Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 265 of 335
Found at i:80147101 original size:28 final size:29
Alignment explanation
Indices: 80147049--80147109 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
80147039 ATAAAAAATA
80147049 AAAAAATTAAAAATTCTAAAGAATATT-T
1 AAAAAATTAAAAATTCTAAAGAATATTCT
* *
80147077 AAAAAATGTTAAAATTTTAAA-AATATTCT
1 AAAAAAT-TAAAAATTCTAAAGAATATTCT
80147106 AAAA
1 AAAA
80147110 TAATAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (29 bp):
AAAAAATTAAAAATTCTAAAGAATATTCT
Found at i:80147958 original size:22 final size:24
Alignment explanation
Indices: 80147933--80147976 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
80147923 AAATAAGGAG
*
80147933 AAAAGAAC-AAAA-AAATAACATT
1 AAAACAACAAAAACAAATAACATT
80147955 AAAACAACAAAAACAAATAACA
1 AAAACAACAAAAACAAATAACA
80147977 GATTTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 4 0.21
24 8 0.42
ACGTcount: A:0.75, C:0.14, G:0.02, T:0.09
Consensus pattern (24 bp):
AAAACAACAAAAACAAATAACATT
Found at i:80149356 original size:19 final size:20
Alignment explanation
Indices: 80149321--80149364 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
80149311 AGGGACTAAA
80149321 ATGAAAAGTTATAAAATTTG
1 ATGAAAAGTTATAAAATTTG
* *
80149341 ATGAAAA-TTATGAAATTTT
1 ATGAAAAGTTATAAAATTTG
80149360 ATGAA
1 ATGAA
80149365 TACATGTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGAAAAGTTATAAAATTTG
Found at i:80150818 original size:22 final size:22
Alignment explanation
Indices: 80150760--80150809 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
80150750 TATGCCATGA
*
80150760 TGAATGATGGAATTGTCTATTT
1 TGAATGATGAAATTGTCTATTT
80150782 TGAATGATGAAATTGTCTATTT
1 TGAATGATGAAATTGTCTATTT
80150804 TGAATG
1 TGAATG
80150810 TTTGGATTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.44
Consensus pattern (22 bp):
TGAATGATGAAATTGTCTATTT
Found at i:80162511 original size:46 final size:47
Alignment explanation
Indices: 80162371--80162676 Score: 249
Period size: 46 Copynumber: 6.5 Consensus size: 47
80162361 TTTGTGCGCT
* *
80162371 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GATGTAGAGCC
* * * *
80162417 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACG-AGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCC
*
80162465 AGTGTAAGACATGTATGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
* * * *
80162511 AGTGTAAGACATGTCTAGAACATGCATCGG-CTACAAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCC
* ** *
80162555 AGTGTGAGACCATGTCTGGGACATGGCATCGG-GACGAATATGTGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-AGATGT-AGAGCC
* * * *
80162605 AGTGTAAGACCATGTCTGGGACATGGAATC-GACTTGACATGT-GAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCC
80162652 AGTGTAAGACTATGTCTGGGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
80162677 GGATCGGCAT
Statistics
Matches: 217, Mismatches: 28, Indels: 30
0.79 0.10 0.11
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 75 0.35
47 55 0.25
48 24 0.11
49 7 0.03
50 31 0.14
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:80162667 original size:47 final size:47
Alignment explanation
Indices: 80162371--80162682 Score: 232
Period size: 47 Copynumber: 6.7 Consensus size: 47
80162361 TTTGTGCGCT
* * * *
80162371 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAT-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA-CATGTGAGCC
* * * * *
80162417 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGACATGTGAGCC
* * * * *
80162465 AGTGTAAGA-CATGTATGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGACATGTGAGCC
* * * * * *
80162511 AGTGTAAGA-CATGTCTAGAACAT-GCATCGGC-T-ACAAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGACATG-TGAGCC
* *
80162555 AGTGTGAGACCATGTCTGGGACATGGCATCGGGAC--GAATATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC--GACTTG-ACATGT--GAGCC
*
80162605 AGTGTAAGACCATGTCTGGGACATGGAATCGACTTGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGACATGTGAGCC
* *
80162652 AGTGTAAGACTATGTCTGGGACATGGGATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
80162683 GCATCATACC
Statistics
Matches: 216, Mismatches: 34, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
43 3 0.01
44 11 0.05
45 14 0.06
46 54 0.25
47 64 0.30
48 29 0.13
49 9 0.04
50 32 0.15
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGACATGTGAGCC
Found at i:80166434 original size:28 final size:29
Alignment explanation
Indices: 80166399--80166453 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
80166389 CACGGGCTGA
*
80166399 GACACGGGCGTGT-CGAGGCCGTGTGAGG
1 GACACGGGCGTGTGCCAGGCCGTGTGAGG
80166427 GACACGGGCGTGTGCCAGGCCGTGTGA
1 GACACGGGCGTGTGCCAGGCCGTGTGA
80166454 AATCCCCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 13 0.52
29 12 0.48
ACGTcount: A:0.15, C:0.24, G:0.47, T:0.15
Consensus pattern (29 bp):
GACACGGGCGTGTGCCAGGCCGTGTGAGG
Found at i:80177618 original size:20 final size:20
Alignment explanation
Indices: 80177593--80177632 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
80177583 AAGTATATAG
80177593 TGAACTATTACAAAACACAT
1 TGAACTATTACAAAACACAT
80177613 TGAACTATTACAAAACACAT
1 TGAACTATTACAAAACACAT
80177633 AAACAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.20, G:0.05, T:0.25
Consensus pattern (20 bp):
TGAACTATTACAAAACACAT
Found at i:80179641 original size:29 final size:29
Alignment explanation
Indices: 80179582--80179665 Score: 125
Period size: 29 Copynumber: 2.9 Consensus size: 29
80179572 ACATACTTGT
80179582 TATGGCCCATTAGGCCC-AATCACATTTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
* *
80179610 TATGACCCATTAGGCCCAAATCATATTTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
* *
80179639 TATGGCCTATCAGGCCCAAATCACATT
1 TATGGCCCATTAGGCCCAAATCACATT
80179666 ATAGTCATGC
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 16 0.33
29 33 0.67
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTTA
Found at i:80185652 original size:24 final size:23
Alignment explanation
Indices: 80185582--80185657 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
80185572 AAGCTCTATT
80185582 GAGCTGAAACAGTAAGCT-TTGAC
1 GAGCTGAAACAGTAAGCTCTT-AC
* * * *
80185605 AAGCTGAATCAGTAATCTCATAC
1 GAGCTGAAACAGTAAGCTCTTAC
*
80185628 GAGTTGAGAACAGTAAGCTCTTAC
1 GAGCTGA-AACAGTAAGCTCTTAC
80185652 GAGCTG
1 GAGCTG
80185658 GTATATCAGT
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
23 22 0.54
24 19 0.46
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTTAC
Found at i:80191089 original size:30 final size:30
Alignment explanation
Indices: 80191032--80191089 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
80191022 TTTTCGAGCA
**
80191032 TAGGGGCAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
80191062 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
80191090 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:80191540 original size:47 final size:45
Alignment explanation
Indices: 80191430--80191784 Score: 219
Period size: 47 Copynumber: 7.6 Consensus size: 45
80191420 TGGTTTGTGC
* *
80191430 GCCAGTGTAAGA-CATGTCTGGGACATGCCTCGGCCA-CATTATGAGA-
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCAG-CATC--TA-GAGAG
* *
80191476 GCCGGTGTAAGACCATGTCTGGGACATGGCATCAGTATCTAGACGAGG
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATCTAGA-GA-G
* * *
80191524 GCTAGTGTAAGA-CATGTTTGGGACATGCATCAGCCATACTATGATA-
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCAG-CAT-CTA-GAGAG
* *
80191570 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCA-CAGAGATGAG
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATC-TAGA-GAG
* * * *
80191617 TGCCAGTGTAAGA-CATATCTGGGACATGCATCAGCCTCGACCGAGATA
1 -GCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATCTA--GAGA-G
* * * * * *
80191665 GCCAGTGTAAGA-CGTGTCTGGGACACGTATCGGC-T-AAGAGTTG
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATCTAGAG-AG
* * *
80191708 TGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCACGCGTATATGAG
1 -GCCAGTGTAAGACCATGTCTGGGACATGCATCAGCA-TC-TAGA-GAG
*
80191756 AGCCTGTGTAAGACCATGTCTGGGACATG
1 -GCCAGTGTAAGACCATGTCTGGGACATG
80191785 GCATTCGCAA
Statistics
Matches: 244, Mismatches: 38, Indels: 51
0.73 0.11 0.15
Matches are distributed among these distances:
43 3 0.01
44 29 0.12
45 6 0.02
46 46 0.19
47 88 0.36
48 54 0.22
49 18 0.07
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATCTAGAGAG
Found at i:80191595 original size:94 final size:91
Alignment explanation
Indices: 80191433--80191788 Score: 350
Period size: 94 Copynumber: 3.8 Consensus size: 91
80191423 TTTGTGCGCC
* * * * *
80191433 AGTGTAAGACATGTCTGGGACATGCCTCGGCCACATTATGAGAGCCGGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
80191498 GACATGGCATCAGTATCTAGACGAGGGCT
66 GACATGGCATCAG-A-CTAGA-GAGGGCT
* * *
80191527 AGTGTAAGACATGTTTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
*
80191592 GACATGGCATCAGCAC-AGAGATGAGTGCC
66 GACATGGCATCAG-ACTAGAGA-G-G-GCT
* * * *
80191621 AGTGTAAGACATATCTGGGACATGCATCAGCC-TCGACCGA-GATAGCCAGTGTAAGA-CGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--A-CTATGAGAGCCAGTGTAAGACCATGTC
* * *
80191683 TGGGACA-CGTATC-GGCTA-AGAGTTGTGCT
63 TGGGACATGGCATCAGACTAGAGAG--G-GCT
* *
80191712 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCTGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTC
80191776 TGGGACATGGCAT
63 TGGGACATGGCAT
80191789 TCGCAATATA
Statistics
Matches: 220, Mismatches: 27, Indels: 30
0.79 0.10 0.11
Matches are distributed among these distances:
90 1 0.00
91 40 0.18
92 20 0.09
93 21 0.10
94 118 0.54
95 18 0.08
96 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGACTAGAGAGGGCT
Found at i:80199318 original size:20 final size:22
Alignment explanation
Indices: 80199293--80199332 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
80199283 CATATTCTCA
80199293 TTTTTTT-ATTTTCT-TCCTTT
1 TTTTTTTAATTTTCTCTCCTTT
80199313 TTTTTTTAATTTTCTCTCCT
1 TTTTTTTAATTTTCTCTCCT
80199333 ATTTGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTTTTAATTTTCTCTCCTTT
Found at i:80205814 original size:27 final size:27
Alignment explanation
Indices: 80205783--80206105 Score: 328
Period size: 27 Copynumber: 12.0 Consensus size: 27
80205773 GACCCCGGTT
80205783 TGTAAAATTACTAAAATACCCCTATAG
1 TGTAAAATTACTAAAATACCCCTATAG
* * *
80205810 TGTAAAATTACTGAAATACGCCTGAT-T
1 TGTAAAATTACTAAAATACCCCT-ATAG
