCAAGAATCAACTCATATTGTGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
9702390 TCAAAATCAG
131 TCAAAATCAG
9702400 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
9702465 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
9702529 TCAAAATCAG
131 TCAAAATCAG
*
9702539 CTCATATTGCGAG-GGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTT-AATTTCTATCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
9702601 TCAA
62 TCAA
9702605 AAAAAAAATT
Statistics
Matches: 464, Mismatches: 14, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
137 70 0.15
138 19 0.04
139 49 0.11
140 326 0.70
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:9702463 original size:13 final size:13
Alignment explanation
Indices: 9702445--9702478 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
9702435 CGCTGAGGTA
*
9702445 TTTTCAATTTCTG
1 TTTTCAATTTATG
9702458 TTTTCAATTTATG
1 TTTTCAATTTATG
9702471 TTGTTCAA
1 TT-TTCAA
9702479 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:9702726 original size:71 final size:72
Alignment explanation
Indices: 9702609--9702748 Score: 273
Period size: 71 Copynumber: 2.0 Consensus size: 72
9702599 TTTCAAAAAA
9702609 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
9702674 TGTTTTC
66 TGTTTTC
9702681 AAAATTCAACTCATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
9702745 TGTT
66 TGTT
9702749 CAAAATGAGT
Statistics
Matches: 68, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 46 0.68
72 22 0.32
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:9702757 original size:49 final size:49
Alignment explanation
Indices: 9702703--9702797 Score: 181
Period size: 49 Copynumber: 1.9 Consensus size: 49
9702693 ATATTGCGAG
*
9702703 AATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCAA
1 AATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAA
9702752 AATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
9702798 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (49 bp):
AATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAA
Found at i:9703003 original size:75 final size:75
Alignment explanation
Indices: 9702751--9703104 Score: 455
Period size: 78 Copynumber: 4.7 Consensus size: 75
9702741 TTTCTGTTCA
* *
9702751 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
9702813 ATATTGCGAG
66 ATATTGCGAG
* *
9702823 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC---AAAAAAATCAA
*
9702888 CTCATATTGTGAG
63 CTCATATTGCGAG
*
9702901 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
9702966 ATATTGCGAG
66 ATATTGCGAG
** * * *
9702976 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* *
9703040 GTATTGTGAG
66 ATATTGCGAG
*** * * **
9703050 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCATTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
9703105 TTTCTGCCTT
Statistics
Matches: 252, Mismatches: 21, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
72 42 0.17
73 5 0.02
74 44 0.17
75 63 0.25
76 22 0.09
77 6 0.02
78 70 0.28
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:9703031 original size:153 final size:150
Alignment explanation
Indices: 9702751--9703104 Score: 473
Period size: 153 Copynumber: 2.4 Consensus size: 150
9702741 TTTCTGTTCA
* *
9702751 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* * * *
9702813 ATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAA
66 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTC---A
9702878 AAAAAATCAACTCATATTGTGAG
128 AAAAAATCAACTCATATTGTGAG
*
9702901 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
** *
9702966 ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAA
66 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAA
*
9703030 AAATCAACTCGTATTGTGAG
131 AAATCAACTCATATTGTGAG
*** * * **
9703050 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCATTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
9703105 TTTCTGCCTT
Statistics
Matches: 180, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
149 38 0.21
150 43 0.24
151 35 0.19
152 4 0.02
153 60 0.33
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (150 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAA
AAATCAACTCATATTGTGAG
Found at i:9703198 original size:95 final size:95
Alignment explanation
Indices: 9703026--9703199 Score: 242
Period size: 95 Copynumber: 1.8 Consensus size: 95
9703016 TTCTGTTGTC
* * *
9703026 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
9703091 TTTCCATTTTTCAATTTCTGCCTTTCAAAA
66 TTTCCATCTTTCAATTTCTGCCTTTCAAAA
* * * *
9703121 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
**
9703185 ATTTCTGTCTTTCAA
65 ATTTCCATCTTTCAA
9703200 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
94 2 0.03
95 66 0.97
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (95 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCATCTTTCAATTTCTGCCTTTCAAAA
Found at i:9703228 original size:77 final size:77
Alignment explanation
Indices: 9703098--9703880 Score: 543
Period size: 77 Copynumber: 9.7 Consensus size: 77
9703088 CAATTTCCAT
*
9703098 TTTTCAATTTCTGCCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG
1 TTTTCAATTTCTGTCTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG
**
9703163 CTCACGCGCTGAGCTA
62 CTCACATGCTGAGCTA
* *
9703179 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
** *
9703243 ACACACTGAGGTA
65 ACATGCTGAGCTA
* * * * * * *
9703256 TTTTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGG
1 ----TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG
* *
9703321 GTCACATG-TCGAGGTA
62 CTCACATGCT-GAGCTA
* *** *
9703337 TTTTCAAAATATGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGA-AAGTGAGTTGA
1 TTTTC---A-A----TTTCTG--TCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
9703401 GCCTTGGCTCACGTGCTGAGCTA
55 GCCTTGGCTCACATGCTGAGCTA
* * * * *
9703424 TTTTCAATTTTTTTTTCTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAAT
1 TTTTCAATTTCTGTCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC---CT--T
** * * *
9703489 TTCTGCGAGA-GTTGAGTTGA
60 GGCT-C-ACATGCTGAGCT-A
* * * *
9703509 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAG-
1 -T-TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGC
* * *
9703571 TCACAT-ATCAAGGTA
63 TCACATGCT-GAGCTA
*
9703586 TTTTCAAAATCTTCTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC--AAT-TTC---T---G-T--CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
9703650 AGCCTTTGCTCACGTGCTGAGCTA
54 AGCCTTGGCTCACATGCTGAGCTA
* * *
9703674 TTTTCAATTTCTG-CTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTC
1 TTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
9703738 ACATGCTGAGCTA
65 ACATGCTGAGCTA
* * * *
9703751 TTTTCAATTTCTG-CTTTTCAAAAGAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGTC
1 TTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
* *
9703815 ACACGCTGAGGC-G
65 ACATGCTGA-GCTA
9703828 TTTTCAATTTCTG-CTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
9703881 TCTCGGGCCA
Statistics
Matches: 570, Mismatches: 81, Indels: 108
0.75 0.11 0.14
Matches are distributed among these distances:
75 35 0.06
76 8 0.01
77 225 0.39
78 21 0.04
79 6 0.01
80 2 0.00
81 83 0.15
82 3 0.01
83 4 0.01
84 42 0.07
85 9 0.02
86 7 0.01
87 51 0.09
88 73 0.13
89 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CATGCTGAGCTA
Found at i:9703376 original size:246 final size:241
Alignment explanation
Indices: 9702878--9703817 Score: 974
Period size: 246 Copynumber: 3.8 Consensus size: 241
9702868 TTTTTCAAAA
* ** ** * *
9702878 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCAA
* * * *
9702940 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTG
65 TTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTG
* * * * * *
9703003 AGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCA
130 AGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* * ** * *
9703067 GGTCACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCCTTTC
195 GGTCACATGTCGAGGTATTTTCAAAAT-CTTTTTTCAAGTTCTG--TTTC
*
