Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 260 of 335
Found at i:78697771 original size:146 final size:147
Alignment explanation
Indices: 78697603--78697899 Score: 542
Period size: 146 Copynumber: 2.0 Consensus size: 147
78697593 TACCACATAT
*
78697603 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTC
* *
78697668 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA-TTTCACATTCATCACGTCGG
66 ACATTCATCACATCGGCCATTAGGACTTATCACATATATATACATTTTCACATTCATCACATCGG
78697732 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
*
78697749 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATGTATACACTTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTC
*
78697814 ACATTCATCACGTCGGCCATTAGGACTTATCACATATATATACATTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGACTTATCACATATATATACATTTTCACATTCATCACATCGG
78697879 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
78697896 ATAT
1 ATAT
78697900 TATTATGTAC
Statistics
Matches: 145, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
146 105 0.72
147 40 0.28
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.34
Consensus pattern (147 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTC
ACATTCATCACATCGGCCATTAGGACTTATCACATATATATACATTTTCACATTCATCACATCGG
CCATTAGGCCTTATCAC
Found at i:78701898 original size:39 final size:40
Alignment explanation
Indices: 78701773--78702119 Score: 463
Period size: 39 Copynumber: 8.8 Consensus size: 40
78701763 CCAGCATGAT
* * * *
78701773 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * * ** * *
78701813 TGCTCTTC-GAGACTTAGTCCAGTTGCATTACTAGCACGAA
1 TGCTCTTCGGA-ACTTAGCCCGGATATATCATTAGCACGAA
*
78701853 TGCTCTTCGGAATTTAG-CCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
78701892 TGCTCTTC-GAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
78701931 TGCTCTTC-GAACTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
78701970 TGCTCTTC-GAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
78702009 TGCTC-TCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
78702048 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * *
78702088 TGCTCTTCGGAACTTAGTCCAGATACATCATT
1 TGCTCTTCGGAACTTAGCCCGGATATATCATT
78702120 CTCAATTCTC
Statistics
Matches: 276, Mismatches: 26, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
38 10 0.04
39 161 0.58
40 103 0.37
41 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
Found at i:78704193 original size:49 final size:49
Alignment explanation
Indices: 78704126--78704425 Score: 546
Period size: 49 Copynumber: 6.1 Consensus size: 49
78704116 TACCACATAT
78704126 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
78704175 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
78704224 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
78704273 ATATATATACACTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
78704322 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGACTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
78704371 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
78704420 ATATAT
1 ATATAT
78704426 TATTATGTAC
Statistics
Matches: 241, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 241 1.00
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:78708371 original size:40 final size:40
Alignment explanation
Indices: 78708298--78708569 Score: 393
Period size: 40 Copynumber: 6.8 Consensus size: 40
78708288 CCAGCATGAT
* * * *
78708298 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * ** * *
78708338 TGCTCTTC-GAGACTTAGTCCGGTTGCATTACTAGCACGAA
1 TGCTCTTCGGA-ACTTAGCCCGGATATATCATTAGCACGAA
*
78708378 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
78708418 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
78708458 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
78708498 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
78708538 TGCTCTTCGGAACTTAGTCCGGATACATCATT
1 TGCTCTTCGGAACTTAGCCCGGATATATCATT
78708570 CTCAATTCTC
Statistics
Matches: 212, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 1 0.00
40 209 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
Found at i:78710638 original size:49 final size:49
Alignment explanation
Indices: 78710573--78710872 Score: 546
Period size: 49 Copynumber: 6.1 Consensus size: 49
78710563 CCACATATAT
78710573 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
78710622 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
78710671 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
78710720 ATATATATACACTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
78710769 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGACTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
78710818 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
78710867 ATATAT
1 ATATAT
78710873 TATTATGTAC
Statistics
Matches: 241, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 241 1.00
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:78714826 original size:40 final size:40
Alignment explanation
Indices: 78714753--78715104 Score: 508
Period size: 40 Copynumber: 8.8 Consensus size: 40
78714743 CCAGCATCAT
* * * *
78714753 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * ** * *
78714793 TGCTCTTC-GAGACTTAGTCCGGTTGCATTACTAGCACGAA
1 TGCTCTTCGGA-ACTTAGCCCGGATATATCATTAGCACGAA
* *
78714833 TGCTCTTCGGAATTTAGCCTGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
78714873 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
78714913 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
78714953 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * *
78714993 TGCTCTTCGGAACTTAGTCTGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
78715033 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
78715073 TGCTCTTCGGAACTTAGTCCGGATACATCATT
1 TGCTCTTCGGAACTTAGCCCGGATATATCATT
78715105 CTCAATTCTC
Statistics
Matches: 282, Mismatches: 28, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 279 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
Found at i:78717214 original size:49 final size:49
Alignment explanation
Indices: 78717110--78717411 Score: 505
Period size: 49 Copynumber: 6.1 Consensus size: 49
78717100 CCACATATAT
78717110 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * *
78717159 ATATATATATATATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
78717210 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
78717259 ATATATATACACTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAA
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
78717308 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGACTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
78717357 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
78717406 ATATAT
1 ATATAT
78717412 TATTATGTAC
Statistics
Matches: 235, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
49 189 0.80
51 46 0.20
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:78720010 original size:22 final size:22
Alignment explanation
Indices: 78719985--78720039 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
78719975 GGGGTGTCAC
78719985 AGCCATAATCAGGTTGGCACAA
1 AGCCATAATCAGGTTGGCACAA
* *
78720007 AGCCAT-ATGTAGGTTTGCACAA
1 AGCCATAAT-CAGGTTGGCACAA
78720029 AGCCATAATCA
1 AGCCATAATCA
78720040 AAATAATTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 2 0.07
22 24 0.86
23 2 0.07
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (22 bp):
AGCCATAATCAGGTTGGCACAA
Found at i:78720460 original size:27 final size:27
Alignment explanation
Indices: 78720430--78721023 Score: 676
Period size: 27 Copynumber: 22.2 Consensus size: 27
78720420 GGAAAAATGG
* * *
78720430 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
78720457 TAATTCTACCTTACAAGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
78720483 GTAATTCTACCCTACAGGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
78720510 GTAATTCTACCTTAC-AGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
78720536 GTAATTCTACCCTATAGGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * *
78720563 GTATTTCTACCCTACAATGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
78720591 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
78720618 TAATTCTATCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
78720645 TAATTCTACCCTAC-AGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
78720671 TATTTCTACCTTACAAGGGTATTT-TA
1 TAATTCTACCCTACAAGGGTATTTCGA
78720697 GTAATTCTACCCTACAAGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * *
78720724 GTAATTTTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
78720752 TAATTCTACCCTACAAAGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
78720778 GTAATTCTACCCTAC-AGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
78720804 GTATTTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
78720832 TAATTCTACCCTACAAGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
78720858 GTAATTCTACCCTACAGGGGTATTTCGA
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * **
78720886 TAATTCTACCCT-TAGGGGTATTTTAA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
78720912 TAATTCTACCCTA-TAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
78720938 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
78720965 TAGTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * *
78720992 TAATTCTACCCTATAGGGGTGTTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
78721019 TAATT
1 TAATT
78721024 TTGTAAATCA
Statistics
Matches: 494, Mismatches: 59, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
26 116 0.23
27 377 0.76
28 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:78720615 original size:107 final size:107
Alignment explanation
Indices: 78720428--78721023 Score: 772
Period size: 107 Copynumber: 5.6 Consensus size: 107
78720418 GAGGAAAAAT
* * * *
78720428 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCTTACAAGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCG-TAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* *
78720493 CCTACAGGGGTATTTCAGTAATTCTACCTTAC-AGGGTATTTC
65 CCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* * * * * *
78720535 AGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAATGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTC-GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* *
78720600 CCTACAGGGGTATTTC-GATAATTCTATCCTACAAGGGTATTTC