* * **
80205837 TGTAAAATTACCAAAATACCTCTGCAG
1 TGTAAAATTACTAAAATACCCCTATAG
* * *
80205864 TGTAAAATTA-TCGAAATACCCTTGTAG
1 TGTAAAATTACT-AAAATACCCCTATAG
* * *
80205891 TGTAAAATTA-TCGAGATGCCCCTATAG
1 TGTAAAATTACT-AAAATACCCCTATAG
* *
80205918 TGTAAAATTACTGAAATACCCTTATAG
1 TGTAAAATTACTAAAATACCCCTATAG
* * *
80205945 TGTAAAATTACCAAAATACCCCTGTAT
1 TGTAAAATTACTAAAATACCCCTATAG
* *
80205972 TGTAAAATTACTAAAATACCCTTCTAG
1 TGTAAAATTACTAAAATACCCCTATAG
* * *
80205999 TGTAAAATTACCAAAATACCCATGTAG
1 TGTAAAATTACTAAAATACCCCTATAG
* * *
80206026 TGTAAAATTACTGAAATACCCATGTAG
1 TGTAAAATTACTAAAATACCCCTATAG
*
80206053 TGTAAAATTACCAAAATACCCCTATAG
1 TGTAAAATTACTAAAATACCCCTATAG
** *
80206080 TGTAAAATTACCGAAATACCCATATA
1 TGTAAAATTACTAAAATACCCCTATA
80206106 AGGCAAAATG
Statistics
Matches: 250, Mismatches: 42, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
27 247 0.99
28 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACTAAAATACCCCTATAG
Found at i:80206102 original size:54 final size:54
Alignment explanation
Indices: 80205783--80206100 Score: 426
Period size: 54 Copynumber: 5.9 Consensus size: 54
80205773 GACCCCGGTT
* *
80205783 TGTAAAATTACTAAAATACCCCTATAGTGTAAAATTACTGAAATACGCC-TG-ATT
1 TGTAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATAC-CCTTGTA-G
* **
80205837 TGTAAAATTACCAAAATACCTCTGCAGTGTAAAATTA-TCGAAATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCCTATAGTGTAAAATTACT-GAAATACCCTTGTAG
* * * * *
80205891 TGTAAAATTATCGAGATGCCCCTATAGTGTAAAATTACTGAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATACCCTTGTAG
* * * *
80205945 TGTAAAATTACCAAAATACCCCTGTATTGTAAAATTACTAAAATACCCTTCTAG
1 TGTAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATACCCTTGTAG
* * *
80205999 TGTAAAATTACCAAAATACCCATGTAGTGTAAAATTACTGAAATACCCATGTAG
1 TGTAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATACCCTTGTAG
*
80206053 TGTAAAATTACCAAAATACCCCTATAGTGTAAAATTACCGAAATACCC
1 TGTAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATACCC
80206101 ATATAAGGCA
Statistics
Matches: 231, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
53 3 0.01
54 226 0.98
55 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (54 bp):
TGTAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATACCCTTGTAG
Found at i:80206114 original size:81 final size:81
Alignment explanation
Indices: 80205783--80206105 Score: 373
Period size: 81 Copynumber: 4.0 Consensus size: 81
80205773 GACCCCGGTT
* ** * *
80205783 TGTAAAATTACTAAAATACCCCTATAGTGTAAAATTACTGAAATACGCCTGAT-TTGTAAAATTA
1 TGTAAAATTACTAAAATACCCCTGTAGTGTAAAATTACCAAAATACCCCT-ATAGTGTAAAATTA
**
80205847 CCAAAATACCTC-TGCAG
65 CCAAAATACC-CATATAG
* * * * * *
80205864 TGTAAAATTA-TCGAAATACCCTTGTAGTGTAAAATTATCGAGATGCCCCTATAGTGTAAAATTA
1 TGTAAAATTACT-AAAATACCCCTGTAGTGTAAAATTACCAAAATACCCCTATAGTGTAAAATTA
** *
80205928 CTGAAATACCCTTATAG
65 CCAAAATACCCATATAG
* * * * *
80205945 TGTAAAATTACCAAAATACCCCTGTATTGTAAAATTACTAAAATACCCTTCTAGTGTAAAATTAC
1 TGTAAAATTACTAAAATACCCCTGTAGTGTAAAATTACCAAAATACCCCTATAGTGTAAAATTAC
*
80206010 CAAAATACCCATGTAG
66 CAAAATACCCATATAG
* *
80206026 TGTAAAATTACTGAAATACCCATGTAGTGTAAAATTACCAAAATACCCCTATAGTGTAAAATTAC
1 TGTAAAATTACTAAAATACCCCTGTAGTGTAAAATTACCAAAATACCCCTATAGTGTAAAATTAC
*
80206091 CGAAATACCCATATA
66 CAAAATACCCATATA
80206106 AGGCAAAATG
Statistics
Matches: 201, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
80 4 0.02
81 197 0.98
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
TGTAAAATTACTAAAATACCCCTGTAGTGTAAAATTACCAAAATACCCCTATAGTGTAAAATTAC
CAAAATACCCATATAG
Found at i:80206655 original size:32 final size:32
Alignment explanation
Indices: 80206600--80206671 Score: 94
Period size: 32 Copynumber: 2.2 Consensus size: 32
80206590 ATATTTACCC
*
80206600 ATGGCTGTGTGCTTATCATATTA-CAGCTACTG
1 ATGGCTGTGTGCTTATCAAATTACCA-CTACTG
*
80206632 ATGGCTTTGTG-TTGATCAAATTACCACTACTG
1 ATGGCTGTGTGCTT-ATCAAATTACCACTACTG
80206664 ATGGCTGT
1 ATGGCTGT
80206672 AAGCCATGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 2 0.06
32 31 0.89
33 2 0.06
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (32 bp):
ATGGCTGTGTGCTTATCAAATTACCACTACTG
Found at i:80209911 original size:81 final size:80
Alignment explanation
Indices: 80209775--80210124 Score: 449
Period size: 81 Copynumber: 4.3 Consensus size: 80
80209765 GACCCCGATT
* *
80209775 TGTAAAATTATC-AAAATACCCCTAGT-TTGTAAAATTACCA-AAATACTCCTGTAGTGTAAAAT
1 TGTAAAATTA-CGAAAATACCCCT-GTAGTGTAAAATTA-CAGAAATAC-CCTATAGTGTAAAAT
* * *
80209837 TATTGAAATACCCTTGTCG
62 TATTGAAATACCCCTATAG
*
80209856 TGTAAAATTACGAAAATACCCCTGTGGTGTAAAATTACAGAAATACCACTATAGTGTAAAATTAT
1 TGTAAAATTACGAAAATACCCCTGTAGTGTAAAATTACAGAAATACC-CTATAGTGTAAAATTAT
80209921 TGAAATACCCCTATAG
65 TGAAATACCCCTATAG
*
80209937 TGTAAAAGTACTG-AAATACCCCTGTAGTGTAAAATTACAGAAATACCCTATAGTGTAAAATTAT
1 TGTAAAATTAC-GAAAATACCCCTGTAGTGTAAAATTACAGAAATACCCTATAGTGTAAAATTAT
80210001 TGAAATACCCCTATAG
65 TGAAATACCCCTATAG
* * * * *
80210017 TGTAAAAGTACTG-AAACACCCCTGTAGTGTAAAATTACCGAAATACCCCTGTAATGTAAAATTA
1 TGTAAAATTAC-GAAAATACCCCTGTAGTGTAAAATTACAGAAATA-CCCTATAGTGTAAAATTA
*
80210081 TCGAAATACCCCTATAG
64 TTGAAATACCCCTATAG
* * *
80210098 TGTAAAATTACCAAAATTCCCTTGTAG
1 TGTAAAATTACGAAAATACCCCTGTAG
80210125 GGAAAAATGA
Statistics
Matches: 245, Mismatches: 17, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
80 82 0.33
81 162 0.66
82 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (80 bp):
TGTAAAATTACGAAAATACCCCTGTAGTGTAAAATTACAGAAATACCCTATAGTGTAAAATTATT
GAAATACCCCTATAG
Found at i:80210114 original size:27 final size:27
Alignment explanation
Indices: 80209775--80210114 Score: 362
Period size: 27 Copynumber: 12.6 Consensus size: 27
80209765 GACCCCGATT
* * *
80209775 TGTAAAATTATCAAAATACCCCTAGT-T
1 TGTAAAATTACCGAAATACCCCTA-TAG
* * *
80209802 TGTAAAATTACCAAAATACTCCTGTAG
1 TGTAAAATTACCGAAATACCCCTATAG
** * * *
80209829 TGTAAAATTATTGAAATACCCTTGTCG
1 TGTAAAATTACCGAAATACCCCTATAG
* *
80209856 TGTAAAATTA-CGAAAATACCCCTGTGG
1 TGTAAAATTACCG-AAATACCCCTATAG
* *
80209883 TGTAAAATTACAGAAATACCACTATAG
1 TGTAAAATTACCGAAATACCCCTATAG
**
80209910 TGTAAAATTATTGAAATACCCCTATAG
1 TGTAAAATTACCGAAATACCCCTATAG
* * *
80209937 TGTAAAAGTACTGAAATACCCCTGTAG
1 TGTAAAATTACCGAAATACCCCTATAG
*
80209964 TGTAAAATTACAGAAATA-CCCTATAG
1 TGTAAAATTACCGAAATACCCCTATAG
**
80209990 TGTAAAATTATTGAAATACCCCTATAG
1 TGTAAAATTACCGAAATACCCCTATAG
* * * *
80210017 TGTAAAAGTACTGAAACACCCCTGTAG
1 TGTAAAATTACCGAAATACCCCTATAG
* *
80210044 TGTAAAATTACCGAAATACCCCTGTAA
1 TGTAAAATTACCGAAATACCCCTATAG
*
80210071 TGTAAAATTATCGAAATACCCCTATAG
1 TGTAAAATTACCGAAATACCCCTATAG
*
80210098 TGTAAAATTACCAAAAT
1 TGTAAAATTACCGAAAT
80210115 TCCCTTGTAG
Statistics
Matches: 268, Mismatches: 41, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
26 25 0.09
27 242 0.90
28 1 0.00
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCCTATAG
Found at i:80210572 original size:27 final size:27
Alignment explanation
Indices: 80210541--80210630 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
80210531 GTTTTTTGCT
80210541 AATCATATTTACCTATGGCTATGTGCC
1 AATCATATTTACCTATGGCTATGTGCC
* * * * *
80210568 TATCATATTTA-TTGATGACTCTGTGTC
1 AATCATATTTACCT-ATGGCTATGTGCC
* * * *
80210595 GACCATATTTACCCATGGCTGTGTGCC
1 AATCATATTTACCTATGGCTATGTGCC
80210622 AATCATATT
1 AATCATATT
80210631 ACAGCTACTG
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
26 1 0.02
27 46 0.98
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (27 bp):
AATCATATTTACCTATGGCTATGTGCC
Found at i:80210664 original size:32 final size:32
Alignment explanation
Indices: 80210616--80210676 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
80210606 CCCATGGCTG
*
80210616 TGTGCCAATCATATTACAGCTACTGATGGATT
1 TGTGCCAATCAAATTACAGCTACTGATGGATT
* *
80210648 TGTGCCGATCAAATTACTGCTACTGATGG
1 TGTGCCAATCAAATTACAGCTACTGATGG
80210677 CTATAAGCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (32 bp):
TGTGCCAATCAAATTACAGCTACTGATGGATT
Found at i:80215362 original size:5 final size:5
Alignment explanation
Indices: 80215352--80215383 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
80215342 GATACCAACC
80215352 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
80215384 TTTATTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:80225986 original size:23 final size:23
Alignment explanation
Indices: 80225934--80225980 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
80225924 TCAATCAATG
80225934 AGATAACATAAAATTTAACTACA
1 AGATAACATAAAATTTAACTACA
80225957 AGATAACATAAAATTTAACTACA
1 AGATAACATAAAATTTAACTACA
80225980 A
1 A
80225981 AGTAACTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.57, C:0.13, G:0.04, T:0.26
Consensus pattern (23 bp):
AGATAACATAAAATTTAACTACA
Found at i:80229051 original size:15 final size:14
Alignment explanation
Indices: 80229031--80229060 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
80229021 CATCACTCAA
80229031 TTCATTCTTCCATCT
1 TTCATTCTT-CATCT
80229046 TTCATTCTTCATCT
1 TTCATTCTTCATCT
80229060 T
1 T
80229061 CTATTTGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.13, C:0.30, G:0.00, T:0.57
Consensus pattern (14 bp):
TTCATTCTTCATCT
Found at i:80234390 original size:26 final size:27
Alignment explanation
Indices: 80234338--80234390 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
80234328 AGGGGCATTT
* *
80234338 CAGTCATTTTACCACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAAGGAAAAA
80234365 CAGTCATTTTA-CACATAAAGGAAAAA
1 CAGTCATTTTACCACATAAAGGAAAAA
80234391 AGGTCAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.23
Consensus pattern (27 bp):
CAGTCATTTTACCACATAAAGGAAAAA
Found at i:80234396 original size:26 final size:27
Alignment explanation
Indices: 80234339--80234392 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
80234329 GGGGCATTTC
* *
80234339 AGTCATTTTACCACATAAGGGCAAAAC
1 AGTCATTTTACCACATAAAGGCAAAAA
80234366 AGTCATTTTA-CACATAAAGG-AAAAA
1 AGTCATTTTACCACATAAAGGCAAAAA
80234391 AG
1 AG
80234393 GTCAATTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.24
26 9 0.36
27 10 0.40
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (27 bp):
AGTCATTTTACCACATAAAGGCAAAAA
Found at i:80240217 original size:46 final size:45
Alignment explanation
Indices: 80240117--80240206 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 45
80240107 GTAACCCGCC
* * **
