Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 262 of 335
Found at i:79270577 original size:11 final size:11
Alignment explanation
Indices: 79270561--79270613 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
79270551 TAAGTTCTTG
79270561 AAAAAATTTCA
1 AAAAAATTTCA
*
79270572 AAAAAA-TTGA
1 AAAAAATTTCA
**
79270582 AAAAAATTAGA
1 AAAAAATTTCA
79270593 AAAAAA-TTCAA
1 AAAAAATTTC-A
79270604 AAAAAATTTC
1 AAAAAATTTC
79270614 GAAACAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
10 10 0.29
11 22 0.63
12 3 0.09
ACGTcount: A:0.68, C:0.06, G:0.04, T:0.23
Consensus pattern (11 bp):
AAAAAATTTCA
Found at i:79270608 original size:10 final size:10
Alignment explanation
Indices: 79270561--79270608 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
79270551 TAAGTTCTTG
*
79270561 AAAAAATTTC
1 AAAAAAATTC
*
79270571 AAAAAAATTG
1 AAAAAAATTC
*
79270581 AAAAAAATTAG
1 AAAAAAATT-C
79270592 AAAAAAATTC
1 AAAAAAATTC
79270602 AAAAAAA
1 AAAAAAA
79270609 ATTTCGAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
10 24 0.71
11 10 0.29
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:79271871 original size:18 final size:20
Alignment explanation
Indices: 79271850--79271895 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
79271840 GCATGTGACC
79271850 AAGAAAAGA-AAATTGAA-A
1 AAGAAAAGAGAAATTGAAGA
*
79271868 AAG-AGAGAGAAATTGAAGA
1 AAGAAAAGAGAAATTGAAGA
79271887 AAGAAAAGA
1 AAGAAAAGA
79271896 TAGTGAGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 4 0.17
18 11 0.48
19 4 0.17
20 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (20 bp):
AAGAAAAGAGAAATTGAAGA
Found at i:79273217 original size:27 final size:27
Alignment explanation
Indices: 79273185--79273261 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
79273175 GTGCAAAACA
*
79273185 GTCATTTTAC-CTTACAGGGGTATGTCG
1 GTCATTTTACAC-TACAAGGGTATGTCG
*
79273212 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* * *
79273239 ATAATTTTACACTATAAGGGTAT
1 GTCATTTTACACTACAAGGGTAT
79273262 TTTAATAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 43 0.98
28 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:79273262 original size:27 final size:27
Alignment explanation
Indices: 79273228--79273758 Score: 596
Period size: 27 Copynumber: 19.7 Consensus size: 27
79273218 TTACACTACA
* *
79273228 AGGGTATTTCGATAATTTTACACTAT-A
1 AGGGTATTTCGATAATTTTACA-AATCG
** *
79273255 AGGGTATTTTAATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
79273282 AGGGTGTTTCGGTAAATTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
**
79273309 AGGGTATTTTAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
79273336 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
79273363 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
79273390 AGGATGTTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
79273417 AGGGTGTTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
79273444 AGGGTGTTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * *
79273471 AGAGTGTTTCGGTAATTTCACAAATC-
1 AGGGTATTTCGATAATTTTACAAATCG
*
79273497 AGGGGTATTTTGATAATTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
*
79273525 AGGCTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
79273552 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * * *
79273579 AGGGTGTTTTGGTAATTTCACAAGTCA
1 AGGGTATTTCGATAATTTTACAAATCG
79273606 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
79273633 AGGATATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
79273659 TGGGTATTTC-AGTAATTTTACAAAT-T
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
79273685 AGGGGTATTTCGATAATTTTACAAATTG
1 A-GGGTATTTCGATAATTTTACAAATCG
*
79273713 AGGGTATTTCGATAATTTTACAAA-CA
1 AGGGTATTTCGATAATTTTACAAATCG
*
79273739 AGGGGCATTTCGATAATTTT
1 A-GGGTATTTCGATAATTTT
79273759 TCTTTATTAT
Statistics
Matches: 439, Mismatches: 54, Indels: 22
0.85 0.10 0.04
Matches are distributed among these distances:
26 29 0.07
27 407 0.93
28 3 0.01
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:79276964 original size:27 final size:27
Alignment explanation
Indices: 79276934--79276995 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
79276924 TATGTCAGTC
*
79276934 ATTTTACACTACAAGGGAATTTTGATA
1 ATTTTACACTACAAGGGAATTTCGATA
* *
79276961 ATTTTACACTATAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGAATTTCGATA
79276988 ATTTTACA
1 ATTTTACA
79276996 AATTGAGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGAATTTCGATA
Found at i:79277004 original size:27 final size:27
Alignment explanation
Indices: 79276947--79277365 Score: 385
Period size: 27 Copynumber: 15.7 Consensus size: 27
79276937 TTACACTACA
* * * *
79276947 AGGGAATTTTGATAATTTTACACTAT-A
1 AGGGTATTTCGATAATTTTACA-AATCG
*
79276974 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
79277001 AGGGTGTTTCCG-TAATTTTACAAATTG
1 AGGGTATTT-CGATAATTTTACAAATCG
79277028 AGGGTATTTCTG-TAATTTTACAAATCG
1 AGGGTATTTC-GATAATTTTACAAATCG
* * **
79277055 AGAGT-TTTCGATAATTTTAAAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
79277081 AGGGTGTTTC-AGTAATTTTAAAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
79277108 AGGGTATTTC-AGTAATTTTACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
79277135 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
79277162 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * * *
79277189 AAGGTGTGTCGTTAATTTCATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
79277216 -GGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
** * *
79277242 AGGGTATTTAAATAATTTCAC-AGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
* **
79277268 AGGGTTTTTCGATAATTTTACAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
79277295 AGGGTATTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
79277322 A-GATATTTTGGTAATTTTACAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATC-G
*
79277348 GGGGTATTTCCG-TAATTT
1 AGGGTATTT-CGATAATTT
79277366 CTCTTTATTA
Statistics
Matches: 326, Mismatches: 52, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
25 2 0.01
26 83 0.25
27 237 0.73
28 4 0.01
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:79277079 original size:80 final size:80
Alignment explanation
Indices: 79276974--79277365 Score: 393
Period size: 80 Copynumber: 4.9 Consensus size: 80
79276964 TTACACTATA
*
79276974 AGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTCCGTAATTTTACAAATTGAGGGTATTTCT
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTCCGTAATTTTACAAATCGAGGGTATTTC-
79277039 GTAATTTTACAAATCG
65 GTAATTTTACAAATCG
* * * * *
79277055 AGAGT-TTTCGATAATTTTAAAAATTAAGGGTGTTTCAGTAATTTTAAAAATCGAGGGTATTTCA
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTCCGTAATTTTACAAATCGAGGGTATTTC-
*
79277119 GTAATTTTACAAATCA
65 GTAATTTTACAAATCG
* * * *
79277135 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTT-CGATAATTTTACAAATCGAAGGTGTGTC
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTCCG-TAATTTTACAAATCGAGGGTATTTC
* *
79277199 GTTAATTTCATAAATCG
65 G-TAATTTTACAAATCG
** * *** * * *
79277216 -GGGTATTTCGATAATTTTACAAATCAAGGGTATTTAAATAATTTCAC-AGTCGAGGGTTTTTCG
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTCCGTAATTTTACAAATCGAGGGTATTTCG
**
79277279 ATAATTTTACAAATTA
66 -TAATTTTACAAATCG
* * * ** *
79277295 AGGGTATTTC-AGTAATTTTACAAATCGA-GATATTTTGGTAATTTTACAAA-CTGGGGGTATTT
1 AGGGTATTTCGA-TAATTTTACAAATTGAGGGTGTTTCCGTAATTTTACAAATC-GAGGGTATTT
79277357 CCGTAATTT
64 -CGTAATTT
79277366 CTCTTTATTA
Statistics
Matches: 259, Mismatches: 43, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
79 39 0.15
80 154 0.59
81 66 0.25
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (80 bp):
AGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTCCGTAATTTTACAAATCGAGGGTATTTCG
TAATTTTACAAATCG
Found at i:79277337 original size:53 final size:53
Alignment explanation
Indices: 79276947--79277365 Score: 413
Period size: 53 Copynumber: 7.8 Consensus size: 53
79276937 TTACACTACA
* * * *
79276947 AGGGAATTTTGATAATTTTAC-ACTATAAGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAAT-TAAGGGTATTTCG-TAATTTTACAAATCG
* *
79277001 AGGGTGTTTCCG-TAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAATCG
1 AGGGTATTT-CGATAATTTTACAAATTAAGGGTATTTC-GTAATTTTACAAATCG
* * * *
79277055 AGAGT-TTTCGATAATTTTAAAAATTAAGGGTGTTTCAGTAATTTTAAAAATCG
1 AGGGTATTTCGATAATTTTACAAATTAAGGGTATTTC-GTAATTTTACAAATCG
*
79277108 AGGGTATTTC-AGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATTAAGGGTATTTCG-TAATTTTACAAATCG
* * * * * *
79277162 AGGGTGTTTCGATAATTTTACAAATCGAA-GGTGTGTCGTTAATTTCATAAATCG
1 AGGGTATTTCGATAATTTTACAAAT-TAAGGGTATTTCG-TAATTTTACAAATCG
* ** * *
79277216 -GGGTATTTCGATAATTTTACAAATCAAGGGTATTTAAATAATTTCAC-AGTCG
1 AGGGTATTTCGATAATTTTACAAATTAAGGGTATTT-CGTAATTTTACAAATCG
*
79277268 AGGGTTTTTCGATAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATTAAGGGTATTTC-GTAATTTTACAAATCG
* * * * **
79277322 A-GATATTTTGGTAATTTTACAAACTGGGGGTATTTCCGTAATTT
1 AGGGTATTTCGATAATTTTACAAATTAAGGGTATTT-CGTAATTT
79277366 CTCTTTATTA
Statistics
Matches: 305, Mismatches: 45, Indels: 31
0.80 0.12 0.08
Matches are distributed among these distances:
52 8 0.03
53 157 0.51
54 133 0.44
55 7 0.02
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (53 bp):
AGGGTATTTCGATAATTTTACAAATTAAGGGTATTTCGTAATTTTACAAATCG
Found at i:79280556 original size:27 final size:27
Alignment explanation
Indices: 79280509--79280585 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
79280499 GGGCAAAATA
* * *
79280509 GTCATTTTACCCTATAGGGGTATGTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* *
79280536 GTCATTTTACACTACAAGGGTATTTTG
1 GTCATTTTACACTACAAGGGTATGTCG
* *
79280563 ATAATTTTACACTACAAGGGTAT