65 CCTACAAGGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTC
* * *
78720643 GGTAATTCTACCCTAC-AGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTC-GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* *
78720707 CCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTC
65 CCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* *
78720750 GGTAATTCTACCCTACAAAGGTATTTCAGTAATTCTACCCTAC-AGGGTATTTCAGTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTC-GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
*
78720814 CCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
65 CCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* * * * * *
78720857 AGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT-TAGGGGTATTTTAATAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCG-TAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* *
78720921 CCTA-TAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
65 CCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* * * * *
78720963 GGTAGTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTGTTTCGGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCG-TAATTCTACCCTACAAGGGTATTTCAGTAATT
78721024 TTGTAAATCA
Statistics
Matches: 432, Mismatches: 49, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
106 77 0.18
107 307 0.71
108 48 0.11
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (107 bp):
GGTAATTCTACCCTACAAGGGTATTTCGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
Found at i:78720678 original size:134 final size:134
Alignment explanation
Indices: 78720429--78721023 Score: 834
Period size: 134 Copynumber: 4.4 Consensus size: 134
78720419 AGGAAAAATG
* * * * * *
78720429 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCTTACAAGGGTATTTC-AGTAATTCTAC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTAC
* * * *
78720493 CCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGTATTTCAGTAATTCTACCCTATAGGGGTA
65 CCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTACAAGGGTA
78720558 TTTCA
130 TTTCA
* * *
78720563 GTATTTCTACCCTACAATGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTATC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
* * * *
78720628 CTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCGGTATTTCTACCTTACAAGGGTAT
66 CTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTACAAGGGTAT
*
78720693 TTTA
131 TTCA
* * *
78720697 GTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
* *
78720762 CTACAAAGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAGTATTTCTACCCTACAAGGGTAT
66 CTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTACAAGGGTAT
*
78720827 TTCG
131 TTCA
*
78720831 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
* * * * * *
78720896 CT-TAGGGGTATTTTAATAATTCTACCCTATAGGGTATTTCGGTAATTCTACCCTACAAGGGTAT
66 CTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTACAAGGGTAT
*
78720960 TTCG
131 TTCA
* * * * *
78720964 GTAGTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTGTTTCGGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATT
78721024 TTGTAAATCA
Statistics
Matches: 414, Mismatches: 46, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
133 112 0.27
134 301 0.73
135 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (134 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
CTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTACAAGGGTAT
TTCA
Found at i:78721113 original size:54 final size:54
Alignment explanation
Indices: 78721055--78721347 Score: 265
Period size: 54 Copynumber: 5.4 Consensus size: 54
78721045 GTAATTCTGT
* * * *
78721055 AAATCGGGGGTACTTTGGTAATTTTACAAGTCGA-AGGTATTTTAGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTACAA-TCGAGGGGTATTTTGGTAATTTTAC
** * * * * * *
78721109 AAATC-GGGGTATTTCAGTAATTTTTCAAAT-TAGAGATATTTCGGTAATTTTGC
1 AAATCAGGGGTATTTTGGTAATTTTAC-AATCGAGGGGTATTTTGGTAATTTTAC
* * * *
78721162 AAATCAGGCGTATTTCGATAATTTTACAAAT-TAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC-AATCGAGGGGTATTTTGGTAATTTTAC
* * * * * *
78721216 AAACCAGGGGTATTTTGGTTAGTTTACAAACCAGGGGTATTTTGGTAATTTTAA
1 AAATCAGGGGTATTTTGGTAATTTTACAATCGAGGGGTATTTTGGTAATTTTAC
* * *
78721270 AAACCAGGGGTATTTTGGTAATTTTGCTAATCGA-GGGTATTTTGGTAATTTTCC
1 AAATCAGGGGTATTTTGGTAATTTTAC-AATCGAGGGGTATTTTGGTAATTTTAC
*
78721324 TAATC-GAGGGTATTTTGGTAATTT
1 AAATCAG-GGGTATTTTGGTAATTT
78721348 GGTAAACTAA
Statistics
Matches: 198, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
52 1 0.01
53 42 0.21
54 151 0.76
55 4 0.02
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (54 bp):
AAATCAGGGGTATTTTGGTAATTTTACAATCGAGGGGTATTTTGGTAATTTTAC
Found at i:78721133 original size:27 final size:26
Alignment explanation
Indices: 78721055--78721347 Score: 219
Period size: 27 Copynumber: 10.9 Consensus size: 26
78721045 GTAATTCTGT
78721055 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATC-GGGGTA-TTTCGGTAATTTTAC
* * **
78721082 AAGTCGAAGGTATTTTAGTAATTTTAC
1 AAATCG-GGGTATTTCGGTAATTTTAC
* *
78721109 AAATCGGGGTATTTCAGTAATTTTTC
1 AAATCGGGGTATTTCGGTAATTTTAC
* * * *
78721135 AAATTAGAGATATTTCGGTAATTTTGC
1 AAA-TCGGGGTATTTCGGTAATTTTAC
* *
78721162 AAATCAGGCGTATTTCGATAATTTTAC
1 AAATC-GGGGTATTTCGGTAATTTTAC
* *
78721189 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAA-TCGGGGTATTTCGGTAATTTTAC
* * * *
78721216 AAACCAGGGGTATTTTGGTTAGTTTAC
1 AAATC-GGGGTATTTCGGTAATTTTAC
* * *
78721243 AAACCAGGGGTATTTTGGTAATTTTAA
1 AAATC-GGGGTATTTCGGTAATTTTAC
* * *
78721270 AAACCAGGGGTATTTTGGTAATTTTGC
1 AAATC-GGGGTATTTCGGTAATTTTAC
* * *
78721297 TAATCGAGGGTATTTTGGTAATTTTCC
1 AAATCG-GGGTATTTCGGTAATTTTAC
* *
78721324 TAATCGAGGGTATTTTGGTAATTT
1 AAATCG-GGGTATTTCGGTAATTT
78721348 GGTAAACTAA
Statistics
Matches: 225, Mismatches: 34, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
26 26 0.12
27 198 0.88
28 1 0.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
AAATCGGGGTATTTCGGTAATTTTAC
Found at i:78721308 original size:81 final size:80
Alignment explanation
Indices: 78721062--78721347 Score: 265
Period size: 81 Copynumber: 3.5 Consensus size: 80
78721052 TGTAAATCGG
* * * * **
78721062 GGGTACTTTGGTAATTTTACAAGTC-GAAGGTATTTTAGTAATTTTACAAATC-GGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTG
* *
78721125 GTAATTTTTCAAAT-TA
65 GTAATTTTAC-AATCCA
* * * * * * *
78721141 GAGATATTTCGGTAATTTTGCAAATCAGGCGTATTTCGATAATTTTACAAATTAGGGGTATTTTG
1 G-GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTG
*
78721206 GTAATTTTACAAACCA
65 GTAATTTTACAATCCA
* * * * *
78721222 GGGGTATTTTGGTTAGTTTACAAACCAGGGGTATTTTGGTAATTTTAAAAACCAGGGGTATTTTG
1 -GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTG
* *
78721287 GTAATTTTGCTAATCGA
65 GTAATTTTAC-AATCCA
* *
78721304 GGGTATTTTGGTAATTTTCCTAATC-GAGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTT
78721348 GGTAAACTAA
Statistics
Matches: 164, Mismatches: 36, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
79 1 0.01
80 41 0.25
81 117 0.71
82 5 0.03
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGG
TAATTTTACAATCCA
Found at i:78722829 original size:14 final size:16
Alignment explanation
Indices: 78722796--78722832 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
78722786 TTTTAATTAG
*
78722796 TATTATGAGATAAAAT
1 TATTATTAGATAAAAT
78722812 TATTATTAGA-AAAA-
1 TATTATTAGATAAAAT
78722826 TATTATT
1 TATTATT
78722833 GTATGTATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 4 0.20
16 9 0.45
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (16 bp):
TATTATTAGATAAAAT
Found at i:78722930 original size:3 final size:3
Alignment explanation
Indices: 78722922--78722967 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
78722912 TGTTAATGAA
78722922 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
78722968 GTAATTAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:78725179 original size:25 final size:25
Alignment explanation
Indices: 78725141--78725188 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
78725131 TTATAATATG
** *
78725141 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
*
78725166 AAAATGACCATTTTACCTCTAGG
1 AAAATGACCATTTTACCCCTAGG
78725189 GTTTAATTGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:78733954 original size:2 final size:2
Alignment explanation
Indices: 78733947--78733986 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
78733937 ACCAGAACAG
78733947 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78733987 GTGTCGCGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78741094 original size:27 final size:26
Alignment explanation
Indices: 78741046--78741105 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
78741036 GCGAGGCTGC
*
78741046 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
78741073 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
78741099 CAGATAT
1 CAGATAT
78741106 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:78741201 original size:67 final size:70
Alignment explanation
Indices: 78741073--78741214 Score: 191
Period size: 67 Copynumber: 2.1 Consensus size: 70
78741063 TCACCAGATA
* * * *
78741073 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACTAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAGA-ATATATATGTGGCGAAGCCACCAGATTGCAGCGA
78741138 GACTGC
65 GACTGC
* *
78741144 CAGATATTGTGACGAAGTCACCAGAACAG-AT-T-TATGTGGCGAGGCCACCAGATTGCAGCGAG
1 CAGATATTGTGACGAAGCCACCAGAACAGAATATATATGTGGCGAAGCCACCAGATTGCAGCGAG
*
78741206 GCTGC
66 ACTGC
78741211 CAGA
1 CAGA
78741215 ACACTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 36 0.56
68 1 0.02
69 2 0.03
71 25 0.39
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (70 bp):
CAGATATTGTGACGAAGCCACCAGAACAGAATATATATGTGGCGAAGCCACCAGATTGCAGCGAG
ACTGC
Found at i:78744280 original size:11 final size:11
Alignment explanation
Indices: 78744264--78744313 Score: 61
Period size: 11 Copynumber: 4.8 Consensus size: 11
78744254 ATATATGAAT
78744264 ATATCATGTGC
1 ATATCATGTGC
*
78744275 ATATCA--TAC
1 ATATCATGTGC
78744284 ATATCATGTGC
1 ATATCATGTGC
78744295 ATATCATGT-C
1 ATATCATGTGC
*
78744305 AAATCATGT
1 ATATCATGT
78744314 ATACCAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.26
11 17 0.50
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:78744289 original size:20 final size:20
Alignment explanation
Indices: 78744264--78744301 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