80240117 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCCCAAA
80240163 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCCAAA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAAA
80240207 TATTCTAGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 5 0.12
46 35 0.88
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAAA
Found at i:80242600 original size:15 final size:15
Alignment explanation
Indices: 80242578--80242653 Score: 84
Period size: 15 Copynumber: 5.1 Consensus size: 15
80242568 AAAACCGAAA
80242578 AAAGAAACCCAAGAT
1 AAAGAAACCCAAGAT
*
80242593 AGAGAAACCC-AGAAT
1 AAAGAAACCCAAG-AT
*
80242608 AAAGAAATCC-AGAAT
1 AAAGAAACCCAAG-AT
* *
80242623 AAAGAGATCCAAGAT
1 AAAGAAACCCAAGAT
80242638 AAAGAAACCCAAGAT
1 AAAGAAACCCAAGAT
80242653 A
1 A
80242654 CGATATTATG
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
14 2 0.04
15 49 0.92
16 2 0.04
ACGTcount: A:0.58, C:0.17, G:0.16, T:0.09
Consensus pattern (15 bp):
AAAGAAACCCAAGAT
Found at i:80249922 original size:27 final size:27
Alignment explanation
Indices: 80249846--80249923 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
80249836 AACCATACAT
* *
80249846 CACATAGGGGCAAGATAGTCAATTTAC
1 CACATAGGGGCAAAATAGTCATTTTAC
* *** *
80249873 CATATAGGGGCATTTTAGCCATTTTAC
1 CACATAGGGGCAAAATAGTCATTTTAC
*
80249900 CACATAAGGGCAAAATAGTCATTT
1 CACATAGGGGCAAAATAGTCATTT
80249924 CATCAAATTA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (27 bp):
CACATAGGGGCAAAATAGTCATTTTAC
Found at i:80250068 original size:18 final size:18
Alignment explanation
Indices: 80250042--80250082 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
80250032 CATATTGCGG
80250042 GCCCATGTGGGCCCACAT-
1 GCCCATGT-GGCCCACATA
*
80250060 GCCCGTGTGGCCCACATA
1 GCCCATGTGGCCCACATA
80250078 GCCCA
1 GCCCA
80250083 AAAATAGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.17, C:0.41, G:0.27, T:0.15
Consensus pattern (18 bp):
GCCCATGTGGCCCACATA
Found at i:80252502 original size:18 final size:19
Alignment explanation
Indices: 80252471--80252508 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
80252461 AGTATTAAAG
*
80252471 CAAAACAAATAT-AAATCC
1 CAAAACAAAAATAAAATCC
*
80252489 CAAAATAAAAATAAAATCC
1 CAAAACAAAAATAAAATCC
80252508 C
1 C
80252509 GAGAGGCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.63, C:0.21, G:0.00, T:0.16
Consensus pattern (19 bp):
CAAAACAAAAATAAAATCC
Found at i:80257272 original size:36 final size:36
Alignment explanation
Indices: 80257223--80257317 Score: 101
Period size: 36 Copynumber: 2.6 Consensus size: 36
80257213 ATTAATTAAT
80257223 TTTTAAA--ATTTAAAAAATTAGAAAA-TA-ATAAAAA
1 TTTTAAATTATTTAAAAAATTA-AAAAGTATA-AAAAA
*
80257257 TTTTAAATTATTTAAAAAGTATAAAAAGTATAAAAAA
1 TTTTAAATTATTTAAAAAAT-TAAAAAGTATAAAAAA
80257294 TATTTATAATT-TTTAAAAAATTAA
1 T-TTTA-AATTATTTAAAAAATTAA
80257318 TTAATTGCTT
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
34 7 0.13
36 14 0.27
37 13 0.25
38 14 0.27
39 4 0.08
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (36 bp):
TTTTAAATTATTTAAAAAATTAAAAAGTATAAAAAA
Found at i:80263478 original size:32 final size:32
Alignment explanation
Indices: 80263426--80263503 Score: 140
Period size: 32 Copynumber: 2.4 Consensus size: 32
80263416 ACTAATCCCT
80263426 ACAATATAAGAAT-GTTTGTCAATTGAGCTCAA
1 ACAA-ATAAGAATAGTTTGTCAATTGAGCTCAA
80263458 ACAAATAAGAATAGTTTGTCAATTGAGCTCAA
1 ACAAATAAGAATAGTTTGTCAATTGAGCTCAA
80263490 ACAAATAAGAATAG
1 ACAAATAAGAATAG
80263504 ACTTGAGCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
31 8 0.18
32 37 0.82
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (32 bp):
ACAAATAAGAATAGTTTGTCAATTGAGCTCAA
Found at i:80263586 original size:28 final size:28
Alignment explanation
Indices: 80263554--80263610 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
80263544 ACAAGAAAAG
80263554 TATGAAAGAATTAAACACTAAGGTTGTA
1 TATGAAAGAATTAAACACTAAGGTTGTA
80263582 TATGAAAGAATTAAACACTAAGGTTGTA
1 TATGAAAGAATTAAACACTAAGGTTGTA
80263610 T
1 T
80263611 TGATTGATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.30
Consensus pattern (28 bp):
TATGAAAGAATTAAACACTAAGGTTGTA
Found at i:80263907 original size:21 final size:21
Alignment explanation
Indices: 80263882--80263921 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
80263872 GATATCTGGT
*
80263882 AAAAGGTATTGATACTTTTCG
1 AAAAGCTATTGATACTTTTCG
80263903 AAAAGCTATTGATACTTTT
1 AAAAGCTATTGATACTTTT
80263922 TTGTAATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (21 bp):
AAAAGCTATTGATACTTTTCG
Found at i:80267553 original size:47 final size:47
Alignment explanation
Indices: 80267499--80267739 Score: 383
Period size: 47 Copynumber: 5.1 Consensus size: 47
80267489 TTAGGATGTT
** * *
80267499 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
80267546 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
80267593 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
80267640 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
80267687 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
80267734 ATGTGA
1 ATGTGA
80267740 AATATGTATG
Statistics
Matches: 180, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 180 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:80267574 original size:25 final size:25
Alignment explanation
Indices: 80267546--80267624 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
80267536 CGAATGGCCA
80267546 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
80267571 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
80267593 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
80267618 ATGTGAT
1 ATGTGAT
80267625 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:80267599 original size:22 final size:22
Alignment explanation
Indices: 80267528--80267646 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
80267518 GTATATATGA
80267528 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
80267550 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
80267575 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
80267597 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
80267622 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
80267644 GAT
1 GAT
80267647 GAATGTGAGC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:80267695 original size:25 final size:25
Alignment explanation
Indices: 80267620--80267695 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
80267610 ATGCATATAT
80267620 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
80267645 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
80267667 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
80267692 GTGA
1 GTGA
80267696 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:80267773 original size:48 final size:48
Alignment explanation
Indices: 80267710--80267845 Score: 202
Period size: 50 Copynumber: 2.8 Consensus size: 48
80267700 GAACATGCAT
80267710 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
80267758 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
* *
80267808 ATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
80267846 GGCGATGTGC
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
47 1 0.01
48 33 0.42
49 4 0.05
50 40 0.51
51 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:80267807 original size:141 final size:139
Alignment explanation
Indices: 80267528--80267792 Score: 347
Period size: 141 Copynumber: 1.9 Consensus size: 139
80267518 GTATATATGA
* *
80267528 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * * *
80267593 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
66 ATGTGATAAATGTGAACATGCA-ATATGTGATAAAGCCGAATGGCCAATGTGA-GAATATGAACA
80267658 TGCATATGTGT
129 TGCATATGTGT
* * *
80267669 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 GATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * *
80267734 ATGTGA-AATATGTATGAGATATGC-ATATGTGGTAAAGCCGAATGGTCAATGTGA-AATAT
66 ATGTGATAA-ATG--TGA-ACATGCAATATGTGATAAAGCCGAATGGCCAATGTGAGAATAT
80267793 ATATATGAGA
Statistics
Matches: 109, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
140 5 0.05
141 69 0.63
142 27 0.25
143 3 0.03
144 5 0.05
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (139 bp):
GATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
ATGTGATAAATGTGAACATGCAATATGTGATAAAGCCGAATGGCCAATGTGAGAATATGAACATG
CATATGTGT
Found at i:80267860 original size:50 final size:50
Alignment explanation
Indices: 80267704--80267866 Score: 192
Period size: 50 Copynumber: 3.3 Consensus size: 50
80267694 GAATATGAAC
*
80267704 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
80267754 ATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGAT
* * * *
80267804 AT--GTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
80267852 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
80267867 CCGAACGACC
Statistics
Matches: 97, Mismatches: 7, Indels: 17
0.80 0.06 0.14
Matches are distributed among these distances:
47 1 0.01
48 38 0.39
49 4 0.04
50 48 0.49
51 6 0.06
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.31
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:80268100 original size:37 final size:37
Alignment explanation
Indices: 80267992--80268100 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
80267982 GGAAATATAT
* * *
80267992 TCCGGGTAAGACCCGATGACTACGTCTGGAGGTTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
80268029 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
80268066 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
80268101 CGTTTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:80271004 original size:27 final size:28
Alignment explanation
Indices: 80270948--80271017 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
80270938 AAACTTGTAC
80270948 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
80270976 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
80271003 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80271018 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:80271028 original size:27 final size:27
Alignment explanation
Indices: 80270948--80271029 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
80270938 AAACTTGTAC
* *
80270948 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
80270976 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
