Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 266 of 335
Found at i:80464314 original size:40 final size:38
Alignment explanation
Indices: 80464265--80464372 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80464255 ATCACGATTT
*
80464265 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80464305 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80464345 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80464373 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80470449 original size:40 final size:40
Alignment explanation
Indices: 80470390--80470483 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
80470380 GGCTGTCACA
* *
80470390 GGGTCTTAGCCCGGTTATAA-CAACTCA-CACGAATGCCTTC
1 GGGTCTTAGCCCGGATATAATC-ACT-AGCACAAATGCCTTC
*
80470430 GGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTC
1 GGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTC
*
80470470 GGGACTTAGCCCGG
1 GGGTCTTAGCCCGG
80470484 GTATCATTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
39 1 0.02
40 46 0.96
41 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
GGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTC
Found at i:80478353 original size:40 final size:41
Alignment explanation
Indices: 80478309--80478456 Score: 162
Period size: 40 Copynumber: 3.7 Consensus size: 41
80478299 ATAACCACAA
* *** *
80478309 GCACAATTGCCTTCGGGTCTTAACCCGGATT-TGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATTATAACAACTC
80478349 GCACAATTGCCTTCGGGTCTTAGCCCGG-TTATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATTATAACAACTC
*
80478389 GCACGAA-TGCCTTCGGGTCTTAGCCCGGA-TATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATTATAA-CAACTC
* * *
80478429 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
80478457 GTATCATTCA
Statistics
Matches: 95, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
39 4 0.04
40 88 0.93
41 3 0.03
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (41 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATTATAACAACTC
Found at i:80480356 original size:96 final size:96
Alignment explanation
Indices: 80480190--80480505 Score: 443
Period size: 96 Copynumber: 3.3 Consensus size: 96
80480180 GGCTATCACA
* * * * * **
80480190 TCCCAGACATAGTCTTACACTGGTTCTCATATATCAATACTGATTCCATGTTCCAAACATAGTCT
1 TCCCAGACATGGTCTTACACTAG--CTCTTATATCGATGCTGACGCCATGTTCCAAACATAGTCT
80480255 TACACTAGCTCATATATCGAGGTCGATGCCATG
64 TACACTAGCTCATATATCGAGGTCGATGCCATG
*
80480288 TCCCAGACATGGTCTTACACTAGCTCTTATATCGATGTTGACGCCATGTTCCAAACATAGTCTTA
1 TCCCAGACATGGTCTTACACTAGCTCTTATATCGATGCTGACGCCATGTTCCAAACATAGTCTTA
80480353 CACTAGCTCATATATCGAGGTCGATGCCATG
66 CACTAGCTCATATATCGAGGTCGATGCCATG
* *
80480384 TCCCAGACATGGTCTTACACTAGCTCTTATATCGATGCTGACGCCATGTTCCAAACATGGTTTTA
1 TCCCAGACATGGTCTTACACTAGCTCTTATATCGATGCTGACGCCATGTTCCAAACATAGTCTTA
* ** * *
80480449 CACTAGCTCACATATTAATGTCGATGTCATG
66 CACTAGCTCATATATCGAGGTCGATGCCATG
* * * *
80480480 TTCCAAACATGGTCTTATACTGGCTC
1 TCCCAGACATGGTCTTACACTAGCTC
80480506 ACATAACCCT
Statistics
Matches: 198, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
96 177 0.89
98 21 0.11
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (96 bp):
TCCCAGACATGGTCTTACACTAGCTCTTATATCGATGCTGACGCCATGTTCCAAACATAGTCTTA
CACTAGCTCATATATCGAGGTCGATGCCATG
Found at i:80480480 original size:144 final size:144
Alignment explanation
Indices: 80480196--80480506 Score: 367
Period size: 144 Copynumber: 2.1 Consensus size: 144
80480186 CACATCCCAG
* *
80480196 ACATAGTCTTACACTGGTTCTCATATATCAATACTGATTCCATGTTCCAAACATAGTCTTACACT
1 ACATAGTCTTACACTGG--CTCATATATCAATACTGATGCCATGTCCCAAACATAGTCTTACACT
* * * ** *
80480261 AGCTCATATATCGAGGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCGATGT
64 AGCTCATATATCGAGCTCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAATGT
*
80480326 TGACGCCATGTTCCAA
129 CGACGCCATGTTCCAA
* * * *
80480342 ACATAGTCTTACACTAGCTCATATATCGAGGT-C-GATGCCATGTCCCAGACATGGTCTTACACT