9703117 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTT
1 -----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTT
9703182 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
61 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
* * * * *
9703247 ACTGAGGTATTTTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTT
126 ACTGAGGTA----TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
9703312 GAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATATGTTTTTC-AGATTCTGTTTTC
187 GAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCT-TTTTTCAAG-TTCTG-TTTC
*
9703369 -AAAAATCAACTCATATTGCGA-AAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
* * * * * *
9703432 TTTTTTTTCTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCG
66 TTCTGTCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-
* * * *
9703496 AGAGTTGAGTTGAGTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAG
124 ACA-CTGAGGT-A-T-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
* * * * **
9703559 TTGAACCTTC-AGTCACATATCAAGGTATTTTCAAAATCTTCTTTTCAAGTTAAGTTTC
185 TTGAGCC-TCGGGTCACATGTCGAGGTATTTTCAAAATCTT-TTTTCAAGTTCTGTTTC
*
9703617 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
* * * * **
9703682 TTCTG-CTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTT-TGCTCACATGCT
66 TTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACT
* * * *
9703745 GAGCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
129 GAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
9703810 GGGTCACA
194 GGGTCACA
9703818 CGCTGAGGCG
Statistics
Matches: 588, Mismatches: 75, Indels: 68
0.80 0.10 0.09
Matches are distributed among these distances:
240 16 0.03
241 3 0.01
242 40 0.07
243 5 0.01
244 35 0.06
245 47 0.08
246 131 0.22
247 2 0.00
248 22 0.04
249 124 0.21
250 51 0.09
251 17 0.03
252 20 0.03
253 75 0.13
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (241 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGA
GGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
GTCACATGTCGAGGTATTTTCAAAATCTTTTTTCAAGTTCTGTTTC
Found at i:9703498 original size:30 final size:30
Alignment explanation
Indices: 9703462--9703523 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
9703452 CAACTCATAT
9703462 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
9703492 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
9703522 TG
1 TG
9703524 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:9703899 original size:75 final size:77
Alignment explanation
Indices: 9703613--9703919 Score: 403
Period size: 77 Copynumber: 4.0 Consensus size: 77
9703603 TCAAGTTAAG
** **
9703613 TTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTT
1 TTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGGCTCACACGCTGAGCTATTT
9703677 TCAATTTCTGCT
66 TCAATTTCTGCT
* ** *
9703689 TTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCACATGCTGAGCTATTT
1 TTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGGCTCACACGCTGAGCTATTT
9703754 TCAATTTCTGCT
66 TCAATTTCTGCT
* *
9703766 TTTCAAAAGAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGG-TCACACGCTGAGGC-GT
1 TTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GGGCTCACACGCTGA-GCTAT
9703829 TTTCAATTTCTGCT
64 TTTCAATTTCTGCT
* * * *
9703843 TTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGC-CACACACTGAGGTCTT
1 TTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GGGCTCACACGCTGAGCTATT
*
9703905 TTCAAATTCTG-T
65 TTCAATTTCTGCT
9703917 TTT
1 TTT
9703920 AATTTCTGCT
Statistics
Matches: 212, Mismatches: 14, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
74 5 0.02
75 57 0.27
76 11 0.05
77 136 0.64
78 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (77 bp):
TTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGGCTCACACGCTGAGCTATTT
TCAATTTCTGCT
Found at i:9704801 original size:30 final size:30
Alignment explanation
Indices: 9704765--9704877 Score: 185
Period size: 30 Copynumber: 3.8 Consensus size: 30
9704755 ACTTTTCTCA
*
9704765 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
9704795 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
9704825 ACTAG-C-CACTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
9704853 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
9704878 CTTGTACCTA
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
28 26 0.34
29 2 0.03
30 49 0.64
ACGTcount: A:0.26, C:0.50, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:9704845 original size:58 final size:59
Alignment explanation
Indices: 9704765--9704877 Score: 201
Period size: 58 Copynumber: 1.9 Consensus size: 59
9704755 ACTTTTCTCA
*
9704765 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACT-CTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
9704825 ACTAGCCACT-TTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
9704878 CTTGTACCTA
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
58 42 0.81
60 10 0.19
ACGTcount: A:0.26, C:0.50, G:0.04, T:0.21
Consensus pattern (59 bp):
ACTAGCCACTCTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:9704847 original size:28 final size:28
Alignment explanation
Indices: 9704765--9704861 Score: 149
Period size: 28 Copynumber: 3.3 Consensus size: 28
9704755 ACTTTTCTCA
9704765 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACT--TTTTCCACCACCAACTCC
*
9704795 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAG-C-CACTTTTTCCACCACCAACTCC
9704825 ACTAGCCACTTTTTCCACCACCAACTCC
1 ACTAGCCACTTTTTCCACCACCAACTCC
9704853 ACTAGCCAC
1 ACTAGCCAC
9704862 ACCTTCTCCA
Statistics
Matches: 63, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
28 30 0.48
29 1 0.02
30 28 0.44
31 1 0.02
32 3 0.05
ACGTcount: A:0.26, C:0.48, G:0.04, T:0.22
Consensus pattern (28 bp):
ACTAGCCACTTTTTCCACCACCAACTCC
Found at i:9705448 original size:27 final size:27
Alignment explanation
Indices: 9705418--9705536 Score: 66
Period size: 27 Copynumber: 4.5 Consensus size: 27
9705408 ATTTTAAATT
9705418 CTATATTACGTATATATATATTTTATA
1 CTATATTACGTATATATATATTTTATA
* * * *
9705445 CTATTTTA--TTTATATATCTTTAATA
1 CTATATTACGTATATATATATTTTATA
* ** * *
9705470 TTATATTATTTATATATATTTTTTTCTA
1 CTATATTACGTATATATA-TATTTTATA
* * * *
9705498 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTA-CGTATATATATATTTTATA
*
9705524 CTATATTATGTAT
1 CTATATTACGTAT
9705537 GTATTTTTAA
Statistics
Matches: 67, Mismatches: 20, Indels: 11
0.68 0.20 0.11
Matches are distributed among these distances:
25 20 0.30
26 5 0.07
27 28 0.42
28 14 0.21
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (27 bp):
CTATATTACGTATATATATATTTTATA
Found at i:9705458 original size:25 final size:25
Alignment explanation
Indices: 9705430--9705570 Score: 90
Period size: 25 Copynumber: 5.5 Consensus size: 25
9705420 ATATTACGTA
*
9705430 TATATATATTTTATACTATTTTATT
1 TATATATATTTTATACTATATTATT
* * *
9705455 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATT
* * *
9705480 TATATATATTTTTTTCTACATGTTATCT
1 TATATATATTTTATACT--ATATTAT-T
* *
9705508 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATT
* * *
9705534 TATGTAT-TTTTAACACTATATTATG
1 TATATATATTTT-ATACTATATTATT
*
9705559 TACATAT-TTTTA
1 TATATATATTTTA
9705571 ATATTATCAC
Statistics
Matches: 90, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
23 3 0.03
24 6 0.07
25 53 0.59
26 2 0.02
27 12 0.13
28 3 0.03
29 2 0.02
30 9 0.10
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATT
Found at i:9705748 original size:16 final size:15
Alignment explanation
Indices: 9705724--9705771 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
9705714 TAATTATTAT
*
9705724 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
9705740 TATTTTAATATTTTA
1 TATTTTAATATTTTA
9705755 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
9705771 T
1 T
9705772 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:9705759 original size:7 final size:8
Alignment explanation
Indices: 9705724--9705775 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
9705714 TAATTATTAT
*
