Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 264 of 335
Found at i:79760652 original size:22 final size:23
Alignment explanation
Indices: 79760627--79760672 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
79760617 CAACCAAATC
79760627 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
79760649 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
79760672 A
1 A
79760673 GGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:79760678 original size:23 final size:23
Alignment explanation
Indices: 79760634--79760678 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
79760624 ATCAATTCAA
*
79760634 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
79760657 CATATTTAT-AAGATAAGGTCAT
1 CATATTT-TCAAGATAAAGTCAT
79760679 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:79769124 original size:22 final size:22
Alignment explanation
Indices: 79769098--79769158 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 22
79769088 ATTAGCTCGT
**
79769098 AAGAGCTTACTGTTCAGCTCGC
1 AAGAGCTTACTGTTCAGCTCAA
*
79769120 CAGAGCTTACTGTTTCAGCTCAA
1 AAGAGCTTACTG-TTCAGCTCAA
79769143 AAGAGCTTACTGTTCA
1 AAGAGCTTACTGTTCA
79769159 TTAGCTCAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 15 0.44
23 19 0.56
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (22 bp):
AAGAGCTTACTGTTCAGCTCAA
Found at i:79769586 original size:50 final size:51
Alignment explanation
Indices: 79769520--79769622 Score: 199
Period size: 50 Copynumber: 2.0 Consensus size: 51
79769510 TTATACGGGC
79769520 TTACTAAGCTATAAAGCTTACTCTGTTTC-TTTTTTTATGTTTTATAGAGG
1 TTACTAAGCTATAAAGCTTACTCTGTTTCTTTTTTTTATGTTTTATAGAGG
79769570 TTACTAAGCTATAAAGCTTACTCTGTTTCTTTTTTTTATGTTTTATAGAGG
1 TTACTAAGCTATAAAGCTTACTCTGTTTCTTTTTTTTATGTTTTATAGAGG
79769621 TT
1 TT
79769623 CGTTAGCTCG
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 29 0.56
51 23 0.44
ACGTcount: A:0.23, C:0.12, G:0.14, T:0.51
Consensus pattern (51 bp):
TTACTAAGCTATAAAGCTTACTCTGTTTCTTTTTTTTATGTTTTATAGAGG
Found at i:79777992 original size:25 final size:25
Alignment explanation
Indices: 79777963--79778010 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79777953 CCTTATAATG
* * *
79777963 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79777988 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79778011 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79778113 original size:20 final size:20
Alignment explanation
Indices: 79778053--79778113 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
79778043 ATAAATATGG
*
79778053 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
79778073 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
79778093 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
79778113 T
1 T
79778114 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:79778193 original size:23 final size:24
Alignment explanation
Indices: 79778163--79778304 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
79778153 GAGGAAGTGA
79778163 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79778186 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79778210 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
79778233 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
79778257 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
79778281 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79778305 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 36 0.33
24 63 0.57
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:79778237 original size:47 final size:47
Alignment explanation
Indices: 79778163--79778304 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
79778153 GAGGAAGTGA
79778163 AAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
79778210 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
79778257 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
79778305 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
47 56 0.64
48 20 0.23
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:79778556 original size:30 final size:31
Alignment explanation
Indices: 79778496--79778558 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79778486 CGTTTACAGT
79778496 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
79778527 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79778557 AA
1 AA
79778559 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79786092 original size:25 final size:25
Alignment explanation
Indices: 79786064--79786111 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79786054 TTATACCATG
* * *
79786064 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79786089 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79786112 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79786214 original size:20 final size:20
Alignment explanation
Indices: 79786154--79786214 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
79786144 ATAAATATGG
*
79786154 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
79786174 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
79786194 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
79786214 T
1 T
79786215 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:79786297 original size:23 final size:24
Alignment explanation
Indices: 79786264--79786402 Score: 180
Period size: 23 Copynumber: 6.0 Consensus size: 24
79786254 GAGGAAGTGA
79786264 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79786288 AAAA-GGCTTATGCCCCA-TTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79786310 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
79786333 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
79786356 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
79786380 AAAAGAGGC-TAGGCCTCAGTTAT
1 AAAAG-GGCTTATGCCCCAGTTAT
79786403 ATGATAAAGC
Statistics
Matches: 104, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
22 18 0.17
23 50 0.48
24 33 0.32
25 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:79786629 original size:31 final size:31
Alignment explanation
Indices: 79786594--79786657 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79786584 CGTTTACAGT
79786594 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
79786625 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79786656 AA
1 AA
79786658 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79787655 original size:27 final size:27
Alignment explanation
Indices: 79787638--79787858 Score: 334
Period size: 27 Copynumber: 8.1 Consensus size: 27
79787628 TTACCCTATG
*
79787638 AGGGTAAAATCGTCATTTTATCACATA
1 AGGGCAAAATCGTCATTTTATCACATA
*
79787665 AGGGCAATATCGTCATTTTTATCACATA
1 AGGGCAAAATCGTCA-TTTTATCACATA
* *
79787693 AGGGCAATATCGTTATTTTATCACATA
1 AGGGCAAAATCGTCATTTTATCACATA
*
79787720 AGGGCAATATCGTCATTTTATCACATA
1 AGGGCAAAATCGTCATTTTATCACATA
* *
79787747 AGGACAATATCGTCATTTTATCACATA
1 AGGGCAAAATCGTCATTTTATCACATA
* *
79787774 AGGACAATATCGTCATTTTATCACATA
1 AGGGCAAAATCGTCATTTTATCACATA
*
79787801 AGGGCAATATCGTCATTTTATCACATA
1 AGGGCAAAATCGTCATTTTATCACATA
*
79787828 AGGGCAATATCGTCATTTTATCACATA
1 AGGGCAAAATCGTCATTTTATCACATA
79787855 AGGG
1 AGGG
79787859 TTCAAGTACG
Statistics
Matches: 187, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
27 161 0.86
28 26 0.14
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (27 bp):
AGGGCAAAATCGTCATTTTATCACATA
Found at i:79787765 original size:54 final size:54
Alignment explanation
Indices: 79787646--79787858 Score: 390
Period size: 54 Copynumber: 3.9 Consensus size: 54
79787636 TGAGGGTAAA
79787646 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCA-TTTTATCACATAAGGGCAAT
* *
79787701 ATCGTTATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGACAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGCAAT
*
79787755 ATCGTCATTTTATCACATAAGGACAATATCGTCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGCAAT
79787809 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGG
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGG
79787859 TTCAAGTACG
Statistics
Matches: 152, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
54 119 0.78
55 33 0.22
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (54 bp):
ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGCAAT
Found at i:79787800 original size:81 final size:81
Alignment explanation
Indices: 79787646--79787857 Score: 388
Period size: 81 Copynumber: 2.6 Consensus size: 81
79787636 TGAGGGTAAA
* *
79787646 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTTATCACATAAGGGCAATATCGTTATTT
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCA-TTTTATCACATAAGGACAATATCGTCATTT
79787711 TATCACATAAGGGCAAT
65 TATCACATAAGGGCAAT
*
79787728 ATCGTCATTTTATCACATAAGGACAATATCGTCATTTTATCACATAAGGACAATATCGTCATTTT
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGACAATATCGTCATTTT
79787793 ATCACATAAGGGCAAT
66 ATCACATAAGGGCAAT
79787809 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGG
1 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGG
79787858 GTTCAAGTAC
Statistics
Matches: 126, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
81 93 0.74
82 33 0.26
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (81 bp):
ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGACAATATCGTCATTTT
ATCACATAAGGGCAAT
Found at i:79788221 original size:16 final size:16
Alignment explanation
Indices: 79788200--79788238 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
79788190 CCCACTTTTT
*
79788200 GGCTTTTTAGCCTTTC
