Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 261 of 335
Found at i:79021500 original size:33 final size:33
Alignment explanation
Indices: 79021429--79021493 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
79021419 TCTTAGCACT
**
79021429 TATCAGAATCAATTGGGCCTAGCCCATTCTCAA
1 TATCAGAATCAATTGGGCCTAGCCCATTAACAA
79021462 TATCAGTAA-CAATTGGGCCTAGCCCATTAACA
1 TATCAG-AATCAATTGGGCCTAGCCCATTAACA
79021494 GAATCAGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.93
34 2 0.07
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (33 bp):
TATCAGAATCAATTGGGCCTAGCCCATTAACAA
Found at i:79021523 original size:27 final size:27
Alignment explanation
Indices: 79021475--79021526 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
79021465 CAGTAACAAT
*
79021475 TGGGCCTAGCCCATTAACAGAATCAGG
1 TGGGCCTAGCCCAATAACAGAATCAGG
*
79021502 TGGGCCTAAGCCCAAT-ATAGAATCA
1 TGGGCCT-AGCCCAATAACAGAATCA
79021527 ATATCAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.19
Consensus pattern (27 bp):
TGGGCCTAGCCCAATAACAGAATCAGG
Found at i:79021795 original size:22 final size:22
Alignment explanation
Indices: 79021764--79021809 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
79021754 ATAAGTATCG
*
79021764 CAGAAAGGCTGAAAGCCTTGTA
1 CAGAAAGGCTAAAAGCCTTGTA
*
79021786 CAGAACGGCTAAAAGCCTTGTA
1 CAGAAAGGCTAAAAGCCTTGTA
79021808 CA
1 CA
79021810 AAATGACTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (22 bp):
CAGAAAGGCTAAAAGCCTTGTA
Found at i:79038510 original size:24 final size:24
Alignment explanation
Indices: 79038472--79038524 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
79038462 CCAACACCGT
*
79038472 TCTCCCTAATCAACTCCTAAATCC
1 TCTCCCTAATCAACTCCCAAATCC
* * *
79038496 TCTCCCTTATGAACTCCCAAATCT
1 TCTCCCTAATCAACTCCCAAATCC
79038520 TCTCC
1 TCTCC
79038525 TGACAGCCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.25, C:0.42, G:0.02, T:0.32
Consensus pattern (24 bp):
TCTCCCTAATCAACTCCCAAATCC
Found at i:79043694 original size:15 final size:17
Alignment explanation
Indices: 79043664--79043703 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
79043654 AAAAATCGAG
79043664 TTTGTTTTAAAAAAAT-
1 TTTGTTTTAAAAAAATC
*
79043680 TTTGTTTT-CAAAAATC
1 TTTGTTTTAAAAAAATC
79043696 TTTGTTTT
1 TTTGTTTT
79043704 TGTAAACCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (17 bp):
TTTGTTTTAAAAAAATC
Found at i:79044654 original size:27 final size:26
Alignment explanation
Indices: 79044600--79044683 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 26
79044590 AGCATGGCTG
* * *
79044600 CCAGAACAAATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
79044626 CCAGAACAGATAATTGTGGTAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
*
79044653 CCAGAACAGATAAATGTGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
79044680 CCAG
1 CCAG
79044684 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 12 0.24
27 36 0.72
28 2 0.04
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:79046154 original size:24 final size:24
Alignment explanation
Indices: 79046115--79046215 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
79046105 CCAACACCGT
*
79046115 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
79046139 TCTCCCTTATCCGCTCCTAAACCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
79046163 TCTCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
79046187 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
79046211 TCTCC
1 TCTCC
79046216 TGACAGCTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 68 1.00
ACGTcount: A:0.21, C:0.45, G:0.03, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:79051501 original size:31 final size:31
Alignment explanation
Indices: 79051449--79051526 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
79051439 CTCGACATAT
79051449 ACTGGGCCGAAGCC-TTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
79051479 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
79051510 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
79051527 ATTGTAAACG
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 14 0.30
31 32 0.70
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:79051610 original size:42 final size:42
Alignment explanation
Indices: 79051550--79051641 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
79051540 TGGGCCATAG
* *
79051550 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGAAA
*
79051592 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGAAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGAAA
*
79051634 GCCTATTT
1 GCCCATTT
79051642 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGAAA
Found at i:79051814 original size:25 final size:25
Alignment explanation
Indices: 79051786--79051856 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
79051776 CCTCTTTAAT
**
79051786 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAATA
79051811 AACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATA
79051836 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
79051857 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
25 33 0.77
26 10 0.23
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAATA
Found at i:79051931 original size:20 final size:20
Alignment explanation
Indices: 79051906--79051981 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
79051896 TTATGAATTC
*
79051906 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
79051926 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
79051946 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
79051966 ATCATGT--ATATCATAC
1 ATCATGTGCATATCATAC
79051982 CCCACGTATC
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 41 0.79
21 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79051937 original size:11 final size:11
Alignment explanation
Indices: 79051906--79051961 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
79051896 TTATGAATTC
79051906 ATCATGTGCAT
1 ATCATGTGCAT
* *
79051917 TTCA--TACAT
1 ATCATGTGCAT
79051926 ATCATGTGCAT
1 ATCATGTGCAT
79051937 ATCA--TGCAT
1 ATCATGTGCAT
79051946 ATCATGTGCAT
1 ATCATGTGCAT
79051957 ATCAT
1 ATCAT
79051962 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:79052036 original size:25 final size:25
Alignment explanation
Indices: 79052008--79052055 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
79051998 ATAATTAAAC
*
79052008 CCTAGGGGCAAAATAGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
79052033 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
79052056 CACATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:79052688 original size:27 final size:27
Alignment explanation
Indices: 79052658--79052722 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
79052648 GGGCATATTC
79052658 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
79052685 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
* *
79052712 ATCTTTTTACC
1 GTCATTTTACC
79052723 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:79052806 original size:27 final size:27
Alignment explanation
Indices: 79052753--79053058 Score: 165
Period size: 27 Copynumber: 11.3 Consensus size: 27
79052743 TTTCATCCTA
* * * *
79052753 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
79052780 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
79052807 TAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
*
79052836 CAAGGGTATTTCT-GTAATTTTGTAAA-
1 CAAGGGTATTT-TGGTAATTTTATAAAC
** * *
79052862 TTAGAGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTATAAAC
** * * * *
79052890 TGAGTGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
79052917 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * * * *
79052944 CAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
79052971 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
79052997 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
79053024 CAAAGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
79053051 CGAGGGTA
1 CAAGGGTA
79053059 AAACAGTAAT
Statistics
Matches: 218, Mismatches: 50, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
26 26 0.12
27 160 0.73
28 18 0.08
29 14 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:79052925 original size:54 final size:53
Alignment explanation
Indices: 79052867--79053058 Score: 206
Period size: 54 Copynumber: 3.6 Consensus size: 53
79052857 GTAAATTAGA
* * * *
79052867 GGTATTTTGGTAATTTTACAAATTGAGTGTATTTCGGTAATTTCACAAACCAG
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAG
* * * *
79052920 TGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTAGCAATTTTACAGACCAG
1 -GGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAACCAG
** ** *
79052974 GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAA
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC-AG
* **
79053028 GGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGTATTTTGGTAATTTTACAAATCGAGGGTA
79053059 AAACAGTAAT
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
53 41 0.36
54 72 0.64
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
GGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAG
Found at i:79053347 original size:27 final size:27
Alignment explanation
Indices: 79053037--79053341 Score: 430
Period size: 27 Copynumber: 11.3 Consensus size: 27
79053027 AGGTATTTTA
* *
79053037 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
** * *
79053064 GTAATTCTCCAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
79053091 GTAATTCTGTAAATCAAGGGTGAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
79053118 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
79053145 GTAATTCTATAAATCGAGAGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
79053172 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
79053199 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
79053226 ATAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
79053253 GTAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
79053280 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
79053307 ATAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
79053334 GTAATTCT
1 GTAATTCT
79053342 ACAAATTGAG
Statistics