80271003 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
80271030 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:80273350 original size:40 final size:40
Alignment explanation
Indices: 80273271--80273428 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
80273261 TTCGAATGAT
* * * *
80273271 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
80273311 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
80273351 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
80273391 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
80273429 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:80273449 original size:80 final size:80
Alignment explanation
Indices: 80273271--80273458 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
80273261 TTCGAATGAT
* *
80273271 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
80273336 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
80273351 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
80273412 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
80273432 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
80273459 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:80280467 original size:29 final size:29
Alignment explanation
Indices: 80280434--80280507 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
80280424 GTGACGAGAT
80280434 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
80280463 TGGCACTAAGTGTGCATGTTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
80280492 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
80280508 AGCTCGAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:80280523 original size:29 final size:29
Alignment explanation
Indices: 80280491--80280566 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
80280481 TTGGAAATAT
* *
80280491 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * * *
80280520 ATGGCATTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
80280549 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
80280567 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:80285405 original size:27 final size:28
Alignment explanation
Indices: 80285346--80285418 Score: 121
Period size: 27 Copynumber: 2.6 Consensus size: 28
80285336 TTAAAACTTG
*
80285346 TATAGCACTAAGAGTGCGAGTTTGATCA
1 TATAGCACTAAGTGTGCGAGTTTGATCA
*
80285374 TATAGCACTAAGTGTGCGAG-TTGATTA
1 TATAGCACTAAGTGTGCGAGTTTGATCA
80285401 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
80285419 GACTCACTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTTGATCA
Found at i:80285429 original size:27 final size:27
Alignment explanation
Indices: 80285346--80285430 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 27
80285336 TTAAAACTTG
* * *
80285346 TATAGCACTAAGAGTGCGAGTTTGA-TCA
1 TATAGCACTAAGTGTGCGAG-CTCACT-A
* * *
80285374 TATAGCACTAAGTGTGCGAGTTGATTA
1 TATAGCACTAAGTGTGCGAGCTCACTA
80285401 TATAGCACTAAGTGTGCG-GACTCACTA
1 TATAGCACTAAGTGTGCGAG-CTCACTA
80285428 TAT
1 TAT
80285431 GCTTTTGAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 1 0.02
27 30 0.59
28 20 0.39
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (27 bp):
TATAGCACTAAGTGTGCGAGCTCACTA
Found at i:80287580 original size:47 final size:47
Alignment explanation
Indices: 80287526--80287766 Score: 356
Period size: 47 Copynumber: 5.1 Consensus size: 47
80287516 TTAGGATGTT
** * * *
80287526 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
80287573 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
80287620 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
80287667 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
80287714 ATGTGGTGAATATGAACATGCATATATCTGGTAAAGTCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
80287761 ATGTGA
1 ATGTGA
80287767 AATATGTATG
Statistics
Matches: 177, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 177 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:80287601 original size:25 final size:25
Alignment explanation
Indices: 80287573--80287651 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
80287563 CAAATGGCCA
80287573 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
80287598 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
80287620 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
80287645 ATGTGAT
1 ATGTGAT
80287652 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:80287626 original size:22 final size:22
Alignment explanation
Indices: 80287598--80287673 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
80287588 ACATGCATAT
80287598 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
80287620 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
80287644 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
80287667 ATGTGAT
1 ATGTGAT
80287674 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:80287722 original size:25 final size:25
Alignment explanation
Indices: 80287647--80287722 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
80287637 ATGCATATAT
80287647 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
80287672 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
80287694 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
80287719 GTGA
1 GTGA
80287723 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:80287755 original size:94 final size:94
Alignment explanation
Indices: 80287526--80287814 Score: 332
Period size: 94 Copynumber: 3.1 Consensus size: 94
80287516 TTAGGATGTT
* ** * ** * * *
80287526 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATATGAACATGCATATATCTGATAAAGCCGAATGGCCAATGTGATGAATGTGAGCA
*
80287591 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * *
80287620 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATATGAACATGCATATATCTGATAAAGCCGAATGGCCAATGTGATGAATGTGAGCA
80287685 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * * * *
80287714 ATGTGGTGAATATGAACATGCATATATCTGGTAAAGTCGAATGGCTAATGTGA-AATATGTATGA
1 ATGTGATGAATATGAACATGCATATATCTGATAAAGCCGAATGGCCAATGTGATGA-ATG--TGA
* * *
80287778 GATATGCATATGTG-G-TAAAGCCGAATGGTCA
63 G-CATGCATATGTGTGATAAGGCCGAATGGCCA
80287809 ATGTGA
1 ATGTGA
80287815 AATATATTTA
Statistics
Matches: 172, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
93 1 0.01
94 136 0.79
95 19 0.11
96 5 0.03
97 11 0.06
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATATGAACATGCATATATCTGATAAAGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:80287804 original size:48 final size:48
Alignment explanation
Indices: 80287737--80287872 Score: 184
Period size: 50 Copynumber: 2.8 Consensus size: 48
80287727 GAACATGCAT
* *
80287737 ATATCTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
80287785 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATTTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
* *
80287835 ATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
80287873 GGTGATGTGC
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
47 1 0.01
48 31 0.40
49 4 0.05
50 40 0.52
51 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:80287834 original size:141 final size:139
Alignment explanation
Indices: 80287555--80287819 Score: 329
Period size: 141 Copynumber: 1.9 Consensus size: 139
80287545 GTATATATGA
* * *
80287555 GATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCAAATGGCCAATGTGATGAATATGAACATGCATATATCTGATAAAGCCGAATGGCCA
* * *
80287620 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
66 ATGTGATAAATGTGAACATGCA-ATATGTGATAAAGCCGAATGGCCAATGTGA-GAATATGAGCA
80287685 TGCATATGTGT
129 TGCATATGTGT
* * * * *
80287696 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATCTGGTAAAGTCGAATGGCTA
1 GATAAGGCCAAATGGCCAATGTGATGAATATGAACATGCATATATCTGATAAAGCCGAATGGCCA
* * *
80287761 ATGTGA-AATATGTATGAGATATGC-ATATGTGGTAAAGCCGAATGGTCAATGTGA-AATAT
66 ATGTGATAA-ATG--TGA-ACATGCAATATGTGATAAAGCCGAATGGCCAATGTGAGAATAT
80287820 ATTTATGAGA
Statistics
Matches: 106, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
140 5 0.05
141 66 0.62
142 27 0.25
143 3 0.03
144 5 0.05
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (139 bp):
GATAAGGCCAAATGGCCAATGTGATGAATATGAACATGCATATATCTGATAAAGCCGAATGGCCA
ATGTGATAAATGTGAACATGCAATATGTGATAAAGCCGAATGGCCAATGTGAGAATATGAGCATG
CATATGTGT
Found at i:80287887 original size:50 final size:50
Alignment explanation
Indices: 80287731--80287893 Score: 167
Period size: 50 Copynumber: 3.3 Consensus size: 50
80287721 GAATATGAAC
* *
80287731 ATGCATATATCTGGTAAAG-TCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCT-GAATGGCTAATGTGAAATATGTATGAGAT
* *
80287781 ATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATTTATGAGAT
1 ATGCGTATATGTGGTAAAGCTGAATGGCT-AATGTG-AA-ATATGTATGAGAT
* * *
80287831 AT--GTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTAGGTGAT
1 ATGCGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGAT
*
80287879 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
80287894 CCGAACGACC
Statistics
Matches: 94, Mismatches: 9, Indels: 19
0.77 0.07 0.16
Matches are distributed among these distances:
47 1 0.01
48 35 0.37
49 4 0.04
50 48 0.51
51 6 0.06
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.33
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:80288118 original size:36 final size:37
Alignment explanation
Indices: 80288019--80288126 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
80288009 GGAAATATAT
* * *
80288019 TCCGGGTAAGACCCGATGACTACGTCTGGAGGTTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
80288056 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
80288093 TCCGGGTAA-ACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
80288127 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
36 23 0.35
37 43 0.65
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:80299178 original size:23 final size:23
Alignment explanation
Indices: 80299148--80299238 Score: 94
Period size: 23 Copynumber: 4.0 Consensus size: 23
80299138 GCTTACTGAC
*
80299148 TTCAGCTCATTGGAGCTTATCGG
1 TTCAGCTCATTAGAGCTTATCGG
*
80299171 TTCAGCTCATTAGAGCTTA-CTG
1 TTCAGCTCATTAGAGCTTATCGG
* * * *
80299193 TTCAGCTCAATAGACCTTACCGT
1 TTCAGCTCATTAGAGCTTATCGG
**
80299216 TTCAGCTCAGGAGGAGCTTATCG
1 TTCAGCTCATTA-GAGCTTATCG
80299239 ATCATGTTTC
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
22 19 0.34
23 29 0.52
24 8 0.14
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (23 bp):