1 GGCTTTTAAGCCTTTC
**
79788216 GGCTTTTAAGGTTTTC
1 GGCTTTTAAGCCTTTC
79788232 GGCTTTT
1 GGCTTTT
79788239 CATCCTTTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.18, G:0.23, T:0.51
Consensus pattern (16 bp):
GGCTTTTAAGCCTTTC
Found at i:79793219 original size:19 final size:20
Alignment explanation
Indices: 79793180--79793222 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
79793170 TCCGTGGACT
*
79793180 TGGGTTGAGAATTGGCCAAA
1 TGGGTTGAGAATGGGCCAAA
*
79793200 TGGGTTG-GAATGGGCTAAA
1 TGGGTTGAGAATGGGCCAAA
79793219 TGGG
1 TGGG
79793223 CCTCATGGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.26, C:0.07, G:0.42, T:0.26
Consensus pattern (20 bp):
TGGGTTGAGAATGGGCCAAA
Found at i:79793346 original size:29 final size:29
Alignment explanation
Indices: 79793302--79793363 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
79793292 GTGAGCATGA
*
79793302 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
*
79793330 ATATGAATATGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
79793359 ATATG
1 ATATG
79793364 CATGTATGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:79793674 original size:27 final size:26
Alignment explanation
Indices: 79793622--79793674 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
79793612 AATCATAATT
* * *
79793622 AAGGGAAAATTACCGAAATGCACCTA
1 AAGGGAAAATGACCAAAATACACCTA
*
79793648 AAGGAGAAAATGACCAAAATACCCCTA
1 AAGG-GAAAATGACCAAAATACACCTA
79793675 GGTGTTGAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.49, C:0.21, G:0.17, T:0.13
Consensus pattern (26 bp):
AAGGGAAAATGACCAAAATACACCTA
Found at i:79799525 original size:18 final size:18
Alignment explanation
Indices: 79799502--79799541 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
79799492 ACCATCGTAT
*
79799502 AATGAAAGTTC-TACGATC
1 AATGAAA-TTCATACAATC
79799520 AATGAAATTCATACAATC
1 AATGAAATTCATACAATC
79799538 AATG
1 AATG
79799542 TTTCAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (18 bp):
AATGAAATTCATACAATC
Found at i:79804226 original size:40 final size:40
Alignment explanation
Indices: 79804189--79804374 Score: 229
Period size: 40 Copynumber: 4.7 Consensus size: 40
79804179 GCTACTCGTT
*
79804189 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
79804229 CAAATGCCTTCGGGACTTAAG-CCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-AGCCCGGATTTAGTAACTCGCA
*
79804269 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
79804309 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
79804350 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79804375 CATCATTCGA
Statistics
Matches: 133, Mismatches: 7, Indels: 12
0.88 0.05 0.08
Matches are distributed among these distances:
39 5 0.04
40 114 0.86
41 14 0.11
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:79812333 original size:40 final size:40
Alignment explanation
Indices: 79812289--79812481 Score: 205
Period size: 40 Copynumber: 4.8 Consensus size: 40
79812279 GGATATAGCT
* *
79812289 ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
79812329 ACTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
79812369 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTA
1 ACTCGTACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* * * * * *
79812409 ACTCGCACGAATGCCTTC-AGATCTTAGTCCGGATATAGTC
1 ACTCGTACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
79812449 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGTACAAATGCCTTCGGGACTTAGCCCGGA
79812482 CATCATTCGA
Statistics
Matches: 135, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 121 0.90
41 11 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:79819997 original size:28 final size:28
Alignment explanation
Indices: 79819957--79820068 Score: 127
Period size: 28 Copynumber: 4.0 Consensus size: 28
79819947 GGCTATGTAC
* *
79819957 GACACTTAATGTGTAAGATATCGAGTAT
1 GACACTTAGTGTGCAAGATATCGAGTAT
* * *
79819985 GACACTTAGTGTGCGAGATATTGAGTGT
1 GACACTTAGTGTGCAAGATATCGAGTAT
79820013 -AGCACTTAGTGTGCAAGATATCGAGTAT
1 GA-CACTTAGTGTGCAAGATATCGAGTAT
* * * *
79820041 GGCACTTAGTGTGCGAGACATTGAGTAT
1 GACACTTAGTGTGCAAGATATCGAGTAT
79820069 TCAACGACAT
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
27 1 0.01
28 69 0.99
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.30
Consensus pattern (28 bp):
GACACTTAGTGTGCAAGATATCGAGTAT
Found at i:79820047 original size:56 final size:56
Alignment explanation
Indices: 79819959--79820066 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 56
79819949 CTATGTACGA
* *
79819959 CACTTAATGTGTAAGATATCGAGTATGACACTTAGTGTGCGAGATATTGAGTGTAG
1 CACTTAATGTGCAAGATATCGAGTATGACACTTAGTGTGCGAGACATTGAGTGTAG
* *
79820015 CACTTAGTGTGCAAGATATCGAGTATGGCACTTAGTGTGCGAGACATTGAGT
1 CACTTAATGTGCAAGATATCGAGTATGACACTTAGTGTGCGAGACATTGAGT
79820067 ATTCAACGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (56 bp):
CACTTAATGTGCAAGATATCGAGTATGACACTTAGTGTGCGAGACATTGAGTGTAG
Found at i:79822538 original size:49 final size:49
Alignment explanation
Indices: 79822468--79822774 Score: 537
Period size: 49 Copynumber: 6.3 Consensus size: 49
79822458 CCCTTCGGGA
*
79822468 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79822515 CTTATCACATATATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
79822564 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
79822613 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79822662 CTTATCACATATATACACACTTTCACATTCTTCACATTGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79822711 CTTATCACATATATACACACTTTCACATTCATCACATCGACCTTTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
79822760 CTTATCACATATATA
1 CTTATCACATATATA
79822775 TACCTCATAC
Statistics
Matches: 249, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 10 0.04
48 1 0.00
49 238 0.96
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79828627 original size:40 final size:39
Alignment explanation
Indices: 79828516--79828666 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
79828506 TTAATCACGT
* * *
79828516 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
79828556 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
79828596 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
79828636 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
79828667 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:79828650 original size:80 final size:79
Alignment explanation
Indices: 79828516--79828666 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
79828506 TTAATCACGT
*
79828516 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
79828581 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
79828596 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
79828659 CCGGATAT
64 CCGGATAT
79828667 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:79836640 original size:40 final size:39
Alignment explanation
Indices: 79836529--79836678 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 39
79836519 TTAATCACGT
* * *
79836529 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
79836569 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
79836609 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
79836649 GCATATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATGCCTTCGGGTCTTAGCCCGGATAT
79836679 CATTCAATTT
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
38 13 0.14
39 11 0.12
40 67 0.74
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:79842039 original size:42 final size:40
Alignment explanation
Indices: 79841940--79842042 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 40
79841930 CTATTACACG
79841940 GCCTGGCACACGGCGTGTGAGGTTATTTCAAAGGGTACAA
1 GCCTGGCACACGGCGTGTGAGGTTATTTCAAAGGGTACAA
* * *
79841980 GCCCTAGTACACGGGCGTGT-AGGGTTATTTCAAAGGGTACATT
1 G-CCTGGCACAC-GGCGTGTGA-GGTTATTTCAAAGGGTACA-A
79842023 GCCTGGCACACAGGCGTGTG
1 GCCTGGCACAC-GGCGTGTG
79842043 GCTTGACTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.02
41 9 0.17
42 41 0.79
43 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.23
Consensus pattern (40 bp):
GCCTGGCACACGGCGTGTGAGGTTATTTCAAAGGGTACAA
Found at i:79844285 original size:19 final size:20
Alignment explanation
Indices: 79844260--79844301 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
79844250 TTGATATTTC
*
79844260 AAAAAATAGTGATACTTAAT
1 AAAAAGTAGTGATACTTAAT
*
79844280 AAAAATGTATTGATACTTAAT
1 AAAAA-GTAGTGATACTTAAT
79844301 A
1 A
79844302 TGTAACGCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (20 bp):
AAAAAGTAGTGATACTTAAT
Found at i:79846021 original size:26 final size:24
Alignment explanation
Indices: 79845983--79846029 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
79845973 AGCTATGTAA
79845983 TTCACACAGGTGTGTGGGCCCACC
1 TTCACACAGGTGTGTGGGCCCACC
79846007 TTCACACAGGTGTGTGGGCCCAC
1 TTCACACAGGTGTGTGGGCCCAC
79846030 ATGGACTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.21
Consensus pattern (24 bp):
TTCACACAGGTGTGTGGGCCCACC
Found at i:79861447 original size:27 final size:27
Alignment explanation
Indices: 79861416--79861471 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
79861406 TCTGACAGAT
79861416 AGAGAGTGGGGAAACTTCAGATTTTGG
1 AGAGAGTGGGGAAACTTCAGATTTTGG
79861443 AGAGAGTGGGGAAACTTCAGATTTTGG
1 AGAGAGTGGGGAAACTTCAGATTTTGG
79861470 AG
1 AG
79861472 TGAATAGCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.38, T:0.25
Consensus pattern (27 bp):
AGAGAGTGGGGAAACTTCAGATTTTGG
Found at i:79863477 original size:27 final size:28
Alignment explanation