78744254 ATATATGAAT
78744264 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
78744284 ATATCATGTGCATATCAT
1 ATATCATGTGCATATCAT
78744302 GTCAAATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:78744378 original size:25 final size:25
Alignment explanation
Indices: 78744350--78744397 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78744340 ATAATTAAAC
* * *
78744350 CCTAAGGGTATAATGGTCATTTTCA
1 CCTAAGGGAAAAATAGTCATTTTCA
78744375 CCTAAGGGAAAAATAGTCATTTT
1 CCTAAGGGAAAAATAGTCATTTT
78744398 TCATATTATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (25 bp):
CCTAAGGGAAAAATAGTCATTTTCA
Found at i:78753315 original size:41 final size:41
Alignment explanation
Indices: 78753258--78753342 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
78753248 CATAAGAGAG
*
78753258 TAAAAAGAGCGAGAAACGGGCTGAAAATGGAGAAAATAGAC
1 TAAAAAGAACGAGAAACGGGCTGAAAATGGAGAAAATAGAC
78753299 TAAAAAGAACGAGAAACGGGCTGAAAATGGAGAAAATAGAC
1 TAAAAAGAACGAGAAACGGGCTGAAAATGGAGAAAATAGAC
78753340 TAA
1 TAA
78753343 CATGGGAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.53, C:0.09, G:0.27, T:0.11
Consensus pattern (41 bp):
TAAAAAGAACGAGAAACGGGCTGAAAATGGAGAAAATAGAC
Found at i:78755309 original size:46 final size:46
Alignment explanation
Indices: 78755256--78755431 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
78755246 TATTTGGGCA
78755256 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
78755302 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
78755349 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
78755395 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78755432 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 66 0.59
47 33 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:78755411 original size:93 final size:93
Alignment explanation
Indices: 78755252--78755423 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
78755242 GGGATATTTG
* * *
78755252 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
78755317 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
78755345 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
78755410 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
78755424 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78772468 original size:8 final size:8
Alignment explanation
Indices: 78772455--78772524 Score: 54
Period size: 8 Copynumber: 8.2 Consensus size: 8
78772445 TTATTTTCTC
78772455 AAAAATTT
1 AAAAATTT
78772463 AAAAATTACT
1 AAAAATT--T
*
78772473 AATAATTT
1 AAAAATTT
*
78772481 AATAAATTG
1 AA-AAATTT
78772490 AAAAA-TT
1 AAAAATTT
78772497 AAATAATTT
1 AAA-AATTT
78772506 AATAAAATTT
1 -A-AAAATTT
78772516 -AAAATTT
1 AAAAATTT
78772523 AA
1 AA
78772525 GAGGTCTCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
7 11 0.22
8 16 0.32
9 8 0.16
10 13 0.26
11 2 0.04
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (8 bp):
AAAAATTT
Found at i:78772507 original size:25 final size:26
Alignment explanation
Indices: 78772457--78772511 Score: 85
Period size: 25 Copynumber: 2.1 Consensus size: 26
78772447 ATTTTCTCAA
*
78772457 AAATTTAAAAATTACTAATAATTTAAT
1 AAATTGAAAAATTAC-AATAATTTAAT
78772484 AAATTGAAAAATTA-AATAATTTAAT
1 AAATTGAAAAATTACAATAATTTAAT
78772509 AAA
1 AAA
78772512 ATTTAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 14 0.52
27 13 0.48
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (26 bp):
AAATTGAAAAATTACAATAATTTAAT
Found at i:78772519 original size:25 final size:26
Alignment explanation
Indices: 78772456--78772521 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 26
78772446 TATTTTCTCA
78772456 AAAATTTAAAAATTACTAATAATTTAAT
1 AAAATTT-AAAATTAC-AATAATTTAAT
*
78772484 -AAATTGAAAAATTA-AATAATTTAAT
1 AAAATT-TAAAATTACAATAATTTAAT
78772509 AAAATTTAAAATT
1 AAAATTTAAAATT
78772522 TAAGAGGTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 17 0.50
26 5 0.15
27 12 0.35
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (26 bp):
AAAATTTAAAATTACAATAATTTAAT
Found at i:78772524 original size:17 final size:18
Alignment explanation
Indices: 78772456--78772517 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
78772446 TATTTTCTCA
*
78772456 AAAATTTAA-AAATTACT
1 AAAATTTAATAAATTAAT
*
78772473 AATAATTTAATAAATTGA-
1 AA-AATTTAATAAATTAAT
* *
78772491 AAAATTAAATAATTTAAT
1 AAAATTTAATAAATTAAT
78772509 AAAATTTAA
1 AAAATTTAA
78772518 AATTTAAGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
17 14 0.39
18 17 0.47
19 5 0.14
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAATTTAATAAATTAAT
Found at i:78773219 original size:14 final size:14
Alignment explanation
Indices: 78773186--78773216 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
78773176 TTATAAAGAC
78773186 TAATATATAAATTA
1 TAATATATAAATTA
78773200 TAATATATATAATTA
1 TAATATATA-AATTA
78773215 TA
1 TA
78773217 TATTAAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TAATATATAAATTA
Found at i:78782160 original size:39 final size:39
Alignment explanation
Indices: 78782061--78782250 Score: 154
Period size: 39 Copynumber: 4.8 Consensus size: 39
78782051 CGAATGATGT
* * * * *
78782061 CCGGGCTAAGTCCTGAAGGCTTTC-TGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * *
78782101 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
78782140 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
78782179 CCCGGGTTAAGTCCC-AAGGCATTCGTGCGAGTCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
78782219 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
78782251 CGTTATATCC
Statistics
Matches: 120, Mismatches: 23, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
39 64 0.53
40 52 0.43
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:78790220 original size:79 final size:82
Alignment explanation
Indices: 78790080--78790264 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
78790070 TCGAATGATG
* * *
78790080 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
78790144 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
78790160 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
78790222 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
78790240 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78790265 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:78790272 original size:40 final size:40
Alignment explanation
Indices: 78790081--78790272 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
78790071 CGAATGATGT
* * * * *
78790081 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
78790121 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
78790161 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
78790200 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
78790240 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
78790273 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:78790295 original size:79 final size:79
Alignment explanation
Indices: 78790080--78790297 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
78790070 TCGAATGATG
* * * * ** *
78790080 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
78790143 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
78790160 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
78790225 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
78790240 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
78790298 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:78793979 original size:2 final size:2
Alignment explanation
Indices: 78793972--78794001 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
78793962 CCCATATTAG
78793972 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78794002 GGCATTGGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78796713 original size:42 final size:42
Alignment explanation
Indices: 78796654--78796737 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
78796644 TGAGACAACG
78796654 GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
1 GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
78796696 GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
1 GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
78796738 CTATCACCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (42 bp):
GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
Found at i:78807686 original size:40 final size:40
Alignment explanation
Indices: 78807637--78807844 Score: 206
Period size: 40 Copynumber: 5.2 Consensus size: 40
78807627 TCTTCGGAAT
* * *
78807637 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
78807676 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
78807716 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * * *
78807756 TTAGCCCAGATATATTC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATA-ACAACTAGCACAAATGCCTTCGGGTC
* * * *
78807796 TTAGCCCGGATATAGTC-ACTAGCATAAATGCCTTCAGGAC
1 TTAGCCCGGATATA-ACAACTAGCACAAATGCCTTCGGGTC
78807836 TTAGCCCGG
1 TTAGCCCGG
78807845 GTATCATTCA
Statistics
Matches: 142, Mismatches: 25, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 138 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:78811107 original size:71 final size:71
Alignment explanation
Indices: 78811021--78811184 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78811011 CGATTTGTCT
78811021 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78811086 CTTTCA
66 CTTTCA
78811092 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78811157 CTTTCA
66 CTTTCA
78811163 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78811185 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78811222 original size:71 final size:70
Alignment explanation
Indices: 78811021--78811218 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
78811011 CGATTTGTCT
* * * *
78811021 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78811086 CTTTCA
65 CTTTCA
* * * *
78811092 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78811157 CTTTCA
65 CTTTCA
* *
78811163 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78811219 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78818653 original size:71 final size:71
Alignment explanation
Indices: 78818567--78818730 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78818557 CGATTTGTCT
78818567 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78818632 CTTTCA
66 CTTTCA
78818638 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78818703 CTTTCA
66 CTTTCA