Matches: 251, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 251 1.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:79056545 original size:3 final size:3
Alignment explanation
Indices: 79056537--79056621 Score: 170
Period size: 3 Copynumber: 28.3 Consensus size: 3
79056527 TTTCTACTAT
79056537 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
79056585 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
79056622 AATGTAACAT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 82 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:79061160 original size:40 final size:39
Alignment explanation
Indices: 79061105--79061292 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 39
79061095 TGAATGATAC
* * * *
79061105 CCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
*
79061145 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
**
79061185 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * *
79061225 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * *
79061265 CCAGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
79061293 TTGTGGTTAT
Statistics
Matches: 131, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 127 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:79061238 original size:80 final size:80
Alignment explanation
Indices: 79061105--79061285 Score: 247
Period size: 80 Copynumber: 2.3 Consensus size: 80
79061095 TGAATGATAC
* * *
79061105 CCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGTTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
79061170 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
* *
79061185 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGTTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTC
79061249 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
*
79061265 CCAGGTTAAGACCCGAAGGCA
1 CCGGGTTAAGACCCGAAGGCA
79061286 ATTGTGCTTG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 86 0.98
81 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:79061536 original size:24 final size:24
Alignment explanation
Indices: 79061515--79061567 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
79061505 GTTGATGAAG
79061515 TGTGAAGTAAGTATGATTATGAGAA
1 TGTGAAGTAA-TATGATTATGAGAA
* *
79061540 TGTGTATTAATATGATTATGAGAA
1 TGTGAAGTAATATGATTATGAGAA
79061564 TGTG
1 TGTG
79061568 TATTAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (24 bp):
TGTGAAGTAATATGATTATGAGAA
Found at i:79061568 original size:24 final size:24
Alignment explanation
Indices: 79061526--79061575 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
79061516 GTGAAGTAAG
79061526 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
79061550 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
79061574 TA
1 TA
79061576 AAGTGATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (24 bp):
TATGATTATGAGAATGTGTATTAA
Found at i:79066704 original size:40 final size:39
Alignment explanation
Indices: 79066659--79066788 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
79066649 CGGAATATAA
79066659 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
79066699 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
79066739 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
79066779 CCGGATATAA
1 CCGGATATAA
79066789 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79066803 original size:40 final size:40
Alignment explanation
Indices: 79066675--79066826 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
79066665 ATAACCATGT
* * *
79066675 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
79066715 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
79066755 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
79066795 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
79066827 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:79066809 original size:80 final size:80
Alignment explanation
Indices: 79066675--79066824 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
79066665 ATAACCATGT
*
79066675 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
79066739 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
79066755 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
79066818 CCCGGAT
64 CCCGGAT
79066825 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:79071238 original size:9 final size:9
Alignment explanation
Indices: 79071226--79071302 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
79071216 TTTGATAAAC
79071226 ATGATATGT
1 ATGATATGT
*
79071235 ATGATATGCAC
1 ATGATATG--T
79071246 ATGATATGT
1 ATGATATGT
*
79071255 ATGATATGCAC
1 ATGATATG--T
*
79071266 ATGACATGT
1 ATGATATGT
*
79071275 ATGATATGCAC
1 ATGATATG--T
79071286 ATGATATGT
1 ATGATATGT
79071295 ATGATATG
1 ATGATATG
79071303 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:79071251 original size:11 final size:11
Alignment explanation
Indices: 79071235--79071306 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
79071225 CATGATATGT
79071235 ATGATATGCAC
1 ATGATATGCAC
*
79071246 ATGATATG--T
1 ATGATATGCAC
79071255 ATGATATGCAC
1 ATGATATGCAC
* *
79071266 ATGACATG--T
1 ATGATATGCAC
79071275 ATGATATGCAC
1 ATGATATGCAC
*
79071286 ATGATATG--T
1 ATGATATGCAC
79071295 ATGATATGCAC
1 ATGATATGCAC
79071306 A
1 A
79071307 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79071314 original size:20 final size:20
Alignment explanation
Indices: 79071224--79071306 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
79071214 GATTTGATAA
79071224 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79071244 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79071264 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
79071284 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79071304 ACA
1 ACA
79071307 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79071437 original size:24 final size:24
Alignment explanation
Indices: 79071359--79071544 Score: 242
Period size: 24 Copynumber: 8.0 Consensus size: 24
79071349 GAGGAAGTGA
79071359 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
79071382 TAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79071405 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79071428 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
79071452 AAAAGGGCTTACG-CCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
79071474 TAAAGGGCTTATG-CCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
79071497 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
79071521 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79071545 ATGATAAAGC
Statistics
Matches: 147, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
22 41 0.28
23 42 0.29
24 53 0.36
25 11 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:79071491 original size:69 final size:69
Alignment explanation
Indices: 79071358--79071530 Score: 267
Period size: 69 Copynumber: 2.5 Consensus size: 69
79071348 GGAGGAAGTG
* *
79071358 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAGTTATCAAAGGGCTTATGCCCCAG
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCAGTTATCAAAGGGCTTATGCCCCAG
79071423 TTAT
66 TTAT
* *
79071427 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCAGTTATTAAAGGGCTTATG-CCCA
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCAGTTATCAAAGGGCTTATGCCCCA
79071491 GTTAT
65 GTTAT
*
79071496 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
79071531 AGGCCTCCAG
Statistics
Matches: 95, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
69 58 0.61
70 37 0.39
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (69 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCAGTTATCAAAGGGCTTATGCCCCAG
TTAT
Found at i:79071771 original size:31 final size:31
Alignment explanation
Indices: 79071736--79071799 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
79071726 CATTTACCGT
*
79071736 AAAGGCTTCG-GCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGCG-CCAGTAATATGAAATATGA
**
79071767 AAAGGCTTCGCGCCAGTGTTATGAAATATGA
1 AAAGGCTTCGCGCCAGTAATATGAAATATGA
79071798 AA
1 AA
79071800 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGCGCCAGTAATATGAAATATGA
Found at i:79074818 original size:134 final size:134
Alignment explanation
Indices: 79074604--79075045 Score: 644
Period size: 134 Copynumber: 3.3 Consensus size: 134
79074594 CAAAGTACTC
* * **
79074604 GATTTATAGAATTACCGTTTTACCCTC-AGTTTA-AGAATTACTATTTTACCCT-GA-TTACAGA
1 GATTTACAGAATTACCGTTTTACCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATTTACAGA
* * *
79074665 ATTACCGTTTTACCCTCAGTTTACAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTTT
65 ATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTT
79074730 ACCCT
130 ACCCT
* **
79074735 GATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAA
*
79074800 TTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTA
66 TTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTA
79074865 CCCT
131 CCCT
* * * *
79074869 CAATTTACATAATTACCGTTTTACCC-CGATTTACATAATTATCGTTTTACCCTCGATTTACAGA
1 -GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGA
* *
79074933 ATTACCGTTTTACCCTC-GATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
65 ATTACCGTTTTACCCTCAG-TTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
79074997 TACCCTT
129 TACCC-T
*
79075004 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTAC
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
79075046 TAAAATACCC
Statistics
Matches: 280, Mismatches: 23, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
131 30 0.11
132 17 0.06
133 3 0.01
134 193 0.69
135 37 0.13
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (134 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAA
TTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTA
CCCT
Found at i:79075046 original size:27 final size:27
Alignment explanation
Indices: 79074601--79075045 Score: 600
Period size: 27 Copynumber: 16.7 Consensus size: 27
79074591 TACCAAAGTA
*
79074601 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
79074628 CTC-AGTTTA-AGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
79074654 CT-GA-TTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
79074679 CTC-AGTTTACAGAATTATTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
79074706 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
79074733 CT-GATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
79074759 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
79074786 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
79074813 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
79074840 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
79074867 CTCAATTTACATAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
79074894 C-CGATTTACATAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
79074920 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
79074947 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
79074974 CTCGATTTATAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
79075001 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
79075028 CTCGATTTACAAAATTAC
1 CTCGATTTACAGAATTAC
79075046 TAAAATACCC
Statistics
Matches: 374, Mismatches: 33, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
24 3 0.01
25 18 0.05
26 68 0.18
27 283 0.76
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:79076378 original size:9 final size:9
Alignment explanation
Indices: 79076366--79076442 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
79076356 TTTGATAAAC
79076366 ATGATATGT
1 ATGATATGT
*
79076375 ATGATATGCAC
1 ATGATATG--T
79076386 ATGATATGT
1 ATGATATGT
*
79076395 ATGATATGCAC
1 ATGATATG--T
*
79076406 ATGACATGT
1 ATGATATGT
*
79076415 ATGATATGCAC
1 ATGATATG--T
79076426 ATGATATGT
1 ATGATATGT
79076435 ATGATATG
1 ATGATATG
79076443 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:79076391 original size:11 final size:11
Alignment explanation
Indices: 79076375--79076446 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
79076365 CATGATATGT
79076375 ATGATATGCAC
1 ATGATATGCAC
*
79076386 ATGATATG--T
1 ATGATATGCAC
79076395 ATGATATGCAC
1 ATGATATGCAC
* *
79076406 ATGACATG--T
1 ATGATATGCAC
79076415 ATGATATGCAC
1 ATGATATGCAC
*
79076426 ATGATATG--T
1 ATGATATGCAC
79076435 ATGATATGCAC
1 ATGATATGCAC
79076446 A
1 A
79076447 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79076454 original size:20 final size:20
Alignment explanation
Indices: 79076364--79076446 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
79076354 ATTTTGATAA
79076364 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79076384 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79076404 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
79076424 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79076444 ACA
1 ACA
79076447 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79076557 original size:24 final size:24
Alignment explanation
Indices: 79076501--79076690 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
79076491 GAGGAAGTGA
79076501 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
79076524 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79076548 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79076572 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
79076596 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
79076619 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
79076643 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
79076667 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79076691 ATGATAAAGC
Statistics
Matches: 153, Mismatches: 10, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
23 43 0.28
24 99 0.65
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:79076570 original size:47 final size:47
Alignment explanation
Indices: 79076501--79076669 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
79076491 GAGGAAGTGA
79076501 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
79076548 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
79076596 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
79076643 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
79076670 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 70 0.61
48 45 0.39
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:79076624 original size:71 final size:71
Alignment explanation
Indices: 79076500--79076690 Score: 278
Period size: 71 Copynumber: 2.7 Consensus size: 71
79076490 GGAGGAAGTG
* *
79076500 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
79076565 AGTTAT
66 AGTTAT
* *
79076571 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
79076635 CAGTTAT
65 CAGTTAT
* *
79076642 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
79076691 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:79076919 original size:31 final size:31
Alignment explanation
Indices: 79076884--79076947 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79076874 CGTTTACCGT
*
79076884 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
79076915 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79076946 AA
1 AA
79076948 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79079797 original size:27 final size:27
Alignment explanation
Indices: 79079762--79080210 Score: 564
Period size: 27 Copynumber: 16.7 Consensus size: 27
79079752 CCAAAGTACT
*
79079762 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
79079789 CTC-AGTTTATAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* * *
79079816 CTAGATATACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
79079843 CTC-AGTTTACAGAATTATTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
79079870 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
79079897 CTTGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
79079924 CTCGATTTGTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
79079951 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
79079978 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
79080005 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
79080032 C-CAATTTACATAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
79080058 TTCGATTTACATAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
79080085 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
79080112 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
79080139 CTCGATTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
79080166 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
79080193 CTCGATTTACAAAATTAC
1 CTCGATTTACAGAATTAC
79080211 TAAAATACCC
Statistics
Matches: 374, Mismatches: 41, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
26 26 0.07
27 345 0.92
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:79080247 original size:81 final size:81
Alignment explanation
Indices: 79079728--79080254 Score: 265
Period size: 81 Copynumber: 6.5 Consensus size: 81
79079718 CCAATTACTG
* * * * * *
79079728 AAATGCCCTCGACTTGTAAAATTACCA-AAGTACTCTCGATTTATAGAATTACCGTTTTACCCTC
1 AAATACCCTCGATTTATAGAATTACCACAA-TACCCTCGATTTACAGAATTACCGTTTTACCCTC
* * *
79079792 -AGTTTATAGAATTACTA
65 GA-TTTACAAAATTACCA
*** * * * ***** ** *
79079809 TTTTACCCTAGATATACAGAATTACTGTTTTACCCTC-AGTTTACAGAATTATTGTTTTACCCTT
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGA-TTTACAGAATTACCGTTTTACCCTC
* **
79079873 GATTTACAGAATTACTG
65 GATTTACAAAATTACCA
*** * **** ** * *
79079890 TTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCATTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* *
79079955 ATTTACAGAATTACCG
66 ATTTACAAAATTACCA
*** * * ***
79079971 TTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCC-C
1 AAATACCCTCGA-TTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTC
* * *
79080034 AATTTACATAATTACCG
65 GATTTACAAAATTACCA
*** * * * * ****
79080051 TTTTACCTTCGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
*
79080116 ATTTACAGAATTACCA
66 ATTTACAAAATTACCA
*** * *** * *
79080132 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
*
79080197 ATTTACAAAATTACTA
66 ATTTACAAAATTACCA
* * * * *
79080213 AAATACCCTTGGTTTGT-GAAATTACCGCAATACCCTCAATTT
1 AAATACCCTCGATTTATAG-AATTACCACAATACCCTCGATTT
79080255 GTAAAACTAC
Statistics
Matches: 364, Mismatches: 74, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
80 74 0.20
81 288 0.79
82 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (81 bp):
AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
ATTTACAAAATTACCA
Found at i:79081548 original size:9 final size:9
Alignment explanation
Indices: 79081536--79081612 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
79081526 TTTGATAAAC
79081536 ATGATATGT
1 ATGATATGT
*
79081545 ATGATATGCAC
1 ATGATATG--T
79081556 ATGATATGT
1 ATGATATGT
*
79081565 ATGATATGCAC
1 ATGATATG--T
*
79081576 ATGACATGT
1 ATGATATGT
*
79081585 ATGATATGCAC
1 ATGATATG--T
79081596 ATGATATGT
1 ATGATATGT
79081605 ATGATATG
1 ATGATATG
79081613 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:79081561 original size:11 final size:11
Alignment explanation
Indices: 79081545--79081616 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
79081535 CATGATATGT
79081545 ATGATATGCAC
1 ATGATATGCAC
*
79081556 ATGATATG--T
1 ATGATATGCAC
79081565 ATGATATGCAC
1 ATGATATGCAC
* *
79081576 ATGACATG--T
1 ATGATATGCAC
79081585 ATGATATGCAC
1 ATGATATGCAC
*
79081596 ATGATATG--T
1 ATGATATGCAC
79081605 ATGATATGCAC
1 ATGATATGCAC
79081616 A
1 A
79081617 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79081624 original size:20 final size:20
Alignment explanation
Indices: 79081534--79081616 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
79081524 ATTTTGATAA
79081534 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79081554 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79081574 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
79081594 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79081614 ACA
1 ACA
79081617 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79081727 original size:24 final size:23
Alignment explanation
Indices: 79081671--79081837 Score: 210
Period size: 24 Copynumber: 7.0 Consensus size: 23
79081661 GAGGAAGTGA
79081671 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
79081694 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