9705724 TATTCTAA
1 TATTTTAA
*
9705732 TATTTTGA
1 TATTTTAA
9705740 TATTTTAA
1 TATTTTAA
9705748 TATTTT-A
1 TATTTTAA
9705755 TATTTTATA
1 TATTTTA-A
*
9705764 TATTTTAT
1 TATTTTAA
9705772 TATT
1 TATT
9705776 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:9706619 original size:6 final size:6
Alignment explanation
Indices: 9706608--9706634 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9706598 TTGTAAACAG
9706608 GGGCAT GGGCAT GGGCAT GGGCAT GGG
1 GGGCAT GGGCAT GGGCAT GGGCAT GGG
9706635 AGAGGCGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.56, T:0.15
Consensus pattern (6 bp):
GGGCAT
Found at i:9707203 original size:12 final size:13
Alignment explanation
Indices: 9707180--9707210 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
9707170 CGCATAGTTT
9707180 AAAAATGTTTTTC
1 AAAAATGTTTTTC
*
9707193 AAAAATGTTTTTG
1 AAAAATGTTTTTC
9707206 AAAAA
1 AAAAA
9707211 GACAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.39
Consensus pattern (13 bp):
AAAAATGTTTTTC
Found at i:9707326 original size:16 final size:16
Alignment explanation
Indices: 9707287--9707328 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
9707277 TAATTTGGTA
*
9707287 AAAATATTTTTTTTCT
1 AAAATATTTTTGTTCT
9707303 AAAA-ATTTTTGTT-T
1 AAAATATTTTTGTTCT
9707317 AGAAATATTTTT
1 A-AAATATTTTT
9707329 TGTCCCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (16 bp):
AAAATATTTTTGTTCT
Found at i:9707330 original size:17 final size:17
Alignment explanation
Indices: 9707287--9707331 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 17
9707277 TAATTTGGTA
9707287 AAAATATTTTTT-TTCT
1 AAAATATTTTTTGTTCT
9707303 AAAA-A-TTTTTGTT-T
1 AAAATATTTTTTGTTCT
9707317 AGAAATATTTTTTGT
1 A-AAATATTTTTTGT
9707332 CCCAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 7 0.28
15 6 0.24
16 5 0.20
17 7 0.28
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (17 bp):
AAAATATTTTTTGTTCT
Found at i:9710362 original size:42 final size:42
Alignment explanation
Indices: 9710315--9710397 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
9710305 GTGGAAATCA
**
9710315 GAGGCCCGAATGTAAGAAGAAATAGTGACGGGAGGGGGAAGT
1 GAGGCCCGAATGTAAGAAGAAATAACGACGGGAGGGGGAAGT
*
9710357 GAGGCCTGAATGTAAGAAGAAATAACGACGGGAGGGGGAAG
1 GAGGCCCGAATGTAAGAAGAAATAACGACGGGAGGGGGAAG
9710398 GAAAAAAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.42, T:0.11
Consensus pattern (42 bp):
GAGGCCCGAATGTAAGAAGAAATAACGACGGGAGGGGGAAGT
Found at i:9714061 original size:71 final size:71
Alignment explanation
Indices: 9713977--9714140 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
9713967 CGATTTGTCT
9713977 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
9714042 CTTTCA
66 CTTTCA
* *
9714048 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
9714113 CTTTCA
66 CTTTCA
9714119 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
9714141 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:9714178 original size:71 final size:70
Alignment explanation
Indices: 9713977--9714174 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
9713967 CGATTTGTCT
* * * * *
9713977 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
9714042 CTTTCA
65 CTTTCA
* * * *
9714048 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
9714113 CTTTCA
65 CTTTCA
* *
9714119 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
9714175 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:9718173 original size:53 final size:53
Alignment explanation
Indices: 9718092--9718242 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
9718082 CTTACACGGT
* *
9718092 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
9718147 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
9718200 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
9718243 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:9720335 original size:60 final size:60
Alignment explanation
Indices: 9720242--9720363 Score: 181
Period size: 60 Copynumber: 2.0 Consensus size: 60
9720232 GATGATATGT
* * *
9720242 TATGTAGAGGATGTCATTGAGAGTTTTTAGGACAATGTGGCGAGCCCTGAAGTTGTAATC
1 TATGTAGAGGATGTCATTGAGAGTTCTTAGGACAATATGGCGAGCCCTGAAGTCGTAATC
* * * *
9720302 TATGTAGAGGTTGTCATTGAGAGTTCTTAGGACAATATGGCGAGGCTTGAAGTCGTCATC
1 TATGTAGAGGATGTCATTGAGAGTTCTTAGGACAATATGGCGAGCCCTGAAGTCGTAATC
9720362 TA
1 TA
9720364 CCCAACATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (60 bp):
TATGTAGAGGATGTCATTGAGAGTTCTTAGGACAATATGGCGAGCCCTGAAGTCGTAATC
Found at i:9730668 original size:2 final size:2
Alignment explanation
Indices: 9730661--9730706 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
9730651 GAAATAGAAG
* *
9730661 AT AT AT AT AG AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9730703 AT AT
1 AT AT
9730707 GTACGGGCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9735601 original size:24 final size:24
Alignment explanation
Indices: 9735553--9735602 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
9735543 TTTATTATTT
*
9735553 TTATATGTTATTTTTTAAATAATA
1 TTATATGTTATTTTTTAAACAATA
9735577 TTATATGTTA-TTTTTAAACACATA
1 TTATATGTTATTTTTTAAACA-ATA
9735601 TT
1 TT
9735603 TAATTTCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (24 bp):
TTATATGTTATTTTTTAAACAATA
Found at i:9738876 original size:47 final size:47
Alignment explanation
Indices: 9738812--9738922 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
9738802 GACATTGAGT
*
9738812 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
9738859 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
9738906 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
9738923 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:9756488 original size:11 final size:11
Alignment explanation
Indices: 9756474--9756527 Score: 64
Period size: 9 Copynumber: 5.3 Consensus size: 11
9756464 TGATTAATTG
9756474 AAATTTAAAAA
1 AAATTTAAAAA
9756485 AAATTT-AAAA
1 AAATTTAAAAA
9756495 AAA--TAAAAA
1 AAATTTAAAAA
9756504 AAA--TAAAAA
1 AAATTTAAAAA
9756513 AAATTTCAAAAA
1 AAATTT-AAAAA
9756525 AAA
1 AAA
9756528 GAGAATGAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.03
9 16 0.41
10 7 0.18
11 7 0.18
12 8 0.21
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (11 bp):
AAATTTAAAAA
Found at i:9757558 original size:112 final size:112
Alignment explanation
Indices: 9757361--9757580 Score: 440
Period size: 112 Copynumber: 2.0 Consensus size: 112
9757351 GACGAAATGG
9757361 GAAACGCTTCCAAGTTTCACTGTATTCATAGTTTCAAACATTCTTGGGCAATTAGAAATTTGTTG
1 GAAACGCTTCCAAGTTTCACTGTATTCATAGTTTCAAACATTCTTGGGCAATTAGAAATTTGTTG
9757426 TGTTACTACTCCAGAGCATAAACAAGGGATCTTTACTGTGATATTTC
66 TGTTACTACTCCAGAGCATAAACAAGGGATCTTTACTGTGATATTTC
9757473 GAAACGCTTCCAAGTTTCACTGTATTCATAGTTTCAAACATTCTTGGGCAATTAGAAATTTGTTG
1 GAAACGCTTCCAAGTTTCACTGTATTCATAGTTTCAAACATTCTTGGGCAATTAGAAATTTGTTG
9757538 TGTTACTACTCCAGAGCATAAACAAGGGATCTTTACTGTGATA
66 TGTTACTACTCCAGAGCATAAACAAGGGATCTTTACTGTGATA
9757581 AATTCTATAT
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 108 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (112 bp):
GAAACGCTTCCAAGTTTCACTGTATTCATAGTTTCAAACATTCTTGGGCAATTAGAAATTTGTTG
TGTTACTACTCCAGAGCATAAACAAGGGATCTTTACTGTGATATTTC
Found at i:9766348 original size:21 final size:20
Alignment explanation
Indices: 9766302--9766349 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
9766292 TTGTCATATG
**
9766302 AATTTCTTTTAAATAATTGTA
1 AATTT-TTTTAAATAATTCAA
*
9766323 TATTTTTTTAAATAAATTCAA
1 AATTTTTTTAAAT-AATTCAA
9766344 AATTTT
1 AATTTT
9766350 AAAAATATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (20 bp):
AATTTTTTTAAATAATTCAA
Found at i:9766369 original size:18 final size:18
Alignment explanation
Indices: 9766348--9766382 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
9766338 ATTCAAAATT
9766348 TTAAAA-ATATATACAAAC
1 TTAAAAGAT-TATACAAAC
9766366 TTAAAAGATTATACAAA
1 TTAAAAGATTATACAAA
9766383 ATTATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.29
Consensus pattern (18 bp):
TTAAAAGATTATACAAAC