78818709 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78818731 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78818768 original size:71 final size:70
Alignment explanation
Indices: 78818567--78818764 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
78818557 CGATTTGTCT
* * * *
78818567 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78818632 CTTTCA
65 CTTTCA
* * * *
78818638 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78818703 CTTTCA
65 CTTTCA
* *
78818709 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78818765 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78821411 original size:29 final size:27
Alignment explanation
Indices: 78821377--78821479 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
78821367 TACTCAATCA
*
78821377 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
78821406 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
78821435 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
78821464 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
78821480 ATCTTGTCGC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:78826923 original size:20 final size:20
Alignment explanation
Indices: 78826895--78826944 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
78826885 AAGACTATGA
*
78826895 ACCACTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
78826915 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
**
78826935 TTCATTCCAT
1 ACCATTCCAT
78826945 GTTCTTAGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:78837473 original size:42 final size:42
Alignment explanation
Indices: 78837354--78837475 Score: 163
Period size: 43 Copynumber: 2.9 Consensus size: 42
78837344 TACCATACCA
* **
78837354 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
78837396 ATGCCAATAGCCCAGCTATGGTCTAACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
78837439 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
78837476 ACTAACCCTA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:78839908 original size:25 final size:25
Alignment explanation
Indices: 78839862--78839909 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
78839852 CTGAGCTAAA
*
78839862 CAGGAAACTCATAAGAGTTTTTACC
1 CAGGAAACTCATAAGAGCTTTTACC
*
78839887 CAGGAAGCTCAT-AGAGCCTTTTA
1 CAGGAAACTCATAAGAG-CTTTTA
78839910 GATATCTACG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (25 bp):
CAGGAAACTCATAAGAGCTTTTACC
Found at i:78850622 original size:40 final size:40
Alignment explanation
Indices: 78850537--78850687 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
78850527 AATTGAATGA
* * *
78850537 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * * *
78850577 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTCGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAC-ATAC
* *
78850618 -ATCCGGGCTAAGACCCGAAAGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
78850657 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
78850688 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
39 5 0.06
40 81 0.91
41 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:78850701 original size:40 final size:40
Alignment explanation
Indices: 78850574--78850703 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 40
78850564 ATGCTGGAAA
* * * *
78850574 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATCG
* * * * *
78850614 CTACATCCGGGCTAAGACCCGAAAGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATCG
* *
78850654 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATCG
78850694 TTATATCCGG
1 TTATATCCGG
78850704 TTATATTCCG
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
39 2 0.03
40 68 0.97
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATCG
Found at i:78854987 original size:40 final size:40
Alignment explanation
Indices: 78854932--78855101 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
78854922 AACATTGGAA
78854932 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
78854972 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
78855012 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
78855051 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
78855092 CTATATCCGG
1 ATATATCCGG
78855102 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:78860914 original size:20 final size:20
Alignment explanation
Indices: 78860889--78860926 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78860879 GTTTATTCGC
*
78860889 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
78860909 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
78860927 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:78862575 original size:28 final size:28
Alignment explanation
Indices: 78862543--78862611 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
78862533 GCGTAGATCA
78862543 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
78862571 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
78862599 CGATA-TACCCCTA
1 CGAAATTACCCCTA
78862612 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:78868895 original size:20 final size:20
Alignment explanation
Indices: 78868870--78868907 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78868860 GTTTATTCGC
*
78868870 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
78868890 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
78868908 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:78870566 original size:28 final size:28
Alignment explanation
Indices: 78870534--78870588 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
78870524 CGTAGATCAC
*
78870534 GAAATTACCCCTAAAGAGCAAACTTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
78870562 GAAATTACCCCTAAAGAGCAAAATTAC
1 GAAATTACCCCTAAAGAGCAAAATTAC
78870589 CAATATACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.45, C:0.24, G:0.11, T:0.20
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACT
Found at i:78872516 original size:46 final size:47
Alignment explanation
Indices: 78872402--78872523 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 47
78872392 TGTCTTCGAC
** * * *
78872402 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATACATCTAAT
* *
78872452 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATACATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATACATCTAAT
*
78872498 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
78872524 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.52
50 30 0.48
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATACATCTAAT
Found at i:78875872 original size:43 final size:41
Alignment explanation
Indices: 78875825--78875920 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 41
78875815 TCCTAGATAG
*
78875825 GGTCTTACATAAAATCAACTAACGATGCCAATGTCCCAAACAT
1 GGTCTTACATAAAATCAA-T-ACAATGCCAATGTCCCAAACAT
** *
78875868 GGTCTTACACGTAATCTCAATACAATGCCAATGTCCCAGACAT
1 GGTCTTACA--TAAAATCAATACAATGCCAATGTCCCAAACAT
78875911 GGTCTTACAT
1 GGTCTTACAT
78875921 GTAATCACAT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
41 1 0.02
43 38 0.81
44 1 0.02
45 7 0.15
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (41 bp):
GGTCTTACATAAAATCAATACAATGCCAATGTCCCAAACAT
Found at i:78879494 original size:42 final size:42
Alignment explanation
Indices: 78879442--78879529 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
78879432 CATGCAAAAT
* * *
78879442 CATATCTGGGATATGGCATCAATATGCGAC-TATGTGTAAGAC
1 CATATATGGGACATGGCATCAATATGAGACAT-TGTGTAAGAC
* *
78879484 CATATATGGGACATGGCATCGATTTGAGACATTGTGTAAGAC
1 CATATATGGGACATGGCATCAATATGAGACATTGTGTAAGAC
78879526 CATA
1 CATA
78879530 GCTGTGCTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (42 bp):
CATATATGGGACATGGCATCAATATGAGACATTGTGTAAGAC
Found at i:78886458 original size:40 final size:39
Alignment explanation
Indices: 78886293--78886476 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
78886283 AAATTGAATG
* * *
78886293 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
78886333 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
78886373 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
78886413 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
78886452 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
78886477 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:78886501 original size:80 final size:81
Alignment explanation
Indices: 78886333--78886521 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
78886323 GCTGGAAATT
* * * *
78886333 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
78886398 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
78886414 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
78886477 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
78886493 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
78886522 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:78897646 original size:40 final size:40
Alignment explanation
Indices: 78897545--78897696 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
78897535 TGAATGATGT
* * * * *
78897545 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTTAGTCCCAAAGGCATTTGTGC-GAGTTACTATAA
* * *
78897585 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTTAG-TCCCAAAGGCATTTGTGCGAGTTACTATAA
*
78897624 CCCGGG-TTAAGTCCCAAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTT-AGTCCCAAAGGCATTTGTGCGAGTTACTATAA
* * *
78897665 CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTTAGTCCCAAAGGCATTTGTGCGAGT
78897697 CGTTATATCC
Statistics
Matches: 93, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
39 3 0.03
40 78 0.84
41 12 0.13
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTTAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
Found at i:78905485 original size:40 final size:39
Alignment explanation
Indices: 78905389--78905540 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 39
78905379 TGAATGATGT
* * *
78905389 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
*
78905429 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78905468 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** *
78905509 CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
78905541 CGTTATATCC
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 2 0.02
40 83 0.87
41 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78905525 original size:80 final size:80
Alignment explanation