79081717 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
79081741 CAAAAGGGCTTACGCCCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
79081765 TAAAGGGCTTATTCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
79081788 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
79081813 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79081837 A
1 A
79081838 TGATAAAGCA
Statistics
Matches: 126, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
23 41 0.33
24 74 0.59
25 11 0.09
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:79081740 original size:47 final size:47
Alignment explanation
Indices: 79081671--79081837 Score: 212
Period size: 47 Copynumber: 3.5 Consensus size: 47
79081661 GAGGAAGTGA
*
79081671 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * *
79081717 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * *
79081765 TAAAGGGCTTATTCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
79081813 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
79081838 TGATAAAGCA
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
47 63 0.61
48 29 0.28
49 12 0.12
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:79081787 original size:71 final size:71
Alignment explanation
Indices: 79081671--79081836 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
79081661 GAGGAAGTGA
* *
79081671 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
79081736 GTTATC
66 GTTATC
* * *
79081742 AAAAGGGCTTACGCCCTAGTTATTAAAGGGCTTATTCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
79081807 GTTATT
66 GTTATC
*
79081813 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
79081837 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 75 0.88
72 10 0.12
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:79082085 original size:31 final size:31
Alignment explanation
Indices: 79082031--79082093 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
79082021 GTTTACCGTG
*
79082031 AAGGCTTCGGCCCAGTAATATGAAATTTGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
*
79082062 AAGGCTTCGGCCCAGT-GTCATGAAATATGAA
1 AAGGCTTCGGCCCAGTAAT-ATGAAATATGAA
79082093 A
1 A
79082094 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:79086636 original size:15 final size:17
Alignment explanation
Indices: 79086616--79086651 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
79086606 TCAAACTTTA
79086616 TAAAAT-TTTATTTTT-
1 TAAAATCTTTATTTTTG
79086631 TAAAATCTTTATTTTTG
1 TAAAATCTTTATTTTTG
79086648 TAAA
1 TAAA
79086652 CCGATTCCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 9 0.47
17 4 0.21
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (17 bp):
TAAAATCTTTATTTTTG
Found at i:79089654 original size:47 final size:47
Alignment explanation
Indices: 79089603--79089748 Score: 197
Period size: 47 Copynumber: 3.1 Consensus size: 47
79089593 TTAGGATTTT
79089603 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
79089650 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
79089697 ATGTGATGAATATGAGATATGC--ATACGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
79089743 ATGTGA
1 ATGTGA
79089749 AATATATATA
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
46 25 0.28
47 59 0.67
48 4 0.05
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:79089656 original size:22 final size:22
Alignment explanation
Indices: 79089628--79089703 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
79089618 ACATGCATAT
79089628 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
79089650 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
79089672 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
79089697 ATGTGAT
1 ATGTGAT
79089704 GAATATGAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:79089777 original size:50 final size:50
Alignment explanation
Indices: 79089706--79089802 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 50
79089696 AATGTGATGA
79089706 ATATGAGATATGCATACGTGGTAAAGCCGAATGG-TCAATGTGAAATATAT
1 ATATGAGATATGCATACGTGGTAAAGCCGAATGGCT-AATGTGAAATATAT
* * *
79089756 ATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
1 ATATGAGATATGCATACGTGGTAAAGCCGAATGGCTAATGTGAAATA
79089803 CGTAGGCGAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 42 0.98
51 1 0.02
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (50 bp):
ATATGAGATATGCATACGTGGTAAAGCCGAATGGCTAATGTGAAATATAT
Found at i:79090003 original size:37 final size:37
Alignment explanation
Indices: 79089953--79090135 Score: 276
Period size: 37 Copynumber: 4.9 Consensus size: 37
79089943 GGAAATATAT
*
79089953 TCCGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
79089990 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
79090027 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * * *
79090064 TTCGAGTAAAACCTGATGACTACGTGTGGAGACTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
79090101 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
79090136 CGTCTGAGCT
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 129 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:79091940 original size:27 final size:27
Alignment explanation
Indices: 79091902--79092013 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
79091892 CAGCATGGCT
* *
79091902 ACCAGA-ATAGATAATGTGGCAGAGTC
1 ACCAGATACAGATAATGTGGCAGAGCC
* *
79091928 ACTAGATACAGATGATCGTGGCAGAGCC
1 ACCAGATACAGATAAT-GTGGCAGAGCC
79091956 ACCAGA-ACAGATATATGTGGCAGAGCC
1 ACCAGATACAGATA-ATGTGGCAGAGCC
*
79091983 ACCAGAT-CAGATAATTGTGGCATAGCC
1 ACCAGATACAGATAA-TGTGGCAGAGCC
79092010 ACCA
1 ACCA
79092014 AGACGCTTCG
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
ACCAGATACAGATAATGTGGCAGAGCC
Found at i:79091968 original size:54 final size:54
Alignment explanation
Indices: 79091902--79092013 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
79091892 CAGCATGGCT
* * * *
79091902 ACCAGAATAGATA-ATGTGGCAGAGTCACTAGATACAGATGATCGTGGCAGAGCC
1 ACCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
* *
79091956 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
79092010 ACCA
1 ACCA
79092014 AGACGCTTCG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (54 bp):
ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:79100385 original size:93 final size:93
Alignment explanation
Indices: 79100273--79100443 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
79100263 GCCCATAAGT
* *
79100273 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79100338 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
79100366 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79100431 CGAGTTCGGATGC
66 CGAGTTCGGATGC
79100444 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79100440 original size:46 final size:46
Alignment explanation
Indices: 79100265--79100440 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
79100255 TGTAACCCGC
* * *
79100265 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
79100311 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
79100361 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
79100404 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
79100441 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:79106089 original size:41 final size:41
Alignment explanation
Indices: 79106028--79106111 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
79106018 AACGTTTGAG
*
79106028 TAGTTTAAGCTGGTCTTCAAAGCTTTCTCGTTTCAAAGGTA
1 TAGTTTAAGCTGGTCGTCAAAGCTTTCTCGTTTCAAAGGTA
79106069 TAGTTTAAGCTGGTCGTCAAAGCTTTCTCGTTTCAAAGGTA
1 TAGTTTAAGCTGGTCGTCAAAGCTTTCTCGTTTCAAAGGTA
79106110 TA
1 TA
79106112 AAGCATCACA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (41 bp):
TAGTTTAAGCTGGTCGTCAAAGCTTTCTCGTTTCAAAGGTA
Found at i:79107072 original size:19 final size:18
Alignment explanation
Indices: 79107043--79107079 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
79107033 TTTAATATAA
79107043 AAATTTACATAAATAAAT
1 AAATTTACATAAATAAAT
79107061 AAATTATACATAAATAAAT
1 AAATT-TACATAAATAAAT
79107080 TTAAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATTTACATAAATAAAT
Found at i:79108852 original size:22 final size:22
Alignment explanation
Indices: 79108815--79108859 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
79108805 GGTTGGTGAT
79108815 TTGGGTTAGGGGTTTATTTAGTAA
1 TTGGGTTA-GGGTTTATTT-GTAA
79108839 TTGGGTT-GGGTTTATTTGTAA
1 TTGGGTTAGGGTTTATTTGTAA
79108860 AAATGTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 10 0.48
24 7 0.33
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (22 bp):
TTGGGTTAGGGTTTATTTGTAA
Found at i:79109373 original size:177 final size:176
Alignment explanation
Indices: 79109068--79109728 Score: 789
Period size: 177 Copynumber: 3.7 Consensus size: 176
79109058 AATAGGACTG
* * * ** * * *
79109068 GTGGCTCAAATCTGCTCCATTGCCAATAGATGGAGATAAGATTTGTAATCCTCAATCTCCTCCAC
1 GTGGCTAAAATCTGCTCCATTGTCAATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCAC
* * * * *
79109133 AACTACTTA-GGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTTAGAAAGATAAGA
66 AGCTGCTTAGGGGATA-AGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTTAGGAAGATAAGA
79109197 CTACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
130 CTACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * *
79109244 GTGGCTAAACTCTGCTCCATTGTCGATACATGGAGTTAAGATTTGCCATCTTCGATCTGC-CTCA
1 GTGGCTAAAATCTGCTCCATTGTCAATACATGGAGATAAGATTTGCCATCTTCGATCTGCTC-CA
*
79109308 CAGCTGCTTAAGGGGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAG
65 CAGCTGCTT-AGGGGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTTAGGAAGATAAG
* ** *
79109373 ACTATAAACGCCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTA
129 ACTACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * *
79109421 GTGGCTAAAATCTGCTCCATTATCAATACATGGAGATAAGATTAT-CCATTTTTGATCTGCTCCA
1 GTGGCTAAAATCTGCTCCATTGTCAATACATGGAGATAAGATT-TGCCATCTTCGATCTGCTCCA
* * * * *
79109485 CCA-CTGCTTAGGAAGATAAGATCGTCAATCTTCGATCTCCTTCCTTGCTACTTTAGGAAGATAA
65 -CAGCTGCTTAGG-GGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTTAGGAAGATAA
* * *
79109549 GACT-C-ATT-CTTCAACCTGCTCTCCTGCTACCTCAGAGAGATAAAGCCA