Found at i:9770429 original size:13 final size:13
Alignment explanation
Indices: 9770379--9770442 Score: 69
Period size: 13 Copynumber: 4.9 Consensus size: 13
9770369 TAAACCAAAA
*
9770379 TTTTCAAAAACAC
1 TTTTCAAAAGCAC
9770392 TTCTT-AAAAGCAC
1 TT-TTCAAAAGCAC
*
9770405 TTTTTC-ATAGCAC
1 -TTTTCAAAAGCAC
9770418 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
9770431 TTTGCAAAAGCA
1 TTTTCAAAAGCA
9770443 TTGCCAAACT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
12 5 0.12
13 34 0.79
14 4 0.09
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:9790191 original size:12 final size:12
Alignment explanation
Indices: 9790176--9790200 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9790166 TTAATGAAAA
9790176 AATTAAAATATT
1 AATTAAAATATT
9790188 AATTAAAATATT
1 AATTAAAATATT
9790200 A
1 A
9790201 TTACAGTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATTAAAATATT
Found at i:9790370 original size:18 final size:19
Alignment explanation
Indices: 9790347--9790384 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
9790337 TGAAAAAGGA
9790347 TATAAAT-TTTGGAATTTT
1 TATAAATATTTGGAATTTT
*
9790365 TATAAATATTTTGAATTTT
1 TATAAATATTTGGAATTTT
9790384 T
1 T
9790385 TGAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (19 bp):
TATAAATATTTGGAATTTT
Found at i:9790375 original size:20 final size:20
Alignment explanation
Indices: 9790352--9790406 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 20
9790342 AAGGATATAA
9790352 ATTTTGGAA-TTTTTATAAA-T
1 ATTTT-GAATTTTTTA-AAATT
9790372 ATTTTGAATTTTTTGAAAATT
1 ATTTTGAATTTTTT-AAAATT
9790393 ATTTTGAATTTTTT
1 ATTTTGAATTTTTT
9790407 TTTGTAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.09
20 13 0.41
21 16 0.50
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.60
Consensus pattern (20 bp):
ATTTTGAATTTTTTAAAATT
Found at i:9790473 original size:9 final size:9
Alignment explanation
Indices: 9790459--9790515 Score: 60
Period size: 9 Copynumber: 6.3 Consensus size: 9
9790449 ACACCAAACT
9790459 ATTATTCAA
1 ATTATTCAA
*
9790468 ATTATTTAA
1 ATTATTCAA
9790477 ATTATTCAA
1 ATTATTCAA
* **
9790486 GTTATTTGA
1 ATTATTCAA
9790495 ATTATTCAA
1 ATTATTCAA
* *
9790504 GTTATTTAA
1 ATTATTCAA
9790513 ATT
1 ATT
9790516 GTAAAATTCA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (9 bp):
ATTATTCAA
Found at i:9790482 original size:18 final size:18
Alignment explanation
Indices: 9790459--9790515 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
9790449 ACACCAAACT
*
9790459 ATTATTCAAATTATTTAA
1 ATTATTCAAGTTATTTAA
*
9790477 ATTATTCAAGTTATTTGA
1 ATTATTCAAGTTATTTAA
9790495 ATTATTCAAGTTATTTAA
1 ATTATTCAAGTTATTTAA
9790513 ATT
1 ATT
9790516 GTAAAATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (18 bp):
ATTATTCAAGTTATTTAA
Found at i:9793332 original size:31 final size:31
Alignment explanation
Indices: 9793273--9793348 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
9793263 ACACATATAT
*
9793273 ATATACTAAATAAAATAATAAAATAATAATAA
1 ATAT-CTAATTAAAATAATAAAATAATAATAA
* *
9793305 ATATCTTATTAAAAT-ATTAAATAAATAATAA
1 ATATCTAATTAAAATAATAAAAT-AATAATAA
*
9793336 TTATCTAATTAAA
1 ATATCTAATTAAA
9793349 TAACTATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 6 0.16
31 28 0.74
32 4 0.11
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (31 bp):
ATATCTAATTAAAATAATAAAATAATAATAA
Found at i:9793338 original size:23 final size:23
Alignment explanation
Indices: 9793279--9793338 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
9793269 ATATATATAC
9793279 TAAAT-AA-AATAA-TAAAATAA
1 TAAATAAATAATAATTAAAATAA
* * *
9793299 T-AATAAATATCTTATTAAAATAT
1 TAAATAAATA-ATAATTAAAATAA
9793322 TAAATAAATAATAATTA
1 TAAATAAATAATAATTA
9793339 TCTAATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 1 0.03
22 2 0.07
23 13 0.43
24 8 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATAAATAATAATTAAAATAA
Found at i:9794705 original size:2 final size:2
Alignment explanation
Indices: 9794698--9794724 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9794688 TCAAATTAAG
9794698 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
9794725 ACATTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9796134 original size:19 final size:20
Alignment explanation
Indices: 9796100--9796145 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
9796090 CGGAAAATGA
9796100 TTTCTGGAAGATGATTTACT
1 TTTCTGGAAGATGATTTACT
*
9796120 TTTCTGGAA-ATGATTTATT
1 TTTCTGGAAGATGATTTACT
9796139 TTTCTGG
1 TTTCTGG
9796146 TTTTTTGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.22, C:0.09, G:0.20, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAGATGATTTACT
Found at i:9798830 original size:47 final size:47
Alignment explanation
Indices: 9798721--9798831 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
9798711 CCGGGATAAG
*
9798721 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
9798768 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
9798815 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
9798832 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:9806087 original size:47 final size:47
Alignment explanation
Indices: 9805978--9806088 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
9805968 CCGGGATAAG
*
9805978 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
9806025 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
9806072 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
9806089 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:9811239 original size:39 final size:39
Alignment explanation
Indices: 9811174--9811506 Score: 542
Period size: 39 Copynumber: 8.6 Consensus size: 39
9811164 GACTTTAGGC
* *
9811174 CCGGATATAATTCCAGCAGATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
* * **
9811213 CCGGATATAATTTCAGTACATTGCCTGCAAACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
9811252 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
* *
9811291 CCGGATATAATTCCAGCATATTGCCTACGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
* *
9811330 CCGGATATAATTCTAGTACATTGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
9811369 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
9811408 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
*
9811447 CCGGATATAATTCCAGCACATAG-CTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
**
9811485 GTGGATATAATTCCAGCACATT
1 CCGGATATAATTCCAGCACATT
9811507 TAATTATGAT
Statistics
Matches: 272, Mismatches: 22, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
38 34 0.12
39 238 0.88
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
Found at i:9816213 original size:479 final size:479
Alignment explanation
Indices: 9815310--9816217 Score: 1674
Period size: 479 Copynumber: 1.9 Consensus size: 479
9815300 AAGCTCATGT
*
9815310 TGTAATGCCCCGTACCCGAGACCGCTGCCGGAGTCGAACACGAGGTGTTAACGGACTTAATTCAT
1 TGTAACGCCCCGTACCCGAGACCGCTGCCGGAGTCGAACACGAGGTGTTAACGGACTTAATTCAT
* *
9815375 TACTTAAACAGCTTATACAATTCATTTTAAAATTTCCAGACAAGCTGGCTAACTGCATCACAGTC
66 TACTTAAACAACTCATACAATTCATTTTAAAATTTCCAGACAAGCTGGCTAACTGCATCACAGTC
* *
9815440 GCTTTAAAAATCATATCTCGAGTTCTGAAACTTGAAATCCAATTCCGTAAATTTTTCCTAAAACT
131 GCTTTAAAAATCATATCTCAAGTTCCGAAACTTGAAATCCAATTCCGTAAATTTTTCCTAAAACT
9815505 AGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGCAAGTTTTGCAAATTATTCAATTTAGT
196 AGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGCAAGTTTTGCAAATTATTCAATTTAGT
9815570 CCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACACAATCATGCA
261 CCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACACAATCATGCA
* *
9815635 ATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTCTATCTCAGATTTTGTGGTCACGA
326 ATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTATATATCAGATTTTGTGGTCACGA
9815700 AACCACTATTCCGACTAGGCCCAAAATCAGGATATTACAACTCTCCCCCCCTTCAGGGATTTTTG
391 AACCACTATTCCGACTAGGCCCAAAATCAGGATATTACAACTCTCCCCCCCTTCAGGGATTTTTG
9815765 TCCCCGAAAATCTTACCAGCTAAA
456 TCCCCGAAAATCTTACCAGCTAAA
* *
9815789 TGTAACGCCCCGTACTCGAGACCGTTGCCGGAGTCGAACACGAGGTGTTAACGGACTTAATTCAT