1 GTCATTTTACACTACAAGGGTAT
79280586 TTTGATAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:79280586 original size:27 final size:27
Alignment explanation
Indices: 79280539--79280600 Score: 124
Period size: 27 Copynumber: 2.3 Consensus size: 27
79280529 TATGTCGGTC
79280539 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTTGATA
79280566 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTTGATA
79280593 ATTTTACA
1 ATTTTACA
79280601 AATCGAGGGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTTGATA
Found at i:79280609 original size:27 final size:27
Alignment explanation
Indices: 79280552--79281081 Score: 445
Period size: 27 Copynumber: 19.7 Consensus size: 27
79280542 TTACACTACA
* *
79280552 AGGGTATTTTGATAATTTTAC-ACTACA
1 AGGGTATTTTGATAATTTTACAAAT-CG
79280579 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
79280606 AGGGTGTTTCGGTAATTTTACAAATCA
1 AGGGTATTTTGATAATTTTACAAATCG
* * *
79280633 AGGGT-GTTTCAGTAATTTTACAAATCA
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * *
79280660 AGGGCATTTCGATAATTTTACAAATTG
1 AGGGTATTTTGATAATTTTACAAATCG
* * *
79280687 AGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
79280714 AGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * *
79280741 AGGGT-GTTTCAGTAATTTTACAAATTG
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * *
79280768 AGTGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
79280795 AGAGT-GTTTCAGTAATTTCACAAATCG
1 AGGGTATTTTGA-TAATTTTACAAATCG
*
79280822 -GAGGTATTTCGATAATTTTACAAATCG
1 AG-GGTATTTTGATAATTTTACAAATCG
* *
79280849 AGGGTATTTCGATAATTTTATAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
79280876 AGGGTGTTTT-AGTAATTTTACAAATTG
1 AGGGTATTTTGA-TAATTTTACAAATCG
*
79280903 AGGGTGTTTT-AGT-ATTTTCACAAATCG
1 AGGGTATTTTGA-TAATTTT-ACAAATCG
* *
79280930 AGGGTATTTTGGTAATTTTACAAATCA
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
79280957 AGGGTA-TTTCAGTAATTTCAC-AGTTG
1 AGGGTATTTTGA-TAATTTTACAAATCG
*
79280983 AGGGTATTTTGGTAATTTTACAAATC-
1 AGGGTATTTTGATAATTTTACAAATCG
* *
79281009 AGGGGTATTTCGATAATTTTACTAA-CTG
1 A-GGGTATTTTGATAATTTTACAAATC-G
* * * *
79281037 GGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
79281064 GGGGTATTTTGGTAATTT
1 AGGGTATTTTGATAATTT
79281082 CTCTTTATTA
Statistics
Matches: 414, Mismatches: 69, Indels: 40
0.79 0.13 0.08
Matches are distributed among these distances:
26 36 0.09
27 360 0.87
28 18 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGATAATTTTACAAATCG
Found at i:79280635 original size:81 final size:81
Alignment explanation
Indices: 79280579--79281081 Score: 520
Period size: 81 Copynumber: 6.2 Consensus size: 81
79280569 TTACACTACA
* * *
79280579 AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCAAGGGTGTTTCA
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCAAGGGTTTTTCA
*
79280644 GTAATTTTACAAATCA
66 GTAATTTTACAAATCG
* * * * **
79280660 AGGGCATTTCGATAATTTTACAAATTGAGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTT-
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCAAGGGT-TTTTC
*
79280724 GGTAATTTTACAAATCG
65 AGTAATTTTACAAATCG
* * * * * * * *
79280741 AGGGT-GTTTCAGTAATTTTACAAATTGAGTGTGTTTCGATAATTTTACAAATCGAGAGTGTTTC
1 AGGGTATTTTGA-TAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCAAGGGTTTTTC
*
79280805 AGTAATTTCACAAATCG
65 AGTAATTTTACAAATCG
* * *
79280822 -GAGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTATAAATCGAGGGTGTTTT
1 AG-GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCAAGGGT-TTTT
*
79280886 -AGTAATTTTACAAATTG
64 CAGTAATTTTACAAATCG
* * * *
79280903 AGGGTGTTTT-AGT-ATTTTCACAAATCGAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
1 AGGGTATTTTGA-TAATTTT-ACAAATCGAGGGTATTTCGATAATTTTACAAATCAAGGGTTTTT
* * *
79280966 CAGTAATTTCAC-AGTTG
64 CAGTAATTTTACAAATCG
* * ** *
79280983 AGGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTCGATAATTTTACTAA-CTGGGGGTGTTT
1 AGGGTATTTTGATAATTTTACAAATCGA-GGGTATTTCGATAATTTTACAAATC-AAGGGTTTTT
*
79281046 CGGTAATTTTACAAATCG
64 CAGTAATTTTACAAATCG
* *
79281064 GGGGTATTTTGGTAATTT
1 AGGGTATTTTGATAATTT
79281082 CTCTTTATTA
Statistics
Matches: 355, Mismatches: 52, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
79 2 0.01
80 74 0.21
81 269 0.76
82 10 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCAAGGGTTTTTCA
GTAATTTTACAAATCG
Found at i:79282880 original size:40 final size:40
Alignment explanation
Indices: 79282813--79282989 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
79282803 ACCCAAGCAT
* *
79282813 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCATAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
79282852 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
79282892 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
79282932 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
79282972 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
79282990 TTATCATCCG
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 103 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:79282946 original size:80 final size:79
Alignment explanation
Indices: 79282813--79282989 Score: 259
Period size: 80 Copynumber: 2.2 Consensus size: 79
79282803 ACCCAAGCAT
* * *
79282813 CTTCGGGAT-TTAGCCGGATATAACAACTCGCATAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
79282877 AACTCGCACAAATGC
65 AACTCGCACAAATGC
79282892 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
1 CTTCGGGTCTTAG-CCGGATATAA-CAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
*
79282956 CAACTCGCACGAATGC
64 CAACTCGCACAAATGC
*
79282972 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
79282990 TTATCATCCG
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
78 1 0.01
79 11 0.12
80 76 0.85
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCGGATATAACAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:79286056 original size:40 final size:40
Alignment explanation
Indices: 79286011--79286178 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
79286001 CGGAATATAA
79286011 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
79286051 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
79286091 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
79286131 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
79286171 CCGGATAT
1 CCGGATAT
79286179 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79289060 original size:27 final size:28
Alignment explanation
Indices: 79289030--79289129 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
79289020 ATAGTGAGTC
79289030 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
79289057 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
79289085 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
79289116 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79289130 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:79296990 original size:26 final size:28
Alignment explanation
Indices: 79296961--79297029 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
79296951 ATAGTGAGTC
79296961 CGCACACTTAGTGCTATA-AATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
79296987 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
79297015 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79297030 GTACAAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 17 0.44
27 4 0.10
28 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:79301165 original size:49 final size:49
Alignment explanation
Indices: 79301109--79301274 Score: 314
Period size: 49 Copynumber: 3.4 Consensus size: 49
79301099 TATCAAAATT
79301109 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
79301158 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
79301207 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
79301256 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
79301275 ATATATATAT
Statistics
Matches: 114, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 114 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:79301273 original size:2 final size:2
Alignment explanation
Indices: 79301266--79301290 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79301256 TGTGAAAGTG
79301266 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
79301291 GTGGTAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:79301412 original size:37 final size:36
Alignment explanation
Indices: 79301357--79301443 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
79301347 AACTTGGAAA
*
79301357 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACCACGTGTGGAGAT
79301395 TATGTCCGGGTACGACCCGATGACCACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACCACGTGTGGAGAT
*
79301432 TATGTTCGGGTA
1 TATGTCCGGGTA
79301444 AGACTTCGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACCACGTGTGGAGAT
Found at i:79306520 original size:28 final size:29
Alignment explanation
Indices: 79306422--79306520 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
79306412 TCACAAATTG
* *
79306422 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
79306451 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
79306479 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
79306507 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79306521 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:79312333 original size:40 final size:40
Alignment explanation
Indices: 79312278--79312441 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
79312268 TGAATGATAC
* * *
79312278 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
**
79312318 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGGGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
79312358 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