1 ACATAGTCTTACACTGGCTCATATATC-A-ATACTGATGCCATGTCCCAAACATAGTCTTACACT
* * * *
80480405 AGCTCTTATATCGATGCT-GACGCCATGTTCCAAACATGGTTTTACACTAGCTCACATATTAATG
64 AGCTCATATATCGA-GCTCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAATG
* *
80480469 TCGATGTCATGTTCCAA
128 TCGACGCCATGTTCCAA
* *
80480486 ACATGGTCTTATACTGGCTCA
1 ACATAGTCTTACACTGGCTCA
80480507 CATAACCCTA
Statistics
Matches: 140, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
144 119 0.85
145 4 0.03
146 17 0.12
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (144 bp):
ACATAGTCTTACACTGGCTCATATATCAATACTGATGCCATGTCCCAAACATAGTCTTACACTAG
CTCATATATCGAGCTCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAATGTCG
ACGCCATGTTCCAA
Found at i:80480510 original size:48 final size:48
Alignment explanation
Indices: 80480235--80480506 Score: 348
Period size: 48 Copynumber: 5.7 Consensus size: 48
80480225 AATACTGATT
* *
80480235 CCATGTTCCAAACATAGTCTTACACTAGCTCATATATCGAGGTCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGATGTCGATG
* * * * *
80480283 CCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCGATGTTGACG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGATGTCGATG
* *
80480331 CCATGTTCCAAACATAGTCTTACACTAGCTCATATATCGAGGTCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGATGTCGATG
* * * *
80480379 CCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCGATG-CTGACG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGATGTC-GATG
* * **
80480427 CCATGTTCCAAACATGGTTTTACACTAGCTCACATATTAATGTCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGATGTCGATG
* * *
80480475 TCATGTTCCAAACATGGTCTTATACTGGCTCA
1 CCATGTTCCAAACATGGTCTTACACTAGCTCA
80480507 CATAACCCTA
Statistics
Matches: 190, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
47 1 0.01
48 188 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (48 bp):
CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGATGTCGATG
Found at i:80484230 original size:42 final size:41
Alignment explanation
Indices: 80484174--80484284 Score: 161
Period size: 42 Copynumber: 2.6 Consensus size: 41
80484164 TAGGGTTACC
*
80484174 GAGACTTTGTGTAAGACCATATCTGGGATATGACATC-ATTAT
1 GAGA-TTTGTGTAAGACCATATCTGGGATATAACATCGA-TAT
80484216 GAGATTTCGTGTAAGACCATATCTGGGATATAACATCGATAT
1 GAGATTT-GTGTAAGACCATATCTGGGATATAACATCGATAT
*
80484258 GAGATTTTGTGTAAGACCATAGCTGGG
1 GAGA-TTTGTGTAAGACCATATCTGGG
80484285 CTATTGGCAT
Statistics
Matches: 64, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
41 3 0.05
42 57 0.89
43 4 0.06
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (41 bp):
GAGATTTGTGTAAGACCATATCTGGGATATAACATCGATAT
Found at i:80484625 original size:14 final size:14
Alignment explanation
Indices: 80484606--80484632 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80484596 GAGTTTAAAA
80484606 TGCTTATTATTTGT
1 TGCTTATTATTTGT
80484620 TGCTTATTATTTG
1 TGCTTATTATTTG
80484633 CATGGGAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.15, T:0.63
Consensus pattern (14 bp):
TGCTTATTATTTGT
Found at i:80485993 original size:20 final size:20
Alignment explanation
Indices: 80485955--80485994 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
80485945 TGAATTTTGA
*
80485955 GACTAAATTTTGGGAAGTTT
1 GACTAAATTTTAGGAAGTTT
80485975 GACTAAAATTTTAGG-AGTTT
1 GACT-AAATTTTAGGAAGTTT
80485995 AATAAGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.40
Consensus pattern (20 bp):
GACTAAATTTTAGGAAGTTT
Found at i:80487397 original size:6 final size:6
Alignment explanation
Indices: 80487382--80487474 Score: 51
Period size: 6 Copynumber: 15.5 Consensus size: 6
80487372 CTGTAAGCAG
* * * * * * * *
80487382 TAACAA TAAGAA TAAGAA GAATAA GAAGAA TAATAA CAACAA TAACAA
1 TAACAA TAACAA TAACAA TAACAA TAACAA TAACAA TAACAA TAACAA
* * * * * * *
80487430 TAACAA GAAGAA AAAGAA GAACAA TAACAA TAATAA CAACAA TAA
1 TAACAA TAACAA TAACAA TAACAA TAACAA TAACAA TAACAA TAA
80487475 TAAGAATAAT
Statistics
Matches: 68, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.68, C:0.10, G:0.10, T:0.13