1 TGTAACGCCCCGTACCCGAGACCGCTGCCGGAGTCGAACACGAGGTGTTAACGGACTTAATTCAT
9815854 TACTTAAACAACTCATACAATTCATTTTAAAATTTCCAGACAAGCTGGCTAACTGCATCACAGTC
66 TACTTAAACAACTCATACAATTCATTTTAAAATTTCCAGACAAGCTGGCTAACTGCATCACAGTC
* *
9815919 GCTTTAAAAATCATATCTCAAGTTCCGAAA-TTCGAAATCCAATTCCGTAAATTTTTTCTGAAAC
131 GCTTTAAAAATCATATCTCAAGTTCCGAAACTT-GAAATCCAATTCCGTAAATTTTTCCTAAAAC
* *
9815983 TAGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGTAAGTTTTGCAAATTATTCGATTTAG
195 TAGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGCAAGTTTTGCAAATTATTCAATTTAG
9816048 TCCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACACAATCATGC
260 TCCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACACAATCATGC
*
9816113 AATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTATATATCGGATTTTGTGGTCACG
325 AATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTATATATCAGATTTTGTGGTCACG
9816178 AAACCACTATTCCGACTAGGCCCAAAATCAGGATATTACA
390 AAACCACTATTCCGACTAGGCCCAAAATCAGGATATTACA
9816218 CATGTGAACT
Statistics
Matches: 414, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
478 2 0.00
479 412 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (479 bp):
TGTAACGCCCCGTACCCGAGACCGCTGCCGGAGTCGAACACGAGGTGTTAACGGACTTAATTCAT
TACTTAAACAACTCATACAATTCATTTTAAAATTTCCAGACAAGCTGGCTAACTGCATCACAGTC
GCTTTAAAAATCATATCTCAAGTTCCGAAACTTGAAATCCAATTCCGTAAATTTTTCCTAAAACT
AGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGCAAGTTTTGCAAATTATTCAATTTAGT
CCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACACAATCATGCA
ATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTATATATCAGATTTTGTGGTCACGA
AACCACTATTCCGACTAGGCCCAAAATCAGGATATTACAACTCTCCCCCCCTTCAGGGATTTTTG
TCCCCGAAAATCTTACCAGCTAAA
Found at i:9817686 original size:124 final size:124
Alignment explanation
Indices: 9817529--9817774 Score: 474
Period size: 124 Copynumber: 2.0 Consensus size: 124
9817519 CGCTTGCCTT
9817529 AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTGTAAA
1 AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTGTAAA
9817594 TCGGGAAGTTCTTGCAAGCCCAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCGCA
66 TCGGGAAGTTCTTGCAAGCCCAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCGCA
*
9817653 AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTGTATA
1 AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTGTAAA
*
9817718 TCGGGAAGTTCTTGCAAGCCTAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCG
66 TCGGGAAGTTCTTGCAAGCCCAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCG
9817775 TAACACATGC
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 120 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (124 bp):
AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTGTAAA
TCGGGAAGTTCTTGCAAGCCCAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCGCA
Found at i:9818299 original size:20 final size:20
Alignment explanation
Indices: 9818252--9818299 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
9818242 AATAGCAGCC
9818252 CATGTTTTTCACAAAATTTA
1 CATGTTTTTCACAAAATTTA
* * * *
9818272 AATTTTTTTCATAAAATTTT
1 CATGTTTTTCACAAAATTTA
9818292 CATGTTTT
1 CATGTTTT
9818300 CAATTTCGTC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (20 bp):
CATGTTTTTCACAAAATTTA
Found at i:9819875 original size:3 final size:3
Alignment explanation
Indices: 9819867--9819924 Score: 80
Period size: 3 Copynumber: 19.3 Consensus size: 3
9819857 TTAGATGCTC
* * * *
9819867 TCT TCT TCT TCT TCT CCT CCT CCT CCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
9819915 TCT TCT TCT T
1 TCT TCT TCT T
9819925 TTACAAATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (3 bp):
TCT
Found at i:9823950 original size:2 final size:2
Alignment explanation
Indices: 9823943--9823967 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9823933 AGAAGACAAC
9823943 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
9823968 ACATCGATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9825462 original size:18 final size:20
Alignment explanation
Indices: 9825439--9825485 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
9825429 ATTTCTTTTT
9825439 TTTTTTTTAATA-TTCA-TA
1 TTTTTTTTAATATTTCATTA
*
9825457 TTTTTTTTATTATTTCATTA
1 TTTTTTTTAATATTTCATTA
9825477 TATTTTTTT
1 T-TTTTTTT
9825486 GACCCCTGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 11 0.44
19 4 0.16
20 3 0.12
21 7 0.28
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTTTAATATTTCATTA
Found at i:9825640 original size:19 final size:20
Alignment explanation
Indices: 9825616--9825663 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
9825606 TCAAAATATT
9825616 GTAAAAAATA-TTAAAAATA
1 GTAAAAAATATTTAAAAATA
*
9825635 GTAAAAATTATTTAAAAATA
1 GTAAAAAATATTTAAAAATA
9825655 -TACAAAAAT
1 GTA-AAAAAT
9825664 TGTAAAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (20 bp):
GTAAAAAATATTTAAAAATA
Found at i:9825651 original size:30 final size:30
Alignment explanation
Indices: 9825608--9825680 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
9825598 TGACCATATC
*
9825608 AAAATATTGTAAAAAATAT-TAAAAATAGTA
1 AAAATATT-TAAAAAATATACAAAAATAGTA
*
9825638 AAAATTATTT-AAAAATATACAAAAATTGTA
1 AAAA-TATTTAAAAAATATACAAAAATAGTA
9825668 AAGAATATTTAAA
1 AA-AATATTTAAA
9825681 TTACTAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
29 8 0.22
30 21 0.57
31 8 0.22
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (30 bp):
AAAATATTTAAAAAATATACAAAAATAGTA
Found at i:9825771 original size:20 final size:20
Alignment explanation
Indices: 9825739--9825790 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
9825729 TAAAATTGTA
9825739 AAAAAAAAGTTATTAAAAATT
1 AAAAAAAA-TTATTAAAAATT
* * *
9825760 ATAAAATATTATTTAAAATT
1 AAAAAAAATTATTAAAAATT
9825780 AAAAAAAATTA
1 AAAAAAAATTA
9825791 ACTTCAACTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAAAAATTATTAAAAATT
Found at i:9826096 original size:21 final size:19
Alignment explanation
Indices: 9826052--9826121 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 19
9826042 TTTTATGATC
9826052 TTTACAAATTTT-AAATAGTGT
1 TTTAC-AATTTTAAAATA-T-T
* *
9826073 TTTATAATTTTTAATAATTTT
1 TTTACAA-TTTTAA-AATATT
9826094 TTTACAATTTTAAAATATT
1 TTTACAATTTTAAAATATT
9826113 TTTAACAAT
1 TTT-ACAAT
9826122 ATTTTTTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
19 8 0.20
20 13 0.32
21 15 0.37
22 2 0.05
23 3 0.07
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (19 bp):
TTTACAATTTTAAAATATT
Found at i:9826171 original size:20 final size:20
Alignment explanation
Indices: 9825996--9826171 Score: 73
Period size: 20 Copynumber: 8.9 Consensus size: 20
9825986 CCACTTATTC
*
9825996 ACAATTTTTAATA-ATTATTT
1 ACAATTTTTTATATATT-TTT
* * *
9826016 GCAATTTTTTA-ATAAATTTC
1 ACAATTTTTTATAT-ATTTTT
* *
9826036 ACAATTTTTTAT-GATCTTT
1 ACAATTTTTTATATATTTTT
* *
9826055 ACAA-ATTTTAAATAGTGTTTT
1 ACAATTTTTTATATA-T-TTTT
* * *
9826076 ATAATTTTTAATAATTTTTTT
1 ACAATTTTTTAT-ATATTTTT
* *
9826097 ACAA-TTTTAAAATATTTTT
1 ACAATTTTTTATATATTTTT
*
9826116 AACAATATTTT-T-T-TTTTT
1 -ACAATTTTTTATATATTTTT
* * * *
9826134 A-AAGTTCTAATATTTTTTT
1 ACAATTTTTTATATATTTTT
9826153 ACAATTTTTTATATATTTT
1 ACAATTTTTTATATATTTT
9826172 AAATATTCTT
Statistics
Matches: 110, Mismatches: 32, Indels: 28
0.65 0.19 0.16
Matches are distributed among these distances:
16 4 0.04
17 2 0.02
18 11 0.10
19 23 0.21
20 45 0.41
21 18 0.16
22 5 0.05
23 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (20 bp):
ACAATTTTTTATATATTTTT
Found at i:9826177 original size:31 final size:32
Alignment explanation
Indices: 9826142--9826212 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
9826132 TTAAAGTTCT
* *
9826142 AATATTTTTTTACAATTTTTTATATATTTTA-
1 AATATTTTTTTACAATTTTTAATAAATTTTAC
* *
9826173 AATATTCTTTTACGATTTTTAATAAATTTTAC
1 AATATTTTTTTACAATTTTTAATAAATTTTAC
*
9826205 AATCTTTT
1 AATATTTT
9826213 GGTTTAATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
31 27 0.82
32 6 0.18
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.59
Consensus pattern (32 bp):