Indices: 78905389--78905540 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
78905379 TGAATGATGT
* *
78905389 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTG
*
78905454 TGCGAGTTACTAAAC
66 AGCGAGTTACTAAAC
* * * * **
78905469 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTATAACCGGGCTTTG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCATT
78905532 TGAGCGAGT
64 TGAGCGAGT
78905541 CGTTATATCC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
79 1 0.02
80 54 0.89
81 6 0.10
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTG
AGCGAGTTACTAAAC
Found at i:78908419 original size:20 final size:20
Alignment explanation
Indices: 78908391--78908434 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
78908381 GGATGCAAAT
*
78908391 GTCCGAACTCGTTGAGTTGA
1 GTCCAAACTCGTTGAGTTGA
78908411 GTCCAAACTCGTTGAGTTGA
1 GTCCAAACTCGTTGAGTTGA
78908431 GTCC
1 GTCC
78908435 GAGTTCACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (20 bp):
GTCCAAACTCGTTGAGTTGA
Found at i:78908429 original size:66 final size:66
Alignment explanation
Indices: 78908350--78908480 Score: 226
Period size: 66 Copynumber: 2.0 Consensus size: 66
78908340 TGAGCATCCG
* *
78908350 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGTCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTGAGTCC
78908415 A
66 A
* *
78908416 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTGAGTCC
78908481 GAGTTCGCTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (66 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTGAGTCC
A
Found at i:78912325 original size:2 final size:2
Alignment explanation
Indices: 78912318--78912348 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
78912308 GAGACTAGTC
78912318 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
78912349 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:78921663 original size:13 final size:13
Alignment explanation
Indices: 78921645--78921670 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78921635 ATTGTGTGAT
78921645 TATCCGAGTGTCC
1 TATCCGAGTGTCC
78921658 TATCCGAGTGTCC
1 TATCCGAGTGTCC
78921671 GAATGGTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (13 bp):
TATCCGAGTGTCC
Found at i:78927772 original size:22 final size:23
Alignment explanation
Indices: 78927747--78927789 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
78927737 TATCCCCACA
*
78927747 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
78927769 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
78927790 GTAGGATCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.02, G:0.53, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:78927901 original size:34 final size:33
Alignment explanation
Indices: 78927809--78927901 Score: 89
Period size: 34 Copynumber: 2.8 Consensus size: 33
78927799 CTGTATGCAT
*
78927809 CACTGATATTGTACTGAATTA-GGCTAAGGCCCA
1 CACTGATATTGTACTGAA-AAGGGCTAAGGCCCA
* * ** *
78927842 CACTGATACTGTTATTGTGATGGGCTAAGGCCCA
1 CACTGATATTG-TACTGAAAAGGGCTAAGGCCCA
*
78927876 CACTGATATTGCCACTGAAAAGGGCT
1 CACTGATATTG-TACTGAAAAGGGCT
78927902 TAAGCCTAGA
Statistics
Matches: 45, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
33 10 0.22
34 35 0.78
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (33 bp):
CACTGATATTGTACTGAAAAGGGCTAAGGCCCA
Found at i:78930133 original size:40 final size:40
Alignment explanation
Indices: 78930089--78930214 Score: 153
Period size: 40 Copynumber: 3.1 Consensus size: 40
78930079 TGAATGATTG
* * * * *
78930089 CACTTACGTGCCCCTATTTGTAATTCGATACCCCTTATTA
1 CACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTAATTA
* * * *
78930129 CACTTTACATGCCCTTGTTTGTACTTTGGTACCCCTGATTG
1 CAC-TTACGTGCCCCTGTTTGTACTTTGGTACCCCTAATTA
*
78930170 CACTTACGTGCCCCTGTTTGTACTTTGGCACCCCTAATTA
1 CACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTAATTA
78930210 CACTT
1 CACTT
78930215 TGGTGCCCTG
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 40 0.56
41 32 0.44
ACGTcount: A:0.18, C:0.30, G:0.13, T:0.38
Consensus pattern (40 bp):
CACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTAATTA
Found at i:78930183 original size:20 final size:20
Alignment explanation
Indices: 78930083--78930185 Score: 57
Period size: 20 Copynumber: 5.1 Consensus size: 20
78930073 AATTATTGAA
78930083 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTACGTGCCCC
* * *
78930103 T-ATTTGTAATT-CGATACCCC
1 TGA-TTGCACTTACG-TGCCCC
* * * *
78930123 TTATTACACTTTACATGCCCT
1 TGATTGCAC-TTACGTGCCCC
* * ** *
78930144 TGTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCC
78930164 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTACGTGCCCC
78930184 TG
1 TG
78930186 TTTGTACTTT
Statistics
Matches: 55, Mismatches: 23, Indels: 10
0.62 0.26 0.11
Matches are distributed among these distances:
19 3 0.05
20 39 0.71
21 12 0.22
22 1 0.02
ACGTcount: A:0.17, C:0.29, G:0.16, T:0.38
Consensus pattern (20 bp):
TGATTGCACTTACGTGCCCC
Found at i:78930194 original size:20 final size:20
Alignment explanation
Indices: 78930133--78930194 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
78930123 TTATTACACT
* *
78930133 TTACATGCCCTTGTTTGTAC
1 TTACGTGCCCCTGTTTGTAC
** * * *
78930153 TTTGGTACCCCTGATTGCAC
1 TTACGTGCCCCTGTTTGTAC
78930173 TTACGTGCCCCTGTTTGTAC
1 TTACGTGCCCCTGTTTGTAC
78930193 TT
1 TT
78930195 TGGCACCCCT
Statistics
Matches: 30, Mismatches: 12, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.13, C:0.27, G:0.18, T:0.42
Consensus pattern (20 bp):
TTACGTGCCCCTGTTTGTAC
Found at i:78930203 original size:20 final size:20
Alignment explanation
Indices: 78930144--78930204 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
78930134 TACATGCCCT
78930144 TGTTTGTACTTTGGTACCCC
1 TGTTTGTACTTTGGTACCCC
* * ** *
78930164 TGATTGCACTTACGTGCCCC
1 TGTTTGTACTTTGGTACCCC
*
78930184 TGTTTGTACTTTGGCACCCC
1 TGTTTGTACTTTGGTACCCC
78930204 T
1 T
78930205 AATTACACTT
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.11, C:0.30, G:0.20, T:0.39
Consensus pattern (20 bp):
TGTTTGTACTTTGGTACCCC
Found at i:78930889 original size:10 final size:11
Alignment explanation
Indices: 78930854--78930886 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
78930844 AGGTTATGCA
78930854 TGAAATGGTTT
1 TGAAATGGTTT
78930865 TGAAATGGTTT
1 TGAAATGGTTT
78930876 TGAAATGGTTT
1 TGAAATGGTTT
78930887 GAATTTAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (11 bp):
TGAAATGGTTT
Found at i:78934298 original size:5 final size:5
Alignment explanation
Indices: 78934288--78934314 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
78934278 TGAGCCAAAA
78934288 ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT
78934315 GGTTGGTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:78942283 original size:20 final size:20
Alignment explanation
Indices: 78942258--78942323 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
78942248 ATTTTGATAA
*
78942258 ACATGATATGTATGACATGC
1 ACATGATATGTATGATATGC
*
78942278 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
78942298 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
78942318 ACATGA
1 ACATGA
78942324 GATATTCATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:78942464 original size:47 final size:46
Alignment explanation
Indices: 78942373--78942536 Score: 242
Period size: 47 Copynumber: 3.5 Consensus size: 46
78942363 AGGAAGTGCA
*
78942373 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
78942419 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
78942466 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATT
*
78942512 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
78942537 TGATAAAGCA
Statistics
Matches: 110, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
46 32 0.29
47 67 0.61
48 11 0.10
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:78942484 original size:70 final size:70
Alignment explanation
Indices: 78942371--78942535 Score: 262
Period size: 70 Copynumber: 2.3 Consensus size: 70
78942361 GGAGGAAGTG
78942371 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATG-CCC
78942435 AGTTAT
65 AGTTAT
*
78942441 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCA
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCA
78942506 GTTAT
66 GTTAT
* *
78942511 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
78942536 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
70 67 0.75
71 22 0.25
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (70 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCA
GTTAT
Found at i:78942515 original size:23 final size:24
Alignment explanation
Indices: 78942372--78942535 Score: 248
Period size: 23 Copynumber: 7.0 Consensus size: 24
78942362 GAGGAAGTGC
78942372 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
78942396 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
78942419 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
78942442 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
78942466 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
78942489 AAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
78942512 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
78942536 ATGATAAAGC
Statistics
Matches: 130, Mismatches: 5, Indels: 9
0.90 0.03 0.06
Matches are distributed among these distances:
23 85 0.65
24 37 0.28
25 8 0.06
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:78947327 original size:20 final size:20
Alignment explanation
Indices: 78947302--78947372 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
78947292 ATTTTGATAA
*
78947302 ACATGATATGTATGACATGC
1 ACATGATATGTATGATATGC
*
78947322 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
78947342 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
78947362 ACATGAGATGT
1 ACATGATATGT
78947373 TCATAAATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:78947442 original size:23 final size:23
Alignment explanation
Indices: 78947416--78947558 Score: 250
Period size: 23 Copynumber: 6.1 Consensus size: 23
78947406 AGGAAGTGCA
78947416 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
78947439 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
78947462 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
78947486 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
78947509 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