Indices: 79863420--79863489 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
79863410 AAATTTGTAC
**
79863420 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
79863448 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
79863475 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79863490 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:79863498 original size:27 final size:27
Alignment explanation
Indices: 79863420--79863501 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
79863410 AAATTTGTAC
* *
79863420 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
79863448 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
79863475 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
79863502 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:79871400 original size:27 final size:28
Alignment explanation
Indices: 79871343--79871412 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
79871333 AAATTTGTAC
**
79871343 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
79871371 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
79871398 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79871413 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:79871421 original size:27 final size:27
Alignment explanation
Indices: 79871343--79871424 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
79871333 AAATTTGTAC
* *
79871343 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
79871371 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
79871398 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
79871425 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:79874116 original size:27 final size:28
Alignment explanation
Indices: 79874059--79874128 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
79874049 AAAATTGTAC
**
79874059 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
79874087 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
79874114 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79874129 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:79874137 original size:27 final size:28
Alignment explanation
Indices: 79874030--79874140 Score: 102
Period size: 27 Copynumber: 4.0 Consensus size: 28
79874020 GACAAGATTG
* * *
79874030 GCACTAAGTGTGCGGATTTAAAATTGTACA
1 GCACTAAGTGTGCGGACTT--AATTATATA
* * *
79874060 GCACTAAGTGTGCGAATTTGATTATATA
1 GCACTAAGTGTGCGGACTTAATTATATA
* *
79874088 GCACTATGTGTGC-GAGC-TGATTATATA
1 GCACTAAGTGTGCGGA-CTTAATTATATA
79874115 GCACTAAGTGTGCGGACTT-ATTATAT
1 GCACTAAGTGTGCGGACTTAATTATAT
79874141 GCTTTTGCAT
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
27 31 0.44
28 21 0.30
30 18 0.26
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGGACTTAATTATATA
Found at i:79882040 original size:27 final size:28
Alignment explanation
Indices: 79881983--79882052 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
79881973 AAATTTGTAC
**
79881983 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
79882011 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
79882038 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79882053 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:79882061 original size:27 final size:27
Alignment explanation
Indices: 79881983--79882064 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
79881973 AAATTTGTAC
* *
79881983 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
79882011 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
79882038 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
79882065 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:79887193 original size:19 final size:21
Alignment explanation
Indices: 79887154--79887195 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
79887144 GCCTTGAGCA
*
79887154 ATTTTGACTTGTTTGAAAATT
1 ATTTTGACTTGTATGAAAATT
79887175 ATTTTGACTTG-AT-AAAATT
1 ATTTTGACTTGTATGAAAATT
79887194 AT
1 AT
79887196 AAACACTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 1 0.05
21 11 0.55
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (21 bp):
ATTTTGACTTGTATGAAAATT
Found at i:79888611 original size:38 final size:38
Alignment explanation
Indices: 79888569--79888656 Score: 167
Period size: 38 Copynumber: 2.3 Consensus size: 38
79888559 TTCATGGTTG
79888569 TAATTAACCTAAAATTAGATATTTTACCAATTAATTAT
1 TAATTAACCTAAAATTAGATATTTTACCAATTAATTAT
*
79888607 TAATTAACCTAAAATTAGATATTTTACCAATTATTTAT
1 TAATTAACCTAAAATTAGATATTTTACCAATTAATTAT
79888645 TAATTAACCTAA
1 TAATTAACCTAA
79888657 TTAATACCTC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.42
Consensus pattern (38 bp):
TAATTAACCTAAAATTAGATATTTTACCAATTAATTAT
Found at i:79893338 original size:40 final size:40
Alignment explanation
Indices: 79893242--79893459 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
79893232 CGAATGGTAT
* * * *
79893242 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
79893282 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
79893322 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
79893362 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
79893402 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
79893442 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
79893460 ACAATCGAGC
Statistics
Matches: 154, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 145 0.94
41 8 0.05
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:79893455 original size:120 final size:120
Alignment explanation
Indices: 79893242--79893459 Score: 278
Period size: 120 Copynumber: 1.8 Consensus size: 120
79893232 CGAATGGTAT
* * *
79893242 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAATTG
* * *
79893307 TGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 TGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * *
79893362 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAA-TTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAAT
* * *
79893425 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
64 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
79893460 ACAATCGAGC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
119 1 0.01
120 75 0.91
121 6 0.07
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAATTG
TGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:79893480 original size:40 final size:40
Alignment explanation
Indices: 79893242--79893485 Score: 154
Period size: 40 Copynumber: 6.1 Consensus size: 40
79893232 CGAATGGTAT
* * * * * *
79893242 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTATGTCCCGAAGGCAATCGTGC-GAGTCACTATAA
* * * * * * *
79893282 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTATG-TCCCGAAGGCAATCGTGCGAGTCACTATAA
* * * * * * *
79893322 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * * *
79893362 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
1 CCGGGCTATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* *
79893401 TCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCT-ATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * * *
79893442 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
79893482 CCGG
1 CCGG
79893486 TTAAATTCCG
Statistics
Matches: 175, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 5 0.03
40 159 0.91
41 11 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
Found at i:79893494 original size:80 final size:80
Alignment explanation
Indices: 79893308--79893485 Score: 194
Period size: 80 Copynumber: 2.2 Consensus size: 80
79893298 AGGCATTTGT
* * * * * * * * *
79893308 GCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGT
1 GCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGT
* * *
79893373 CCCGAAGGCATTCGT
66 CCCGAAGACAATCGA
* * * *
79893388 GCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGT
1 GCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGT
79893453 CCCGAAGACAATCGA
66 CCCGAAGACAATCGA
* *
79893468 GCGAGTCGCTATATCCGG
1 GCGAGTCACTAAATCCGG
79893486 TTAAATTCCG
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (80 bp):
GCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGT
CCCGAAGACAATCGA
Found at i:79899779 original size:40 final size:40
Alignment explanation
Indices: 79899683--79899901 Score: 244
Period size: 40 Copynumber: 5.5 Consensus size: 40
79899673 CGAATGGTGT
* * * *
79899683 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
79899723 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
79899763 CCGGGTTAAGTCCCGAAGGCATTTCGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTT-GTGCGAGTTACTAAAA
* * *
79899804 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
79899844 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
79899884 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
79899902 ACAATCGAGC
Statistics
Matches: 154, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 106 0.69
41 47 0.31
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:79899835 original size:81 final size:80
Alignment explanation
Indices: 79899683--79899915 Score: 227
Period size: 81 Copynumber: 2.9 Consensus size: 80
79899673 CGAATGGTGT
* * * * * * *
79899683 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TCACCAAAACCGGGCTAAG-TCCCGAAGGCATT
*
79899746 TGTGCGAGTTACCAAAA
64 CGTGCGAGTTACCAAAA
* * * * *
79899763 CCGGGTTAAGTCCCGAAGGCATTTCGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
79899828 GTGCGAGTTACTAAAT
65 GTGCGAGTTACCAAAA
* * * * * *
79899844 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTCG
*
79899909 AGCGAGT