AATATTTTTTTACAATTTTTAATAAATTTTAC
Found at i:9835890 original size:2 final size:2
Alignment explanation
Indices: 9835883--9835907 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9835873 TTCTTATGTG
9835883 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
9835908 CAAAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9841613 original size:16 final size:17
Alignment explanation
Indices: 9841582--9841614 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9841572 TCTAAAGTAG
9841582 TTTGAATATCAAAATATA
1 TTTGAATA-CAAAATATA
9841600 TTTGAATA-AAAATAT
1 TTTGAATACAAAATAT
9841615 CAGTTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (17 bp):
TTTGAATACAAAATATA
Found at i:9852155 original size:21 final size:21
Alignment explanation
Indices: 9852130--9852170 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9852120 ATATCCATAA
*
9852130 CCAGGATAACTTGGCATGTAG
1 CCAGGATAACCTGGCATGTAG
*
9852151 CCAGGGTAACCTGGCATGTA
1 CCAGGATAACCTGGCATGTA
9852171 TCCATATCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (21 bp):
CCAGGATAACCTGGCATGTAG
Found at i:9853698 original size:4 final size:4
Alignment explanation
Indices: 9853689--9853724 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
9853679 AATGCTGATG
*
9853689 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATAT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
9853725 TGCATAGATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:9854863 original size:10 final size:9
Alignment explanation
Indices: 9854810--9854881 Score: 56
Period size: 10 Copynumber: 7.3 Consensus size: 9
9854800 TTCTAGAAAA
9854810 TTTTT-AAT
1 TTTTTAAAT
*
9854818 TTTTTAACT
1 TTTTTAAAT
9854827 TTCTTTATATAT
1 TT-TTTA-A-AT
9854839 TTTTTAGAAT
1 TTTTTA-AAT
9854849 ATTTTTGAAAT
1 -TTTTT-AAAT
9854860 TTTTATAAAT
1 TTTT-TAAAT
*
9854870 ATTTTAAAT
1 TTTTTAAAT
9854879 TTT
1 TTT
9854882 AAAAAATAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
8 5 0.10
9 11 0.21
10 17 0.33
11 15 0.29
12 4 0.08
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:9854878 original size:19 final size:18
Alignment explanation
Indices: 9854809--9854924 Score: 61
Period size: 19 Copynumber: 5.8 Consensus size: 18
9854799 ATTCTAGAAA
* *
9854809 ATTTTTAATTTTTTAACT
1 ATTTTAAATTTTTTAAAT
*
9854827 TTCTTTATATATTTTTTAGAAT
1 AT-TTTA-A-ATTTTTTA-AAT
9854849 ATTTTTGAAATTTTTATAAAT
1 A-TTTT-AAATTTTT-TAAAT
**
9854870 ATTTTAAATTTTAAAAAAT
1 ATTTTAAATTTT-TTAAAT
* *
9854889 AATTTGAATTTTTTAAAATT
1 ATTTTAAATTTTTT-AAA-T
9854909 ATTTTATATATTTTTT
1 ATTTTA-A-ATTTTTT
9854925 GTTGATAGAG
Statistics
Matches: 74, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
18 1 0.01
19 27 0.36
20 10 0.14
21 19 0.26
22 15 0.20
23 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (18 bp):
ATTTTAAATTTTTTAAAT
Found at i:9854901 original size:20 final size:19
Alignment explanation
Indices: 9854852--9854912 Score: 52
Period size: 20 Copynumber: 3.2 Consensus size: 19
9854842 TTAGAATATT
*
9854852 TTTGAAATTTTT-ATAAATA
1 TTTG-AATTTTTAAAAAATA
* *
9854871 TTTTAAATTTTAAAAAATAA
1 TTTGAATTTTTAAAAAAT-A
* *
9854891 TTTGAATTTTTTAAAATTA
1 TTTGAATTTTTAAAAAATA
9854910 TTT
1 TTT
9854913 TATATATTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
18 6 0.18
19 12 0.36
20 15 0.45
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
TTTGAATTTTTAAAAAATA
Found at i:9855084 original size:32 final size:32
Alignment explanation
Indices: 9855046--9855108 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
9855036 TCGAACTCGA
* *
9855046 AACTCAAATTACT-TATTCGAGTTGACTCGAAT
1 AACTCAAATAACTAGATTCGA-TTGACTCGAAT
9855078 AACTCAAATAACTAGATTCGATTGACTCGAA
1 AACTCAAATAACTAGATTCGATTGACTCGAA
9855109 ATTCGAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 22 0.79
33 6 0.21
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (32 bp):
AACTCAAATAACTAGATTCGATTGACTCGAAT
Found at i:9855276 original size:15 final size:16
Alignment explanation
Indices: 9855250--9855281 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
9855240 ATTGAAATTT
9855250 TAAAATATAAAAAATA
1 TAAAATATAAAAAATA
9855266 TAAAA-ATAAAAAATA
1 TAAAATATAAAAAATA
9855281 T
1 T
9855282 CAACTTGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
TAAAATATAAAAAATA
Found at i:9856651 original size:2 final size:2
Alignment explanation
Indices: 9856644--9856678 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9856634 TTGTGTTTAT
9856644 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9856679 GATACACAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9861265 original size:20 final size:20
Alignment explanation
Indices: 9861240--9861287 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
9861230 TAAATTCTAA
* * *
9861240 AAAGATAAATACATTTAATT
1 AAAGATAAACAAATATAATT
9861260 AAAGATAAACAAATATAATT
1 AAAGATAAACAAATATAATT
9861280 AAA-ATAAA
1 AAAGATAAA
9861288 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAGATAAACAAATATAATT
Found at i:9863244 original size:10 final size:10
Alignment explanation
Indices: 9863231--9863310 Score: 54
Period size: 10 Copynumber: 7.4 Consensus size: 10
9863221 AATATTTAAC
9863231 TAAAATAAAA
1 TAAAATAAAA
9863241 TAAAATAAAA
1 TAAAATAAAA
9863251 TAATAAATAATAA
1 T-A-AAATAA-AA
*
9863264 -ATAATAAAA
1 TAAAATAAAA
* *
9863273 GAAAATAAAG
1 TAAAATAAAA
*
9863283 GAAAATAATAAA
1 TAAAAT-A-AAA
9863295 TAAAAATAAAAA
1 T-AAAAT-AAAA
9863307 TAAA
1 TAAA
9863311 GATTGGGTTG
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
9 2 0.03
10 29 0.50
11 6 0.10
12 12 0.21
13 9 0.16
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:9863260 original size:7 final size:7
Alignment explanation
Indices: 9863248--9863309 Score: 51
Period size: 7 Copynumber: 8.9 Consensus size: 7
9863238 AAATAAAATA
9863248 AAATAAT
1 AAATAAT
9863255 AAATAAT
1 AAATAAT
9863262 AAATAAT
1 AAATAAT
9863269 AAA-AGA-
1 AAATA-AT
*
9863275 AAATAAAGGA
1 AAAT-AA--T
9863285 AAATAAT
1 AAATAAT
9863292 AAATAA-
1 AAATAAT
9863298 AAATAA-
1 AAATAAT
9863304 AAATAA
1 AAATAA
9863310 AGATTGGGTT
Statistics
Matches: 48, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
6 16 0.33
7 25 0.52
8 1 0.02
9 2 0.04
10 4 0.08
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (7 bp):
AAATAAT
Found at i:9863271 original size:27 final size:29
Alignment explanation
Indices: 9863239--9863312 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 29
9863229 ACTAAAATAA
*
9863239 AATAAAATAAAAT-AA-TAAATAATAAAT
1 AATAAAATAAAATAAAGAAAATAATAAAT
*
9863266 AATAAAAGAAAATAAAGGAAAATAATAAAT
1 AATAAAATAAAATAAA-GAAAATAATAAAT
9863296 -A-AAAATAAAAATAAAGA
1 AATAAAAT-AAAATAAAGA
9863313 TTGGGTTGCC
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 12 0.30
28 8 0.20
29 9 0.22
30 11 0.28
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (29 bp):
AATAAAATAAAATAAAGAAAATAATAAAT
Found at i:9863272 original size:37 final size:35
Alignment explanation
Indices: 9863236--9863310 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 35
9863226 TTAACTAAAA
*
9863236 TAAAATAAAATAAAATAATAAATAATAAATAATAAAA
1 TAAAATAAAAGAAAATAATAAATAA-AAAT-ATAAAA
* *
9863273 GAAAATAAAGGAAAATAATAAATAAAAATA-AAAA
1 TAAAATAAAAGAAAATAATAAATAAAAATATAAAA
9863307 TAAA
1 TAAA
9863311 GATTGGGTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 7 0.21
35 1 0.03
36 4 0.12
37 22 0.65
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (35 bp):
TAAAATAAAAGAAAATAATAAATAAAAATATAAAA
Found at i:9863291 original size:30 final size:29
Alignment explanation
Indices: 9863255--9863311 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 29
9863245 ATAAAATAAT
9863255 AAATAATAAATAATAAA-AGAAAATAAAGGA
1 AAATAATAAATAA-AAATA-AAAATAAAGGA
9863285 AAATAATAAATAAAAATAAAAATAAAG
1 AAATAATAAATAAAAATAAAAATAAAG
9863312 ATTGGGTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (29 bp):
AAATAATAAATAAAAATAAAAATAAAGGA
Found at i:9867922 original size:27 final size:27
Alignment explanation
Indices: 9867886--9867948 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
9867876 TGAAATTTTG