128 GACTACAATTGC--CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * * ** *
79109597 GTGG-TAAAATCTGTTTCATTGTCTATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCGC
1 GTGGCTAAAATCTGCTCCATTGTCAATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCAC
* ** * *
79109661 TGCAACTTCAGGGCGATAAGATCTTCAACCTTCAGTCTGCTTCCTTGCTACCTTAGGAAGATAAG
66 AGCTGCTT-AGGG-GATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTTAGGAAGATAAG
79109726 ACT
129 ACT
79109729 TGTTTATTGA
Statistics
Matches: 414, Mismatches: 58, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
174 2 0.00
175 56 0.14
176 149 0.36
177 198 0.48
178 9 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (176 bp):
GTGGCTAAAATCTGCTCCATTGTCAATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCAC
AGCTGCTTAGGGGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTTAGGAAGATAAGAC
TACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
Found at i:79109578 original size:43 final size:45
Alignment explanation
Indices: 79109492--79109578 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 45
79109482 CCACCACTGC
* *
79109492 TTAGGAAGATAAGATCGTCAATCTTCGATCTCCTTCCTTGCTACT
1 TTAGGAAGATAAGATCGTCAATCTTCAACCTCCTTCCTTGCTACT
* *
79109537 TTAGGAAGATAAGA-C-TCATTCTTCAACCTGCTCTCC-TGCTAC
1 TTAGGAAGATAAGATCGTCAATCTTCAACCTCCT-TCCTTGCTAC
79109579 CTCAGAGAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 19 0.51
44 4 0.11
45 14 0.38
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.33
Consensus pattern (45 bp):
TTAGGAAGATAAGATCGTCAATCTTCAACCTCCTTCCTTGCTACT
Found at i:79109721 original size:353 final size:353
Alignment explanation
Indices: 79109068--79109728 Score: 883
Period size: 353 Copynumber: 1.9 Consensus size: 353
79109058 AATAGGACTG
* * * *
79109068 GTGGCTCAAATCTGCTCCATTGCCAATAGATGGAGATAAGATTTGTAATCCTCAATCTCCTCCAC
1 GTGGCTAAAATCTGCTCCATTACCAATACATGGAGATAAGATTTGCAATCCTCAATCTCCTCCAC
* *
79109133 AACTACTTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTTAGAAAGATAAGAC
66 AACTACTTAGGGAAATAGATCGTCAATCTTCAGTCTCCTTCCTTGCTACCTTAGAAAGATAAGAC
* * * *
79109198 TACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAACTCTGCTCCA
131 TACAATTGCCAACCTGCTCTCCTGCTACCTCAGAGAGATAAAGCCAGTGGCTAAAATCTGCTCCA
* **
79109263 TTGTCGATACATGGAGTTAAGATTTGCCATCTTCGATCTGCCTCACAGCTGCTTAAGGGGATAAG
196 TTGTCGATACATGGAGATAAGATTCACCATCTTCGATCTGCCTCACAGCTGCTTAAGGGGATAAG
*
79109328 ATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTATAAACGCCAACCTGCT
261 ATCTTCAACCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTATAAACGCCAACCTGCT
79109393 CTCTTGCTACCTTAGAGAGATAAGGCTA
326 CTCTTGCTACCTTAGAGAGATAAGGCTA
* * ** ** *
79109421 GTGGCTAAAATCTGCTCCATTATCAATACATGGAGATAAGATTAT-CCATTTTTGATCTGCTCCA
1 GTGGCTAAAATCTGCTCCATTACCAATACATGGAGATAAGATT-TGCAATCCTCAATCTCCTCCA
* * * *
79109485 CCACTGCTTA-GGAAGATAAGATCGTCAATCTTC-GATCTCCTTCCTTGCTACTTTAGGAAGATA
65 CAACTACTTAGGGAA-AT-AGATCGTCAATCTTCAG-TCTCCTTCCTTGCTACCTTAGAAAGATA
79109548 AGACT-C-ATT-CTTCAACCTGCTCTCCTGCTACCTCAGAGAGATAAAGCCAGTGG-TAAAATCT
127 AGACTACAATTGC--CAACCTGCTCTCCTGCTACCTCAGAGAGATAAAGCCAGTGGCTAAAATCT
* * * *
79109609 GTTTCATTGTCTATACATGGAGATAAGATTCACCATCTTCGATCTG-CTC-C-GCTGCAACTTCA
190 GCTCCATTGTCGATACATGGAGATAAGATTCACCATCTTCGATCTGCCTCACAGCTG---CTTAA
* *
79109671 GGGCGATAAGATCTTCAACCTTCAGTCTGCTTCCTTGCTACCTTAGGAAGATAAGACT
252 GGG-GATAAGATCTTCAACCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACT
79109729 TGTTTATTGA
Statistics
Matches: 267, Mismatches: 31, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
349 4 0.01
350 1 0.00
351 4 0.01
352 61 0.23
353 152 0.57
354 45 0.17
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (353 bp):
GTGGCTAAAATCTGCTCCATTACCAATACATGGAGATAAGATTTGCAATCCTCAATCTCCTCCAC
AACTACTTAGGGAAATAGATCGTCAATCTTCAGTCTCCTTCCTTGCTACCTTAGAAAGATAAGAC
TACAATTGCCAACCTGCTCTCCTGCTACCTCAGAGAGATAAAGCCAGTGGCTAAAATCTGCTCCA
TTGTCGATACATGGAGATAAGATTCACCATCTTCGATCTGCCTCACAGCTGCTTAAGGGGATAAG
ATCTTCAACCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTATAAACGCCAACCTGCT
CTCTTGCTACCTTAGAGAGATAAGGCTA
Found at i:79109985 original size:64 final size:64
Alignment explanation
Indices: 79109884--79110072 Score: 342
Period size: 64 Copynumber: 3.0 Consensus size: 64
79109874 TTCATGTATC
*
79109884 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* *
79109948 ATGCTTATGTAAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
*
79110012 ATGCTTATGTCAAATAATTAGGATGCTATGATAAAAATGAATCAAATGCTCCTAACTAGAT
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGAT
79110073 ATGTTATGAA
Statistics
Matches: 119, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 119 1.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:79116579 original size:19 final size:18
Alignment explanation
Indices: 79116550--79116585 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
79116540 TTTAATATAA
79116550 AAATTTACATAAATAAAC
1 AAATTTACATAAATAAAC
79116568 AAATTATACATAAATAAA
1 AAATT-TACATAAATAAA
79116586 TTTAAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATTTACATAAATAAAC
Found at i:79123661 original size:17 final size:17
Alignment explanation
Indices: 79123641--79123731 Score: 78
Period size: 17 Copynumber: 5.4 Consensus size: 17
79123631 CACACATCAT
79123641 TCACATGCTACCATTTA
1 TCACATGCTACCATTTA
* * * *
79123658 TCACATACAAACA-TCA
1 TCACATGCTACCATTTA
79123674 TTCACATGCTACCATTTA
1 -TCACATGCTACCATTTA
* * * *
79123692 TCACATACAAACA-TCA
1 TCACATGCTACCATTTA
79123708 TTCACATGCTACCATTTA
1 -TCACATGCTACCATTTA
79123726 TCACAT
1 TCACAT
79123732 ACAAACATCA
Statistics
Matches: 54, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
16 4 0.07
17 46 0.85
18 4 0.07
ACGTcount: A:0.36, C:0.30, G:0.03, T:0.31
Consensus pattern (17 bp):
TCACATGCTACCATTTA
Found at i:79123672 original size:34 final size:34
Alignment explanation
Indices: 79123634--79123741 Score: 216
Period size: 34 Copynumber: 3.2 Consensus size: 34
79123624 AGACATCCAC
79123634 ACATCATTCACATGCTACCATTTATCACATACAA
1 ACATCATTCACATGCTACCATTTATCACATACAA
79123668 ACATCATTCACATGCTACCATTTATCACATACAA
1 ACATCATTCACATGCTACCATTTATCACATACAA
79123702 ACATCATTCACATGCTACCATTTATCACATACAA
1 ACATCATTCACATGCTACCATTTATCACATACAA
79123736 ACATCA
1 ACATCA
79123742 CATACTTATC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 74 1.00
ACGTcount: A:0.39, C:0.30, G:0.03, T:0.29
Consensus pattern (34 bp):
ACATCATTCACATGCTACCATTTATCACATACAA
Found at i:79124493 original size:42 final size:42
Alignment explanation
Indices: 79124375--79124493 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 42
79124365 ATTCCATATT
** * *
79124375 CCAGATATGGTCTTACATGTAATCTCGTATTGATGCCAATAGC
1 CCAGATATGGTCTTACACATAGTCTCATATTGATGCCAATA-C
* * *
79124418 CCAGCTATGGTATTACACGA-AGTCTCACATTGATGCCACAT-C
1 CCAGATATGGTCTTACAC-ATAGTCTCATATTGATGCCA-ATAC
*
79124460 CCAGATATGGTCTTACACATAGTCTCATTTTGAT
1 CCAGATATGGTCTTACACATAGTCTCATATTGAT
79124494 ATGGTCTCAT
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.02
42 29 0.47
43 30 0.48
44 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (42 bp):
CCAGATATGGTCTTACACATAGTCTCATATTGATGCCAATAC
Found at i:79134203 original size:56 final size:56
Alignment explanation
Indices: 79134136--79134248 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
79134126 CTTCAAAGTA
79134136 AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTAGGTCATTTTGAAGTGCTTTTGG
1 AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTAGGTCATTTTGAAGTGCTTTTGG
*
79134192 AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTGGGTCATTTTGAAGTGCTTTTGG
1 AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTAGGTCATTTTGAAGTGCTTTTGG
79134248 A
1 A
79134249 TCATCTAATA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.21, C:0.05, G:0.33, T:0.41
Consensus pattern (56 bp):
AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTAGGTCATTTTGAAGTGCTTTTGG
Found at i:79139899 original size:12 final size:12
Alignment explanation
Indices: 79139877--79139905 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
79139867 ATTTTTAATA
79139877 TTTTA-AATTAT
1 TTTTATAATTAT
79139888 TTTTATAATTAT
1 TTTTATAATTAT
79139900 TTTTAT
1 TTTTAT
79139906 TTTTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTATAATTAT
Found at i:79140350 original size:15 final size:15
Alignment explanation
Indices: 79140330--79140361 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
79140320 GTGGTAAGAA
*
79140330 TTTAATATTTAATTT
1 TTTAATACTTAATTT
79140345 TTTAATACTTAATTT
1 TTTAATACTTAATTT
79140360 TT
1 TT
79140362 AATTTATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTAATACTTAATTT
Found at i:79148404 original size:40 final size:41
Alignment explanation
Indices: 79148265--79148413 Score: 185
Period size: 41 Copynumber: 3.7 Consensus size: 41
79148255 TCGGGGTTTA
* *
79148265 AATCCGAGCTTGGTCTTGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
79148306 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
79148347 AA-CCAAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
79148387 AATCCAAGCTTGGT-TCGAAGGGCTTTT
1 AATCCAAGCTTGGTCTCGAAGGGCTTTT
79148414 TGAGTCAGCG
Statistics
Matches: 92, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
40 42 0.46
41 50 0.54
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:79156382 original size:41 final size:41
Alignment explanation
Indices: 79156325--79156474 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
79156315 TCGGGGTTTA
79156325 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
79156366 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
79156407 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
79156447 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
79156475 TGAGTCAGCG
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:79159951 original size:8 final size:8
Alignment explanation
Indices: 79159934--79159971 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
79159924 AGTCAAGCAT
79159934 AGAA-AAG
1 AGAAGAAG
79159941 AGAAGAAG
1 AGAAGAAG
*
79159949 AGAAGATG
1 AGAAGAAG
79159957 AGAAGAAG
1 AGAAGAAG
79159965 AGAAGAA
1 AGAAGAA
79159972 CGGTATCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 4 0.14
8 24 0.86