78947532 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
78947556 AAA
1 AAA
78947559 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
23 71 0.62
24 44 0.38
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:78947494 original size:24 final size:23
Alignment explanation
Indices: 78947415--78947578 Score: 231
Period size: 23 Copynumber: 7.0 Consensus size: 23
78947405 GAGGAAGTGC
78947415 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
78947438 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
78947461 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
78947484 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
78947508 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
78947532 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
78947556 AAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAG-GGCTTATGCC-CCAGTTA
78947579 CATGATAAAG
Statistics
Matches: 130, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
23 66 0.51
24 54 0.42
25 10 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:78947507 original size:47 final size:46
Alignment explanation
Indices: 78947416--78947558 Score: 250
Period size: 47 Copynumber: 3.1 Consensus size: 46
78947406 AGGAAGTGCA
*
78947416 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
78947462 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
78947509 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATT
78947556 AAA
1 AAA
78947559 AGAGGCTAGG
Statistics
Matches: 93, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
46 22 0.24
47 70 0.75
48 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:78951704 original size:48 final size:48
Alignment explanation
Indices: 78951617--78951886 Score: 267
Period size: 48 Copynumber: 5.7 Consensus size: 48
78951607 GATATATTAT
* * *
78951617 CGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCATATACACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAT--ATGTGC
* * *
78951667 TGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATATGTGC
* *
78951713 CGATGTCATGTCCCAGATATGGTCTTACACTGGCTA-TCATAGTATG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-ACTCATA-TATGTGC
* * * *
78951761 TGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCGT-T-TGGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATAT-G-TGC
*
78951807 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATATGT-GC
78951855 CAGA-G-CATGTCCCAGACAT-GTCTTACACTGGC
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGC
78951887 GTACAAATCA
Statistics
Matches: 187, Mismatches: 19, Indels: 32
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.01
46 42 0.22
47 55 0.29
48 62 0.33
49 21 0.11
50 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATATGTGC
Found at i:78951770 original size:47 final size:47
Alignment explanation
Indices: 78951617--78951886 Score: 257
Period size: 47 Copynumber: 5.7 Consensus size: 47
78951607 GATATATTAT
* *
78951617 CGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCATA-TACACGTGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAGT--ATG-GC
* * * *
78951667 TGATG-CATGTCCCAGACATGTCTTACACTGGCACTCAT-CTCTGTGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAGTATG-GC
* * *
78951713 CGATGTCATGTCCCAGATATGGTCTTACACTGGCTATCATAGTATGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAGTATGGC
* * * * * *
78951761 TGATG-CATGTCCCAGACATGTCTTACACTAGCCCTCGTTTGGAT-GC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTC-ATAGTATGGC
* *
78951807 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAGTATGGC
78951855 CAGA-G-CATGTCCCAGACATGTCTTACACTGGC
1 C-GATGCCATGTCCCAGACATGTCTTACACTGGC
78951887 GTACAAATCA
Statistics
Matches: 184, Mismatches: 27, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
46 41 0.22
47 60 0.33
48 60 0.33
49 19 0.10
50 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAGTATGGC
Found at i:78951809 original size:94 final size:93
Alignment explanation
Indices: 78951617--78951883 Score: 351
Period size: 94 Copynumber: 2.8 Consensus size: 93
78951607 GATATATTAT
* *
78951617 CGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCATATACACGTGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT--ATG-GCTGATGCATGTCCCAG
*
78951682 ACATGTCTTACACTGGCACTCATCTCTGTGC
63 ACATGTCTTACACTAGCACTCATCTCTGTGC
* * *
78951713 CGATGTCATGTCCCAGATATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TATGGCTGATGCATGTCCCAGAC
* *
78951778 ATGTCTTACACTAGCCCTCGT-T-TGGATGC
65 ATGTCTTACACTAGCACTCATCTCT-G-TGC
* *
78951807 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAGA-GCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATATGG-CTGATGCATGTCCCAGA
78951871 CATGTCTTACACT
64 CATGTCTTACACT
78951884 GGCGTACAAA
Statistics
Matches: 153, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
92 1 0.01
93 2 0.01
94 106 0.69
95 6 0.04
96 37 0.24
97 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGGCTGATGCATGTCCCAGACA
TGTCTTACACTAGCACTCATCTCTGTGC
Found at i:78953152 original size:20 final size:23
Alignment explanation
Indices: 78953102--78953153 Score: 74
Period size: 20 Copynumber: 2.4 Consensus size: 23
78953092 GGCTGTTATA
78953102 TTATGTGTCATATTTCAGGCACC
1 TTATGTGTCATATTTCAGGCACC
*
78953125 TCATGTGTC-T-TTTCAGGCA-C
1 TTATGTGTCATATTTCAGGCACC
78953145 TTATGTGTC
1 TTATGTGTC
78953154 GTATACTGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 9 0.33
21 9 0.33
22 1 0.04
23 8 0.30
ACGTcount: A:0.17, C:0.21, G:0.19, T:0.42
Consensus pattern (23 bp):
TTATGTGTCATATTTCAGGCACC
Found at i:78957167 original size:45 final size:41
Alignment explanation
Indices: 78957116--78957211 Score: 111
Period size: 45 Copynumber: 2.2 Consensus size: 41
78957106 ATTTGTTTTT
* * *
78957116 GTGTAAGACCACGTCTAGGACGTTGGCATCGATATATGTGGTTAC
1 GTGTAAGACCACGTCTAGGACATCGGCATCG-TAT-T-TGATT-C
* *
78957161 GTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTC
1 GTGTAAGACCACGTCTAGGACATCGGCATCGTATTTGATTC
78957202 GTGTAAGACC
1 GTGTAAGACC
78957212 TTGTCTGGGA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 11 0.24
42 4 0.09
43 1 0.02
44 3 0.07
45 27 0.59
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCACGTCTAGGACATCGGCATCGTATTTGATTC
Found at i:78962208 original size:27 final size:27
Alignment explanation
Indices: 78962176--78962365 Score: 157
Period size: 27 Copynumber: 7.0 Consensus size: 27
78962166 CCTTAATCGA
*
78962176 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * **
78962203 TGAAATGATTGTTTTGCCCTTATGACG
1 TAAAATGACTGTTTTGCCCTTATGTGG
**
78962230 TAAAATGACTGTTTTGCCCTTATGACG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* **
78962257 TAAAATAACTGTTTTGCCCTTGACTGTTT
1 TAAAATGACTGTTTTGCCCTT-A-TGTGG
**** *
78962286 TCCCCTTGACT-TTTTGCCCTTATGTTG
1 T-AAAATGACTGTTTTGCCCTTATGTGG
* * *
78962313 TAAAATGACTGTTTTTCCCTTTTATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
78962340 TAAGATGACTATTTTACCCTTATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
78962366 ATGTATGTTT
Statistics
Matches: 129, Mismatches: 30, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
26 5 0.04
27 105 0.81
28 2 0.02
29 13 0.10
30 4 0.03
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.43
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:78962305 original size:14 final size:15
Alignment explanation
Indices: 78962264--78962306 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
78962254 ACGTAAAATA
78962264 ACTGTTTTGCCCTTG
1 ACTGTTTTGCCCTTG
*
78962279 ACTGTTTTCCCCTTG
1 ACTGTTTTGCCCTTG
78962294 ACT-TTTTGCCCTT
1 ACTGTTTTGCCCTT
78962307 ATGTTGTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 9 0.35
15 17 0.65
ACGTcount: A:0.07, C:0.30, G:0.14, T:0.49
Consensus pattern (15 bp):
ACTGTTTTGCCCTTG
Found at i:78966932 original size:80 final size:80
Alignment explanation
Indices: 78966823--78967100 Score: 407
Period size: 80 Copynumber: 3.5 Consensus size: 80
78966813 CCAAATCACC
* * *
78966823 GAAATA-CCTCTGGTTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGT
1 GAAATACCCTC-GATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACTGAAATACCGT
78966887 TGATTGTAAAATTACT
65 TGATTGTAAAATTACT
* * * * *
78966903 GAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAATTTACAAAGTTACTGAAATACCCTT
1 GAAATACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACTGAAATACCGTT
*
78966968 GATTTGCAAAATTACT
66 GA-TTGTAAAATTACT
* *
78966984 GAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGAAATACCGTT
1 GAAATACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACTGAAATACCGTT
*
78967049 GATTGTAAAATTATT
66 GATTGTAAAATTACT
78967064 GAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCT
1 GAAATACCCTCGATTTGTAAAATTACC-AAAGTACCCT
78967101 TGTAGGGTAT
Statistics
Matches: 176, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
80 97 0.55
81 79 0.45
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (80 bp):
GAAATACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACTGAAATACCGTT
GATTGTAAAATTACT
Found at i:78966972 original size:54 final size:53
Alignment explanation
Indices: 78966837--78967100 Score: 291
Period size: 53 Copynumber: 4.9 Consensus size: 53
78966827 TACCTCTGGT
* * * * * * **
78966837 TTGTAAAATTAC-CAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTTGA
1 TTGTAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACCGAAATACCCTCAA
*
78966890 TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAA
1 TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAA
* * * *
78966943 TT-TACAAAGTTACTGAAATACCCTTGATTTGCAAAATTACTGAAATACCCTCGAC
1 TTGTA-AAA-TTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-AA
* * * **
78966998 TTGTAAAATTAC-CAAAGTACCCTCGATTTATAAAATTACCGAAATACCGTTGA
1 TTGTAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACCGAAATACCCTCAA
*
78967051 TTGTAAAATTATTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCT
1 TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCT
78967101 TGTAGGGTAT
Statistics
Matches: 177, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
52 2 0.01
53 90 0.51
54 77 0.44
55 6 0.03
56 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.31
Consensus pattern (53 bp):
TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAA
Found at i:78967099 original size:27 final size:27
Alignment explanation
Indices: 78966815--78967100 Score: 294
Period size: 27 Copynumber: 10.7 Consensus size: 27
78966805 TTAGTTTACC