79312398 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
79312438 CCGG
1 CCGG
79312442 TTAAATCCCG
Statistics
Matches: 101, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:79312411 original size:80 final size:80
Alignment explanation
Indices: 79312278--79312441 Score: 204
Period size: 80 Copynumber: 2.0 Consensus size: 80
79312268 TGAATGATAC
* * * ** *
79312278 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
79312342 GTGCGGGTTGTTATAT
65 GTGCGGGTGGTTATAT
* * *
79312358 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
**
79312423 TGCTTGTGGTTATAT
66 TGCGGGTGGTTATAT
79312438 CCGG
1 CCGG
79312442 TTAAATCCCG
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 68 0.96
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGGGTGGTTATAT
Found at i:79317816 original size:62 final size:63
Alignment explanation
Indices: 79317719--79317844 Score: 245
Period size: 62 Copynumber: 2.0 Consensus size: 63
79317709 GTCAGTATAC
79317719 TATGTGGGGAACCAACTTCAAAATAGGAGTGGAAAAGGA-CCCAGTCCAACTTCTATAATCCT
1 TATGTGGGGAACCAACTTCAAAATAGGAGTGGAAAAGGACCCCAGTCCAACTTCTATAATCCT
79317781 TATGTGGGGAACCAACTTCAAAATAGGAGTGGAAAAGGACCCCAGTCCAACTTCTATAATCCT
1 TATGTGGGGAACCAACTTCAAAATAGGAGTGGAAAAGGACCCCAGTCCAACTTCTATAATCCT
79317844 T
1 T
79317845 CATGGCGTAA
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
62 39 0.62
63 24 0.38
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (63 bp):
TATGTGGGGAACCAACTTCAAAATAGGAGTGGAAAAGGACCCCAGTCCAACTTCTATAATCCT
Found at i:79321617 original size:28 final size:28
Alignment explanation
Indices: 79321548--79321648 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
79321538 GACAAGATTG
* * * *
79321548 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
79321578 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79321606 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
79321635 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79321649 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79321642 original size:29 final size:28
Alignment explanation
Indices: 79321577--79321648 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
79321567 AAAATTGTAC
*
79321577 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
79321605 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
79321634 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79321649 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:79329429 original size:28 final size:28
Alignment explanation
Indices: 79329360--79329460 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
79329350 GACAAGATTG
* * * *
79329360 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
79329390 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79329418 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
79329447 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79329461 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79329454 original size:29 final size:28
Alignment explanation
Indices: 79329389--79329460 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
79329379 AAAATTGTAC
*
79329389 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
79329417 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
79329446 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79329461 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:79334545 original size:43 final size:42
Alignment explanation
Indices: 79334423--79334545 Score: 106
Period size: 43 Copynumber: 2.9 Consensus size: 42
79334413 ACTGAGACTT
* * * ** *
79334423 TGGCATCGAT-TTATGATTTACGTGTAAGACCATGTTTGGGACAT
1 TGGCATC-ATATT-TGA-TTACATGTAAGACCACGTCTGCAACAG
* * *
79334467 TGGCATCGTATTTGATTTCATGTAAGA-AACTGTCTGCAACAG
1 TGGCATCATATTTGATTACATGTAAGACCAC-GTCTGCAACAG
79334509 TGGCATCAATATTTGATTACATGTAAGACCACGTCTG
1 TGGCATC-ATATTTGATTACATGTAAGACCACGTCTG
79334546 GAATGTTGGC
Statistics
Matches: 63, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.02
42 24 0.38
43 27 0.43
44 11 0.17
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (42 bp):
TGGCATCATATTTGATTACATGTAAGACCACGTCTGCAACAG
Found at i:79337085 original size:33 final size:33
Alignment explanation
Indices: 79337043--79337108 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
79337033 AATAATTTTG
79337043 TTGAATCAATGACGTTTTTCACATATCCTTAAT
1 TTGAATCAATGACGTTTTTCACATATCCTTAAT
79337076 TTGAATCAATGACGTTTTTCACATATCCTTAAT
1 TTGAATCAATGACGTTTTTCACATATCCTTAAT
79337109 CTAGATAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.42
Consensus pattern (33 bp):
TTGAATCAATGACGTTTTTCACATATCCTTAAT
Found at i:79337511 original size:135 final size:135
Alignment explanation
Indices: 79337269--79337538 Score: 522
Period size: 135 Copynumber: 2.0 Consensus size: 135
79337259 GCTTCATCTT
79337269 GAACTATAATATCAATAAACGCATCACTTAACTCTCACATATATATACTTTCGTACAATAGTGAT
1 GAACTATAATATCAATAAACGCATCACTTAACTCTCACATATATATACTTTCGTACAATAGTGAT
*
79337334 CTAGATGGTCGAATATTTCCAAAGCACATTCTTCATCAATTGAAGATGGATTCACATGGTAAGCA
66 CTAGATGGTCGAATATTTCCAAAGCACATTCTTCATCAATTGAAGATAGATTCACATGGTAAGCA
79337399 CATTC
131 CATTC
*
79337404 GAACTATAATATCAATAAACGTATCACTTAACTCTCACATATATATACTTTCGTACAATAGTGAT
1 GAACTATAATATCAATAAACGCATCACTTAACTCTCACATATATATACTTTCGTACAATAGTGAT
79337469 CTAGATGGTCGAATATTTCCAAAGCACATTCTTCATCAATTGAAGATAGATTCACATGGTAAGCA
66 CTAGATGGTCGAATATTTCCAAAGCACATTCTTCATCAATTGAAGATAGATTCACATGGTAAGCA
79337534 CATTC
131 CATTC
79337539 TTCACCAATT
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 133 1.00
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (135 bp):
GAACTATAATATCAATAAACGCATCACTTAACTCTCACATATATATACTTTCGTACAATAGTGAT
CTAGATGGTCGAATATTTCCAAAGCACATTCTTCATCAATTGAAGATAGATTCACATGGTAAGCA
CATTC
Found at i:79338151 original size:47 final size:47
Alignment explanation
Indices: 79338097--79338438 Score: 549
Period size: 47 Copynumber: 7.3 Consensus size: 47
79338087 GCCTGCGGGA
* * *
79338097 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
79338144 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
79338191 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
79338238 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
79338285 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
79338332 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
79338379 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
79338426 CTTGTCACATATA
1 CTTATCACATATA
79338439 CATATCTTGT
Statistics
Matches: 273, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 273 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:79344860 original size:37 final size:37
Alignment explanation
Indices: 79344809--79344900 Score: 157
Period size: 37 Copynumber: 2.5 Consensus size: 37
79344799 CTTATTACGA
79344809 AGTCTTACCCGGACATAATCTCCACACGTAGTCATCG
1 AGTCTTACCCGGACATAATCTCCACACGTAGTCATCG
*
79344846 GGTCTTACCCGGACATAATCTCCACACGTAGTCATCG
1 AGTCTTACCCGGACATAATCTCCACACGTAGTCATCG
*
79344883 AGTCTCACCCGGAACATA
1 AGTCTTACCCGG-ACATA
79344901 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (37 bp):
AGTCTTACCCGGACATAATCTCCACACGTAGTCATCG
Found at i:79345032 original size:49 final size:49
Alignment explanation
Indices: 79344967--79345457 Score: 860
Period size: 49 Copynumber: 10.1 Consensus size: 49
79344957 GCTTTACCAC
*
79344967 ATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
79345016 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
79345065 ATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
79345114 ATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
**
79345163 ATATATACACTTTCACGCTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
79345212 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
**
79345259 ATATATACACTTTCACGCTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
**
79345308 ATATATACACTTTCACGCTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
79345357 ATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
**
79345406 ATATATACACTTTCACGCTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
79345455 ATA
1 ATA
79345458 CTATTATGTA
Statistics
Matches: 425, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 45 0.11
49 380 0.89
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.32
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:79349081 original size:40 final size:40
Alignment explanation
Indices: 79349032--79349342 Score: 489
Period size: 40 Copynumber: 7.8 Consensus size: 40
79349022 CCAGCATGAT
* * *
79349032 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * *
79349072 TGCTCTTCGGGACTTAGTCCGGTTGCATTACTAGCACGAG
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
79349112 TGCTCTTCAGAACTTAGTCTGGATACATCACTAGCACGAG
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
79349152 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
79349192 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
79349232 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
79349272 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
79349312 TGCTCTTCGG-ATTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
79349343 CTCAATTCTC
Statistics
Matches: 253, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 18 0.07
40 235 0.93
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:79351255 original size:37 final size:37
Alignment explanation
Indices: 79351205--79351295 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
79351195 TTATTACGAA
*
79351205 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
79351242 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
*
79351279 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