9867886 AATATGATCTGTATTGTTTCCTATAACC
1 AATA-GATCTGTATTGTTTCCTATAACC
*
9867914 AGTAGATCTGTATTGTTTCCTATAACC
1 AATAGATCTGTATTGTTTCCTATAACC
9867941 AATAGATC
1 AATAGATC
9867949 ATCAACATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
27 30 0.91
28 3 0.09
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (27 bp):
AATAGATCTGTATTGTTTCCTATAACC
Found at i:9870290 original size:25 final size:25
Alignment explanation
Indices: 9870254--9870388 Score: 161
Period size: 25 Copynumber: 5.5 Consensus size: 25
9870244 GACTTCAGCA
9870254 TGCTCTCTGATTATTAGCACGCCAG
1 TGCTCTCTGATTATTAGCACGCCAG
* *
9870279 TCCTCTCTGATTATTAACACGCCAG
1 TGCTCTCTGATTATTAGCACGCCAG
*
9870304 TGCTCTCTGAATATTAGCACGCCAG
1 TGCTCTCTGATTATTAGCACGCCAG
*****
9870329 TGCTCTCTG---ATTAGCATATTTG
1 TGCTCTCTGATTATTAGCACGCCAG
9870351 TGCTCTCTGA-TATTTAGCACGCCAG
1 TGCTCTCTGATTA-TTAGCACGCCAG
9870376 TGCTCTCTGATTA
1 TGCTCTCTGATTA
9870389 GCACATTTGT
Statistics
Matches: 91, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
22 17 0.19
24 1 0.01
25 71 0.78
26 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.35
Consensus pattern (25 bp):
TGCTCTCTGATTATTAGCACGCCAG
Found at i:9870344 original size:22 final size:23
Alignment explanation
Indices: 9870254--9870428 Score: 131
Period size: 25 Copynumber: 7.4 Consensus size: 23
9870244 GACTTCAGCA
9870254 TGCTCTCTGATTATTAGCACGCCAG
1 TGCTCTCTGA--ATTAGCACGCCAG
* *
9870279 TCCTCTCTGATTATTAACACGCCAG
1 TGCTCTCTGA--ATTAGCACGCCAG
9870304 TGCTCTCTGAATATTAGCACGCCAG
1 TGCTCTCTG-A-ATTAGCACGCCAG
*****
9870329 TGCTCTCTG-ATTAGCATATTTG
1 TGCTCTCTGAATTAGCACGCCAG
9870351 TGCTCTCTGATATTTAGCACGCCAG
1 TGCTCTCTGA-A-TTAGCACGCCAG
****
9870376 TGCTCTCTG-ATTAGCACATTTG
1 TGCTCTCTGAATTAGCACGCCAG
* **
9870398 TGCTCTCTGTA-TAGCACTTCAG
1 TGCTCTCTGAATTAGCACGCCAG
9870420 TGCTCTCTG
1 TGCTCTCTG
9870429 TTCATTAGTG
Statistics
Matches: 124, Mismatches: 21, Indels: 13
0.78 0.13 0.08
Matches are distributed among these distances:
22 51 0.41
23 2 0.02
24 1 0.01
25 69 0.56
26 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.35
Consensus pattern (23 bp):
TGCTCTCTGAATTAGCACGCCAG
Found at i:9870436 original size:47 final size:46
Alignment explanation
Indices: 9870254--9870428 Score: 201
Period size: 47 Copynumber: 3.7 Consensus size: 46
9870244 GACTTCAGCA
* * ****
9870254 TGCTCTCTGATTATTAGCACGCCAGTCCTCTCTGATTATTAACACGCCAG
1 TGCTCTCTGA-TATTAGCACGCCAGTGCTCTCTG---ATTAGCACATTTG
*
9870304 TGCTCTCTGAATATTAGCACGCCAGTGCTCTCTGATTAGCATATTTG
1 TGCTCTCTG-ATATTAGCACGCCAGTGCTCTCTGATTAGCACATTTG
9870351 TGCTCTCTGATATTTAGCACGCCAGTGCTCTCTGATTAGCACATTTG
1 TGCTCTCTGATA-TTAGCACGCCAGTGCTCTCTGATTAGCACATTTG
**
9870398 TGCTCTCTG-TA-TAGCACTTCAGTGCTCTCTG
1 TGCTCTCTGATATTAGCACGCCAGTGCTCTCTG
9870429 TTCATTAGTG
Statistics
Matches: 113, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
44 18 0.16
46 5 0.04
47 58 0.51
50 31 0.27
51 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.35
Consensus pattern (46 bp):
TGCTCTCTGATATTAGCACGCCAGTGCTCTCTGATTAGCACATTTG
Found at i:9881712 original size:8 final size:9
Alignment explanation
Indices: 9881698--9881734 Score: 53
Period size: 8 Copynumber: 4.4 Consensus size: 9
9881688 TGCTTAAGAA
9881698 ATAATATAT
1 ATAATATAT
9881707 -TAATATAT
1 ATAATATAT
9881715 AT-ATATAT
1 ATAATATAT
9881723 AT-ATATAT
1 ATAATATAT
9881731 ATAA
1 ATAA
9881735 AGATTTCTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 24 0.92
9 2 0.08
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (9 bp):
ATAATATAT
Found at i:9881714 original size:2 final size:2
Alignment explanation
Indices: 9881701--9881733 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
9881691 TTAAGAAATA
9881701 AT AT AT -T A- AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9881734 AAGATTTCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9891324 original size:46 final size:45
Alignment explanation
Indices: 9891274--9891449 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 45
9891264 TGGTTGAGCA
9891274 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
9891320 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
9891365 CATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
9891413 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9891450 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:9891430 original size:93 final size:93
Alignment explanation
Indices: 9891271--9891442 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
9891261 GGATGGTTGA
* *
9891271 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
9891336 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
9891364 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGTGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGAG
9891428 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
9891443 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:9904864 original size:16 final size:16
Alignment explanation
Indices: 9904840--9904870 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9904830 ACATTAGGTG
9904840 AAAAATTAAATTAAAT
1 AAAAATTAAATTAAAT
*
9904856 AAAAGTTAAATTAAA
1 AAAAATTAAATTAAA
9904871 ACACAAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AAAAATTAAATTAAAT
Found at i:9906027 original size:38 final size:38
Alignment explanation
Indices: 9905976--9906048 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
9905966 TTACCCCACA
* *
9905976 CTTGCTTTTAAAAGAATCTTTTAACATTCTCCAATCGG
1 CTTGCTCTGAAAAGAATCTTTTAACATTCTCCAATCGG
*
9906014 CTTGCTCTGAAAAGCATCTTTTAACATTCTCCAAT
1 CTTGCTCTGAAAAGAATCTTTTAACATTCTCCAAT
9906049 TGCCAATTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (38 bp):
CTTGCTCTGAAAAGAATCTTTTAACATTCTCCAATCGG
Found at i:9924056 original size:100 final size:100
Alignment explanation
Indices: 9923883--9924083 Score: 393
Period size: 100 Copynumber: 2.0 Consensus size: 100
9923873 CCATGTTACC
9923883 ATTCAATATAACCGTGGAAATTAAACATAGATTAATGGAAAAATATGTCCATTAAGAAGATCTTA
1 ATTCAATATAACCGTGGAAATTAAACATAGATTAATGGAAAAATATGTCCATTAAGAAGATCTTA
9923948 ATAGATATTTTAACAATAATAAATAAAAGTAACAT
66 ATAGATATTTTAACAATAATAAATAAAAGTAACAT
*
9923983 ATTCAATATAACCGTGGAAATTAAACATAGATTAATGGAAAAATATGTCCATTAAGAAGATTTTA
1 ATTCAATATAACCGTGGAAATTAAACATAGATTAATGGAAAAATATGTCCATTAAGAAGATCTTA
9924048 ATAGATATTTTAACAATAATAAATAAAAGTAACAT
66 ATAGATATTTTAACAATAATAAATAAAAGTAACAT
9924083 A
1 A
9924084 CCACGTGGCA
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.30
Consensus pattern (100 bp):
ATTCAATATAACCGTGGAAATTAAACATAGATTAATGGAAAAATATGTCCATTAAGAAGATCTTA
ATAGATATTTTAACAATAATAAATAAAAGTAACAT
Found at i:9926082 original size:18 final size:18
Alignment explanation
Indices: 9926041--9926083 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
9926031 CTAACAATAG
9926041 AGATTAATTTAAAAAATT
1 AGATTAATTTAAAAAATT
* *
9926059 ATATTAA-TTAAAATACTT
1 AGATTAATTTAAAA-AATT
9926077 AGATTAA
1 AGATTAA
9926084 CAAAAAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (18 bp):
AGATTAATTTAAAAAATT
Found at i:9929329 original size:2 final size:2
Alignment explanation
Indices: 9929322--9929368 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
9929312 ATACATACAT
9929322 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
9929364 AG AG A
1 AG AG A
9929369 TAACTATATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9933417 original size:2 final size:2
Alignment explanation
Indices: 9933410--9933439 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9933400 TTATGTTTCG
9933410 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9933440 GATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:9937675 original size:47 final size:47
Alignment explanation
Indices: 9937611--9937721 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
9937601 GACATTGAGT
*
9937611 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
9937658 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
9937705 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
9937722 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:9944930 original size:47 final size:47