66 TGCGAGT
79899916 CGCTATATCG
Statistics
Matches: 126, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 59 0.47
81 62 0.49
82 5 0.04
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAAA
Found at i:79899897 original size:121 final size:121
Alignment explanation
Indices: 79899683--79899901 Score: 280
Period size: 121 Copynumber: 1.8 Consensus size: 121
79899673 CGAATGGTGT
* * *
79899683 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAATTG
* * *
79899748 TGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTCGTGCGAGTTACCAAAA
66 TGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTCGTGCGAGTTACCAAAA
* * * * *
79899804 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAA-TTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAAT
* * *
79899867 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
64 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
79899902 ACAATCGAGC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
120 1 0.01
121 75 0.91
122 6 0.07
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAATTG
TGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTCGTGCGAGTTACCAAAA
Found at i:79904961 original size:28 final size:28
Alignment explanation
Indices: 79904929--79904998 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
79904919 ATAATAAGCC
* *
79904929 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
79904957 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
79904985 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79904999 CAATACATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:79912673 original size:28 final size:29
Alignment explanation
Indices: 79912641--79912739 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
79912631 ATAATAAGCC
*
79912641 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
79912669 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
79912697 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
79912726 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79912740 CAATTCATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:79916226 original size:23 final size:22
Alignment explanation
Indices: 79916200--79916368 Score: 203
Period size: 23 Copynumber: 7.4 Consensus size: 22
79916190 TAGGAATCTA
*
79916200 TCGGCTACCTCTCAGTGGTAGCT
1 TCGGCTACAT-TCAGTGGTAGCT
*
79916223 TCGGCTACTATACAGTGGTAGCT
1 TCGGCTAC-ATTCAGTGGTAGCT
* *
79916246 TCGGCCACAATTCAGCGGTAGCT
1 TCGGCTAC-ATTCAGTGGTAGCT
*
79916269 TCAGCTACATCTCAGTGGTAGCT
1 TCGGCTACAT-TCAGTGGTAGCT
79916292 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACAT-TCAGTGGTAGCT
*
79916315 TCGGCTACAATACAGTGGTAGCT
1 TCGGCTAC-ATTCAGTGGTAGCT
* *
79916338 TTGGCTACAATACAGTGGTAGCT
1 TCGGCTAC-ATTCAGTGGTAGCT
79916361 TCGGCTAC
1 TCGGCTAC
79916369 GTTACTGTGA
Statistics
Matches: 130, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
22 2 0.02
23 125 0.96
24 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.28
Consensus pattern (22 bp):
TCGGCTACATTCAGTGGTAGCT
Found at i:79916314 original size:69 final size:69
Alignment explanation
Indices: 79916203--79916368 Score: 228
Period size: 69 Copynumber: 2.4 Consensus size: 69
79916193 GAATCTATCG
* *
79916203 GCTACCTCTCAGTGGTAGCTTCGGCTACTATACAGTGGTAGCTTCGGCCACAATTCAGCGGTAGC
1 GCTACATCTCAGTGGTAGCTTCGGCTACTATACAGTGGTAGCTTCGGCCACAATACAGCGGTAGC
79916268 TTCA
66 TTCA
* * *
79916272 GCTACATCTCAGTGGTAGCTTCGGCTAC-ATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
1 GCTACATCTCAGTGGTAGCTTCGGCTACTAT-ACAGTGGTAGCTTCGGCCACAATACAGCGGTAG
**
79916336 CTTTG
65 CTTCA
*
79916341 GCTACAAT-ACAGTGGTAGCTTCGGCTAC
1 GCTAC-ATCTCAGTGGTAGCTTCGGCTAC
79916369 GTTACTGTGA
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
68 2 0.02
69 83 0.95
70 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.28
Consensus pattern (69 bp):
GCTACATCTCAGTGGTAGCTTCGGCTACTATACAGTGGTAGCTTCGGCCACAATACAGCGGTAGC
TTCA
Found at i:79918917 original size:49 final size:48
Alignment explanation
Indices: 79918803--79919293 Score: 778
Period size: 47 Copynumber: 10.3 Consensus size: 48
79918793 ATGAGATATG
79918803 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
*
79918850 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTA
*
79918899 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTGTG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
79918946 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
* *
79918993 TATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTA
79919042 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTA
79919091 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTA
79919140 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
* *
79919187 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
* * * * * * *
79919234 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
*
79919281 TAAATGTGATAAG
1 TATATGTGATAAG
79919294 TCCCGAAGGG
Statistics
Matches: 422, Mismatches: 17, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
47 231 0.55
48 5 0.01
49 186 0.44
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (48 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
Found at i:79918930 original size:22 final size:22
Alignment explanation
Indices: 79918902--79918977 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
79918892 GTGTGTATAT
79918902 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
79918924 ATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
79918949 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
79918971 ATGTGAT
1 ATGTGAT
79918978 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:79918950 original size:96 final size:95
Alignment explanation
Indices: 79918803--79919293 Score: 772
Period size: 96 Copynumber: 5.1 Consensus size: 95
79918793 ATGAGATATG
*
79918803 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTA
*
79918868 ATGGCCAATGTGATGAATGTGAAAGTGTGTA
66 ATGGCCGATGTGATGAATGTGAAAG-GTGTA
79918899 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTA
79918964 ATGGCCGATGTGATGAATGTGAAA-GTGTA
66 ATGGCCGATGTGATGAATGTGAAAGGTGTA
* *
79918993 TATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG--TATATGTGATAAGGCC
79919058 TAATGGCCGATGTGATGAATGTGAAAGTGTGTA
64 TAATGGCCGATGTGATGAATGTGAAAG-GTGTA
79919091 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG--TATATGTGATAAGGCC
79919156 TAATGGCCGATGTGATGAATGTG-AAGGTGTA
64 TAATGGCCGATGTGATGAATGTGAAAGGTGTA
* * * * *
79919187 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTA
* * * * *
79919252 GTGGCCAACGTGATGGATGTGGAA-GTGTA
66 ATGGCCGATGTGATGAATGTGAAAGGTGTA
*
79919281 TAAATGTGATAAG
1 TATATGTGATAAG
79919294 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
94 100 0.27
95 2 0.01
96 178 0.48
97 3 0.01
98 91 0.24
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (95 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGGTGTA
Found at i:79927090 original size:23 final size:23
Alignment explanation
Indices: 79927064--79927265 Score: 237
Period size: 23 Copynumber: 8.8 Consensus size: 23
79927054 AGCTACTTCT
79927064 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* * *
79927087 CAGTGGTTGCTTCGGTTACAGTA
1 CAGTGGTAGCTTCGGCTACAATA
* * *
79927110 CAATGGTAGCTTTGGCTAC-ATCT
1 CAGTGGTAGCTTCGGCTACAAT-A
* *
79927133 CAGTGGTAGCTTCGTCTACAAGA
1 CAGTGGTAGCTTCGGCTACAATA
*
79927156 CAGTGGTAGCTTCGGCTAC-ATCT
1 CAGTGGTAGCTTCGGCTACAAT-A
79927179 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* *
79927202 CAGTGGTAGCTTTGGCTATAATA
1 CAGTGGTAGCTTCGGCTACAATA
**
79927225 CAGTGGTAGCTTCGGCTACGTTA
1 CAGTGGTAGCTTCGGCTACAATA
**
79927248 CAGTTATAGCTTCGGCTA
1 CAGTGGTAGCTTCGGCTA
79927266 TATTATAGTG
Statistics
Matches: 149, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
22 2 0.01
23 144 0.97
24 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACAATA
Found at i:79929493 original size:55 final size:55
Alignment explanation
Indices: 79929409--79929519 Score: 186
Period size: 55 Copynumber: 2.0 Consensus size: 55
79929399 AGAGTTACAC
*
79929409 GGGTAAGGACATGGGCTGGGACATGACCGTCTGTCCCTATTTTGATTATTATATG
1 GGGTAAGGACATGGGCTGGGACATGACCGTCTGTCCCTATTTTGATTATTACATG
* * *
79929464 GGGTATGGACATGGGCTGGGACATGACCGTTTGTCCCTATTTTGATTGTTACATG
1 GGGTAAGGACATGGGCTGGGACATGACCGTCTGTCCCTATTTTGATTATTACATG
79929519 G
1 G
79929520 CCTAAGTCAC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (55 bp):
GGGTAAGGACATGGGCTGGGACATGACCGTCTGTCCCTATTTTGATTATTACATG
Found at i:79933946 original size:39 final size:38
Alignment explanation
Indices: 79933903--79934034 Score: 183
Period size: 39 Copynumber: 3.4 Consensus size: 38
79933893 GGTCTTTAAC
* ** *
79933903 CCGGATATTTTTCCAGCACGTAGCCTGCAGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGC-GACCTCATGT
79933942 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGC-GACCTCATGT
* *
79933981 CTGGATATATTTCAAGCATATAGCCTGCGAACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCG-ACCTCATGT
79934020 CCGGATATATTTCCA
1 CCGGATATATTTCCA
79934035 ATCTCATATA
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 82 0.99
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (38 bp):
CCGGATATATTTCCAGCATATAGCCTGCGACCTCATGT
Found at i:79936329 original size:7 final size:7
Alignment explanation
Indices: 79936295--79936331 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
79936285 TTAAGTGATA
*
79936295 AGGGATA
1 AGGGATG
79936302 AGGGATG
1 AGGGATG
79936309 AGGGATG
1 AGGGATG
*
79936316 ATGGATG
1 AGGGATG
79936323 AGGGATG