79351296 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
Found at i:79351426 original size:49 final size:49
Alignment explanation
Indices: 79351362--79351560 Score: 371
Period size: 49 Copynumber: 4.1 Consensus size: 49
79351352 GCTTTACCAC
79351362 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
79351411 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
79351460 ATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
**
79351509 ATATATACACTTTCACGCTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
79351558 ATA
1 ATA
79351561 CTATTGTTGC
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 146 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:79351853 original size:40 final size:40
Alignment explanation
Indices: 79351798--79351878 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
79351788 AGGAAGGTAT
79351798 TAGCACCCTCACGGCGCCCAAAATTGGTATCTCATAAACA
1 TAGCACCCTCACGGCGCCCAAAATTGGTATCTCATAAACA
79351838 TAGCACCCTCACGGCGCCCAAAATTGGTATCTCATAAACA
1 TAGCACCCTCACGGCGCCCAAAATTGGTATCTCATAAACA
79351878 T
1 T
79351879 GTATTGACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (40 bp):
TAGCACCCTCACGGCGCCCAAAATTGGTATCTCATAAACA
Found at i:79352450 original size:2 final size:2
Alignment explanation
Indices: 79352443--79352477 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
79352433 ATATGTGCAA
* *
79352443 AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79352478 AAATATACAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:79352640 original size:2 final size:2
Alignment explanation
Indices: 79352635--79352696 Score: 74
Period size: 2 Copynumber: 32.0 Consensus size: 2
79352625 AACTAATGGC
* * *
79352635 AT AT AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
79352675 AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
79352697 TAGAAATGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
1 2 0.04
2 50 0.96
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:79353228 original size:11 final size:12
Alignment explanation
Indices: 79353212--79353248 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
79353202 AAGAAAAAAA
79353212 GGAAGAGAG-AG
1 GGAAGAGAGAAG
79353223 GGAAGAGAGAAG
1 GGAAGAGAGAAG
79353235 GG-AGAGAGAAG
1 GGAAGAGAGAAG
79353246 GGA
1 GGA
79353249 GGGGAAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:79353249 original size:11 final size:11
Alignment explanation
Indices: 79353210--79353258 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
79353200 GAAAGAAAAA
*
79353210 AAGGAAGAGAG
1 AAGGGAGAGAG
79353221 -AGGGAAGAGAG
1 AAGGG-AGAGAG
79353232 AAGGGAGAGAG
1 AAGGGAGAGAG
*
79353243 AAGGGAG-GGG
1 AAGGGAGAGAG
79353253 AAGGGA
1 AAGGGA
79353259 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 11 0.32
11 19 0.56
12 4 0.12
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:79353554 original size:14 final size:15
Alignment explanation
Indices: 79353519--79353554 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
79353509 TTTTTTTGGT
79353519 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
79353534 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
79353548 TTTTTTT
1 TTTTTTT
79353555 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:79353555 original size:15 final size:16
Alignment explanation
Indices: 79353518--79353555 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
79353508 TTTTTTTTGG
79353518 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
79353534 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
79353548 TTTTTTTT
1 TTTTTTTT
79353556 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:79353555 original size:33 final size:32
Alignment explanation
Indices: 79353518--79353594 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 32
79353508 TTTTTTTTGG
*
79353518 TTTTTTTTGCTGGAAATTTTTTTCTGGAAATTT
1 TTTTTTTTGCTGG-AATTTTTTGCTGGAAATTT
* **
79353551 TTTTTTGGTGCTGGAATTTTTTGCTGGATTTTT
1 TTTTTT-TTGCTGGAATTTTTTGCTGGAAATTT
79353584 TTTTTTTTGCT
1 TTTTTTTTGCT
79353595 TCCCCTCTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
32 4 0.11
33 28 0.74
34 6 0.16
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.64
Consensus pattern (32 bp):
TTTTTTTTGCTGGAATTTTTTGCTGGAAATTT
Found at i:79354034 original size:35 final size:35
Alignment explanation
Indices: 79353994--79354097 Score: 176
Period size: 35 Copynumber: 3.0 Consensus size: 35
79353984 GGGGTGTGTG
*
79353994 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
79354029 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
79354064 ATGGTGCTGGTGGCAG--AGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
79354097 A
1 A
79354098 GAGGCAAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
33 18 0.27
35 48 0.73
ACGTcount: A:0.22, C:0.12, G:0.50, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:79354882 original size:48 final size:50
Alignment explanation
Indices: 79354806--79354952 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
79354796 ATATGACCTA
**
79354806 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
79354854 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
79354908 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
79354953 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:79355232 original size:70 final size:70
Alignment explanation
Indices: 79355009--79355596 Score: 980
Period size: 70 Copynumber: 8.2 Consensus size: 70
79354999 TCAACTCACC
79355009 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
79355074 TCGCCA
65 TCGCAA
79355080 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGT-TTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
79355144 CACCTCTCGCAA
59 CACCTCTCGCAA
*
79355156 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
79355221 CGCAA
66 CGCAA
79355226 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
79355291 CGCCA
66 CGCAA
*
79355296 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
79355361 CACCTCTCGCAA
59 CACCTCTCGCAA
*
79355373 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
79355438 CGCAA
66 CGCAA
79355443 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
79355508 CGCAA
66 CGCAA
79355513 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
79355578 CGCAA
66 CGCAA
*
79355583 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
79355597 CTGTCACTTG
Statistics
Matches: 492, Mismatches: 10, Indels: 31
0.92 0.02 0.06
Matches are distributed among these distances:
69 23 0.05
70 319 0.65
71 11 0.02
72 2 0.00
73 1 0.00
74 2 0.00
75 2 0.00
76 43 0.09
77 89 0.18
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (70 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAA
Found at i:79355396 original size:217 final size:217
Alignment explanation
Indices: 79355009--79355596 Score: 1084
Period size: 217 Copynumber: 2.7 Consensus size: 217
79354999 TCAACTCACC
79355009 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
79355074 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTG-TTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
79355138 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
79355203 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
79355226 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
79355291 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
79355356 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
79355421 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
79355443 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
79355508 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
79355566 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
79355597 CTGTCACTTG
Statistics
Matches: 367, Mismatches: 3, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
216 110 0.30
217 194 0.53
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:79371089 original size:22 final size:21
Alignment explanation
Indices: 79371057--79371106 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
79371047 AACTAATGGC
*
79371057 ATATATACATAATATATATAT
1 ATATACACATAATATATATAT
79371078 ATAATACACATAATATATATAT
1 AT-ATACACATAATATATATAT
79371100 ATATACA
1 ATATACA
79371107 TATTAGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 7 0.26
22 20 0.74
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATACACATAATATATATAT
Found at i:79371643 original size:11 final size:12
Alignment explanation
Indices: 79371627--79371662 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
79371617 GAAAAAAAAA
79371627 GAAGAGAG-AGG
1 GAAGAGAGAAGG
79371638 GAAGAGAGAAGG
1 GAAGAGAGAAGG
79371650 G-AGAGAGAAGG
1 GAAGAGAGAAGG
79371661 GA
1 GA
79371663 GGGGGAAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:79371663 original size:11 final size:11
Alignment explanation
Indices: 79371629--79371673 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
79371619 AAAAAAAAGA
79371629 AGAGAG-AGGG
1 AGAGAGAAGGG
79371639 AAGAGAGAAGGG
1 -AGAGAGAAGGG
79371651 AGAGAGAAGGG
1 AGAGAGAAGGG
* *
79371662 AGGGGGAAGGG
1 AGAGAGAAGGG
79371673 A
1 A
79371674 AATCCGGTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
11 27 0.87
12 4 0.13
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (11 bp):
AGAGAGAAGGG
Found at i:79371971 original size:14 final size:15
Alignment explanation
Indices: 79371936--79371971 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
79371926 TTTTTTGGTT
79371936 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
79371951 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
79371965 TTTTTTT
1 TTTTTTT
79371972 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:79371972 original size:15 final size:16
Alignment explanation