TTCAGCTCATTAGAGCTTATCGG
Found at i:80299198 original size:22 final size:23
Alignment explanation
Indices: 80299129--80299224 Score: 97
Period size: 23 Copynumber: 4.2 Consensus size: 23
80299119 TATATATCAA
*
80299129 CTCATAAGAGCTTACTGACTTCAG
1 CTCATTAGAGCTTACTGA-TTCAG
* *
80299153 CTCATTGGAGCTTA-TCGGTTCAG
1 CTCATTAGAGCTTACT-GATTCAG
80299176 CTCATTAGAGCTTACTG-TTCAG
1 CTCATTAGAGCTTACTGATTCAG
* * * *
80299198 CTCAATAGACCTTACCGTTTCAG
1 CTCATTAGAGCTTACTGATTCAG
80299221 CTCA
1 CTCA
80299225 GGAGGAGCTT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
22 19 0.31
23 29 0.47
24 14 0.23
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (23 bp):
CTCATTAGAGCTTACTGATTCAG
Found at i:80299220 original size:45 final size:46
Alignment explanation
Indices: 80299129--80299224 Score: 122
Period size: 45 Copynumber: 2.1 Consensus size: 46
80299119 TATATATCAA
* * * *
80299129 CTCATAAGAGCTTACTGACTTCAGCTCATTGGAGCTTATCGGTTCAG
1 CTCATAAGAGCTTACTGA-TTCAGCTCAATAGACCTTACCGGTTCAG
* *
80299176 CTCATTAGAGCTTACTG-TTCAGCTCAATAGACCTTACCGTTTCAG
1 CTCATAAGAGCTTACTGATTCAGCTCAATAGACCTTACCGGTTCAG
80299221 CTCA
1 CTCA
80299225 GGAGGAGCTT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 27 0.63
47 16 0.37
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (46 bp):
CTCATAAGAGCTTACTGATTCAGCTCAATAGACCTTACCGGTTCAG
Found at i:80302532 original size:40 final size:40
Alignment explanation
Indices: 80302480--80302693 Score: 326
Period size: 40 Copynumber: 5.4 Consensus size: 40
80302470 ATGATAACCA
*
80302480 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
80302520 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
80302560 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
80302600 GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* **
80302640 GGCTATGTCCCGAAGGCA-TTCAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
80302678 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
80302694 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
38 15 0.09
39 14 0.09
40 133 0.82
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:80309516 original size:44 final size:44
Alignment explanation
Indices: 80309466--80309555 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
80309456 CTAAATCTAG
80309466 ATGAACAATGGGGGTTGTCACTTAGGTTAAGATCAAAGAAATTA
1 ATGAACAATGGGGGTTGTCACTTAGGTTAAGATCAAAGAAATTA
80309510 ATGAACAATGGGGGTTGTCACTTAGGTTAAGATCAAAGAAATTA
1 ATGAACAATGGGGGTTGTCACTTAGGTTAAGATCAAAGAAATTA
80309554 AT
1 AT
80309556 CTTGTTAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (44 bp):
ATGAACAATGGGGGTTGTCACTTAGGTTAAGATCAAAGAAATTA
Found at i:80310739 original size:40 final size:40
Alignment explanation
Indices: 80310667--80310882 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
80310657 TGGATGATAA
80310667 CCGGGCTAAGTCCCGAA-GCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
80310706 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80310746 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80310786 CCGGGCTAAGTCCCGAAGACATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80310826 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
80310865 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80310883 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 15 0.09
39 32 0.20
40 117 0.71
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80314648 original size:12 final size:12
Alignment explanation
Indices: 80314631--80314655 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80314621 AACATTTGGC
80314631 ATTGAAGTCTAT
1 ATTGAAGTCTAT
80314643 ATTGAAGTCTAT
1 ATTGAAGTCTAT
80314655 A
1 A
80314656 GAGGATGGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (12 bp):
ATTGAAGTCTAT
Found at i:80315307 original size:21 final size:22
Alignment explanation
Indices: 80315259--80315304 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
80315249 CTTTGATAAT
80315259 AAATTTGATAATACTTAAAAAC
1 AAATTTGATAATACTTAAAAAC
80315281 AAATTTGATAATACTTAAAAAC
1 AAATTTGATAATACTTAAAAAC
80315303 AA
1 AA
80315305 TTTAAAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (22 bp):
AAATTTGATAATACTTAAAAAC
Found at i:80322150 original size:43 final size:43
Alignment explanation
Indices: 80322062--80322186 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
80322052 TACCGAGATG
* * * *
80322062 TGATTACATGTAAAACCATGTTTGGGACATTGACATTGAATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAATTA
*
80322105 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TTATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAAT-TA
*** * * *
80322148 TGATTTTTTGTAAGACCCTGTCTAGGACAGTGGCATCGA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGA
80322187 TATGTGACAT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 1 0.01
43 68 0.99
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAATTA
Found at i:80322203 original size:43 final size:43
Alignment explanation
Indices: 80322111--80322217 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 43
80322101 ATTATGATTA
* * * **
80322111 CATGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTT
1 CATGTAAGACCATGTCTAGGACAGTGGCATCGATATATGACAT
** * *
80322154 TTTGTAAGACCCTGTCTAGGACAGTGGCATCGATATGTGACAT
1 CATGTAAGACCATGTCTAGGACAGTGGCATCGATATATGACAT
* *
80322197 CATGTAAGATCATATCTAGGA
1 CATGTAAGACCATGTCTAGGA
80322218 TATGGTGTTG
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCATGTCTAGGACAGTGGCATCGATATATGACAT
Found at i:80323003 original size:22 final size:20
Alignment explanation
Indices: 80322978--80323027 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 20
80322968 TGTTATGTAA
*
80322978 ATTTGATGATTTTGGCATATTG
1 ATTTGATG-TTTTGGC-TATGG
80323000 ATTTGGTATGTTTTGGCTATGG
1 ATTT-G-ATGTTTTGGCTATGG
80323022 ATTTGA
1 ATTTGA
80323028 GTAGATAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 12 0.48
23 8 0.32
24 3 0.12
ACGTcount: A:0.20, C:0.04, G:0.26, T:0.50
Consensus pattern (20 bp):
ATTTGATGTTTTGGCTATGG
Found at i:80324522 original size:46 final size:44
Alignment explanation
Indices: 80324427--80324541 Score: 155
Period size: 46 Copynumber: 2.6 Consensus size: 44
80324417 CCGAAATTTC
* *
80324427 GCCTGCTAGGCTCG--AGGCCCGATATCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAAGGCCCGA-ATAATTTCACCGGCATAATA
80324470 GCCTGCTAGGCTCGAAAGGCCCGAATAATGTCTCACCGGCATAATA
1 GCCTGCTAGGCTCGAAAGGCCCGAATAAT-T-TCACCGGCATAATA
*
80324516 GTCTGCTAGGCTC-AAAGGCCCGAATA
1 GCCTGCTAGGCTCGAAAGGCCCGAATA
80324542 TAATACCAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
43 14 0.22
44 4 0.06
45 22 0.34
46 25 0.38
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (44 bp):
GCCTGCTAGGCTCGAAAGGCCCGAATAATTTCACCGGCATAATA
Found at i:80324590 original size:38 final size:38
Alignment explanation
Indices: 80324534--80324732 Score: 335
Period size: 38 Copynumber: 5.2 Consensus size: 38
80324524 GGCTCAAAGG
* * * *
80324534 CCCGAATATAATACCAGCACTAGGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
80324572 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
80324610 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
80324648 CCCGGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
80324686 CCCGGATATAATACTAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
80324724 CCCGGATAT
1 CCCGGATAT
80324733 CATATTTCGA
Statistics
Matches: 152, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 152 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:80341771 original size:39 final size:40
Alignment explanation
Indices: 80341593--80341775 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
80341583 CCGCACCAAG
* * * * * * * *
80341593 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
80341633 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
80341673 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
80341713 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
80341752 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
80341776 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:80349579 original size:39 final size:40
Alignment explanation
Indices: 80349403--80349583 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
80349393 CCGCACCAAG
* * * * * * * *
80349403 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
80349443 GCCTTCGGGTCTTAGCCCGG--ATAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
80349481 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
80349521 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
80349560 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
80349584 CATTCAATTT
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
38 32 0.27
39 33 0.28
40 55 0.46
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:80357461 original size:39 final size:40
Alignment explanation
Indices: 80357283--80357465 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
80357273 CCGCACCAAG
* * * * * * * *
80357283 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
80357323 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
80357363 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
80357403 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
80357442 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
80357466 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:80363608 original size:27 final size:27
Alignment explanation
Indices: 80363568--80363672 Score: 77
Period size: 28 Copynumber: 3.8 Consensus size: 27
80363558 CCTTTCATGA
* * * *
80363568 ATTGCCATAGAGGCTTTTCATTCCAGAG
1 ATTGCCACAAAGGC-TTCCATTACAGAG
* *
80363596 ATTGCCAC-AAGGCTTCCTTTGTCAGAG
1 ATTGCCACAAAGGCTTCCATT-ACAGAG
* * *
80363623 GTTGCCACAAAGGCTTTCTTTACAGAGG
1 ATTGCCACAAAGGCTTCCATTACAGA-G
*
80363651 TTTGCCACAAAGGCTTTCCATT
1 ATTGCCACAAAGGC-TTCCATT
80363673 TAGAGGTTCT
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
26 5 0.08
27 20 0.32
28 32 0.52
29 5 0.08
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (27 bp):
ATTGCCACAAAGGCTTCCATTACAGAG
Found at i:80363655 original size:28 final size:27
Alignment explanation
Indices: 80363597--80363860 Score: 180
Period size: 28 Copynumber: 9.4 Consensus size: 27
80363587 ATTCCAGAGA
*
80363597 TTGCCAC-AAGGCTTCCTTTGTCAGAGG-
1 TTGCCACAAAGGCTTTC-TT-TCAGAGGT
80363624 TTGCCACAAAGGCTTTCTTTACAGAGGT