1 AGGGATG
79936330 AG
1 AG
79936332 TAGAAATGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.32, C:0.00, G:0.51, T:0.16
Consensus pattern (7 bp):
AGGGATG
Found at i:79938085 original size:40 final size:40
Alignment explanation
Indices: 79938025--79938228 Score: 234
Period size: 40 Copynumber: 5.1 Consensus size: 40
79938015 CGGGATTTAA
* ** *
79938025 CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
* *** *
79938065 CCGGATTTGGTAACTTGCAC-AATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
79938105 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
79938145 CCGGATATAACAACTCGCACGAATGCCTTCGAGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** *
79938185 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
79938225 CCGG
1 CCGG
79938229 GTATCATTCA
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
40 140 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79946282 original size:40 final size:40
Alignment explanation
Indices: 79946222--79946423 Score: 225
Period size: 40 Copynumber: 5.1 Consensus size: 40
79946212 CGGGATTTAA
* ** *
79946222 CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
* *** *
79946262 CCGGATTTGGTAACTTGCAC-AATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
79946302 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
79946342 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAG-
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** *
79946381 CCGGATATAATC-ACTAGCATAAATGCCTT-GGGACTTAGC
1 CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
79946420 CCGG
1 CCGG
79946424 GTATCATTCA
Statistics
Matches: 142, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
38 8 0.06
39 28 0.20
40 104 0.73
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79948364 original size:13 final size:13
Alignment explanation
Indices: 79948346--79948371 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79948336 AGAATAAAAT
79948346 TTAATTAATTTAA
1 TTAATTAATTTAA
79948359 TTAATTAATTTAA
1 TTAATTAATTTAA
79948372 AACCCAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTAATTAATTTAA
Found at i:79952159 original size:42 final size:42
Alignment explanation
Indices: 79952112--79952218 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
79952102 TATTGGTCTC
79952112 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
79952154 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
79952196 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
79952219 ATTGTACAGC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:79952233 original size:30 final size:30
Alignment explanation
Indices: 79952197--79952327 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
79952187 GACAAGATTG
* * * * *
79952197 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
79952227 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
79952255 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79952285 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79952314 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79952328 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:79952288 original size:58 final size:58
Alignment explanation
Indices: 79952197--79952327 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
79952187 GACAAGATTG
* * * * * *
79952197 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
79952255 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
79952314 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79952328 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:79959512 original size:40 final size:39
Alignment explanation
Indices: 79959467--79959596 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
79959457 CGGAATATAA
79959467 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
79959507 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
79959547 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
79959587 CCGGATATAA
1 CCGGATATAA
79959597 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79959611 original size:40 final size:40
Alignment explanation
Indices: 79959483--79959634 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
79959473 ATAACCATGT
* * *
79959483 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
79959523 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
79959563 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
79959603 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
79959635 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:79959617 original size:80 final size:80
Alignment explanation
Indices: 79959483--79959632 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
79959473 ATAACCATGT
*
79959483 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
79959547 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
79959563 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
79959626 CCCGGAT
64 CCCGGAT
79959633 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:79964540 original size:23 final size:24
Alignment explanation
Indices: 79964500--79964544 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
79964490 CAAGTCCTAC
*
79964500 CCATCCAGCCTCTACACTCCATCT
1 CCATCCAACCTCTACACTCCATCT
79964524 CCATCCAACC-CTACACTCCAT
1 CCATCCAACCTCTACACTCCAT
79964545 GTAGGGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.24, C:0.51, G:0.02, T:0.22
Consensus pattern (24 bp):
CCATCCAACCTCTACACTCCATCT
Found at i:79964958 original size:27 final size:27
Alignment explanation
Indices: 79964800--79964957 Score: 237
Period size: 27 Copynumber: 5.9 Consensus size: 27
79964790 TATATACTGT
* *
79964800 ACATAGGGGCAAAACAGTCATCTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
79964827 ACATAAGGGCAAAACAGTCATTTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
79964854 ACATAAGGGCAAAACAGTCATTTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
* * *
79964881 ACATAAGGACAAAATAATCATTTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
*
79964908 ACATAAGGGCAAAATAGTCA-TTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
*
79964934 ATATATAGGGCAAAACAGTCATTT
1 ACATA-AGGGCAAAACAGTCATTT
79964958 AATTAATTAG
Statistics
Matches: 120, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
26 10 0.08
27 108 0.90
28 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (27 bp):
ACATAAGGGCAAAACAGTCATTTTACC
Found at i:79967202 original size:7 final size:7
Alignment explanation
Indices: 79967192--79967227 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
79967182 GAGGAGAGAA
79967192 TGATGAG
1 TGATGAG
79967199 TGATGAG
1 TGATGAG
*
79967206 TGATGAA
1 TGATGAG
79967213 TGATGAG
1 TGATGAG
*
79967220 GGATGAG
1 TGATGAG
79967227 T
1 T
79967228 AGAAATGTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.42, T:0.28
Consensus pattern (7 bp):
TGATGAG
Found at i:79970376 original size:48 final size:48
Alignment explanation
Indices: 79970319--79970590 Score: 302
Period size: 48 Copynumber: 5.7 Consensus size: 48
79970309 TGATATGTGT
*
79970319 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGA
* * *** * *
79970367 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA-TATGTGT
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC-CACATTATGAGA
* * *
79970415 GCTAGTGTAAGATCATGTTTGGGACATGGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGA
* * *
79970463 GCTAGTGTAAGACCATGTCTGGGACATTGTATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGA
* * * *
79970511 GCCAGTGTAAGTCAATGTCTAGGACATGCCATC-G--ACATTGA-GACGA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATT-ATGA-GA
79970557 GTGCTAGTGTAAGACCATGTCTAGGACATGGCAT
1 --GCTAGTGTAAGACCATGTCTAGGACATGGCAT
79970591 AGGCATTTTA
Statistics
Matches: 187, Mismatches: 31, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
45 7 0.04
46 3 0.02
47 2 0.01
48 174 0.93
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGA
Found at i:79970584 original size:144 final size:144
Alignment explanation
Indices: 79970319--79970590 Score: 400
Period size: 144 Copynumber: 1.9 Consensus size: 144
79970309 TGATATGTGT
*
79970319 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACAATG
* * * * * * * * * *
79970384 TCTGGGACATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGATCATGTTTGGGACATGGCATCG
66 TCTAGGACATGCCATCGACATTGAGACGAGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCG
79970449 GCCACATTATGAGA
131 GCCACATTATGAGA
* * * * *
79970463 GCTAGTGTAAGACCATGTCTGGGACATTGTATCGGCCACATTATGAGAGCCAGTGTAAGTCAATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACAATG
79970528 TCTAGGACATGCCATCGACATTGAGACGAGTGCTAGTGTAAGACCATGTCTAGGACATGGCAT
66 TCTAGGACATGCCATCGACATTGAGACGAGTGCTAGTGTAAGACCATGTCTAGGACATGGCAT
79970591 AGGCATTTTA
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
144 112 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (144 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACAATG
TCTAGGACATGCCATCGACATTGAGACGAGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCG
GCCACATTATGAGA
Found at i:79972445 original size:17 final size:18
Alignment explanation
Indices: 79972423--79972456 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79972413 AGTCGAATTG
79972423 AAATTGCG-AAATTAAAT
1 AAATTGCGAAAATTAAAT
*
79972440 AAATTGTGAAAATTAAA
1 AAATTGCGAAAATTAAA
79972457 ATAGAGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.03, G:0.12, T:0.29
Consensus pattern (18 bp):
AAATTGCGAAAATTAAAT
Found at i:79973194 original size:10 final size:10
Alignment explanation