ACGTcount: A:0.63, C:0.00, G:0.34, T:0.03
Consensus pattern (8 bp):
AGAAGAAG
Found at i:79162903 original size:62 final size:62
Alignment explanation
Indices: 79162801--79162925 Score: 241
Period size: 62 Copynumber: 2.0 Consensus size: 62
79162791 TATGATACGC
*
79162801 AAATTGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTGAATAAGTATAAAATGGTT
1 AAATGGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTGAATAAGTATAAAATGGTT
79162863 AAATGGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTGAATAAGTATAAAATGGTT
1 AAATGGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTGAATAAGTATAAAATGGTT
79162925 A
1 A
79162926 GGTTATTATA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.46, C:0.06, G:0.18, T:0.30
Consensus pattern (62 bp):
AAATGGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTGAATAAGTATAAAATGGTT
Found at i:79169323 original size:40 final size:40
Alignment explanation
Indices: 79169268--79169367 Score: 141
Period size: 40 Copynumber: 2.5 Consensus size: 40
79169258 GGATATAACG
*
79169268 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
79169308 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
79169348 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
79169368 ATCTTAGTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 48 0.89
41 6 0.11
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:79169404 original size:80 final size:80
Alignment explanation
Indices: 79169268--79169419 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
79169258 GGATATAACG
* * * *
79169268 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACAAAGCCCGGATATAGTAACTAGCACGAAAGCCTTCGGGACTT
79169333 AACCCGGGTTTAGTA
66 AACCCGGGTTTAGTA
** * *
79169348 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC-AAAGCCTTCGGGAC
1 ACTCGCACAAATGCCTTCGGGA-CAAAGCCCGGATATAGTAAC-TAGCACGAAAGCCTTCGGGAC
*
79169411 TTAGCCCGG
64 TTAACCCGG
79169420 ACATCATTCA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
79 3 0.05
80 53 0.87
81 5 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACAAAGCCCGGATATAGTAACTAGCACGAAAGCCTTCGGGACTT
AACCCGGGTTTAGTA
Found at i:79175200 original size:117 final size:116
Alignment explanation
Indices: 79175034--79175263 Score: 451
Period size: 117 Copynumber: 2.0 Consensus size: 116
79175024 TTTCCAAAAT
79175034 TGCCAACATACAGCTTATATCATCATTCAGTCCATCTTCGAAGCGTTTACACATCACAGCTTCTG
1 TGCCAACATACAGCTTATATCATCATTCAGTCCATCTTCGAAGCGTTTACACATCACAGCTTCTG
79175099 AAGAAATGCATTCTCGCGCGTACCGGCTAAGCCTCACAAATTTTCGTTATA
66 AAGAAATGCATTCTCGCGCGTACCGGCTAAGCCTCACAAATTTTCGTTATA
79175150 TGCCAACATACAGCTTTATATCATCATTCAGTCCATCTTCGAAGCGTTTACACATCACAGCTTCT
1 TGCCAACATACAGC-TTATATCATCATTCAGTCCATCTTCGAAGCGTTTACACATCACAGCTTCT
79175215 GAAGAAATGCATTCTCGCGCGTACCGGCTAAGCCTCACAAATTTTCGTT
65 GAAGAAATGCATTCTCGCGCGTACCGGCTAAGCCTCACAAATTTTCGTT
79175264 CATAGTCGGT
Statistics
Matches: 113, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
116 14 0.12
117 99 0.88
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (116 bp):
TGCCAACATACAGCTTATATCATCATTCAGTCCATCTTCGAAGCGTTTACACATCACAGCTTCTG
AAGAAATGCATTCTCGCGCGTACCGGCTAAGCCTCACAAATTTTCGTTATA
Found at i:79177442 original size:40 final size:40
Alignment explanation
Indices: 79177398--79177497 Score: 141
Period size: 40 Copynumber: 2.5 Consensus size: 40
79177388 GGATATAACG
*
79177398 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
79177438 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
79177478 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
79177498 ATCTTAGTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 48 0.89
41 6 0.11
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:79177515 original size:80 final size:80
Alignment explanation
Indices: 79177398--79177549 Score: 182
Period size: 80 Copynumber: 1.9 Consensus size: 80
79177388 GGATATAACG
* * * * *
79177398 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTAAC-TCGCACGAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACAAAGCCCGGATATAGTAACTTAGCAC-AAAGCCTTCAGGACT
79177462 TAACCCGGGTTTAGTA
65 TAACCCGGGTTTAGTA
** * *
79177478 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCAGGACT
1 ACTCGCACAAATGCCTTCGGGA-CAAAGCCCGGATATAGTAACTTAGCACAAAGCCTTCAGGACT
*
79177542 TAGCCCGG
65 TAACCCGG
79177550 ACATCATTCA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
79 3 0.05
80 52 0.87
81 5 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACAAAGCCCGGATATAGTAACTTAGCACAAAGCCTTCAGGACTT
AACCCGGGTTTAGTA
Found at i:79181403 original size:43 final size:43
Alignment explanation
Indices: 79181270--79181439 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 43
79181260 ATAAAGCTCG
* * *
79181270 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACAA
* * * * * *
79181311 TATCGATGCCACTATCCCAAACAAGGTCTTATACG-AATTCA-TA
1 TA-CAATGCCAATATCCCAGACATGGTCTTACACGTAA-TCACAA
*
79181354 TAACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
1 T-ACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACAA
* * * * * *
79181398 TACAATGTCAATGTCCCAGAAATGGTCCTCCATGTAATCACA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACA
79181440 TATTGGTAAT
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 88 0.86
44 5 0.05
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACAA
Found at i:79181627 original size:29 final size:29
Alignment explanation
Indices: 79181594--79181651 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
79181584 ATAAATCAAT
*
79181594 TTAAAGGTATTTATTTGCATATGAACTTA
1 TTAAAGGTATTTATTTGCATATCAACTTA
79181623 TTAAAGGTATTTATTTGCATATCAACTTA
1 TTAAAGGTATTTATTTGCATATCAACTTA
79181652 CCTCGTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (29 bp):
TTAAAGGTATTTATTTGCATATCAACTTA
Found at i:79186328 original size:6 final size:6
Alignment explanation
Indices: 79186317--79186343 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
79186307 TGAGAAAGTT
79186317 TATGTA TATGTA TATGTA TATGTA TAT
1 TATGTA TATGTA TATGTA TATGTA TAT
79186344 ATATGAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (6 bp):
TATGTA
Found at i:79193451 original size:17 final size:17
Alignment explanation
Indices: 79193431--79193468 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
79193421 GTGGACAATC
79193431 AAAA-TAGTAATCATAGG
1 AAAACTAGTAATCA-AGG
*
79193448 AAAACTCGTAATCAAGG
1 AAAACTAGTAATCAAGG
79193465 AAAA
1 AAAA
79193469 AGGGTTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.55, C:0.11, G:0.16, T:0.18
Consensus pattern (17 bp):
AAAACTAGTAATCAAGG
Found at i:79194794 original size:125 final size:125
Alignment explanation
Indices: 79194572--79194823 Score: 407
Period size: 125 Copynumber: 2.0 Consensus size: 125
79194562 TCATTCAAAT
* **
79194572 TTACAAATGATTGACTTGTGAATGCAAGGTTCGTAGAACAAGGAACTCGAGTTTGGACTGAGCCA
1 TTACAAACGATTGACTTGTGAATGCAAGGTTCGTAGAACAAGGAACTCGAGTGAGGACTGAGCCA
* *
79194637 GATCATGTCAAGAAAAGGTGAAAATTAAGGAAAGTGACATGCACATAGGTCAGGGGTCAC
66 GATCATGTCAAGAAAAGGAGAAAATTAAGGAAAGAGACATGCACATAGGTCAGGGGTCAC
* *
79194697 TTACAAACGATTGACTTGTGAATGCAGGGTTCGTAGAACAAGGAATTCGAGTGAGGA-TCGAGCC
1 TTACAAACGATTGACTTGTGAATGCAAGGTTCGTAGAACAAGGAACTCGAGTGAGGACT-GAGCC
* *
79194761 ATATCATGTCGAGAAAAGGAGAAAATTAAGGAAAGAGACATGCACATAGGTCAGGGGTCAC
65 AGATCATGTCAAGAAAAGGAGAAAATTAAGGAAAGAGACATGCACATAGGTCAGGGGTCAC
79194822 TT
1 TT
79194824 CTAGGGACTT
Statistics
Matches: 117, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
124 1 0.01
125 116 0.99
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (125 bp):
TTACAAACGATTGACTTGTGAATGCAAGGTTCGTAGAACAAGGAACTCGAGTGAGGACTGAGCCA
GATCATGTCAAGAAAAGGAGAAAATTAAGGAAAGAGACATGCACATAGGTCAGGGGTCAC
Found at i:79196866 original size:28 final size:29
Alignment explanation
Indices: 79196768--79196866 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
79196758 TCATAAATTG
* *
79196768 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
79196797 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
79196825 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
79196853 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79196867 GGCTTATTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:79199566 original size:322 final size:322
Alignment explanation
Indices: 79198964--79199596 Score: 1081
Period size: 322 Copynumber: 2.0 Consensus size: 322
79198954 TGTTCTATTT
*
79198964 TCTTTTCTTTTTCCACTTGATTTCTTATATATATACATAATTAGTGATTTTTAATTAAGGTTTAA
1 TCTTTTC-TTTTCCACTTGATTTCTTATATATATACATAATTAGTAATTTTTAATTAAGGTTTAA
*
79199029 TTATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCCACTATCTCATGACA
65 CTATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCCACTATCTCATGACA
* * * * *
79199094 AATAATGGTTAATTAACTATTTTAGTCCTTTAGATAATTGCTTTCTAAGTCTTCAGGTATTTTTT
130 AAAAATGGTTAATTAACCATTTTAGTCCTTTAGATAATTGCTTTCTAAGTCCTCAAGCA-TTTTT
* * *
79199159 TTAAATTAAAATTTAATAGCGATTGGACTTTTACAATTTAGTCTATAAGCTTTAATTAGCTTTTT
194 TCAAATTAAAATTTAATAGCGATTGGACTTTTACAATTTAGTCCATAAGCTTTAAATAGCTTTTT
79199224 CTTGGTTAAATTACTAACCAAATTTCAATATATTTTCATAACAACTTCATTGAAGATGATGTTC
259 CTTGGTTAAATTACTAACCAAATTTCAATATATTTTCATAACAACTTCATTGAAGATGATGTTC
*
79199288 TCTTTTC-TTTCCACTTGATTTCTTATATATATACATCATTAGTAATTTTTAATTAAGGTTTAAC
1 TCTTTTCTTTTCCACTTGATTTCTTATATATATACATAATTAGTAATTTTTAATTAAGGTTTAAC
*
79199352 TATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCTACTATCTCATGACAA
66 TATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCCACTATCTCATGACAA
*
79199417 AAAATGGTTAATTAACCATTTTAGTCCTTTGGATAATTGCTTTCTAAGTCCTCAAGCA-TTTTTC
131 AAAATGGTTAATTAACCATTTTAGTCCTTTAGATAATTGCTTTCTAAGTCCTCAAGCATTTTTTC
* *
79199481 AAATTAAAATTTAATAGCGATTGGACTTTTATAATTTAGTCCATGAGCTTTAAATAGCTATTTTC
196 AAATTAAAATTTAATAGCGATTGGACTTTTACAATTTAGTCCATAAGCTTTAAATAGCT-TTTTC
79199546 TTGGTTAAATTACTTAACCAAATTTCAATATATTTTCATAACAACTTCATT
260 TTGGTTAAATTAC-TAACCAAATTTCAATATATTTTCATAACAACTTCATT
79199597 AATCTTTATA
Statistics
Matches: 292, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
320 60 0.21
321 18 0.06
322 207 0.71
324 7 0.02
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (322 bp):
TCTTTTCTTTTCCACTTGATTTCTTATATATATACATAATTAGTAATTTTTAATTAAGGTTTAAC
TATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCCACTATCTCATGACAA
AAAATGGTTAATTAACCATTTTAGTCCTTTAGATAATTGCTTTCTAAGTCCTCAAGCATTTTTTC
AAATTAAAATTTAATAGCGATTGGACTTTTACAATTTAGTCCATAAGCTTTAAATAGCTTTTTCT
TGGTTAAATTACTAACCAAATTTCAATATATTTTCATAACAACTTCATTGAAGATGATGTTC
Found at i:79201301 original size:21 final size:21
Alignment explanation
Indices: 79201271--79201329 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
79201261 ATTTGAAATG
79201271 TTTTATAATATATATTTTTTAA
1 TTTTA-AATATATATTTTTTAA
79201293 TTTTAAATAT-TATTTTTTAA
1 TTTTAAATATATATTTTTTAA
* *
79201313 ATATAAA-ATATATTTTT
1 TTTTAAATATATATTTTT
79201330 AATAATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.06
20 22 0.65
21 5 0.15
22 5 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTAAATATATATTTTTTAA
Found at i:79201340 original size:21 final size:21
Alignment explanation
Indices: 79201251--79201341 Score: 71
Period size: 21 Copynumber: 4.3 Consensus size: 21
79201241 TATTATTGAT
** **
79201251 TTTAAAATATATTTGAAATGT
1 TTTAAAATATATTTTTAATAA
79201272 TTTATAATATATATTTTT--TAA
1 TTTA-AA-ATATATTTTTAATAA
* *
79201293 TTTTAAATATTATTTTTTA-AA
1 TTTAAAATA-TATTTTTAATAA
*
79201314 TATAAAATATATTTTTAATAA
1 TTTAAAATATATTTTTAATAA
79201335 TTTAAAA
1 TTTAAAA
79201342 CATCTAAATC
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
19 3 0.05
20 17 0.31
21 25 0.45
22 2 0.04
23 8 0.15
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
TTTAAAATATATTTTTAATAA
Found at i:79201553 original size:22 final size:22
Alignment explanation
Indices: 79201500--79201563 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
79201490 CGGATTTTTG
* *
79201500 AAAATTATATTTAATATTTAAA
1 AAAATAATATTTAAAATTTAAA
79201522 AAAATAATATTTAAAATTTTAAA
1 AAAATAATATTTAAAA-TTTAAA
*
79201545 AAAACATATATTATAAAAT
1 AAAATA-ATATT-TAAAAT
79201564 ATTTCAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 14 0.39
23 11 0.31
24 6 0.17
25 5 0.14
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATAATATTTAAAATTTAAA
Found at i:79201555 original size:24 final size:25
Alignment explanation
Indices: 79201505--79201563 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 25
79201495 TTTTGAAAAT
*
79201505 TATATTTAATA-TTTAAAAAAATA-
1 TATATTTAAAATTTTAAAAAAATAA
*
79201528 -ATATTTAAAATTTTAAAAAAA-CA
1 TATATTTAAAATTTTAAAAAAATAA
79201551 TATATTATAAAAT
1 TATATT-TAAAAT
79201564 ATTTCAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
22 9 0.30
23 10 0.33
24 5 0.17
25 6 0.20
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (25 bp):
TATATTTAAAATTTTAAAAAAATAA
Found at i:79204003 original size:19 final size:18
Alignment explanation
Indices: 79203981--79204020 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
79203971 TGAATAAAAC
79203981 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
79204000 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
79204018 TTA
1 TTA
79204021 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:79208683 original size:19 final size:18
Alignment explanation
Indices: 79208659--79208702 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
79208649 AATATGAATA
79208659 AAATTTATCTATCC-AAAT
1 AAATTTATCTA-CCTAAAT
79208677 AAGATTTATCTACCTAAAT
1 AA-ATTTATCTACCTAAAT
79208696 AAATTTA
1 AAATTTA
79208703 AAATATATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (18 bp):
AAATTTATCTACCTAAAT
Found at i:79231475 original size:23 final size:23
Alignment explanation
Indices: 79231449--79231493 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
79231439 ATTTTAACCT
79231449 ATTATAAAAATATAAAGATTTTA
1 ATTATAAAAATATAAAGATTTTA
* * *
79231472 ATTATATAAATATGAATATTTT
1 ATTATAAAAATATAAAGATTTT
79231494 TTTAAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (23 bp):
ATTATAAAAATATAAAGATTTTA
Found at i:79232522 original size:17 final size:17
Alignment explanation
Indices: 79232497--79232531 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
79232487 ATTGATATAC
*
79232497 AGTTGTATCTTTTGAAT
1 AGTTATATCTTTTGAAT
79232514 AGTTATATCTTTTGAAT
1 AGTTATATCTTTTGAAT
79232531 A
1 A
79232532 AATGTATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (17 bp):
AGTTATATCTTTTGAAT
Found at i:79232539 original size:17 final size:17
Alignment explanation
Indices: 79232500--79232540 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
79232490 GATATACAGT
**
79232500 TGTATCTTTTGAATAGT
1 TGTATCTTTTGAATAAA
*
79232517 TATATCTTTTGAATAAA
1 TGTATCTTTTGAATAAA
79232534 TGTATCT
1 TGTATCT
79232541 CTTGGTTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.51
Consensus pattern (17 bp):
TGTATCTTTTGAATAAA
Found at i:79235969 original size:3 final size:3
Alignment explanation
Indices: 79235963--79236171 Score: 125
Period size: 3 Copynumber: 68.3 Consensus size: 3
79235953 ACACTACTAT
*
79235963 ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
79236011 ATA ATA ATA ATA AT- ATA GA-A ATA CA-A AGA GCA-A ATA AAA ATA TTA
1 ATA ATA ATA ATA ATA ATA -ATA ATA -ATA ATA --ATA ATA ATA ATA ATA
* * *
79236056 A-A TTTA A-A A-A ACA ATA CT- ATA TATA A-A AGTA TATA TATA CAT-
1 ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA A-TA -ATA -ATA -ATA
* *
79236098 ATA TGTA CATA AAA AT- ATA CACTA ATA TATA ATA ATA ATA ATA ATA
1 ATA -ATA -ATA ATA ATA ATA -A-TA ATA -ATA ATA ATA ATA ATA ATA
79236144 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
79236172 ATGCAGAAAG
Statistics
Matches: 167, Mismatches: 17, Indels: 44
0.73 0.07 0.19
Matches are distributed among these distances:
2 17 0.10
3 121 0.72
4 25 0.15
5 4 0.02
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:79236962 original size:2 final size:2
Alignment explanation
Indices: 79236957--79237008 Score: 52
Period size: 2 Copynumber: 26.5 Consensus size: 2
79236947 ATTCTTTTTT
* * * *
79236957 TA TA TA TA TA TT TT TA GA TC TA -A TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
79236998 TA TA TA AA TA T
1 TA TA TA TA TA T
79237009 TGTTTTCAGC
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:79238758 original size:39 final size:39
Alignment explanation
Indices: 79238623--79238780 Score: 190
Period size: 39 Copynumber: 4.1 Consensus size: 39
79238613 CTTAAAGACC
* * *
79238623 CCGCAGGCTTCGTGCTGGAATTGTATTCGGACTTAAGGT
1 CCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAGGT
* * * * *
79238662 CCGTAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGAT
1 CCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAGGT
* *
79238701 CTGCAGGCTTCGTGCTGGTACTATATCCGGACTTAAGGT
1 CCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAGGT
* * * *
79238740 CCGCAGGCTTCGTACTGGTACTATATCCGGGCTTAAAGT
1 CCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAGGT
79238779 CC
1 CC
79238781 CGTAAGCTTT
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (39 bp):
CCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAGGT
Found at i:79241474 original size:47 final size:46
Alignment explanation
Indices: 79241362--79241624 Score: 186
Period size: 46 Copynumber: 5.7 Consensus size: 46
79241352 ATTCGTGTGT
*
79241362 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATT-A-TGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATC-G--ACATTGAGAGA
* *
79241408 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGACATTGAGA-GA
* * * *
79241456 GGGCTAGTGTAAGA-CATGTTTGGGACATGCAACGGC-TTCGAGACGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACATT-GAGA-G-A
* * * * *
79241503 AAAC-AGTGTAAGA-TATGTCTGGGACATGCATCGGCTACT-AGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGAC-ATTGAGA-GA
* *
79241548 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATA
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGACATTGAGAGA
* * *
79241594 TGAGCCAGTATAAGACCATGTCTAGGACATG
1 -GAGCTAGTGTAAGACCATGTCTGGGACATG
79241625 GCATTAGCAC
Statistics
Matches: 174, Mismatches: 27, Indels: 32
0.75 0.12 0.14
Matches are distributed among these distances:
45 9 0.05
46 70 0.40
47 68 0.39
48 27 0.16
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACATTGAGAGA
Found at i:79241622 original size:140 final size:140
Alignment explanation
Indices: 79241367--79241624 Score: 360
Period size: 140 Copynumber: 1.8 Consensus size: 140
79241357 TGTGTGAGCT
*
79241367 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
* * * * *
79241432 GACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGACATGTTTGGGACATGCAACGGCTTCGA
66 GACATGGCATCGACATTGAGACGAGAGCCAGTATAAGACATGTCTAGGACATGCAACGGCTTCGA
79241497 GACGTAAAAC
131 GACGTAAAAC
* * * * *
79241507 AGTGTAAGATATGTCTGGGACATGCATCGGCTAC-TAGATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-GATGAGAGCCAGTGTAAGACCATGTCTA
*
79241571 GGACATGGCATCGAC-TTGAGA-TATGAGCCAGTATAAGACCATGTCTAGGACATG
65 GGACATGGCATCGACATTGAGACGA-GAGCCAGTATAAGA-CATGTCTAGGACATG
79241625 GCATTAGCAC
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 84 0.82
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
GACATGGCATCGACATTGAGACGAGAGCCAGTATAAGACATGTCTAGGACATGCAACGGCTTCGA
GACGTAAAAC
Found at i:79241625 original size:47 final size:47
Alignment explanation
Indices: 79241361--79241628 Score: 189
Period size: 47 Copynumber: 5.7 Consensus size: 47
79241351 CATTCGTGTG
* * * *
79241361 TGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--CACATTA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGA-TA
* *
79241405 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGA
1 T--GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGA-TA
* * * * * **
79241456 -GGGCTAGTGTAAGA-CATGTTTGGGACAT-GCAACGGCTTCGAGACG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTT-GAGATA
* ** * *
79241501 TAAAACAGTGTAAGA-TATGTCTGGGACAT-GCATCGGCTACT-AGATGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT--TGAGAT-A
*
79241548 T-AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATA
* *
79241594 TGAGCCAGTATAAGACCATGTCTAGGACATGGCAT
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
79241629 TAGCACCTTA
Statistics
Matches: 176, Mismatches: 32, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 69 0.39
47 73 0.41
48 28 0.16
51 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATA
Found at i:79250973 original size:31 final size:31
Alignment explanation
Indices: 79250930--79250992 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
79250920 AAAGTACAAC
79250930 AAAACATTAATTACAATAAAGAGTAAAAAGG
1 AAAACATTAATTACAATAAAGAGTAAAAAGG
* * *
79250961 AAAATATTAATTACAGTAAAGATTAAAAAGG
1 AAAACATTAATTACAATAAAGAGTAAAAAGG
79250992 A
1 A
79250993 TGGTTTAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.60, C:0.05, G:0.13, T:0.22
Consensus pattern (31 bp):
AAAACATTAATTACAATAAAGAGTAAAAAGG
Found at i:79251165 original size:36 final size:36
Alignment explanation
Indices: 79251115--79251188 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
79251105 CATTAACTTT
79251115 AACTTTCAGCATTTTTATATTGAAAAAAATCAAATC
1 AACTTTCAGCATTTTTATATTGAAAAAAATCAAATC
* *
79251151 AACTTTCAGTATTTTTATATTGAAAAAATTCAAATC
1 AACTTTCAGCATTTTTATATTGAAAAAAATCAAATC
79251187 AA
1 AA
79251189 AACATATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (36 bp):
AACTTTCAGCATTTTTATATTGAAAAAAATCAAATC
Found at i:79252094 original size:51 final size:51
Alignment explanation
Indices: 79252039--79252174 Score: 191
Period size: 51 Copynumber: 2.7 Consensus size: 51
79252029 TGGAAACATG
*
79252039 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* * ** * *
79252090 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* *
79252141 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGAT
79252175 TTGATTGTAG
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.43
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
Found at i:79252144 original size:19 final size:19
Alignment explanation
Indices: 79252071--79252148 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
79252061 AATCTTAGAG
*
79252071 ATCTTAGATATGATATGTA
1 ATCTTAGATAAGATATGTA
79252090 ATCTT--ATAAGATAT-T-
1 ATCTTAGATAAGATATGTA
* **
79252105 AT-TT-TATAAGAT-TACA
1 ATCTTAGATAAGATATGTA
79252121 TATCTTAGATAAGATATGTA
1 -ATCTTAGATAAGATATGTA
79252141 ATCTTAGA
1 ATCTTAGA
79252149 AGATATGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
14 3 0.06
15 9 0.19
16 1 0.02
17 10 0.21
18 2 0.04
19 20 0.43
20 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (19 bp):
ATCTTAGATAAGATATGTA
Found at i:79257297 original size:51 final size:51
Alignment explanation
Indices: 79257242--79257377 Score: 191
Period size: 51 Copynumber: 2.7 Consensus size: 51
79257232 TGGAAACATT
*
79257242 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* * ** * *
79257293 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* *
79257344 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGAT
79257378 TTGATTGTAG
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.43
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
Found at i:79257347 original size:19 final size:19
Alignment explanation
Indices: 79257274--79257351 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
79257264 AATCTTAGAG
*
79257274 ATCTTAGATATGATATGTA
1 ATCTTAGATAAGATATGTA
79257293 ATCTT--ATAAGATAT-T-
1 ATCTTAGATAAGATATGTA
* **
79257308 AT-TT-TATAAGAT-TACA
1 ATCTTAGATAAGATATGTA
79257324 TATCTTAGATAAGATATGTA
1 -ATCTTAGATAAGATATGTA
79257344 ATCTTAGA
1 ATCTTAGA
79257352 AGATATGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
14 3 0.06
15 9 0.19
16 1 0.02
17 10 0.21
18 2 0.04
19 20 0.43
20 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (19 bp):
ATCTTAGATAAGATATGTA
Found at i:79261101 original size:30 final size:30
Alignment explanation
Indices: 79261065--79261129 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
79261055 ACGGGCCTAA
*
79261065 TAAAGGTTGTGTCATCAAGCTTGACATGAG
1 TAAAGGTTGTGTCATCAAACTTGACATGAG
79261095 TAAAGGTTGTGTCATCAAACTTGACATGAG
1 TAAAGGTTGTGTCATCAAACTTGACATGAG
79261125 TAAAG
1 TAAAG
79261130 CATACGACCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (30 bp):
TAAAGGTTGTGTCATCAAACTTGACATGAG
Found at i:79265419 original size:11 final size:11
Alignment explanation
Indices: 79265403--79265546 Score: 58
Period size: 9 Copynumber: 14.5 Consensus size: 11
79265393 AAAATTAATT
79265403 AAAATATTATA
1 AAAATATTATA
79265414 AAAATA-TATTGA
1 AAAATATTA-T-A
79265426 AAAAT-TTATA
1 AAAATATTATA
*
79265436 AAATTA-T-TA
1 AAAATATTATA
* *
79265445 GATAT-TTATA
1 AAAATATTATA
79265455 AAAA-A-TATA
1 AAAATATTATA
79265464 AAAATATT-T-
1 AAAATATTATA
*
79265473 -AAATTTTATTA
1 AAAATATTA-TA
79265484 AAAAT-TTA-A
1 AAAATATTATA
79265493 AAAATA-T-T-
1 AAAATATTATA
79265501 AAAA-ATT-TA
1 AAAATATTATA
79265510 AAAATA-TATA
1 AAAATATTATA
*
79265520 GAAAT-TTATTA
1 AAAATATTA-TA
79265531 AAAACTA-TATA
1 AAAA-TATTATA
79265542 AAAAT
1 AAAAT
79265547 CGTTACAAAA
Statistics
Matches: 101, Mismatches: 9, Indels: 47
0.64 0.06 0.30
Matches are distributed among these distances:
7 1 0.01
8 12 0.12
9 25 0.25
10 25 0.25
11 23 0.23
12 15 0.15
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.38
Consensus pattern (11 bp):
AAAATATTATA
Found at i:79265457 original size:29 final size:29
Alignment explanation
Indices: 79265420--79265503 Score: 93
Period size: 29 Copynumber: 2.9 Consensus size: 29
79265410 TATAAAAATA
* *
79265420 TATTGAAAAATTTATAAAATTATTAGATATT
1 TATT-AAAAATTTATAAAAATATTAAAT-TT
*
79265451 TA-TAAAAA-ATATAAAAATATTTAAATTT
1 TATTAAAAATTTATAAAAATA-TTAAATTT
79265479 TATTAAAAATTTA-AAAAATATTAAA
1 TATTAAAAATTTATAAAAATATTAAA
79265504 AATTTAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
28 18 0.39
29 23 0.50
30 3 0.07
31 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (29 bp):
TATTAAAAATTTATAAAAATATTAAATTT
Found at i:79265466 original size:28 final size:28
Alignment explanation
Indices: 79265432--79265524 Score: 91
Period size: 28 Copynumber: 3.3 Consensus size: 28
79265422 TTGAAAAATT
* *
79265432 TATAAAATTATTAGATATTTATAAAAAA
1 TATAAAAATATTAAATATTTATAAAAAA
*
79265460 TATAAAAATATTTAAAT-TTTATTAAAAA
1 TATAAAAATA-TTAAATATTTATAAAAAA
* * *
79265488 TTTAAAAAATATTAAAAATTTA-AAAATA
1 TAT-AAAAATATTAAATATTTATAAAAAA
*
79265516 TATAGAAAT
1 TATAAAAAT
79265525 TTATTAAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
27 5 0.09
28 32 0.60
29 16 0.30
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (28 bp):
TATAAAAATATTAAATATTTATAAAAAA
Found at i:79265492 original size:18 final size:18
Alignment explanation
Indices: 79265400--79265546 Score: 98
Period size: 18 Copynumber: 7.5 Consensus size: 18
79265390 AATAAAATTA
79265400 ATTAAAATATTATAAAAATAT
1 ATTAAAA-ATT-TAAAAA-AT
*
79265421 ATTGAAAAATTTATAAAATT
1 ATT-AAAAATTTA-AAAAAT
* *
79265441 ATTAGATATTTATAAAAAAT
1 ATTA-AAAATT-TAAAAAAT
* ***
79265461 ATAAAAATATTTAAATTTT
1 ATTAAAA-ATTTAAAAAAT
79265480 ATTAAAAATTTAAAAAAT
1 ATTAAAAATTTAAAAAAT
79265498 ATTAAAAATTT-AAAAAT
1 ATTAAAAATTTAAAAAAT
*
79265515 ATATAGAAATTTATTAAAAACT
1 AT-TAAAAATTTA--AAAAA-T
79265537 ATATAAAAAT
1 AT-TAAAAAT
79265547 CGTTACAAAA
Statistics
Matches: 100, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
17 8 0.08
18 27 0.27
19 14 0.14
20 20 0.20
21 17 0.17
22 14 0.14
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (18 bp):
ATTAAAAATTTAAAAAAT
Found at i:79265509 original size:29 final size:29
Alignment explanation
Indices: 79265403--79265509 Score: 99
Period size: 28 Copynumber: 3.6 Consensus size: 29
79265393 AAAATTAATT
*
79265403 AAAATATTATAAAAATATATTGAAAAATTTATA
1 AAAATA-T-TAAAAATTTATT-AAAAATTTA-A
* * * * *
79265436 AAATTATTAGATATTTATAAAAAATAT-A
1 AAAATATTAAAAATTTATTAAAAATTTAA
* *
79265464 AAAATATTTAAATTTTATTAAAAATTTAA
1 AAAATATTAAAAATTTATTAAAAATTTAA
79265493 AAAATATTAAAAATTTA
1 AAAATATTAAAAATTTA
79265510 AAAATATATA
Statistics
Matches: 58, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
28 21 0.36
29 16 0.28
30 7 0.12
31 8 0.14
32 1 0.02
33 5 0.09
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (29 bp):
AAAATATTAAAAATTTATTAAAAATTTAA
Found at i:79265591 original size:22 final size:23
Alignment explanation
Indices: 79265559--79265601 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
79265549 TTACAAAATA
79265559 TAAAAGATATAGAAAAATTATTT
1 TAAAAGATATAGAAAAATTATTT
79265582 TAAAA-ATATAGAAAAATTAT
1 TAAAAGATATAGAAAAATTAT
79265602 AAAAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (23 bp):
TAAAAGATATAGAAAAATTATTT
Found at i:79265608 original size:22 final size:22
Alignment explanation
Indices: 79265560--79265608 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
79265550 TACAAAATAT
* **
79265560 AAAAGATATAGAAAAATTATTT
1 AAAAAATATAGAAAAATTATAA
*
79265582 TAAAAATATAGAAAAATTATAA
1 AAAAAATATAGAAAAATTATAA
79265604 AAAAA
1 AAAAA
79265609 TAACTTTAGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (22 bp):
AAAAAATATAGAAAAATTATAA
Found at i:79266183 original size:11 final size:11
Alignment explanation
Indices: 79266167--79266191 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79266157 TATAATCTTT
79266167 TTTAAAATAAA
1 TTTAAAATAAA
79266178 TTTAAAATAAA
1 TTTAAAATAAA
79266189 TTT
1 TTT
79266192 CTATATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
TTTAAAATAAA
Found at i:79266359 original size:20 final size:22
Alignment explanation
Indices: 79266318--79266367 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
79266308 AATTTTTTAA
79266318 TTTTATTTAATATTAATATAAAT
1 TTTTATTTAATATT-ATATAAAT
79266341 TTTTATTTAATATTATA-AAAT
1 TTTTATTTAATATTATATAAAT
*
79266362 ATTTAT
1 TTTTAT
79266368 GTATTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 9 0.35
22 3 0.12
23 14 0.54
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTTATTTAATATTATATAAAT
Found at i:79269223 original size:51 final size:50
Alignment explanation
Indices: 79269129--79269236 Score: 123
Period size: 51 Copynumber: 2.2 Consensus size: 50
79269119 TGTTCTGCAT
* * * *
79269129 TTAATAAAGTCATGCATTATGTAACTTTCATGTTAGTTAAGTTTGCATCA
1 TTAATTAAGTCATGCATTAAGTAACTATCATGTTAGTTAAGTTTACATCA
*
79269179 TTAAATTAAGTCATGCATTAAGTAACTCATC-TGTTCA-TTTAGTTTACATC-
1 TT-AATTAAGTCATGCATTAAGTAACT-ATCATGTT-AGTTAAGTTTACATCA
79269229 TTAATTAA
1 TTAATTAA
79269237 ATTAAGCATT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
49 6 0.12
50 4 0.08
51 37 0.74
52 3 0.06
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (50 bp):
TTAATTAAGTCATGCATTAAGTAACTATCATGTTAGTTAAGTTTACATCA
Done.