* *
78966815 AAATCACCGAAATA-CCTCTGGTTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
* * *
78966842 AAATTACC-AAAGTACCCCCGGTTTATA
1 AAATTACCGAAA-TACCCTCGATTTGTA
* * *
78966869 AAATTACTGAAATACCGTTGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
78966895 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * **
78966922 AAATTACCAAAATACCCTCAATTTACA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
78966949 AAGTTACTGAAATACCCTTGATTTGCA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
78966976 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
78967003 AAATTACC-AAAGTACCCTCGATTTATA
1 AAATTACCGAAA-TACCCTCGATTTGTA
* *
78967030 AAATTACCGAAATACCGTTGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
**
78967056 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
78967083 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
78967101 TGTAGGGTAT
Statistics
Matches: 214, Mismatches: 38, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
26 50 0.23
27 155 0.72
28 9 0.04
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:78967117 original size:27 final size:27
Alignment explanation
Indices: 78967084--78967333 Score: 270
Period size: 27 Copynumber: 9.3 Consensus size: 27
78967074 CGATTTGTAA
*
78967084 AATTACCGAAATACCCTTGTAGGGTAT
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
78967111 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
78967138 AATTACTGAAATAGCCTTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
78967165 AATTACTGAAACACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
78967192 AATTATCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
***
78967219 AATTATTAAAATACCCCTT-TAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
78967246 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* **
78967273 AAATATTGAAATA-CCTCTGTAGGGTAG
1 AATTACCGAAATACCCT-TGTAGGGTAG
* * * *
78967300 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
78967327 AATTACC
1 AATTACC
78967334 ATTTTGCCCC
Statistics
Matches: 187, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 8 0.04
27 172 0.92
28 7 0.04
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:78967124 original size:161 final size:160
Alignment explanation
Indices: 78966837--78967126 Score: 447
Period size: 161 Copynumber: 1.8 Consensus size: 160
78966827 TACCTCTGGT
* *
78966837 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTTGATTGTAAAATTAC
1 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCGAAATACCGTTGATTGTAAAATTAC
** *
78966902 TGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAATTTACAAAGTTACTGAAATACCCT
66 TGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAAGGTACAAAG-TACCGAAATACCCT
78966967 TGATTTGCAAAATTACTGAAATACCCTCGAC
130 TGATTTGCAAAATTACTGAAATACCCTCGAC
* *
78966998 TTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGAAATACCGTTGATTGTAAAATTAT
1 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCGAAATACCGTTGATTGTAAAATTAC
* * * *
78967063 TGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGTAGGGTATAAA-TACCGAAATACCC
66 TGAAATACCCTCGATTTGTAAAATTACCAAAATACCC-T-CAAGGTACAAAGTACCGAAATACCC
78967127 CTGTAGGGTA
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
161 109 0.94
162 1 0.01
163 6 0.05
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (160 bp):
TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCGAAATACCGTTGATTGTAAAATTAC
TGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAAGGTACAAAGTACCGAAATACCCTT
GATTTGCAAAATTACTGAAATACCCTCGAC
Found at i:78967170 original size:81 final size:80
Alignment explanation
Indices: 78967080--78967333 Score: 339
Period size: 81 Copynumber: 3.1 Consensus size: 80
78967070 CCCTCGATTT
* *
78967080 GTAAAATTACCGAAATACCCTTGTAGGGTATAAATACCGAAATACCCCTGTAGGGTAGAATTACT
1 GTAAAATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAGAATTA-T
*
78967145 GAAATAGCCTTGTAGG
65 GAAATACCCTTGTAGG
* * * * *
78967161 GTAAAATTACTGAAACACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGATAGAATTATT
1 GTAAAATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAGAATTA-T
*
78967226 AAAATACCCCTT-TAGG
65 GAAATA-CCCTTGTAGG
* * *
78967242 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATTGAAATACCTCTGTAGGGTAGAATTATC
1 GTAAAATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAGAATTAT-
* *
78967307 GAGATACCCTTGTGGG
65 GAAATACCCTTGTAGG
78967323 GTAAAATTACC
1 GTAAAATTACC
78967334 ATTTTGCCCC
Statistics
Matches: 148, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
80 6 0.04
81 138 0.93
82 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (80 bp):
GTAAAATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAGAATTATG
AAATACCCTTGTAGG
Found at i:78968027 original size:27 final size:26
Alignment explanation
Indices: 78967983--78968034 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
78967973 CTCGCTACAA
*
78967983 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
78968010 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
78968035 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:78968074 original size:2 final size:2
Alignment explanation
Indices: 78968067--78968096 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
78968057 GCTTCGCCAC
78968067 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78968097 CTGTTCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78970675 original size:46 final size:46
Alignment explanation
Indices: 78970625--78970800 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 46
78970615 TGGTTGAGCA
78970625 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * * * **
78970671 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAATG
*
78970717 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
78970764 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78970801 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
46 73 0.67
47 36 0.33
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78970783 original size:93 final size:93
Alignment explanation
Indices: 78970624--78970792 Score: 311
Period size: 93 Copynumber: 1.8 Consensus size: 93
78970614 ATGGTTGAGC
*
78970624 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
78970689 AGTCCGAGTTCGAGAGATGTAACTAGGG
66 AGTCCGAGTTCGAGAGATGTAACTAGGG
* *
78970717 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
78970782 AGTCCGAGTTC
66 AGTCCGAGTTC
78970793 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGAGAGATGTAACTAGGG
Found at i:78973671 original size:29 final size:29
Alignment explanation
Indices: 78973636--78973709 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
78973626 GTTGTGAGAT
* *
78973636 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
78973665 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
78973694 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78973710 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:78977258 original size:48 final size:48
Alignment explanation
Indices: 78977206--78977340 Score: 164
Period size: 48 Copynumber: 2.8 Consensus size: 48
78977196 CTTGCACACT
* *
78977206 AAGTGCCAATATCATGTCCCGAAGCCAACTCAATATATCTCACACCCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATATCTCACACCCA
* * * * *
78977254 AAGTGCTAATATCATGGCTCGAAGCCAAATCAATGA-AGCTCGCACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAAT-ATATCTCACACCCA
* * *
78977302 AAGTGCCAATATCATGGGCTGAAGCCAAATCAATGTATC
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATATC
78977341 CCCTAATGAC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 71 0.99
49 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATATCTCACACCCA
Found at i:78985118 original size:50 final size:50
Alignment explanation
Indices: 78984987--78985135 Score: 232
Period size: 48 Copynumber: 3.0 Consensus size: 50
78984977 TGTGAATGTG
78984987 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
* *
78985037 -A-GTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATA
* *
78985085 TATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
78985135 T
1 T
78985136 GTAGGCGATG
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 43 0.48
49 2 0.02
50 42 0.47
51 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (50 bp):
TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
Found at i:78985153 original size:50 final size:50
Alignment explanation
Indices: 78984991--78985159 Score: 190
Period size: 48 Copynumber: 3.4 Consensus size: 50
78984981 AATGTGTATA
*
78984991 TATGAGATAT--GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAG
1 TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
78985039 TATGAGATATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATA
1 TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATG
* *
78985089 TATAAGATAT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* * *
78985137 TAGGCGATGTGCGTATATTGTGG
1 TATGAGATATGCGTATA-TGTGG
78985160 CCGAACAACC
Statistics
Matches: 101, Mismatches: 9, Indels: 19
0.78 0.07 0.15
Matches are distributed among these distances:
47 1 0.01
48 47 0.47
49 4 0.04
50 43 0.43
51 6 0.06
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (50 bp):
TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:78985393 original size:37 final size:37
Alignment explanation
Indices: 78985285--78985393 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
78985275 GGAAATATAT
* *
78985285 TCCGGGTAAGATCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGAACCGATGACTACGTGTGGAGATTTTG
*
78985322 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGAACCGATGACTACGTGTGGAGATTTTG
* *
78985359 TCCGGGTAAGAACCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGAACCGATGACTACGTGTGGAGATTT
78985394 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGAACCGATGACTACGTGTGGAGATTTTG
Found at i:78987021 original size:40 final size:40
Alignment explanation
Indices: 78986661--78987009 Score: 587
Period size: 40 Copynumber: 8.8 Consensus size: 40
78986651 GAGAATTGAG
*
78986661 AGTGATATA-CCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
78986700 AGTGATGTATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
78986739 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
78986779 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
78986819 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
78986859 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