Indices: 79371935--79371972 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
79371925 TTTTTTTGGT
79371935 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
79371951 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
79371965 TTTTTTTT
1 TTTTTTTT
79371973 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:79371972 original size:34 final size:31
Alignment explanation
Indices: 79371934--79372010 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 31
79371924 TTTTTTTTGG
*
79371934 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAATTT
1 TTTTTTTTTGCTGG-AATTTTTTGCTGG--ATTT
**
79371968 TTTTTTGGTGCTGGAATTTTTTGCTGGATTT
1 TTTTTTTTTGCTGGAATTTTTTGCTGGATTT
79371999 TTTTTTTTTGCT
1 TTTTTTTTTGCT
79372011 TCCCCTCTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
31 14 0.37
33 12 0.32
34 12 0.32
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.64
Consensus pattern (31 bp):
TTTTTTTTTGCTGGAATTTTTTGCTGGATTT
Found at i:79371986 original size:33 final size:32
Alignment explanation
Indices: 79371934--79372010 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 32
79371924 TTTTTTTTGG
*
79371934 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAAT
1 TTTTTTTTTGCTGGAAATTTTTTGCTGGAAAT
**
79371966 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATTT
1 TTTTTTTT--TGCTGGAAATTTTTTGCTGGAAAT
79371999 TTTTTTTTTGCT
1 TTTTTTTTTGCT
79372011 TCCCCTCTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
31 4 0.10
32 8 0.20
33 22 0.55
34 6 0.15
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.64
Consensus pattern (32 bp):
TTTTTTTTTGCTGGAAATTTTTTGCTGGAAAT
Found at i:79372452 original size:35 final size:35
Alignment explanation
Indices: 79372412--79372517 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
79372402 GGGGTGTGTG
*
79372412 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
79372447 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
79372482 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
79372517 A
1 A
79372518 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:79381177 original size:17 final size:17
Alignment explanation
Indices: 79381155--79381189 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
79381145 CGGCTTCTCC
79381155 CCGCAAACCCCAAAATG
1 CCGCAAACCCCAAAATG
**
79381172 CCGCAAATGCCAAAATG
1 CCGCAAACCCCAAAATG
79381189 C
1 C
79381190 TTAACCCCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.37, G:0.14, T:0.09
Consensus pattern (17 bp):
CCGCAAACCCCAAAATG
Found at i:79382655 original size:44 final size:44
Alignment explanation
Indices: 79382599--79382687 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
79382589 TTTGATATAG
79382599 AGAATGAACATGAAATTGGTTGAGGATATTATGGATTGATTGAT
1 AGAATGAACATGAAATTGGTTGAGGATATTATGGATTGATTGAT
* *
79382643 AGAATGAGCATGAAATTGGTTGATGATATTATGGATTGATTGAT
1 AGAATGAACATGAAATTGGTTGAGGATATTATGGATTGATTGAT
79382687 A
1 A
79382688 CATGTTTGGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.36, C:0.02, G:0.27, T:0.35
Consensus pattern (44 bp):
AGAATGAACATGAAATTGGTTGAGGATATTATGGATTGATTGAT
Found at i:79382685 original size:20 final size:20
Alignment explanation
Indices: 79382613--79382686 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
79382603 TGAACATGAA
* *
79382613 ATTGGTTGAGGATATTATGG
1 ATTGATTGATGATATTATGG
** *
79382633 ATTGATTGATAGAATGAGCATGAA
1 ATTGATTGAT-G-AT-ATTATG-G
*
79382657 ATTGGTTGATGATATTATGG
1 ATTGATTGATGATATTATGG
79382677 ATTGATTGAT
1 ATTGATTGAT
79382687 ACATGTTTGG
Statistics
Matches: 40, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
20 17 0.43
21 5 0.12
22 4 0.10
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.01, G:0.28, T:0.39
Consensus pattern (20 bp):
ATTGATTGATGATATTATGG
Found at i:79391008 original size:46 final size:46
Alignment explanation
Indices: 79390958--79391132 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
79390948 TGGTTGAGCA
79390958 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79391004 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
79391049 CATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79391096 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79391133 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 85 0.78
47 6 0.06
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79391119 original size:92 final size:93
Alignment explanation
Indices: 79390955--79391125 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
79390945 GGATGGTTGA
* *
79390955 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79391020 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
79391048 GCATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79391112 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
79391126 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 69 0.92
93 6 0.08
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79393434 original size:2 final size:2
Alignment explanation
Indices: 79393427--79393464 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
79393417 TTTATTCTTC
79393427 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79393465 TCTTACCACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79399355 original size:48 final size:45
Alignment explanation
Indices: 79399296--79399589 Score: 245
Period size: 45 Copynumber: 6.4 Consensus size: 45
79399286 CATGTCCCGG
* * *
79399296 ACATGGTCTTACACTAGCTCACATGTCGAGGATGATGCCATGTCCTA
1 ACATGGTCTTACACTAGCTCACATATCAACG-TGATGCCATGTCC-A
* * * * *
79399343 GACATGGTCTTACACTAGCTCTCATCTCCATGTCAATGCCATGTCCA
1 -ACATGGTCTTACACTAGCTCACATATCAACGT-GATGCCATGTCCA
* * * *
79399390 ACATGGTCTTACATTGGCTTACA-ATCAACGCTGATGCCACGTCCA
1 ACATGGTCTTACACTAGCTCACATATCAACG-TGATGCCATGTCCA
* * * *
79399435 ACATGGTCTTACACTGGCTCTCA-ATCAATGCCGATGCCATGTCCA
1 ACATGGTCTTACACTAGCTCACATATCAACG-TGATGCCATGTCCA
* * * * *
79399480 ACATGTTCTTACACTGGCTCTCA-ATCAACGCCGATGTCATGTCCA
1 ACATGGTCTTACACTAGCTCACATATCAACG-TGATGCCATGTCCA
* * * *
79399525 ACATAGTCTTACACTGGCTCTCA-AACAACGCTGATGCCATGTCCA
1 ACATGGTCTTACACTAGCTCACATATCAACG-TGATGCCATGTCCA
* *
79399570 AGATGGTCTTACACTGGCTC
1 ACATGGTCTTACACTAGCTC
79399590 TTATAATTGT
Statistics
Matches: 214, Mismatches: 30, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
45 154 0.72
46 20 0.09
47 2 0.01
48 38 0.18
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
ACATGGTCTTACACTAGCTCACATATCAACGTGATGCCATGTCCA
Found at i:79399436 original size:45 final size:45
Alignment explanation
Indices: 79399329--79399633 Score: 346
Period size: 45 Copynumber: 6.7 Consensus size: 45
79399319 TGTCGAGGAT
* * * * *
79399329 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATCTCCATGTC
1 GATGCCATGTCC-A-ACATGGTCTTACACTGGCTCTCA-ATCAACGCC
* * *
79399377 AATGCCATGTCCAACATGGTCTTACATTGGCT-TACAATCAACGCT
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCT-CAATCAACGCC
* *
79399422 GATGCCACGTCCAACATGGTCTTACACTGGCTCTCAATCAATGCC
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCTCAATCAACGCC
*
79399467 GATGCCATGTCCAACATGTTCTTACACTGGCTCTCAATCAACGCC
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCTCAATCAACGCC
* * * *
79399512 GATGTCATGTCCAACATAGTCTTACACTGGCTCTCAAACAACGCT
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCTCAATCAACGCC
* * * *
79399557 GATGCCATGTCCAAGATGGTCTTACACTGGCTCT-TAT-AATTGTC
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCTCAATCAA-CGCC
*
79399601 AATGCCATGTTCCAAACATGGTCTTACACTGGC
1 GATGCCATG-TCC-AACATGGTCTTACACTGGC
79399634 AGACGAAATG
Statistics
Matches: 221, Mismatches: 31, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
43 2 0.01
44 10 0.05
45 159 0.72
46 38 0.17
47 1 0.00
48 11 0.05
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (45 bp):
GATGCCATGTCCAACATGGTCTTACACTGGCTCTCAATCAACGCC
Found at i:79399543 original size:135 final size:136
Alignment explanation
Indices: 79399329--79399633 Score: 384
Period size: 135 Copynumber: 2.2 Consensus size: 136
79399319 TGTCGAGGAT
* * * * * *
79399329 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATCTCCATGTCAATGCCATGTCCAACAT
1 GATGCCATGTCC-AAACATGGTCTTACACTGGCTCTCATATCAACGCCAATGCCATGTCCAACAT
* * *
79399394 GGTCTTACATTGGCT-TACAATCAACGCTGATGCCACGTCCAACATGGTCTTACACTGGCTCTCA
65 AGTCTTACACTGGCTCT-CAAACAACGCTGATGCCACGTCCAACATGGTCTTACACTGGCTCT-A
79399458 ATCAA-TGCC
128 AT-AATTGCC
* * *
79399467 GATGCCATGTCC-AACATGTTCTTACACTGGCTCTCA-ATCAACGCCGATGTCATGTCCAACATA
1 GATGCCATGTCCAAACATGGTCTTACACTGGCTCTCATATCAACGCCAATGCCATGTCCAACATA
* * *
79399530 GTCTTACACTGGCTCTCAAACAACGCTGATGCCATGTCCAAGATGGTCTTACACTGGCTCTTATA
66 GTCTTACACTGGCTCTCAAACAACGCTGATGCCACGTCCAACATGGTCTTACACTGGCTCTAATA
*
79399595 ATTGTC
131 ATTGCC
*
79399601 AATGCCATGTTCCAAACATGGTCTTACACTGGC
1 GATGCCATG-TCCAAACATGGTCTTACACTGGC
79399634 AGACGAAATG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
133 2 0.01
134 13 0.09
135 78 0.54
136 40 0.28
138 12 0.08
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (136 bp):
GATGCCATGTCCAAACATGGTCTTACACTGGCTCTCATATCAACGCCAATGCCATGTCCAACATA
GTCTTACACTGGCTCTCAAACAACGCTGATGCCACGTCCAACATGGTCTTACACTGGCTCTAATA
ATTGCC
Found at i:79417185 original size:22 final size:22
Alignment explanation
Indices: 79417160--79417204 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
79417150 ATGAGAATAA
79417160 AGAGAG-GATTGAGAATGAATTG
1 AGAGAGAG-TTGAGAATGAATTG
* *
79417182 AGAGATAGTTGAGAGTGAATTG
1 AGAGAGAGTTGAGAATGAATTG
79417204 A
1 A
79417205 AAAAGTGGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24
Consensus pattern (22 bp):
AGAGAGAGTTGAGAATGAATTG
Found at i:79417773 original size:7 final size:7
Alignment explanation
Indices: 79417752--79417812 Score: 61
Period size: 7 Copynumber: 8.9 Consensus size: 7