Indices: 79973175--79973224 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
79973165 TTAAATCCTA
79973175 AAAGATAAAT
1 AAAGATAAAT
79973185 ACAA-ATAAAT
1 A-AAGATAAAT
*
79973195 AAAGATAATT
1 AAAGATAAAT
79973205 AAAGATAAAT
1 AAAGATAAAT
79973215 GAAA-ATAAAT
1 -AAAGATAAAT
79973225 CCTAAATCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:79982187 original size:43 final size:42
Alignment explanation
Indices: 79982088--79982193 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 42
79982078 TAAGACCATG
* * * **
79982088 TCTGGGACATTGGCATCGTATATGATTTCGTGTAAGACCTTG
1 TCTGGGACATTGGCATTGTATATGATTACATGTAAGACCTCA
* * *
79982130 TCTGGGATACTGGCATTGATATTTGATTACATGTAAGACCTCA
1 TCTGGGACATTGGCATTG-TATATGATTACATGTAAGACCTCA
*
79982173 TCTGGGACGTTGGCATTGTAT
1 TCTGGGACATTGGCATTGTAT
79982194 GAGTTTTCGA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 18 0.35
43 34 0.65
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (42 bp):
TCTGGGACATTGGCATTGTATATGATTACATGTAAGACCTCA
Found at i:79990514 original size:93 final size:93
Alignment explanation
Indices: 79990402--79990572 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
79990392 GCCCATAAGT
* *
79990402 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
79990466 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
79990495 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79990560 CGAGTTCGGATGC
66 CGAGTTCGGATGC
79990573 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79990569 original size:46 final size:46
Alignment explanation
Indices: 79990394--79990574 Score: 217
Period size: 46 Copynumber: 3.9 Consensus size: 46
79990384 TGTAACCCGC
* *
79990394 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCAT
* *
79990440 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
79990490 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
79990533 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
79990575 AACCATCCTA
Statistics
Matches: 115, Mismatches: 12, Indels: 16
0.80 0.08 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.03
46 69 0.60
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:79992997 original size:30 final size:30
Alignment explanation
Indices: 79992953--79993041 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
79992943 CAAAGATAAC
79992953 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
79992982 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
79993012 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
79993042 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:79993001 original size:15 final size:15
Alignment explanation
Indices: 79992953--79993032 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
79992943 CAAAGATAAC
*
79992953 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
79992967 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
79992982 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
79992997 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
79993012 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
79993027 AAGAAA
1 AAGAAA
79993033 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:79993041 original size:15 final size:15
Alignment explanation
Indices: 79992964--79993041 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
79992954 AGAAAACCGA
79992964 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
79992979 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
79992993 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
79993008 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
79993024 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
79993039 ATA
1 ATA
79993042 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80002019 original size:48 final size:48
Alignment explanation
Indices: 80001798--80002101 Score: 185
Period size: 49 Copynumber: 6.3 Consensus size: 48
80001788 ATGTTGACGC
* * * * *
80001798 CATGTCCCAGACATGGTCTTACACTGGCTAGCACA--TCAAAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * * **
80001845 CCATGTCCCAGAAAGGTCTTACAAT-GACTT-TCATATATCAAGGTTGATG
1 -CATGTCCCAGACATGTCTTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * * * * * *
80001894 CCGTGTCTCAGATAGGTCTTACACTAGCTT-TCATCTATC-GGTGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTGT-ATATCTCAAG-GCCGATG
* **
80001943 CCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTTGAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * * * *
80001992 CATGTCCCAGACATGTCTTATAGTAGC-TCT-CATCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * *
80002038 TATGTCCTAGACATGTCTTACACTGGCTTGTATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
80002086 CATGTCCC-GTACATGT
1 CATGTCCCAG-ACATGT
80002102 TTTGCACTGG
Statistics
Matches: 200, Mismatches: 45, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
46 34 0.17
47 18 0.09
48 62 0.31
49 83 0.41
50 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:80002115 original size:94 final size:95
Alignment explanation
Indices: 80001798--80002118 Score: 276
Period size: 94 Copynumber: 3.3 Consensus size: 95
80001788 ATGTTGACGC
* ** * *
80001798 CATGTCCCAGACATGGTCTTACACTGGCTAGCA-CATCAAAGCCGATGCCATGTCCCAGA-AAGG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATC-TCAATGTCGATGCCATGTCCCAGACAA-G
* * **
80001861 TCTTACAAT-GACTT-TCATATATCAAGGTTGATG
63 TCTTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * * * **
80001894 CCGTGTCTCAGATAGGTCTTACACTAGCTTTCATCTATCGGTGTCGATGCCATGTCCCAGACAAG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTCATC--TCAATGTCGATGCCATGTCCCAGACAAG
**
80001959 TCTTACACTAGCTTGTATATCTTGAGGCCGATG
63 TCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * * *
80001992 CATGTCCCAGACATGTCTTATAGTAGCTCTCATCTCAATGTCGATG-TATGTCCTAGACATGTCT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAGACAAGTCT
*
80002056 TACACTGGCTTGTATATCTCAAGGCCGATG
66 TACACTAGCTTGTATATCTCAAGGCCGATG
* * *
80002086 CATGTCCC-GTACATGTTTTGCACTGGCTCTCAT
1 CATGTCCCAG-ACATGTCTTACACTAGCTCTCAT
80002119 AATGTGGCCG
Statistics
Matches: 181, Mismatches: 37, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
93 1 0.01
94 68 0.38
95 10 0.06
96 15 0.08
97 38 0.21
98 45 0.25
99 4 0.02
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.31
Consensus pattern (95 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAGACAAGTCT
TACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:80002131 original size:94 final size:93
Alignment explanation
Indices: 80001798--80002154 Score: 258
Period size: 94 Copynumber: 3.7 Consensus size: 93
80001788 ATGTTGACGC
* ** * * * * *
80001798 CATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGCCGATGCCATGTCCCAGAAAGGTC
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCAC-TCAATGTCGATG-CATGTCCTAGACATGTC
* * **
80001863 TTACAAT-GACTT-TCATATATCAAGGTTGATG
63 TTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * * * ** * *
80001894 CCGTGTCTCAGATAGGTCTTACACTAGCTTTCATCTATCGGTGTCGATGCCATGTCCCAGACAAG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTCA-C--TCAATGTCGATG-CATGTCCTAGACATG
**
80001959 TCTTACACTAGCTTGTATATCTTGAGGCCGATG
61 TCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * *
80001992 CATGTCCCAGACATGTCTTATAGTAGCTCTCATCTCAATGTCGATGTATGTCCTAGACATGTCTT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCA-CTCAATGTCGATGCATGTCCTAGACATGTCTT
*
80002057 ACACTGGCTTGTATATCTCAAGGCCGATG
65 ACACTAGCTTGTATATCTCAAGGCCGATG
* * *
80002086 CATGTCCC-GTACATGTTTTGCACTGGCTCTCA-T-AATGTGGCCGATGCATGTCTCT-GACATG
1 CATGTCCCAG-ACATGTCTTACACTAGCTCTCACTCAATGT---CGATGCATGTC-CTAGACATG
80002147 TCTTACAC
61 TCTTACAC
80002155 AAGCACACGT
Statistics
Matches: 211, Mismatches: 40, Indels: 21
0.78 0.15 0.08
Matches are distributed among these distances:
91 5 0.02
92 1 0.00
93 1 0.00
94 91 0.43
95 12 0.06
96 15 0.07
97 38 0.18
98 46 0.22
99 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCACTCAATGTCGATGCATGTCCTAGACATGTCTTA
CACTAGCTTGTATATCTCAAGGCCGATG
Found at i:80011573 original size:41 final size:41
Alignment explanation
Indices: 80011516--80011665 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
80011506 TCAGGGTTTA
80011516 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
80011557 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * * *
80011598 AA-CTGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
80011638 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
80011666 TGAGTCAGGC
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:80019700 original size:41 final size:41
Alignment explanation
Indices: 80019597--80019701 Score: 122
Period size: 40 Copynumber: 2.6 Consensus size: 41
80019587 TCGGGGTTTA
* * *
80019597 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCCTTCAAGCCAATGTCAT
* * * * **
80019638 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCCTTCAAGCCAATGTCAT
80019678 AATCCGAGCTTGGTCTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGC
80019702 TTTTTGAGTC
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
40 31 0.62
41 19 0.38
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCCTTCAAGCCAATGTCAT
Found at i:80026643 original size:2 final size:2
Alignment explanation
Indices: 80026636--80026660 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80026626 TATTTCAGCC
80026636 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
80026661 TAGCTGATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80026995 original size:66 final size:67
Alignment explanation