78986899 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
78986939 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
78986978 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
78987010 ATCATGCTGG
Statistics
Matches: 296, Mismatches: 11, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
39 81 0.27
40 215 0.73
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:78991344 original size:50 final size:50
Alignment explanation
Indices: 78991212--78991360 Score: 187
Period size: 48 Copynumber: 3.0 Consensus size: 50
78991202 TGTGAATGTG
* *
78991212 TATATATGAGATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTCAAATA
* * *
78991262 -A-GTATGAGATATGCATATGTGGTCAAGCCGAATGG-TCAATGTCAAATA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTCAAATA
* * * *
78991310 TATATATAAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTCAAATA
78991360 T
1 T
78991361 GTAGGTGATG
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 40 0.48
49 2 0.02
50 39 0.47
51 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (50 bp):
TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTCAAATA
Found at i:78991618 original size:37 final size:37
Alignment explanation
Indices: 78991510--78991618 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
78991500 GGAAATATAT
*
78991510 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
78991547 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
78991584 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
78991619 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:78994667 original size:13 final size:14
Alignment explanation
Indices: 78994635--78994673 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
78994625 ACGAAAATTT
78994635 CACAAATATAAATTCA
1 CACAAA-ATAAA-TCA
78994651 CACAAAATAAA-CA
1 CACAAAATAAATCA
78994664 CACAAAATAA
1 CACAAAATAA
78994674 TTTTTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 12 0.52
15 5 0.22
16 6 0.26
ACGTcount: A:0.64, C:0.21, G:0.00, T:0.15
Consensus pattern (14 bp):
CACAAAATAAATCA
Found at i:78997658 original size:41 final size:40
Alignment explanation
Indices: 78997601--78997686 Score: 127
Period size: 41 Copynumber: 2.1 Consensus size: 40
78997591 ACGACATATC
*
78997601 GGCTAAATGTGGCACTTAGTGTGTAGTTCGAAAATAGCTTT
1 GGCTAAATGTGGCACTTAGTGTGCAGTTCG-AAATAGCTTT
* * *
78997642 GGCTAAATGTGGCACTTAGTGTGCGGTTCGACATTGCTTT
1 GGCTAAATGTGGCACTTAGTGTGCAGTTCGAAATAGCTTT
78997682 GGCTA
1 GGCTA
78997687 TGTACGGCAC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 13 0.32
41 28 0.68
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (40 bp):
GGCTAAATGTGGCACTTAGTGTGCAGTTCGAAATAGCTTT
Found at i:78997696 original size:40 final size:40
Alignment explanation
Indices: 78997601--78997706 Score: 117
Period size: 41 Copynumber: 2.6 Consensus size: 40
78997591 ACGACATATC
**
78997601 GGCTAAATGTGGCACTTAGTGTGTAGTTCGAAAATAGCTTT
1 GGCT-AATGTGGCACTTAGTGTGCGGTTCGAAAATAGCTTT
* *
78997642 GGCTAAATGTGGCACTTAGTGTGCGGTTCG-ACATTGCTTT
1 GGCT-AATGTGGCACTTAGTGTGCGGTTCGAAAATAGCTTT
*
78997682 GGCT-ATGTACGGCACGTAGTGTGCG
1 GGCTAATGT--GGCACTTAGTGTGCG
78997707 AGATATTGAG
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
38 4 0.07
40 26 0.45
41 28 0.48
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.32
Consensus pattern (40 bp):
GGCTAATGTGGCACTTAGTGTGCGGTTCGAAAATAGCTTT
Found at i:78997732 original size:28 final size:28
Alignment explanation
Indices: 78997692--78997794 Score: 125
Period size: 28 Copynumber: 3.7 Consensus size: 28
78997682 GGCTATGTAC
*
78997692 GGCACGTAGTGTGCGAGATATTGAGTAT
1 GGCACTTAGTGTGCGAGATATTGAGTAT
78997720 GGCACTTAGTGTGCGAGATATTGAGTAT
1 GGCACTTAGTGTGCGAGATATTGAGTAT
* * * * * * *
78997748 GGAACTTAATGTGCGAAACACTAAGAAT
1 GGCACTTAGTGTGCGAGATATTGAGTAT
*
78997776 GGCATTTAGTGTGCGAGAT
1 GGCACTTAGTGTGCGAGAT
78997795 CTCAAATATG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGATATTGAGTAT
Found at i:78999469 original size:24 final size:24
Alignment explanation
Indices: 78999436--78999489 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
78999426 AAGGCTATTA
* *
78999436 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTAATAAG
* *
78999460 GGAGAGGATTTAGGAGCTAATTAG
1 GGAGAAGATTTAGGAGCTAATAAG
78999484 GGAGAA
1 GGAGAA
78999490 CGGTGTTGGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTAATAAG
Found at i:79000488 original size:8 final size:8
Alignment explanation
Indices: 79000475--79000511 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
79000465 CTAGATAGGC
79000475 AAAAGCCG
1 AAAAGCCG
79000483 AAAAGCCG
1 AAAAGCCG
*
79000491 AAAAGGCG
1 AAAAGCCG
*
79000499 AAATGCCG
1 AAAAGCCG
79000507 AAAAG
1 AAAAG
79000512 TTGGTGTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.51, C:0.19, G:0.27, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:79000970 original size:27 final size:27
Alignment explanation
Indices: 79000928--79001038 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
79000918 AGGAAGCGTC
* *
79000928 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* * *
79000955 CTGCTGGCTCTCCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
79000982 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
79001009 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
79001035 CTGG
1 CTGG
79001039 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 13 0.18
27 60 0.82
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:79004725 original size:27 final size:27
Alignment explanation
Indices: 79004683--79004793 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
79004673 AGGAAGCGTC
* *
79004683 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* * *
79004710 CTGCTGGCTCTCCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
79004737 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
79004764 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
79004790 CTGG
1 CTGG
79004794 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 13 0.18
27 60 0.82
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:79007737 original size:123 final size:123
Alignment explanation
Indices: 79007518--79007856 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
79007508 GAATTATGTG
79007518 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
79007583 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
79007641 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
79007706 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
79007764 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
79007829 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
79007857 AATTATATCC
Statistics
Matches: 208, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 208 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:79007880 original size:40 final size:40
Alignment explanation
Indices: 79007825--79008068 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
79007815 TGAATGATAC
* * * * **
79007825 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
79007865 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
79007905 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
79007945 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
79007985 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
79008025 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
79008065 CCGG
1 CCGG
79008069 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:79015367 original size:123 final size:123
Alignment explanation
Indices: 79015149--79015486 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
79015139 GAATTATGTG
79015149 AAATGAAATATGGATGTGTAATGATTATTGA-ATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
79015213 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
79015271 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
79015336 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
79015394 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
79015459 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
79015487 AATTATATCC
Statistics
Matches: 207, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
122 31 0.15
123 176 0.85
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:79015510 original size:40 final size:40
Alignment explanation
Indices: 79015455--79015682 Score: 267
Period size: 40 Copynumber: 5.7 Consensus size: 40
79015445 TGAATGATAC
* * * * *
79015455 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
* * * * *
79015495 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
* * *
79015535 CCGGGCTAATACCCGAAGGCATTTGCGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
* * *
79015575 TCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
* *
79015615 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
* * *
79015655 CCGGGCTAAGACCTGAGGGCATTCGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
79015683 GTGTGGTTAT
Statistics
Matches: 164, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 164 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
Found at i:79015676 original size:120 final size:120
Alignment explanation
Indices: 79015456--79015677 Score: 302
Period size: 120 Copynumber: 1.9 Consensus size: 120
79015446 GAATGATACC
* *
79015456 CGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAATTGT
1 CGGGCTAAGTCCCGAAGACATTTATGCAAGTAATTATATCCGGGCTAAGACCCGAAGGCAATTGT
* * *
79015521 GCTAGTGACTATATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTTGTTATATT
66 GCAAGTCACTATATCCGGGCTAAGACCCGAAGGCATTTGCGCAAGTTGTTATATT
* * ** * *
79015576 CGGGCTAA-TACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTG
1 CGGGCTAAGT-CCCGAAGACATTTATGCAAGTAATTATATCCGGGCTAAGACCCGAAGGCAATTG
* * *
79015640 TGCAAGTCATTATATCCGGGCTAAGACCTGAGGGCATT
65 TGCAAGTCACTATATCCGGGCTAAGACCCGAAGGCATT
79015678 CGTGCGTGTG
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
119 1 0.01
120 86 0.99
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGACATTTATGCAAGTAATTATATCCGGGCTAAGACCCGAAGGCAATTGT
GCAAGTCACTATATCCGGGCTAAGACCCGAAGGCATTTGCGCAAGTTGTTATATT
Found at i:79019385 original size:11 final size:11
Alignment explanation
Indices: 79019369--79019393 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79019359 TTATATATAC
79019369 TAATAAAATAA
1 TAATAAAATAA
79019380 TAATAAAATAA
1 TAATAAAATAA
79019391 TAA
1 TAA
79019394 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Done.