79417742 TATTTTACCA
*
79417752 TGAATCT
1 TGAACCT
*
79417759 TGAGCCT
1 TGAACCT
79417766 TGAACCT
1 TGAACCT
*
79417773 TGGA-CT
1 TGAACCT
*
79417779 CGAACCT
1 TGAACCT
*
79417786 TGAAACT
1 TGAACCT
*
79417793 TAAACCT
1 TGAACCT
79417800 TGAACCT
1 TGAACCT
79417807 TGAACC
1 TGAACC
79417813 CTAAACCCGA
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
6 4 0.10
7 38 0.90
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (7 bp):
TGAACCT
Found at i:79417806 original size:21 final size:21
Alignment explanation
Indices: 79417780--79417819 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
79417770 CCTTGGACTC
*
79417780 GAACCTTGAAACTTAAACCTT
1 GAACCTTGAAACCTAAACCTT
*
79417801 GAACCTTGAACCCTAAACC
1 GAACCTTGAAACCTAAACC
79417820 CGAGGTTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.30, G:0.10, T:0.23
Consensus pattern (21 bp):
GAACCTTGAAACCTAAACCTT
Found at i:79419032 original size:20 final size:20
Alignment explanation
Indices: 79418978--79419034 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
79418968 AAACATTGAG
*
79418978 GTTTAGAGTTT-AGGTTCGA
1 GTTTAGAGTTTAAGATTCGA
*
79418997 GATTTA-AGATTCAAGATTCGA
1 G-TTTAGAG-TTTAAGATTCGA
79419018 GTTTAGAGTTTAAGATT
1 GTTTAGAGTTTAAGATT
79419035 TAAGTCTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 3 0.10
20 18 0.58
21 10 0.32
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (20 bp):
GTTTAGAGTTTAAGATTCGA
Found at i:79421091 original size:9 final size:9
Alignment explanation
Indices: 79421079--79421134 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79421069 AAAGAACATA
79421079 AAAAATTAT
1 AAAAATTAT
79421088 AAAAAAATTAT
1 --AAAAATTAT
*
79421099 TAAAATTAT
1 AAAAATTAT
*
79421108 TAAAATT-T
1 AAAAATTAT
79421116 ATAAAATTATT
1 A-AAAATTA-T
79421127 AAAAATTA
1 AAAAATTA
79421135 ATTAATGACC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
8 1 0.03
9 21 0.52
10 7 0.17
11 11 0.28
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (9 bp):
AAAAATTAT
Found at i:79421114 original size:18 final size:18
Alignment explanation
Indices: 79421080--79421130 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
79421070 AAGAACATAA
* *
79421080 AAAATTATAAAAAAATTATT
1 AAAATTAT-TAAAATTTA-T
79421100 AAAATTATTAAAATTTAT
1 AAAATTATTAAAATTTAT
79421118 AAAATTATTAAAA
1 AAAATTATTAAAA
79421131 ATTAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 14 0.48
19 7 0.24
20 8 0.28
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATTATTAAAATTTAT
Found at i:79421206 original size:71 final size:68
Alignment explanation
Indices: 79421079--79421234 Score: 170
Period size: 71 Copynumber: 2.2 Consensus size: 68
79421069 AAAGAACATA
* * * * * *
79421079 AAAAATTATAAAAAAATTATTAAAATTATTAAAATTTATAAAATTATTAAAAATTAAT-TAATGA
1 AAAATTTATAAAAAAATTATTAAAATCATAAAAAATTATAAAAATATTAAAAATTAATCTAA-AA
79421143 CCAT
65 CCAT
* * * *
79421147 AAAATTTATAAAAATATTTGATTAGAAATCATAAAAAATTATAAAAATCTTAGACATTAATCTAA
1 AAAATTTATAAAAA-AATT-ATTA-AAATCATAAAAAATTATAAAAATATTAAAAATTAATCTAA
79421212 AACCAT
63 AACCAT
*
79421218 AAATTTTATAAAAAAAT
1 AAAATTTATAAAAAAAT
79421235 AATTTTTTAT
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
68 13 0.18
69 3 0.04
70 6 0.08
71 47 0.65
72 3 0.04
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.35
Consensus pattern (68 bp):
AAAATTTATAAAAAAATTATTAAAATCATAAAAAATTATAAAAATATTAAAAATTAATCTAAAAC
CAT
Found at i:79421445 original size:23 final size:21
Alignment explanation
Indices: 79421407--79421448 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
79421397 TATAAATTTT
79421407 ATAAATTTTAATTAATTTCTA
1 ATAAATTTTAATTAATTTCTA
79421428 ATAATATTTATAATTAATTTC
1 ATAA-ATTT-TAATTAATTTC
79421449 ATGACTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 4 0.21
23 11 0.58
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (21 bp):
ATAAATTTTAATTAATTTCTA
Found at i:79421854 original size:61 final size:61
Alignment explanation
Indices: 79421789--79421904 Score: 178
Period size: 61 Copynumber: 1.9 Consensus size: 61
79421779 AGGCTTATTT
* ** * *
79421789 CCTTAACTTTTAAGTTAAAAGATTTGTAATTATCTAATTTTATTTTTAGGTTTAAAATAAG
1 CCTTAAATTTTAAGCGAAAAGATTTGCAATTATCTAATTTTATTTTTAGGCTTAAAATAAG
*
79421850 CCTTAAATTTTAAGCGAAAAGATTTGCCATTATCTAATTTTATTTTTAGGCTTAA
1 CCTTAAATTTTAAGCGAAAAGATTTGCAATTATCTAATTTTATTTTTAGGCTTAA
79421905 TATGCACTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.34, C:0.09, G:0.10, T:0.46
Consensus pattern (61 bp):
CCTTAAATTTTAAGCGAAAAGATTTGCAATTATCTAATTTTATTTTTAGGCTTAAAATAAG
Found at i:79422150 original size:15 final size:15
Alignment explanation
Indices: 79422120--79422149 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
79422110 GTTAAAAATT
79422120 ATTAAAATTATAAAA
1 ATTAAAATTATAAAA
79422135 ATTAAAA-TATAAAA
1 ATTAAAATTATAAAA
79422149 A
1 A
79422150 AATTTACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTAAAATTATAAAA
Found at i:79422152 original size:16 final size:15
Alignment explanation
Indices: 79422120--79422153 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
79422110 GTTAAAAATT
*
79422120 ATTAAAATTATAAAA
1 ATTAAAATTAAAAAA
79422135 ATTAAAATATAAAAAA
1 ATTAAAAT-TAAAAAA
79422151 ATT
1 ATT
79422154 TACTAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
ATTAAAATTAAAAAA
Found at i:79431183 original size:12 final size:12
Alignment explanation
Indices: 79431166--79431245 Score: 109
Period size: 12 Copynumber: 7.2 Consensus size: 12
79431156 TTATTTAACT
79431166 TACAAATCAGCC
1 TACAAATCAGCC
*
79431178 TACAAATC--CT
1 TACAAATCAGCC
79431188 TACAAATCAGCC
1 TACAAATCAGCC
79431200 TACAAATC--CC
1 TACAAATCAGCC
79431210 TACAAATCAGCC
1 TACAAATCAGCC
79431222 TACAAATC--CC
1 TACAAATCAGCC
79431232 TACAAATCAGCC
1 TACAAATCAGCC
79431244 TA
1 TA
79431246 TATACAGTCC
Statistics
Matches: 60, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
10 29 0.48
12 31 0.52
ACGTcount: A:0.41, C:0.34, G:0.05, T:0.20
Consensus pattern (12 bp):
TACAAATCAGCC
Found at i:79431189 original size:22 final size:22
Alignment explanation
Indices: 79431166--79431245 Score: 151
Period size: 22 Copynumber: 3.6 Consensus size: 22
79431156 TTATTTAACT
*
79431166 TACAAATCAGCCTACAAATCCT
1 TACAAATCAGCCTACAAATCCC
79431188 TACAAATCAGCCTACAAATCCC
1 TACAAATCAGCCTACAAATCCC
79431210 TACAAATCAGCCTACAAATCCC
1 TACAAATCAGCCTACAAATCCC
79431232 TACAAATCAGCCTA
1 TACAAATCAGCCTA
79431246 TATACAGTCC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 57 1.00
ACGTcount: A:0.41, C:0.34, G:0.05, T:0.20
Consensus pattern (22 bp):
TACAAATCAGCCTACAAATCCC
Found at i:79432830 original size:29 final size:29
Alignment explanation
Indices: 79432788--79432846 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
79432778 TACTTATGTA
79432788 TGAAACATACCTGTATCTGACACTCAAAC
1 TGAAACATACCTGTATCTGACACTCAAAC
* *
79432817 TGAAAGATACCTGTATCTGACTCTCAAAC
1 TGAAACATACCTGTATCTGACACTCAAAC
79432846 T
1 T
79432847 CGTGTAACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (29 bp):
TGAAACATACCTGTATCTGACACTCAAAC
Found at i:79436511 original size:124 final size:124
Alignment explanation
Indices: 79436291--79436531 Score: 446
Period size: 124 Copynumber: 1.9 Consensus size: 124
79436281 GGGGACATCG
*
79436291 ATGACCTTAATTAATTAGCTTTGTTGGAATGTTTATCTTTGCAACAACTATATATTACTATTATA
1 ATGACCTTAATTAATTAGCTTCGTTGGAATGTTTATCTTTGCAACAACTATATATTACTATTATA
*
79436356 TTTGTCTGTGCAGGAAATTGAGTTCCCTTTAATAAACAAATAGAAAAAAAAAAAAGTTA
66 TTTGTCTGTGCAGGAAATTGAGTTCCCTTTAATAAACAAAAAGAAAAAAAAAAAAGTTA
79436415 ATGACCTTAATTAATTAGCTTCGTTGGAATGTTTATCTTTGCAACAACTATATATTACTATTATA
1 ATGACCTTAATTAATTAGCTTCGTTGGAATGTTTATCTTTGCAACAACTATATATTACTATTATA
* *
79436480 TTTGTCTGTGCAGGAAATTGCGTTCTCTTTAATAAACAAAAAGAAAAAAAAA
66 TTTGTCTGTGCAGGAAATTGAGTTCCCTTTAATAAACAAAAAGAAAAAAAAA
79436532 GTTAATTGTT
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 113 1.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (124 bp):
ATGACCTTAATTAATTAGCTTCGTTGGAATGTTTATCTTTGCAACAACTATATATTACTATTATA
TTTGTCTGTGCAGGAAATTGAGTTCCCTTTAATAAACAAAAAGAAAAAAAAAAAAGTTA
Found at i:79442547 original size:125 final size:125
Alignment explanation
Indices: 79442379--79442627 Score: 498
Period size: 125 Copynumber: 2.0 Consensus size: 125
79442369 GAACTTAGAG
79442379 GAAAAAGTTGTGATGAAAATAGTGAAGTTGGGACCAATGAGGCTCAAGTTAACTGAAGCGTCGGA
1 GAAAAAGTTGTGATGAAAATAGTGAAGTTGGGACCAATGAGGCTCAAGTTAACTGAAGCGTCGGA
79442444 GTTGGCTGAGTCATCGACAAGGCTTCCATCTATAGGAGAGGTGGGTGATGCATTAGACTA
66 GTTGGCTGAGTCATCGACAAGGCTTCCATCTATAGGAGAGGTGGGTGATGCATTAGACTA
79442504 GAAAAAGTTGTGATGAAAATAGTGAAGTTGGGACCAATGAGGCTCAAGTTAACTGAAGCGTCGGA
1 GAAAAAGTTGTGATGAAAATAGTGAAGTTGGGACCAATGAGGCTCAAGTTAACTGAAGCGTCGGA
79442569 GTTGGCTGAGTCATCGACAAGGCTTCCATCTATAGGAGAGGTGGGTGATGCATTAGACT
66 GTTGGCTGAGTCATCGACAAGGCTTCCATCTATAGGAGAGGTGGGTGATGCATTAGACT
79442628 TCAAGGGTAA
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 124 1.00
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (125 bp):
GAAAAAGTTGTGATGAAAATAGTGAAGTTGGGACCAATGAGGCTCAAGTTAACTGAAGCGTCGGA
GTTGGCTGAGTCATCGACAAGGCTTCCATCTATAGGAGAGGTGGGTGATGCATTAGACTA
Found at i:79447708 original size:32 final size:32
Alignment explanation
Indices: 79447667--79447729 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
79447657 ATATTCGTCC
79447667 ATAAAAGTCACCTAGGCTCAGATCATTTGGTG
1 ATAAAAGTCACCTAGGCTCAGATCATTTGGTG
* * * *
79447699 ATAAAAGTCACTTTGTCTCGGATCATTTGGT
1 ATAAAAGTCACCTAGGCTCAGATCATTTGGT
79447730 TGGACTACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (32 bp):
ATAAAAGTCACCTAGGCTCAGATCATTTGGTG
Found at i:79453077 original size:48 final size:48
Alignment explanation
Indices: 79453006--79453218 Score: 195
Period size: 46 Copynumber: 4.5 Consensus size: 48