1 TTGCCACAAAGGCTTTCTTT-CAGAGGT
80363652 TTGCCACAAAGGCTTTCCATTT-AGAGGT
1 TTGCCACAAAGGCTTT-C-TTTCAGAGGT
* * *
80363680 TCT-ACAAAAAGGCTCTCCTTTGCAGAGGT
1 T-TGCCACAAAGGCT-TTCTTT-CAGAGGT
*
80363709 TCGCCACAAAGGCTTTTCATTTCAGAGGT
1 TTGCCACAAAGGC-TTTC-TTTCAGAGGT
** * *
80363738 TCACCATAAAGGATTTCCTTTCAGAGGT
1 TTGCCACAAAGGCTTT-CTTTCAGAGGT
** * *
80363766 TCACCACTAAA-GCTCTCCTTTTTAGAGGT
1 TTGCCAC-AAAGGCT-TTC-TTTCAGAGGT
* **
80363795 TTGCCACAAAGGCTCTCTTTGGGA-GT
1 TTGCCACAAAGGCTTTCTTTCAGAGGT
*
80363821 TTGCCACAAAGGCTTTCCTTTTAGAGGT
1 TTGCCACAAAGGCTTT-CTTTCAGAGGT
* *
80363849 TTTCCATAAAGG
1 TTGCCACAAAGG
80363861 TTCTCATTTG
Statistics
Matches: 192, Mismatches: 26, Indels: 37
0.75 0.10 0.15
Matches are distributed among these distances:
26 18 0.09
27 29 0.15
28 79 0.41
29 59 0.31
30 7 0.04
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (27 bp):
TTGCCACAAAGGCTTTCTTTCAGAGGT
Found at i:80363716 original size:57 final size:57
Alignment explanation
Indices: 80363631--80363849 Score: 202
Period size: 57 Copynumber: 3.9 Consensus size: 57
80363621 AGGTTGCCAC
* * *
80363631 AAAGGCT-TTCTTTACAGAGGTTTGCCACAAAGGCTTTCCATTTAGAGGTTCTACAA
1 AAAGGCTCTCCTTTGCAGAGGTTCGCCACAAAGGCTTTCCATTTAGAGGTTCTACAA
* *
80363687 AAAGGCTCTCCTTTGCAGAGGTTCGCCACAAAGGCTTTTCATTTCAGAGGTTC-ACCAT
1 AAAGGCTCTCCTTTGCAGAGGTTCGCCACAAAGGCTTTCCATTT-AGAGGTTCTA-CAA
* * * * * * *
80363745 AAAGGATTTCCTTT-CAGAGGTTCACCACTAAA-GCTCTCCTTTTTAGAGGTT-TGCCAC
1 AAAGGCTCTCCTTTGCAGAGGTTCGCCAC-AAAGGCTTTCC-ATTTAGAGGTTCT-ACAA
* * *
80363802 AAAGGCTCT-CTTTG-GGA-GTTTGCCACAAAGGCTTTCCTTTTAGAGGTT
1 AAAGGCTCTCCTTTGCAGAGGTTCGCCACAAAGGCTTTCCATTTAGAGGTT
80363850 TTCCATAAAG
Statistics
Matches: 135, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
54 14 0.10
55 13 0.10
56 13 0.10
57 67 0.50
58 28 0.21
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (57 bp):
AAAGGCTCTCCTTTGCAGAGGTTCGCCACAAAGGCTTTCCATTTAGAGGTTCTACAA
Found at i:80363764 original size:86 final size:86
Alignment explanation
Indices: 80363604--80363808 Score: 244
Period size: 86 Copynumber: 2.4 Consensus size: 86
80363594 AGATTGCCAC
** *
80363604 AAGGCT-TCCTTTGTCAGAGGTTGCCACAAAGGC-TTTCTTTACAGAGGTTTGCCACAAAGGCTT
1 AAGGCTCTCCTTTG-CAGAGGTTGCCACAAAGGCTTTTCTTTACAGAGGTTCACCACAAAGGATT
80363667 TCCATTTAGAGGTTCTA-CA-AA
65 TCCATTTAGAGGTTC-ACCACAA
*
80363688 AAGGCTCTCCTTTGCAGAGGTTCGCCACAAAGGCTTTTCATTT-CAGAGGTTCACCATAAAGGAT
1 AAGGCTCTCCTTTGCAGAGGTT-GCCACAAAGGCTTTTC-TTTACAGAGGTTCACCACAAAGGAT
*
80363752 TTCC-TTTCAGAGGTTCACCACTA
64 TTCCATTT-AGAGGTTCACCACAA
**
80363775 AA-GCTCTCCTTTTTAGAGGTTTGCCACAAAGGCT
1 AAGGCTCTCCTTTGCAGAGG-TTGCCACAAAGGCT
80363809 CTCTTTGGGA
Statistics
Matches: 106, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
84 14 0.13
85 22 0.21
86 62 0.58
87 8 0.08
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (86 bp):
AAGGCTCTCCTTTGCAGAGGTTGCCACAAAGGCTTTTCTTTACAGAGGTTCACCACAAAGGATTT
CCATTTAGAGGTTCACCACAA
Found at i:80366349 original size:43 final size:42
Alignment explanation
Indices: 80366206--80366350 Score: 168
Period size: 43 Copynumber: 3.4 Consensus size: 42
80366196 GCACCAATAT
* * *
80366206 AGAACATGACCTTTAGTGGT-TTTCTCACAAAAACGCCGCTACA
1 AGAACATGACCTTTAGCGGTCTTTC-CCCACAAACGCCGCTA-A
* * * *
80366249 A-AACATGACCTTTAACGGCGCTTTCCCCACAAACACTGCTAA
1 AGAACATGACCTTTAGCGG-TCTTTCCCCACAAACGCCGCTAA
*
80366291 AGGACATGACCTTTAGCGGTACTTTCCCCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGT-CTTTCCCCACAAACGCCGCTAA
80366334 AGAACATGACCTTTAGC
1 AGAACATGACCTTTAGC
80366351 AACGCTTTTC
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
42 17 0.20
43 64 0.75
44 4 0.05
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.23
Consensus pattern (42 bp):
AGAACATGACCTTTAGCGGTCTTTCCCCACAAACGCCGCTAA
Found at i:80366369 original size:43 final size:43
Alignment explanation
Indices: 80366206--80366378 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
80366196 GCACCAATAT
* * *
80366206 AGAACATGACCTTTAG-TG-GTTTTCTCACAAAAACGCCGCTACA
1 AGAACATGACCTTTAGCGGCGCTTTC-CCCAAAAACGCCGCTA-A
* * * *
80366249 A-AACATGACCTTTAACGGCGCTTTCCCCACAAACACTGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAA
* ** *
80366291 AGGACATGACCTTTAGCGGTACTTTCCCCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAA
** * **
80366334 AGAACATGACCTTTAGCAACGCTTTTCCCAAAAACGTGGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAA
80366377 AG
1 AG
80366379 GTCTTGCTCT
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
42 15 0.14
43 85 0.81
44 5 0.05
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAA
Found at i:80366395 original size:86 final size:86
Alignment explanation
Indices: 80366209--80366368 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 86
80366199 CCAATATAGA
* * * **
80366209 ACATGACCTTTAGTGGT--TTTCTCACAAAAACGCCGCTACAAAACATGACCTTTAACGGCGCTT
1 ACATGACCTTTAGCGGTACTTTC-CCCACAAACGCCGCTACAAAACATGACCTTTAACAACGCTT
80366272 TCCCCACAAACACTGCTAAAGG
65 TCCCCACAAACACTGCTAAAGG
*
80366294 ACATGACCTTTAGCGGTACTTTCCCCACAAACGCCGCTA-AAGAACATGACCTTTAGCAACGCTT
1 ACATGACCTTTAGCGGTACTTTCCCCACAAACGCCGCTACAA-AACATGACCTTTAACAACGCTT
* *
80366358 TTCCCAAAAAC
65 TCCCCACAAAC
80366369 GTGGCTAAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 18 0.28
86 42 0.66
87 4 0.06
ACGTcount: A:0.32, C:0.31, G:0.14, T:0.23
Consensus pattern (86 bp):
ACATGACCTTTAGCGGTACTTTCCCCACAAACGCCGCTACAAAACATGACCTTTAACAACGCTTT
CCCCACAAACACTGCTAAAGG
Found at i:80368529 original size:42 final size:42
Alignment explanation
Indices: 80368335--80368530 Score: 153
Period size: 42 Copynumber: 4.5 Consensus size: 42
80368325 TAAGATGCCA
* * *
80368335 ATGCCATATTCCA-ATTATGGTCTTACATGGGATCACATGTCG
1 ATGCCATATCCCAGA-TATGGTCTTACACGGGATCACATATCG
* * * *
80368377 ATGCCAATAGCCCAGCTATGGTCTTACACGATG-TCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACG-GGATCACATATCG
* * * *** *
80368420 ATACCATGTCCCAGACATGGTCTTACACAAAATCACATATTAATGCCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCAC--A-T-AT--CG
*
80368468 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCACATATCG
*
80368510 AGGCCATATCCCAGATATGGT
1 ATGCCATATCCCAGATATGGT
80368531 TTTAAACGAA
Statistics
Matches: 118, Mismatches: 26, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
42 48 0.41
43 31 0.26
44 4 0.03
45 2 0.02
46 3 0.03
48 30 0.25
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGGGATCACATATCG
Found at i:80371561 original size:26 final size:26
Alignment explanation
Indices: 80371504--80371563 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
80371494 GCCCCGATAT
80371504 ATGGCTCTTTGTGAGCTTCTAGACTA
1 ATGGCTCTTTGTGAGCTTCTAGACTA
* *
80371530 AAGGCTCTTTGTGAGCTTCCTA-ATTA
1 ATGGCTCTTTGTGAGCTT-CTAGACTA
80371556 ATGGCTCT
1 ATGGCTCT
80371564 CCGGAGCTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 27 0.90
27 3 0.10
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (26 bp):
ATGGCTCTTTGTGAGCTTCTAGACTA
Found at i:80373010 original size:93 final size:93
Alignment explanation
Indices: 80372851--80373021 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
80372841 GGATGGTTGA
* * * *
80372851 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80372916 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
80372944 GCATCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80373009 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80373022 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:80373026 original size:46 final size:45
Alignment explanation
Indices: 80372855--80373029 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
80372845 GGTTGAGCAT
* * *
80372855 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AGGC
*** * * *
80372901 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAGGC
* * *
80372946 ATCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAG-GC
*
80372994 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80373030 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.65
47 32 0.31
48 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGGC
Found at i:80376350 original size:24 final size:24
Alignment explanation
Indices: 80376333--80376433 Score: 202
Period size: 24 Copynumber: 4.2 Consensus size: 24
80376323 TCGCGCCCAC
80376333 AGTGCCATAGTAAATCGCACACAT
1 AGTGCCATAGTAAATCGCACACAT
80376357 AGTGCCATAGTAAATCGCACACAT
1 AGTGCCATAGTAAATCGCACACAT
80376381 AGTGCCATAGTAAATCGCACACAT
1 AGTGCCATAGTAAATCGCACACAT
80376405 AGTGCCATAGTAAATCGCACACAT
1 AGTGCCATAGTAAATCGCACACAT
80376429 AGTGC
1 AGTGC
80376434 ATTTGAGATT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 77 1.00
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
AGTGCCATAGTAAATCGCACACAT
Found at i:80383215 original size:41 final size:39
Alignment explanation
Indices: 80383082--80383214 Score: 144
Period size: 40 Copynumber: 3.3 Consensus size: 39
80383072 CTTTGCAGCG
** *
80383082 TTTTTCTCATAACGCTACTAATGCTTGACCTTTTGCGGCA
1 TTTTTCTCATAA-GCCGCTAATGCTTGACCTTTTGCGGTA
* *
80383122 TTTTTCTCAT-AGCACAGCTAATGCTTGACCTTTTGTGGTG
1 TTTTTCTCATAAGC-C-GCTAATGCTTGACCTTTTGCGGTA
*
80383162 TTTTTCTCATAAATGCCGCTAATGCTTAACCTTTTG-GAGTA
1 TTTTTCTCAT-AA-GCCGCTAATGCTTGACCTTTTGCG-GTA
80383203 TTTTTCTCATAA
1 TTTTTCTCATAA
80383215 ACGTTGCTAC
Statistics
Matches: 80, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.03
39 1 0.01
40 43 0.54
41 30 0.38
42 2 0.03
43 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (39 bp):
TTTTTCTCATAAGCCGCTAATGCTTGACCTTTTGCGGTA
Found at i:80383229 original size:41 final size:41
Alignment explanation
Indices: 80383082--80383247 Score: 167
Period size: 41 Copynumber: 4.1 Consensus size: 41
80383072 CTTTGCAGCG
* *
80383082 TTTTTCTCAT-AACGCTACTAATGCTTGACCTTTTGCGGCA
1 TTTTTCTCATAAACGCTGCTAATGCTTGACCTTTTGCGGTA
* * * * *
80383122 TTTTTCTCAT-AGCACAGCTAATGCTTGACCTTTTGTGGTG
1 TTTTTCTCATAAACGCTGCTAATGCTTGACCTTTTGCGGTA
* * *
80383162 TTTTTCTCATAAATGCCGCTAATGCTTAACCTTTTG-GAGTA
1 TTTTTCTCATAAACGCTGCTAATGCTTGACCTTTTGCG-GTA
* * * * *
80383203 TTTTTCTCATAAACGTTGCTACTGCTTTACCTATTGCGGCA
1 TTTTTCTCATAAACGCTGCTAATGCTTGACCTTTTGCGGTA
80383244 TTTT
1 TTTT
80383248 CCATTAGTGC
Statistics
Matches: 103, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
40 44 0.43
41 58 0.56
42 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.43
Consensus pattern (41 bp):
TTTTTCTCATAAACGCTGCTAATGCTTGACCTTTTGCGGTA