Alignment explanation
Indices: 9944866--9944976 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
9944856 GACATTGAGT
*
9944866 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
9944913 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
9944960 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
9944977 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:9957208 original size:47 final size:47
Alignment explanation
Indices: 9957099--9957209 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
9957089 CCGGGATAAG
*
9957099 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
9957146 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
9957193 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
9957210 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:9964462 original size:47 final size:47
Alignment explanation
Indices: 9964353--9964463 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
9964343 CCGGGATAAG
*
9964353 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
9964400 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
9964447 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
9964464 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:9967039 original size:12 final size:12
Alignment explanation
Indices: 9967022--9967048 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9967012 TTTAAAAAAC
9967022 ACTTCAATCGAA
1 ACTTCAATCGAA
9967034 ACTTCAATCGAA
1 ACTTCAATCGAA
9967046 ACT
1 ACT
9967049 CCCCACGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (12 bp):
ACTTCAATCGAA
Found at i:9967697 original size:24 final size:24
Alignment explanation
Indices: 9967648--9967698 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
9967638 ATATGTGTTT
* * *
9967648 AAAAATAACATATAATATTATTTA
1 AAAAATAACATATAAAAATATATA
9967672 AAAAATAACATATAAAAA-ATAATA
1 AAAAATAACATATAAAAATAT-ATA
9967696 AAA
1 AAA
9967699 CGTATAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (24 bp):
AAAAATAACATATAAAAATATATA
Found at i:9969555 original size:48 final size:48
Alignment explanation
Indices: 9969489--9969583 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
9969479 TTGATTTGAA
*
9969489 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTG
9969537 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
9969584 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (48 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTG
Found at i:9969654 original size:72 final size:72
Alignment explanation
Indices: 9969537--9969677 Score: 282
Period size: 72 Copynumber: 2.0 Consensus size: 72
9969527 AACTCATTTG
9969537 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
9969602 TTTTGAA
66 TTTTGAA
9969609 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
9969674 TTTT
66 TTTT
9969678 TTTTTTGAAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:9969834 original size:13 final size:13
Alignment explanation
Indices: 9969807--9969840 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
9969797 GAGTTGATTC
*
9969807 TTGAACAACATAAA
1 TTGAA-AACAGAAA
9969821 TTGAAAACAGAAA
1 TTGAAAACAGAAA
9969834 TTGAAAA
1 TTGAAAA
9969841 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:9969962 original size:54 final size:54
Alignment explanation
Indices: 9969862--9969967 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
9969852 GACCTGAGGC
*
9969862 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
9969916 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
9969968 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:9970039 original size:139 final size:140
Alignment explanation
Indices: 9969682--9970300 Score: 1094
Period size: 139 Copynumber: 4.5 Consensus size: 140
9969672 AATTTTTTTT
* *
9969682 TTGAAAGATAGAAATT-AAAATACCTCAGCATGTGAAC-GAGGCTCAACTCA-C-CTCGCAATAT
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
9969743 GAGCTGATTTTGAAAAAGTAGAAATTAAAAAGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
63 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
9969808 TGAACAACATAAA
128 TGAACAACGTAAA
9969821 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
9969886 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
9969951 ACAACGTAAA
131 ACAACGTAAA
9969961 TTGAAAACAGAAATTGAAAATACCT-AGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
9970025 TTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTT-A
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
9970089 ACAACGTAAA
131 ACAACGTAAA
9970099 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
9970164 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
9970229 ACAA---AAA
131 ACAACGTAAA
9970236 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
9970301 TTGAAATTAA
Statistics
Matches: 466, Mismatches: 8, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
137 73 0.16
138 57 0.12
139 221 0.47
140 115 0.25
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:9970367 original size:72 final size:71
Alignment explanation
Indices: 9970233--9970398 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
9970223 TCTTGAACAA
* * * *
9970233 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
9970298 GAGTTG
66 GAGTTG
*
9970304 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
9970369 TGAGTTG
65 TGAGTTG
**
9970376 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
9970399 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:9970493 original size:122 final size:124
Alignment explanation
Indices: 9970273--9970519 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 124
9970263 GCGTGACCTG
* *
9970273 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
9970338 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * * *
9970398 AGGCTTAACTCACCTTTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
9970460 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
9970519 A
1 A
9970520 ATACCTCAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 16 0.14
122 63 0.56
123 7 0.06
124 1 0.01
125 26 0.23
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:9970541 original size:71 final size:70
Alignment explanation
Indices: 9970398--9970572 Score: 221
Period size: 71 Copynumber: 2.5 Consensus size: 70
9970388 AAAAATTAAA
* * * * *
9970398 AGGCTTAACTCACCTT-TCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGT
9970461 GCCCCG
65 GCCCCG
*
9970467 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
9970532 GTCTTG
65 GCCCCG
9970538 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
9970573 CCCTTGAAAA
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
68 3 0.03
69 23 0.25
70 6 0.06
71 61 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:9978630 original size:15 final size:15
Alignment explanation
Indices: 9978610--9978644 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
9978600 CTCGTTTCTT
9978610 GTTGCGATTTGGCCA
1 GTTGCGATTTGGCCA
9978625 GTTGCGATTTGGCCA
1 GTTGCGATTTGGCCA
9978640 GTTGC
1 GTTGC
9978645 TCTTGAGCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.20, G:0.34, T:0.34
Consensus pattern (15 bp):
GTTGCGATTTGGCCA
Found at i:9980415 original size:16 final size:15
Alignment explanation
Indices: 9980394--9980441 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
9980384 GATGTGAATA
9980394 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
9980410 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
9980425 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
9980441 A
1 A
9980442 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:9980424 original size:8 final size:8
Alignment explanation
Indices: 9980390--9980441 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
9980380 CAATGATGTG
*
9980390 AATAATAA
1 AATATTAA
9980398 AATATATAA
1 AATAT-TAA
9980407 AATA-TAA
1 AATATTAA
9980414 AATATTAA
1 AATATTAA
*
9980422 AATATCAA
1 AATATTAA
*
9980430 AATATTAG
1 AATATTAA
9980438 AATA
1 AATA
9980442 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Done.