79452996 GCTGACGCCG
*
79453006 TGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCA
* ** *
79453054 TGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCA
* ** ** ** *
79453100 TGTCCCAAACATGTCTTACACGGGCTTGTATATCTTGAGGTTGATGTA
1 TGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCA
* * * *
79453148 TGTCCCAGACATGTCTTACATTGGCTCT-CATAATGT---GGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCT-TGTAT-ATCTCAAGGCCGATGCA
* *
79453194 TGTCCTAGACATATCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
79453219 ACACATATTA
Statistics
Matches: 132, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
46 65 0.49
47 4 0.03
48 59 0.45
49 4 0.03
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (48 bp):
TGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCA
Found at i:79453120 original size:94 final size:93
Alignment explanation
Indices: 79453006--79453218 Score: 250
Period size: 94 Copynumber: 2.3 Consensus size: 93
79452996 GCTGACGCCG
*
79453006 TGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCATGTCCCAGACATGTCTT
1 TGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCATGTCCCAGACATGTCTT
*
79453071 ACACTAGCTCTCGTCTCAA-T-GCCGATGCA
66 ACACTAGCTCTC--AT-AAGTGGCCGATGCA
* ** ** ** *
79453100 TGTCCCAAACATGTCTTACACGGGCTTGTATATCTTGAGGTTGATGTATGTCCCAGACATGTCTT
1 TGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCATGTCCCAGACATGTCTT
* *
79453165 ACATTGGCTCTCATAATGTGGCCGATGCA
66 ACACTAGCTCTCATAA-GTGGCCGATGCA
* *
79453194 TGTCCTAGACATATCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
79453219 ACACATATTA
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 1 0.01
94 95 0.96
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (93 bp):
TGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCATGTCCCAGACATGTCTT
ACACTAGCTCTCATAAGTGGCCGATGCA
Found at i:79455662 original size:18 final size:17
Alignment explanation
Indices: 79455639--79455672 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
79455629 TTGGGCTGAG
79455639 ATGGGCCGTGTGGGCCCA
1 ATGGG-CGTGTGGGCCCA
*
79455657 ATGGGCTTGTGGGCCC
1 ATGGGCGTGTGGGCCC
79455673 CACACGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.09, C:0.26, G:0.44, T:0.21
Consensus pattern (17 bp):
ATGGGCGTGTGGGCCCA
Found at i:79474271 original size:34 final size:34
Alignment explanation
Indices: 79474220--79474324 Score: 106
Period size: 34 Copynumber: 3.1 Consensus size: 34
79474210 CAGTGTTGAA
* * **
79474220 CAGTCTGGGCCTAAGCCCATATCAGTTGCAATAT
1 CAGTGTGGGCCTTAGCCCATATCAGTAACAATAT
* *
79474254 CAGTGTGGGCCTTAGCCCA-ATACAATAACAGTAT
1 CAGTGTGGGCCTTAGCCCATAT-CAGTAACAATAT
* * *
79474288 CAGTGTGAGCCTTAGCCCATTTCAGT-ACAGTAT
1 CAGTGTGGGCCTTAGCCCATATCAGTAACAATAT
79474321 CAGT
1 CAGT
79474325 AATGCATACA
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
33 13 0.22
34 46 0.77
35 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.27
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATATCAGTAACAATAT
Found at i:79477147 original size:40 final size:40
Alignment explanation
Indices: 79477081--79477247 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
79477071 AAATTGAATG
* * *
79477081 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79477120 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79477160 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79477200 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79477240 ATATCCGG
1 ATATCCGG
79477248 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79485156 original size:40 final size:40
Alignment explanation
Indices: 79485090--79485240 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
79485080 AAATTGAATG
* * *
79485090 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79485129 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79485169 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
79485209 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
79485241 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79502147 original size:80 final size:80
Alignment explanation
Indices: 79502063--79502211 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
79502053 TATGGTAACC
* * * *
79502063 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
79502127 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
79502143 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
79502208 CCGG
66 CCGG
79502212 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:79502153 original size:40 final size:38
Alignment explanation
Indices: 79502104--79502211 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
79502094 ATCACGATTT
*
79502104 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
79502144 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
79502184 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
79502212 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:79508139 original size:26 final size:27
Alignment explanation
Indices: 79508097--79508157 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
79508087 AGATAAGTTT
* *
79508097 TAGAATTATTGAAATACCC-TGTAGGG
1 TAGAATTACTGAAATACCCTTATAGGG
*
79508123 TAGAATTACTGAGATACCCTTATAGGG
1 TAGAATTACTGAAATACCCTTATAGGG
79508150 TA-AATTAC
1 TAGAATTAC
79508158 CATTTTGCCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 23 0.74
27 8 0.26
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (27 bp):
TAGAATTACTGAAATACCCTTATAGGG
Found at i:79517754 original size:80 final size:80
Alignment explanation
Indices: 79517670--79517818 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
79517660 TATGGTAACC
* * * *
79517670 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
79517734 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
79517750 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
79517815 CCGG
66 CCGG
79517819 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:79517760 original size:40 final size:38
Alignment explanation
Indices: 79517711--79517818 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
79517701 ATCACGATTT
*
79517711 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
79517751 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
79517791 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
79517819 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:79520252 original size:52 final size:54
Alignment explanation
Indices: 79520185--79520389 Score: 202
Period size: 52 Copynumber: 3.8 Consensus size: 54
79520175 TTCCTTTTTA
79520185 AACTTACCATTGCCATGGCTTGACATGGTCTTACATGGTATCCTTG-CTTAT-G
1 AACTTACCATTGCCATGGCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
79520237 AACTCACCATTGCCATGACTTGGCATGGTCTTACATGGGATCTTTGTCTTATCG
1 AACTTACCATTGCCATGGCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
79520291 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCATTGCCATGGCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
79520346 AACTTACCAATT-CCAT-GCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACC-ATTGCCATGGCTTGACATGGTCTTACATGGTATCCTT
79520390 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 29, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
52 41 0.34
53 28 0.23
54 10 0.08
55 41 0.34
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCATTGCCATGGCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:79523025 original size:4 final size:4
Alignment explanation
Indices: 79523016--79523042 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
79523006 GTACTACTAA
79523016 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
79523043 TTTTTTTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:79529223 original size:16 final size:16
Alignment explanation
Indices: 79529204--79529237 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
79529194 TGGAAAAGGC
79529204 TAATTTTGAGGGTTTT
1 TAATTTTGAGGGTTTT
79529220 TAATTTTGAGGGTTTT
1 TAATTTTGAGGGTTTT
79529236 TA
1 TA
79529238 GGCATTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.56
Consensus pattern (16 bp):
TAATTTTGAGGGTTTT
Found at i:79530336 original size:12 final size:12
Alignment explanation
Indices: 79530319--79530370 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
79530309 AATATTATTA
79530319 TTATTTATTAAT
1 TTATTTATTAAT
* *
79530331 TTATTTTTTCATT
1 TTATTTATT-AAT
*
79530344 TTATTT-TTATT
1 TTATTTATTAAT
79530355 ATTATTTATTAAT
1 -TTATTTATTAAT
79530368 TTA
1 TTA
79530371 CTTTTTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
11 3 0.09
12 19 0.56
13 12 0.35
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (12 bp):
TTATTTATTAAT
Found at i:79530346 original size:37 final size:37
Alignment explanation
Indices: 79530300--79530377 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
79530290 TGCAAATTAA
*
79530300 TTTT-ATTTTAATATTATTATTATTTATTAATTTATT
1 TTTTCATTTTAATATTATTATTATTTATTAATTTACT
* *
79530336 TTTTCATTTTATTTTTATTATTATTTATTAATTTACT
1 TTTTCATTTTAATATTATTATTATTTATTAATTTACT
79530373 TTTTC
1 TTTTC
79530378 TTTCTCTTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 4 0.11
37 34 0.89
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.71
Consensus pattern (37 bp):
TTTTCATTTTAATATTATTATTATTTATTAATTTACT
Found at i:79539265 original size:25 final size:25
Alignment explanation
Indices: 79539218--79539265 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
79539208 TTATAACATG
* * * *
79539218 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79539243 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79539266 GTTTATGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79539368 original size:20 final size:20
Alignment explanation
Indices: 79539302--79539368 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