Found at i:80392478 original size:46 final size:46
Alignment explanation
Indices: 80392428--80392603 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
80392418 TGGTTGAGCA
*
80392428 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
80392474 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
80392521 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
80392567 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80392604 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 71 0.67
47 35 0.33
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:80392584 original size:93 final size:93
Alignment explanation
Indices: 80392425--80392596 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
80392415 GGATGGTTGA
* *
80392425 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80392490 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
80392518 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80392583 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80392597 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:80395576 original size:15 final size:15
Alignment explanation
Indices: 80395537--80395616 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80395527 GTATCTTGGG
*
80395537 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
80395552 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
80395567 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
80395582 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
80395597 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
80395611 TTTCTT
1 TTTCTT
80395617 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80395606 original size:30 final size:30
Alignment explanation
Indices: 80395528--80395615 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
80395518 CATAGTATCG
* * *
80395528 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
80395558 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
80395588 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
80395616 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:80398160 original size:46 final size:45
Alignment explanation
Indices: 80398001--80398174 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
80397991 GGTTGAGCAT
* *
80398001 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
*** * * * *
80398046 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAACGC
*
80398091 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
* *
80398139 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80398175 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
45 31 0.29
46 45 0.42
47 28 0.26
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:80402026 original size:10 final size:10
Alignment explanation
Indices: 80402011--80402039 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
80402001 ATTTCGTGTT
80402011 TGAATAGAAA
1 TGAATAGAAA
80402021 TGAATAG-AA
1 TGAATAGAAA
80402030 TGAATAGAAA
1 TGAATAGAAA
80402040 AAATGGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:80408474 original size:36 final size:36
Alignment explanation
Indices: 80408423--80408600 Score: 171
Period size: 36 Copynumber: 5.0 Consensus size: 36
80408413 TCCTCTGGGA
*
80408423 CTTCAGCCTTGTCTTCATGTGCACGTCAAGGTTGAT
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGAT
* * * ***
80408459 CTTCAGCCTCATCTTCATGTCCATGTTGGGGTTGAT
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGAT
* * * *
80408495 CTTCGGCCTCATC-TCATGTACACGTTGAA-GTTGAT
1 CTTCAGCCTCGTCTTCATGTGCACG-TCAAGGTTGAT
* *
80408530 CTTCAGCCTCGTCTTCATGTGCATGTCAGGGTTGAT
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGAT
* * * * *
80408566 GTTCGGTCTCGTCTTCATATGCACGTCGAGGTTGA
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGA
80408601 ACGGTGACCT
Statistics
Matches: 113, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
35 28 0.25
36 85 0.75
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.36
Consensus pattern (36 bp):
CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGAT
Found at i:80408612 original size:107 final size:107
Alignment explanation
Indices: 80408423--80408616 Score: 237
Period size: 107 Copynumber: 1.8 Consensus size: 107
80408413 TCCTCTGGGA
* * * * *
80408423 CTTCAGCCTTGTCTTCATGTGCACGTCAAGGTTGATCTTCAGCCTCATCTTCATGTCCATGTTGG
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGATCTTCAGCCTCATCTTCATATCCACGTCGA
* * *
80408488 GGTTGATCTTCGGCCTCATCTCATGTACACGTTGAAGTTGAT
66 GGTTGAACGTCGACCTCATCTCATGTACACGTTGAAGTTGAT
* * * * * * *
80408530 CTTCAGCCTCGTCTTCATGTGCATGTCAGGGTTGATGTTCGGTCTCGTCTTCATATGCACGTCGA
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGATCTTCAGCCTCATCTTCATATCCACGTCGA
80408595 GGTTGAACGGT-GACCTCATCTC
66 GGTTGAAC-GTCGACCTCATCTC
80408617 CTCCCTCCGT
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
107 70 0.99
108 1 0.01
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (107 bp):
CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGATCTTCAGCCTCATCTTCATATCCACGTCGA
GGTTGAACGTCGACCTCATCTCATGTACACGTTGAAGTTGAT
Found at i:80420591 original size:3 final size:3
Alignment explanation
Indices: 80420583--80420611 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
80420573 CATTTACCAA
80420583 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
80420612 ATAACTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:80424961 original size:2 final size:2
Alignment explanation
Indices: 80424954--80424991 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
80424944 ACCTTTAAAT
80424954 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80424992 AATCGAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80428381 original size:2 final size:2
Alignment explanation
Indices: 80428335--80428367 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
80428325 TTTTAAAAGT
*
80428335 TA TA TA TA TC TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80428368 TTTAATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80431131 original size:21 final size:21
Alignment explanation
Indices: 80431090--80431140 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
80431080 TATCGATTCA
* *
80431090 GTATCGATA-ATTTTCTTAAG
1 GTATCGATATATTTCCTAAAG
80431110 GTATCGATATATTTCCTAAAG
1 GTATCGATATATTTCCTAAAG
*
80431131 GTATAGATAT
1 GTATCGATAT
80431141 TCCTACTCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (21 bp):
GTATCGATATATTTCCTAAAG
Found at i:80433691 original size:21 final size:21
Alignment explanation
Indices: 80433667--80433723 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
80433657 TCCAACGACT
* *
80433667 GTGGTCGATGATGGCCCAATG
1 GTGGTCGACGATGACCCAATG
* *
80433688 GTGGTCAACAATGACCCAATG
1 GTGGTCGACGATGACCCAATG
*
80433709 GTAGTCGACGATGAC
1 GTGGTCGACGATGAC
80433724 AGTGACGTGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (21 bp):
GTGGTCGACGATGACCCAATG
Found at i:80436800 original size:9 final size:9
Alignment explanation
Indices: 80436786--80436810 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
80436776 CCAGCTTACA
80436786 AATGTTTTC
1 AATGTTTTC
80436795 AATGTTTTC
1 AATGTTTTC
80436804 AATGTTT
1 AATGTTT
80436811 AATGTAAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.56
Consensus pattern (9 bp):
AATGTTTTC
Found at i:80439352 original size:40 final size:40
Alignment explanation
Indices: 80439224--80439344 Score: 143
Period size: 40 Copynumber: 3.0 Consensus size: 40
80439214 GCTTGTACGG
* * * *
80439224 GTTTGTACTTTGATGCCTCTAATTGCACAATCATACCTCT
1 GTTTGCACTTTGATGCCTCTAATTGCAAAATCGTGCCTCT
* * * *
80439264 GTTTGCACTTTGGTGCCTCTAATTGTAAAATTGTGCCCCT
1 GTTTGCACTTTGATGCCTCTAATTGCAAAATCGTGCCTCT
* * *
80439304 GTTTGCACTTCGATACCTCTAATTGCATAATCGTGCCTCT
1 GTTTGCACTTTGATGCCTCTAATTGCAAAATCGTGCCTCT
80439344 G
1 G
80439345 ATAGCACTAC
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.39
Consensus pattern (40 bp):
GTTTGCACTTTGATGCCTCTAATTGCAAAATCGTGCCTCT
Found at i:80446558 original size:24 final size:26
Alignment explanation
Indices: 80446529--80446577 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
80446519 CTTGTTTTAA
* *
80446529 TATTTG-TTT-TTATGTTTTTAAATG
1 TATTTGATTTATTATATTTTAAAATG
80446553 TATTTGATTTATTATATTTTAAAAT
1 TATTTGATTTATTATATTTTAAAAT
80446578 TTTTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (26 bp):
TATTTGATTTATTATATTTTAAAATG
Found at i:80448570 original size:9 final size:9
Alignment explanation
Indices: 80448558--80448674 Score: 56
Period size: 10 Copynumber: 12.4 Consensus size: 9
80448548 AAAAACCAAT
80448558 AAAAATATA
1 AAAAATATA
*
80448567 AAAATTATTA
1 AAAAATA-TA
*
80448577 AAAATCTATA
1 AAAA-ATATA
80448587 AAAAATA-A
1 AAAAATATA
*
80448595 AAAAATATT
1 AAAAATATA
* ** *
80448604 TAATTTAGA
1 AAAAATATA
*
80448613 TAAAATTATA
1 -AAAAATATA
* *
80448623 AGAATTATTA
1 AAAAATA-TA
*
80448633 AAAATATATC
1 AAAA-ATATA
* *
80448643 AAAATTATT
1 AAAAATATA
80448652 AAAAATATA
1 AAAAATATA
80448661 AAAAATCATA
1 AAAAAT-ATA
80448671 AAAA
1 AAAA
80448675 TTTTTCTTGT
Statistics
Matches: 81, Mismatches: 20, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
8 8 0.10
9 34 0.42
10 35 0.43
11 4 0.05
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAAATATA
Found at i:80448586 original size:20 final size:19
Alignment explanation
Indices: 80448558--80448675 Score: 84
Period size: 20 Copynumber: 6.3 Consensus size: 19
80448548 AAAAACCAAT
80448558 AAAA-ATATAAAAATTATTA
1 AAAATATATAAAAATTA-TA
*
80448577 AAAATCTATAAAAA--ATA
1 AAAATATATAAAAATTATA
* ** * *
80448594 AAAAAATATTTAATTTAGA
1 AAAATATATAAAAATTATA
*
80448613 TAAAAT-TATAAGAATTATTA
1 -AAAATATATAAAAATTA-TA
*
80448633 AAAATATATCAAAATTATTA
1 AAAATATATAAAAATTA-TA
*
80448653 AAAATATA-AAAAATCATA
1 AAAATATATAAAAATTATA
80448671 AAAAT
1 AAAAT
80448676 TTTTCTTGTA
Statistics
Matches: 76, Mismatches: 17, Indels: 13
0.72 0.16 0.12
Matches are distributed among these distances:
17 11 0.14
18 8 0.11
19 24 0.32
20 33 0.43
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAATATATAAAAATTATA
Found at i:80449028 original size:468 final size:467
Alignment explanation
Indices: 80448304--80449184 Score: 1224
Period size: 468 Copynumber: 1.9 Consensus size: 467
80448294 GGCTTTGGTA
* * *
80448304 AATGAGCTTTTTTATTAATATTTTTTAAAATATTGTATATTATTTTCTTTCATTAAAGTTAGTCA
1 AATGAGCTTTTCTATTAATATTTTTCAAAATATTGTATATTATTCTCTTTCATTAAAGTTAGTCA
* * *