Indices: 80026866--80026995 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
80026856 GGGATGTATC
*
80026866 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
80026931 AGGACA
62 AGGACA
* *
80026937 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
80026996 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:80034325 original size:68 final size:68
Alignment explanation
Indices: 80034242--80034399 Score: 307
Period size: 68 Copynumber: 2.3 Consensus size: 68
80034232 ATACTATATA
80034242 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
80034307 AAT
66 AAT
80034310 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
80034375 AAT
66 AAT
*
80034378 GTAGCTAGGTCGCATGTGTGAT
1 GTAGCTAGGTCACATGTGTGAT
80034400 TCCAAGTGAA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 89 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (68 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
AAT
Found at i:80047859 original size:25 final size:25
Alignment explanation
Indices: 80047831--80047883 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
80047821 TCTTTGATGT
80047831 TTGCTTAGAAATATGTGAAAAAGGG
1 TTGCTTAGAAATATGTGAAAAAGGG
80047856 TTGCTTAGAAATATGTGAAAAAGGG
1 TTGCTTAGAAATATGTGAAAAAGGG
80047881 TTG
1 TTG
80047884 TGAAGCTTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.04, G:0.28, T:0.30
Consensus pattern (25 bp):
TTGCTTAGAAATATGTGAAAAAGGG
Found at i:80048769 original size:29 final size:29
Alignment explanation
Indices: 80048736--80048794 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
80048726 GAATTAGAAG
*
80048736 TCTGAAGTTTTCTGGCACTCGCTAGTTAT
1 TCTGAAGTTTTCTGGCACTCACTAGTTAT
* *
80048765 TCTGAAGTTTTCTGGGACTCACTGGTTAT
1 TCTGAAGTTTTCTGGCACTCACTAGTTAT
80048794 T
1 T
80048795 ACAGATGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (29 bp):
TCTGAAGTTTTCTGGCACTCACTAGTTAT
Found at i:80052191 original size:42 final size:42
Alignment explanation
Indices: 80052076--80052247 Score: 138
Period size: 43 Copynumber: 4.0 Consensus size: 42
80052066 CATAGGATTT
* * *
80052076 TCATATGTGATTTCATGTAAGACCACAT-T-TGGGACGTTGGTA
1 TCATATTTGATTTCATGTAAGACC-C-TGTCTGGGACATTGGCA
*
80052118 TCA-ATTTGAGATTT-ATGTGTAAGACCATGTCTGGGACATTGGCA
1 TCATATTT--GATTTCA--TGTAAGACCCTGTCTGGGACATTGGCA
* * *
80052162 TCATATATGATTTCATGTAAGACCCTGTCTGGGATAATGGCA
1 TCATATTTGATTTCATGTAAGACCCTGTCTGGGACATTGGCA
* * * *
80052204 TCGATATTTGATTACACGTAAGA-CCTCGTCTAGGACATTTGCA
1 TC-ATATTTGATTTCATGTAAGACCCT-GTCTGGGACATTGGCA
80052247 T
1 T
80052248 TGTATGCATT
Statistics
Matches: 105, Mismatches: 15, Indels: 19
0.76 0.11 0.14
Matches are distributed among these distances:
41 3 0.03
42 34 0.32
43 41 0.39
44 24 0.23
45 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34
Consensus pattern (42 bp):
TCATATTTGATTTCATGTAAGACCCTGTCTGGGACATTGGCA
Found at i:80061677 original size:47 final size:47
Alignment explanation
Indices: 80061619--80061770 Score: 158
Period size: 47 Copynumber: 3.4 Consensus size: 47
80061609 GCGAACGTCT
80061619 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
* * * *
80061666 GAACTCGTTGAGTCCGAGTTC-ACTT-ATG-GATGTGAAC---G--TCC
1 GAACTCGTTGAGT-TGAGTCCGAGTTCGTGAGATGT-AACTAGGCATCC
* * * *
80061707 GAACTCGCTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGCCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
80061754 GAACTCGTTGAGTTGAG
1 GAACTCGTTGAGTTGAG
80061771 CCTGATTTCA
Statistics
Matches: 82, Mismatches: 13, Indels: 20
0.71 0.11 0.17
Matches are distributed among these distances:
40 5 0.06
41 18 0.22
42 5 0.06
43 5 0.06
45 5 0.06
46 5 0.06
47 34 0.41
48 5 0.06
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
Found at i:80061812 original size:93 final size:92
Alignment explanation
Indices: 80061569--80061826 Score: 371
Period size: 88 Copynumber: 2.8 Consensus size: 92
80061559 GATATTTGGG
* * * *
80061569 CATCCGAACTCATTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTTG
1 CATCCGAACTCGTTGAGTTGAGCCGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAGTTG
* *
80061634 AGTCCGAGTTCGTGAGATGTAACTAGG
66 AGTCCGAGTTCGTGAAATGTAACTAGC
*
80061661 CATCCGAACTCGTTGAG-T---CCGAGTTCACTTATGGATGTGAACGTCCGAACTCGCTGAGTTG
1 CATCCGAACTCGTTGAGTTGAGCCGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAGTTG
80061722 AGTCCGAGTTCGTGAAATGTAACTAGC
66 AGTCCGAGTTCGTGAAATGTAACTAGC
* * * * *
80061749 CATCTGAACTCGTTGAGTTGAGCCTGATTTCACTTATAGATGTGAACGCCCGAGCTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGCC-GAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAGTT
80061814 GAGTCCGAGTTCG
65 GAGTCCGAGTTCG
80061827 CTTATGGGCG
Statistics
Matches: 148, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
88 80 0.54
89 1 0.01
91 1 0.01
92 18 0.12
93 48 0.32
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (92 bp):
CATCCGAACTCGTTGAGTTGAGCCGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAAATGTAACTAGC
Found at i:80061831 original size:46 final size:46
Alignment explanation
Indices: 80061572--80061831 Score: 181
Period size: 46 Copynumber: 5.7 Consensus size: 46
80061562 ATTTGGGCAT
* * * *
80061572 CCGAACTCATTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAACGC
* * *
80061617 CTGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAGATGT-AACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAAC---GC
* *
80061662 ATCCGAACTC-----GTTGAGTCCGAGTTCACTTATGGATGTGAACGT
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAACGC
* * *
80061705 CCGAACTCGCTGAGTTGAGTCCGAGTTC-GTGA-A-ATGT-AACTAGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAAC--GC
*
80061749 CATCTGAACTCGTTGAGTTGAG-CCTGATTTCACTTATAGATGTGAACGC
1 C--C-GAACTCGTTGAGTTGAGTCC-GAGTTCACTTATAGATGTGAACGC
* *
80061798 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
80061832 GGGCGAGTTA
Statistics
Matches: 166, Mismatches: 23, Indels: 51
0.69 0.10 0.21
Matches are distributed among these distances:
41 8 0.05
42 20 0.12
43 9 0.05
44 6 0.04
45 26 0.16
46 53 0.32
47 31 0.19
48 2 0.01
49 4 0.02
50 4 0.02
51 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAACGC
Found at i:80067644 original size:46 final size:46
Alignment explanation
Indices: 80067591--80067760 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
80067581 AGAATTTGGG
*
80067591 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * *
80067637 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
*
80067684 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * *
80067730 AATCCGAACTCGTTGAGTTGATTCCAAGTTC
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC
80067761 GTGAAATGTA
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 59 0.57
47 32 0.31
48 2 0.02
50 4 0.04
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:80067700 original size:93 final size:93
Alignment explanation
Indices: 80067589--80067815 Score: 373
Period size: 93 Copynumber: 2.4 Consensus size: 93
80067579 TCAGAATTTG
* *
80067589 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAATCCGAACTCGTTGAG
* *
80067654 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAAATGTAACTA
*
80067682 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAATCCGAACTCGTTGAG
*
80067747 TTGATTCCAAGTTCGTGAAATGTAACTA
66 TTGAGTCCAAGTTCGTGAAATGTAACTA
* * *
80067775 GGCATCTGAACTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80067816 GCGAGTTACA
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 124 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAATCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAAATGTAACTA
Found at i:80067704 original size:47 final size:47
Alignment explanation
Indices: 80067637--80067808 Score: 192
Period size: 47 Copynumber: 3.7 Consensus size: 47
80067627 TGGATGCGAA
*
80067637 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGG
* * * * *
80067684 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA--A--
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGG
* *
80067731 -ATCCGAACTCGTTGAGTTGATTCCAAGTTCGTGAAATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGG
*
80067777 CATCTGAACTCGTTGAGTTGAGTCCAAGTTCG
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCG
80067809 CTTATGGGCG
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 27 0.26
47 59 0.57
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (47 bp):
CATCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGG
Found at i:80072332 original size:40 final size:40
Alignment explanation
Indices: 80072288--80072462 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
80072278 GCTTGATTGT
* * * * *
80072288 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
80072328 CTTCGGGAATTAGCCCGGATTTAATAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
80072368 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
80072408 CTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAAC-TCGCACAAATGC
80072449 CTTCGGGACTTAGC
1 CTTCGGGACTTAGC
80072463 TCGGATACCA
Statistics
Matches: 114, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 91 0.80
41 23 0.20
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:80078134 original size:49 final size:49
Alignment explanation
Indices: 80078056--80078301 Score: 285
Period size: 49 Copynumber: 5.0 Consensus size: 49
80078046 GTAGCCAAAG
* * * *
80078056 TTATTTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAA
* ** *
80078105 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACGTACGTGACCTAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC-AA
** * * *
80078155 CCATTTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA
* * * * *
80078205 GTTATCGGGTACGCATAGTAGCCTGCACTTATTACTACACATGAGACCAA
1 -TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAA
* *
80078255 TTATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
80078302 TCACAATAGA
Statistics
Matches: 160, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 79 0.49
50 44 0.28
51 37 0.23
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (49 bp):
TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAA
Found at i:80078192 original size:26 final size:26
Alignment explanation
Indices: 80078113--80078193 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
80078103 AATTATCCGG
80078113 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACGTAGTAGCCTGCACTTAGTAC
* *
80078139 T--ACGTACGT-GACCT-AACCATTTG-A-
1 TACACGTA-GTAG-CCTGCA-C-TTAGTAC
80078163 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACGTAGTAGCCTGCACTTAGTAC
80078189 TACAC
1 TACAC
80078194 ATGTGATCGA
Statistics
Matches: 41, Mismatches: 4, Indels: 20
0.63 0.06 0.31
Matches are distributed among these distances:
24 11 0.27
25 14 0.34
26 16 0.39
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
TACACGTAGTAGCCTGCACTTAGTAC
Found at i:80079625 original size:48 final size:48
Alignment explanation
Indices: 80079554--80079649 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
80079544 TTACATTTGG
80079554 GTCCTTCGGTAGTCTCCAGTTTTCATTCACCAGTTTGCTAATAGGTAA
1 GTCCTTCGGTAGTCTCCAGTTTTCATTCACCAGTTTGCTAATAGGTAA
80079602 GTCCTTCGGTAGTCTCCAGTTTTCATTCACCAGTTTGCTAATAGGTAA
1 GTCCTTCGGTAGTCTCCAGTTTTCATTCACCAGTTTGCTAATAGGTAA
80079650 TCTCTTATTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (48 bp):
GTCCTTCGGTAGTCTCCAGTTTTCATTCACCAGTTTGCTAATAGGTAA
Found at i:80082610 original size:27 final size:28
Alignment explanation
Indices: 80082554--80082621 Score: 120
Period size: 27 Copynumber: 2.5 Consensus size: 28
80082544 AAATTTGTAC
80082554 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
80082582 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
80082609 AGCACTAAGTGTG
1 AGCACTAAGTGTG
80082622 TGGACTCACT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:80082634 original size:27 final size:27
Alignment explanation
Indices: 80082554--80082635 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
80082544 AAATTTGTAC
* *
80082554 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
80082582 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
80082609 AGCACTAAGTGTGTG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
80082636 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:80091609 original size:40 final size:40
Alignment explanation
Indices: 80091501--80091610 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
80091491 ATTGAATGAT
* * * * *
80091501 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
80091541 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
80091581 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
80091611 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:80091625 original size:40 final size:39
Alignment explanation
Indices: 80091501--80091650 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
80091491 ATTGAATGAT
* * * * * * *
80091501 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
80091541 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
80091581 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
80091621 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
80091651 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:80103276 original size:27 final size:28
Alignment explanation
Indices: 80103220--80103289 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
80103210 AAATTTGTAC
80103220 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
80103248 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
80103275 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80103290 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:80103300 original size:27 final size:27
Alignment explanation
Indices: 80103220--80103301 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
80103210 AAATTTGTAC
* *
80103220 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
80103248 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
80103275 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
80103302 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:80110767 original size:24 final size:24
Alignment explanation
Indices: 80110735--80110797 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
80110725 AATCTCAAAT
80110735 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
80110759 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80110783 GCACTGTGTGTGCGA
1 GCACTATGTGTGCGA
80110798 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.19, C:0.17, G:0.29, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:80118627 original size:24 final size:24
Alignment explanation
Indices: 80118595--80118657 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
80118585 AATCTCAAAT
80118595 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
80118619 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80118643 GCACTGTGTGTGCGA
1 GCACTATGTGTGCGA
80118658 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.19, C:0.17, G:0.29, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:80121444 original size:40 final size:41
Alignment explanation
Indices: 80121384--80121510 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 41
80121374 TGGAATACAA
*
80121384 CCGGATA-TAACCACGT-GCACGAATGCCTTCAGGTCTTAGC
1 CCGGATAGTAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* *
80121424 CCGGATAG-AACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGTAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* *
80121464 CCGGAT-GTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATAGTAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
80121504 CCGGATA
1 CCGGATA
80121511 TAATTTCCAG
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (41 bp):
CCGGATAGTAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:80124951 original size:40 final size:39
Alignment explanation
Indices: 80124884--80124979 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 39
80124874 CTATCTCTGT
80124884 ATCGCACACTTAGTGCCTCATACAGCCAAAGCTATACT-A
1 ATCGCACACTTAGTG-CTCATACAGCCAAAGCTATACTGA
* * *
80124923 TTTCGCACACTTAGTGCT-ATTTATAGCCAAAGCTATTCTGA
1 -ATCGCACACTTAGTGCTCA--TACAGCCAAAGCTATACTGA
80124964 ATCGCACACTTAGTGC
1 ATCGCACACTTAGTGC
80124980 CAAATGTAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 45 0.92
41 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (39 bp):
ATCGCACACTTAGTGCTCATACAGCCAAAGCTATACTGA
Found at i:80129131 original size:34 final size:33
Alignment explanation
Indices: 80129093--80129160 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 33
80129083 GTCGCAATAA
*
80129093 CAATGTGGGCCTTAGCCCAATACAGTAATAGTAT
1 CAATGTAGGCCTTAGCCCAATACAGT-ATAGTAT
* * *
80129127 CAATGTAGGCCTTAGCCTATTTCAGTATAGTAT
1 CAATGTAGGCCTTAGCCCAATACAGTATAGTAT
80129160 C
1 C
80129161 CAAAATGCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 8 0.27
34 22 0.73
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (33 bp):
CAATGTAGGCCTTAGCCCAATACAGTATAGTAT
Found at i:80142148 original size:40 final size:40
Alignment explanation
Indices: 80142087--80142162 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
80142077 CGGTACTTTA
*
80142087 TGGTGTGTAGGGTTGGATGGGTCGATTTTATCCCCATATT
1 TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCATATT
*
80142127 TGGTGTGTAGGGATGGGTGGGTCGATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCA
80142163 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.14, C:0.13, G:0.36, T:0.37
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCATATT
Found at i:80142972 original size:15 final size:15
Alignment explanation
Indices: 80142954--80142994 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
80142944 CTCCAATCAC
80142954 AAAAAAAAAAAACAA
1 AAAAAAAAAAAACAA
*
80142969 AAAAAACAAAAACAA
1 AAAAAAAAAAAACAA
80142984 AAACAAAAAAA
1 AAA-AAAAAAA
80142995 CCAATCGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAACAA
Found at i:80142979 original size:21 final size:21
Alignment explanation
Indices: 80142955--80142994 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
80142945 TCCAATCACA
80142955 AAAAAAAAAAACAAAAAAAAC
1 AAAAAAAAAAACAAAAAAAAC
*
80142976 AAAAACAAAAACAAAAAAA
1 AAAAAAAAAAACAAAAAAA
80142995 CCAATCGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAAACAAAAAAAAC
Found at i:80146260 original size:2 final size:2
Alignment explanation
Indices: 80146253--80146288 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
80146243 TAGAGGTAAG
80146253 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80146289 GGAAGGAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80147079 original size:29 final size:30
Alignment explanation
Indices: 80147047--80147109 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
80147037 TAATAAAAAA
80147047 TAAAAAAAT-TAAAAATTCTAAAGAATATT-
1 TAAAAAAATGTAAAAATTCTAAA-AATATTC
* *
80147076 T-AAAAAATGTTAAAATTTTAAAAATATTC
1 TAAAAAAATGTAAAAATTCTAAAAATATTC
80147105 TAAAA
1 TAAAA
80147110 TAATAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 13 0.45
29 13 0.45
30 3 0.10
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (30 bp):
TAAAAAAATGTAAAAATTCTAAAAATATTC
Done.