79539292 ATTTTGATAA
*
79539302 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
79539322 ACATGACATGTATGATATTC
1 ACATGATATGTATGATATGC
79539342 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79539362 ACATGAT
1 ACATGAT
79539369 GTAATCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79539449 original size:23 final size:23
Alignment explanation
Indices: 79539419--79539534 Score: 155
Period size: 23 Copynumber: 5.0 Consensus size: 23
79539409 AGGAAGTGAA
79539419 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79539442 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79539465 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
79539487 AAAAGGGCTTTTGCCCCAGTTACTC
1 -AAAGGGCTTATGCCCCAGTTA-TT
*
79539512 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
79539535 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
22 10 0.12
23 46 0.55
24 17 0.20
25 11 0.13
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:79539766 original size:31 final size:31
Alignment explanation
Indices: 79539731--79539791 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
79539721 TTACAGTAAA
79539731 GGCTTCGGCCCAAAAATATGAAATATGAAAG
1 GGCTTCGGCCCAAAAATATGAAATATGAAAG
****
79539762 GGCTTCGGCCCAGTGTTATGAAATATGAAA
1 GGCTTCGGCCCAAAAATATGAAATATGAAA
79539792 TATGAAAAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
GGCTTCGGCCCAAAAATATGAAATATGAAAG
Found at i:79547323 original size:25 final size:25
Alignment explanation
Indices: 79547290--79547337 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79547280 TTATAACATG
* * *
79547290 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79547315 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79547338 GGTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79547421 original size:11 final size:11
Alignment explanation
Indices: 79547385--79547440 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
79547375 CATGGTATGT
79547385 ATGATATGCAC
1 ATGATATGCAC
* *
79547396 ATGACATG--T
1 ATGATATGCAC
79547405 ATGATATGCAC
1 ATGATATGCAC
*
79547416 ATGATATG--T
1 ATGATATGCAC
79547425 ATGATATGCAC
1 ATGATATGCAC
79547436 ATGAT
1 ATGAT
79547441 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79547440 original size:20 final size:20
Alignment explanation
Indices: 79547374--79547440 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
79547364 ATTTTGAGAA
*
79547374 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79547394 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
79547414 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79547434 ACATGAT
1 ACATGAT
79547441 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79547569 original size:24 final size:23
Alignment explanation
Indices: 79547491--79547607 Score: 164
Period size: 23 Copynumber: 5.0 Consensus size: 23
79547481 AGGAAGTGAA
79547491 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79547514 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79547537 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79547560 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
79547584 CAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAG-GGCTTATGCC-CCAGTTAT
79547608 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
23 45 0.53
24 29 0.34
25 11 0.13
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:79549487 original size:29 final size:29
Alignment explanation
Indices: 79549425--79549527 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
79549415 GTGATGAGAT
* * *
79549425 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
79549454 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
79549483 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
79549512 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79549528 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:79551050 original size:31 final size:31
Alignment explanation
Indices: 79551012--79551075 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
79551002 CGTTTACAGT
79551012 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* * **
79551043 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
79551074 AA
1 AA
79551076 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:79561000 original size:40 final size:40
Alignment explanation
Indices: 79560951--79561158 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
79560941 TCTTCGGAAT
* * *
79560951 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
79560990 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
79561030 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
79561070 TTAGCCCGGATACAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
79561110 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
79561150 TTAGCCCGG
1 TTAGCCCGG
79561159 GTATCATTCG
Statistics
Matches: 144, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.02
40 140 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:79563053 original size:80 final size:80
Alignment explanation
Indices: 79562969--79563117 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
79562959 TATGGTAACC
* * * *
79562969 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
79563033 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
79563049 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
79563114 CCGG
66 CCGG
79563118 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:79563059 original size:40 final size:38
Alignment explanation
Indices: 79563010--79563117 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
79563000 ATCACGATTT
*
79563010 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
79563050 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
79563090 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
79563118 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:79566247 original size:28 final size:28
Alignment explanation
Indices: 79566210--79566322 Score: 199
Period size: 28 Copynumber: 4.0 Consensus size: 28
79566200 TGGGCTGTCA
* *
79566210 CATATTCAATGTCTCGCACACTAAGTGT
1 CATACTCAATGTCTCGCACACTAAGTGC
*
79566238 CATACTCAATGTCTCACACACTAAGTGC
1 CATACTCAATGTCTCGCACACTAAGTGC
79566266 CATACTCAATGTCTCGCACACTAAGTGC
1 CATACTCAATGTCTCGCACACTAAGTGC
79566294 CATACTCAATGTCTCGCACACTAAGTGC
1 CATACTCAATGTCTCGCACACTAAGTGC
79566322 C
1 C
79566323 GTATATAGCT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 81 1.00
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (28 bp):
CATACTCAATGTCTCGCACACTAAGTGC
Found at i:79568800 original size:13 final size:13
Alignment explanation
Indices: 79568782--79568808 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79568772 AGAGTAATCA
79568782 CACACGGGCGTGT
1 CACACGGGCGTGT
79568795 CACACGGGCGTGT
1 CACACGGGCGTGT
79568808 C
1 C
79568809 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:79580690 original size:39 final size:40
Alignment explanation
Indices: 79580590--79580768 Score: 177
Period size: 40 Copynumber: 4.5 Consensus size: 40
79580580 TCGAATGATG
* * *
79580590 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
79580630 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
*
79580670 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * *
79580709 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
79580750 -CCGGGCTTCGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
79580769 GATTGGAGCG
Statistics
Matches: 114, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 33 0.29
40 72 0.63
41 9 0.08
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:79580730 original size:79 final size:80
Alignment explanation
Indices: 79580590--79580768 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 80
79580580 TCGAATGATG
* * *
79580590 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
79580655 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
79580670 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
79580732 TCGTGCGAGTCACTATAA
64 TCGTGCGAGTTAATA-AA
**
79580750 -CCGGGCTTCGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
79580769 GATTGGAGCG
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.66
80 28 0.33
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:79582965 original size:41 final size:41
Alignment explanation
Indices: 79582911--79583010 Score: 173
Period size: 41 Copynumber: 2.4 Consensus size: 41
79582901 TGCGGATACT
*
79582911 TGACAGCTTGTGTGAGCAGCACCATATAGCTACGTCTTGAC
1 TGACAGCCTGTGTGAGCAGCACCATATAGCTACGTCTTGAC
*
79582952 TGATAGCCTGTGTGAGCAGCACCATATAGCTACGTCTTGAC
1 TGACAGCCTGTGTGAGCAGCACCATATAGCTACGTCTTGAC
*
79582993 TGACAGCTTGTGTGAGCA
1 TGACAGCCTGTGTGAGCA
79583011 AGCCCGTCTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (41 bp):
TGACAGCCTGTGTGAGCAGCACCATATAGCTACGTCTTGAC
Found at i:79583823 original size:15 final size:17
Alignment explanation
Indices: 79583793--79583824 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
79583783 TTGACACTTG
79583793 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
79583810 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
79583825 AAACATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:79585915 original size:28 final size:28
Alignment explanation
Indices: 79585846--79585946 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
79585836 GACAAGATTG
* * * *
79585846 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
79585876 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79585904 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
79585933 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79585947 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Done.