80448369 TTTAGCATATTTAGGTACTTGAACTTTCAAAATACATAAAAAAAATTTGACTATTAAATTTAACG
66 TTTAGCATATTTAGGTACTTGAACTGTAAAAATACATAAAAAAAATTTGACTATTAAACTTAACG
* * *
80448434 GTCAATTATTAAATTTACGGGCTCCTAAATTTTTTCTTTTTCAATTAACTCTGCCACGTGTCACA
131 GTCAATCATTAAATTTACGGGCT-CTAAATTTTTTCTTTTTCAATTAACCCCGCCACGTGTCACA
* * *
80448499 AGGTGCCACACCTTAGTTGTAACATGTGGCGAAAAAAATGATAAACTTAAAAAACCAATAAAAA-
195 ACGTACCACACCTTAGTTGTAACATGTGACGAAAAAAATGATAAACTTAAAAAACCAATAAAAAT
*
80448563 TATAAAAATTATTAAAAATCTAT-AAAAAATAAAAAAATATTTAATTTAGATAAAATTATAAGAA
260 TATAAAAA-TA-TAAAAATATATAAAAAAATAAAAAAATATTTAATTTAGATAAAATTATAAGAA
* *
80448627 TTATTAAAAATATATCAAAATTATTA-AAAATAT-AAAAAATCATAAAAATTTTTCTTGTAAATA
323 TTATTAAAAATATATCAAAATTATTATAAAATATAAAAAAATCATAAAAATTTTCCTTATAAATA
* ** *
80448690 TATTTTATTACATTTTTATAAAATTTAAAGTTATTATCTCTGTGAATTTGGTTTGGGGGCTGCTA
388 TACTTTACCAAATTTTTATAAAATTTAAAGTTATTATCTCTGTGAATTTGGTTTGGGGGCTGCTA
80448755 GTTAAAGAAAAAGTG
453 GTTAAAGAAAAAGTG
* * *
80448770 AATGAGCTTTTCTATTAATATTTTTCAAAATATTTTGTATTATTCTCTTTC-TTAAAATGTTGGT
1 AATGAGCTTTTCTATTAATATTTTTCAAAATATTGTATATTATTCTCTTTCATT-AAA-GTTAGT
* ** ** *
80448834 TATTTAGCATATTTAGGTACTTGAACTGTAAAAATGTATTAAAAAATTCTTTTGA-TCATTAACC
64 CATTTAGCATATTTAGGTACTTGAACTGTAAAAATACA-TAAAAAA--AATTTGACT-ATTAAAC
* *
80448898 TTAAC-GTCAATCATTAAATTTACCGGGCT-TCAATTTTTTCTTTTTTCAATTAACCCCGCCATG
125 TTAACGGTCAATCATTAAATTTA-CGGGCTCTAAATTTTTTC-TTTTTCAATTAACCCCGCCACG
* * * * *
80448961 TGTCACAACCG-ACCACACGTTGGTTGTGACATGTGAC-AAAAAAATGATCAACTTAAAAAATCA
188 TGTCACAA-CGTACCACACCTTAGTTGTAACATGTGACGAAAAAAATGATAAACTTAAAAAACCA
* *
80449024 ATAAAAATTATAAAAATATAAAAATATATAAAAAAATAGAAAAGTATTTAATTTAGATAAAATTA
252 ATAAAAATTATAAAAATATAAAAATATATAAAAAAATAAAAAAATATTTAATTTAGATAAAATTA
*
80449089 TAAGAATTATTAAAAATATATCAAAATTATTATAAAATATAAAAAAAATCATAAAAGTTTTCCTT
317 TAAGAATTATTAAAAATATATCAAAATTATTATAAAATAT-AAAAAAATCATAAAAATTTTCCTT
*
80449154 ATAAATGTACTTTACCAAATTTTTATAAAAT
381 ATAAATATACTTTACCAAATTTTTATAAAAT
80449185 AATCCCCACC
Statistics
Matches: 362, Mismatches: 39, Indels: 23
0.85 0.09 0.05
Matches are distributed among these distances:
465 2 0.01
466 49 0.14
467 48 0.13
468 115 0.32
469 80 0.22
470 22 0.06
471 46 0.13
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.38
Consensus pattern (467 bp):
AATGAGCTTTTCTATTAATATTTTTCAAAATATTGTATATTATTCTCTTTCATTAAAGTTAGTCA
TTTAGCATATTTAGGTACTTGAACTGTAAAAATACATAAAAAAAATTTGACTATTAAACTTAACG
GTCAATCATTAAATTTACGGGCTCTAAATTTTTTCTTTTTCAATTAACCCCGCCACGTGTCACAA
CGTACCACACCTTAGTTGTAACATGTGACGAAAAAAATGATAAACTTAAAAAACCAATAAAAATT
ATAAAAATATAAAAATATATAAAAAAATAAAAAAATATTTAATTTAGATAAAATTATAAGAATTA
TTAAAAATATATCAAAATTATTATAAAATATAAAAAAATCATAAAAATTTTCCTTATAAATATAC
TTTACCAAATTTTTATAAAATTTAAAGTTATTATCTCTGTGAATTTGGTTTGGGGGCTGCTAGTT
AAAGAAAAAGTG
Found at i:80449031 original size:10 final size:9
Alignment explanation
Indices: 80449016--80449066 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
80449006 GATCAACTTA
80449016 AAAAATCAAT
1 AAAAAT-AAT
*
80449026 AAAAATTAT
1 AAAAATAAT
80449035 AAAAAT-AT
1 AAAAATAAT
80449043 AAAAATATAT
1 AAAAATA-AT
80449053 AAAAA-AAT
1 AAAAATAAT
80449061 AGAAAA
1 A-AAAA
80449067 GTATTTAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
8 11 0.30
9 13 0.35
10 13 0.35
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (9 bp):
AAAAATAAT
Found at i:80449134 original size:20 final size:21
Alignment explanation
Indices: 80449080--80449135 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 21
80449070 TTTAATTTAG
*
80449080 ATAAAAT-TATAAGAATTATT
1 ATAAAATATATAAAAATTATT
*
80449100 A-AAAATATATCAAAATTATT
1 ATAAAATATATAAAAATTATT
*
80449120 ATAAAATATAAAAAAA
1 ATAAAATATATAAAAA
80449136 ATCATAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 5 0.17
20 13 0.43
21 12 0.40
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
ATAAAATATATAAAAATTATT
Found at i:80449216 original size:46 final size:46
Alignment explanation
Indices: 80449163--80449250 Score: 149
Period size: 46 Copynumber: 1.9 Consensus size: 46
80449153 TATAAATGTA
*
80449163 CTTTACCAAATTTTTATAAAATAATCCCCACCATGTGGTTGTTGTG
1 CTTTACCAAATTTTAATAAAATAATCCCCACCATGTGGTTGTTGTG
* *
80449209 CTTTACCAAATTTTAATAAAATTATCCCCATCATGTGGTTGT
1 CTTTACCAAATTTTAATAAAATAATCCCCACCATGTGGTTGT
80449251 GCATTTGGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (46 bp):
CTTTACCAAATTTTAATAAAATAATCCCCACCATGTGGTTGTTGTG
Found at i:80449537 original size:17 final size:18
Alignment explanation
Indices: 80449518--80449623 Score: 67
Period size: 18 Copynumber: 5.8 Consensus size: 18
80449508 AAAATCAATA
80449518 AAAATTATAAAAATATA-
1 AAAATTATAAAAATATAT
*
80449535 AAAATTTATAAAAA-ATAG
1 AAAA-TTATAAAAATATAT
* * ** *
80449553 AAAAGTATTTAATTTAGAT
1 AAAATTA-TAAAAATATAT
*
80449572 AAAATTATAAAATTAT-T
1 AAAATTATAAAAATATAT
80449589 AAAAATATATCAAAAATATTAT
1 -AAAAT-TAT-AAAAATA-TAT
80449611 AAAA-TATAAAAAT
1 AAAATTATAAAAAT
80449624 TTCATAAAAG
Statistics
Matches: 69, Mismatches: 11, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
17 10 0.14
18 33 0.48
19 14 0.20
20 6 0.09
21 5 0.07
22 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (18 bp):
AAAATTATAAAAATATAT
Found at i:80449537 original size:27 final size:28
Alignment explanation
Indices: 80449507--80449624 Score: 75
Period size: 27 Copynumber: 4.2 Consensus size: 28
80449497 ATCAACTTAA
*
80449507 AAAAATCA-ATAAAAATTATAAAAATAT
1 AAAAATTAGATAAAAATTATAAAAATAT
* * * *
80449534 AAAAATT-TATAAAAAATAGAAAAGTAT
1 AAAAATTAGATAAAAATTATAAAAATAT
** * *
80449561 TTAATTTAGAT-AAAATTATAAAATTATT
1 AAAAATTAGATAAAAATTATAAAAATA-T
*
80449589 AAAAA-TATATCAAAAA-TATTATAAAATAT
1 AAAAATTAGAT-AAAAATTA-TA-AAAATAT
80449618 AAAAATT
1 AAAAATT
80449625 TCATAAAAGT
Statistics
Matches: 67, Mismatches: 16, Indels: 13
0.70 0.17 0.14
Matches are distributed among these distances:
27 42 0.63
28 7 0.10
29 12 0.18
30 6 0.09
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (28 bp):
AAAAATTAGATAAAAATTATAAAAATAT
Found at i:80449544 original size:10 final size:9
Alignment explanation
Indices: 80449515--80449624 Score: 61
Period size: 10 Copynumber: 12.0 Consensus size: 9
80449505 AAAAAAATCA
80449515 ATAAAAATT
1 ATAAAAATT
80449524 ATAAAAA-T
1 ATAAAAATT
80449532 ATAAAAATTT
1 ATAAAAA-TT
80449542 ATAAAAA--
1 ATAAAAATT
*
80449549 ATAGAAAAGT
1 ATA-AAAATT
** *
80449559 ATTTAATTT
1 ATAAAAATT
*
80449568 AGATAAAATT
1 ATA-AAAATT
80449578 AT-AAAATT
1 ATAAAAATT
80449586 ATTAAAAATAT
1 A-TAAAAAT-T
80449597 ATCAAAAA-T
1 AT-AAAAATT
80449606 ATTATAAAA-T
1 A-TA-AAAATT
80449616 ATAAAAATT
1 ATAAAAATT
80449625 TCATAAAAGT
Statistics
Matches: 79, Mismatches: 9, Indels: 26
0.69 0.08 0.23
Matches are distributed among these distances:
7 3 0.04
8 23 0.29
9 18 0.23
10 28 0.35
11 7 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:80450273 original size:20 final size:21
Alignment explanation
Indices: 80450248--80450287 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80450238 CAATGCAAAC
*
80450248 AAGGGC-ACACGCCCGTGTGG
1 AAGGGCGACAAGCCCGTGTGG
*
80450268 AAGGGCGACAAGGCCGTGTG
1 AAGGGCGACAAGCCCGTGTG
80450288 TCCTCTTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.23, C:0.25, G:0.42, T:0.10
Consensus pattern (21 bp):
AAGGGCGACAAGCCCGTGTGG
Found at i:80451666 original size:48 final size:48
Alignment explanation
Indices: 80451491--80451872 Score: 433
Period size: 48 Copynumber: 7.9 Consensus size: 48
80451481 AAAGGGTAAG
* * *
80451491 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAG--CTCACATATCA
* * * * * *
80451541 GTGCCGATGGCATGTTCCAAACATGGTCTTATATTAGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * * * *
80451589 AGGCCAATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCATATTA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * *
80451636 ATGCCGATGCCATGTTCCAAACATAGTCTTACACTAGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * * * **
80451684 AGGTCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTTATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * *
80451732 ATGCCGATGCCATGTTCCAAACATAGTCTTACACTAGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * *
80451780 AGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATTA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
** * * *
80451828 ATGTAGATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
80451873 ACCCTAGTAT
Statistics
Matches: 273, Mismatches: 58, Indels: 4
0.81 0.17 0.01
Matches are distributed among these distances:
47 38 0.14
48 205 0.75
50 30 0.11
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
Found at i:80451739 original size:96 final size:96
Alignment explanation
Indices: 80451493--80451872 Score: 573
Period size: 96 Copynumber: 3.9 Consensus size: 96
80451483 AGGGTAAGAT
* * *
80451493 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAGTGCCGATGGCATGTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--ATATCAATGCCGATGCCATGTTC
* * *
80451558 CAAACATGGTCTTATATTAGCTCACATATCGAG
64 CAAACATAGTCTTACACTAGCTCACATATCGAG
* *
80451591 GCCAATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCATATTAATGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
80451655 AACATAGTCTTACACTAGCTCACATATCGAG
66 AACATAGTCTTACACTAGCTCACATATCGAG
* * *
80451686 GTCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTTATATCAATGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
80451751 AACATAGTCTTACACTAGCTCACATATCGAG
66 AACATAGTCTTACACTAGCTCACATATCGAG
* * **
80451782 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATTAATGTAGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
* * *
80451847 AATATGGTCTTACACTGGCTCACATA
66 AACATAGTCTTACACTAGCTCACATA
80451873 ACCCTAGTAT
Statistics
Matches: 258, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
95 55 0.21
96 166 0.64
97 31 0.12
98 6 0.02
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
AACATAGTCTTACACTAGCTCACATATCGAG
Found at i:80464308 original size:80 final size:80
Alignment explanation
Indices: 80464224--80464372 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80464214 TATGGTAACC
* * * *
80464224 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80464288 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80464304 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80464369 CCGG
66 CCGG
80464373 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Done.