Consensus pattern (6 bp):
TAACAA
Found at i:80487403 original size:9 final size:9
Alignment explanation
Indices: 80487389--80487414 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80487379 CAGTAACAAT
80487389 AAGAATAAG
1 AAGAATAAG
80487398 AAGAATAAG
1 AAGAATAAG
80487407 AAGAATAA
1 AAGAATAA
80487415 TAACAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.12
Consensus pattern (9 bp):
AAGAATAAG
Found at i:80491689 original size:21 final size:21
Alignment explanation
Indices: 80491663--80491704 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
80491653 TTTTAATGCC
80491663 ATTTGTATTTCTCTTGGATAA
1 ATTTGTATTTCTCTTGGATAA
80491684 ATTTGTATTTCTCTTGGATAA
1 ATTTGTATTTCTCTTGGATAA
80491705 CACAGAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (21 bp):
ATTTGTATTTCTCTTGGATAA
Found at i:80494208 original size:44 final size:44
Alignment explanation
Indices: 80494149--80494235 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
80494139 AGTTTATAAG
* *
80494149 TTAGATTTCTGAAGTCTCTTTTGTTTATGTCATTTTTAATTCTA
1 TTAGATTTCCGAAGTCTCTTTTGTTTAAGTCATTTTTAATTCTA
*
80494193 TTAGTTTTCCGAAGTCTCTTTTGTTTAAGTCATTTTTAATTCT
1 TTAGATTTCCGAAGTCTCTTTTGTTTAAGTCATTTTTAATTCT
80494236 TTATTTATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.20, C:0.13, G:0.11, T:0.56
Consensus pattern (44 bp):
TTAGATTTCCGAAGTCTCTTTTGTTTAAGTCATTTTTAATTCTA
Found at i:80496553 original size:42 final size:41
Alignment explanation
Indices: 80496433--80496599 Score: 181
Period size: 42 Copynumber: 4.0 Consensus size: 41
80496423 AGTATCGTTC
* ** * *
80496433 CAATGCCACATCCCAGATACGGTCTCACATGGAATCTCATAT
1 CAATGCCATATCCCAGATATAGTCTTACA-CGAATCTCATAT
* * * *
80496475 CGATGCCAATAGCCTAGCTATAGTCTTACACGAAGTCTCATAT
1 CAATGCC-ATATCCCAGATATAGTCTTACACGAA-TCTCATAT
*
80496518 CAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATAT
1 CAATGCCATATCCCAGATATAGTCTTACACGAA-TCTCATAT
* *
80496560 CGATGCCATATCCTAGATATAGTCTTACACGTAATCTCAT
1 CAATGCCATATCCCAGATATAGTCTTACACG-AATCTCAT
80496600 TAACCCTAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 74 0.70
43 31 0.30
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (41 bp):
CAATGCCATATCCCAGATATAGTCTTACACGAATCTCATAT
Found at i:80499465 original size:14 final size:14
Alignment explanation
Indices: 80499446--80499474 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
80499436 TAAGGTCCGT
80499446 AGGCTATATGCGGG
1 AGGCTATATGCGGG
80499460 AGGCTATATGCGGG
1 AGGCTATATGCGGG
80499474 A
1 A
80499475 ATTATATCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.14, G:0.41, T:0.21
Consensus pattern (14 bp):
AGGCTATATGCGGG
Found at i:80499503 original size:39 final size:39
Alignment explanation
Indices: 80499460--80499563 Score: 118
Period size: 39 Copynumber: 2.7 Consensus size: 39
80499450 TATATGCGGG
*
80499460 AGGCTATATGCGGGAATTATATCCGGACTTAAGGTCCGT
1 AGGCTATATGCGGGAATTATATCCGGACTTAAGGTCCGC
* * * ** *
80499499 AGGCTATATGCGGGAATCATATTCGAACTTCGGGTTCGC
1 AGGCTATATGCGGGAATTATATCCGGACTTAAGGTCCGC
* * *
80499538 CGGCTATGTGCTGGAATTATATCCGG
1 AGGCTATATGCGGGAATTATATCCGG
80499564 GCTAATAGTC
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (39 bp):
AGGCTATATGCGGGAATTATATCCGGACTTAAGGTCCGC
Found at i:80501812 original size:35 final size:35
Alignment explanation
Indices: 80501766--80501834 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
80501756 AAATTGACTC
80501766 ATACTGTACTCATTTAGCTTGCCATTCACTAACAT
1 ATACTGTACTCATTTAGCTTGCCATTCACTAACAT
80501801 ATACTGTACTCATTTAGCTTGCCATTCACTAACA
1 ATACTGTACTCATTTAGCTTGCCATTCACTAACA
80501835 CATTTCTGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.36
Consensus pattern (35 bp):
ATACTGTACTCATTTAGCTTGCCATTCACTAACAT
Found at i:80506113 original size:57 final size:57
Alignment explanation
Indices: 80506046--80506156 Score: 222
Period size: 57 Copynumber: 1.9 Consensus size: 57
80506036 GCTTTGCCCG
80506046 GATGATAATCAATCACAAGTTCGTAGTCTTTTAACAATTCTAACCATCTTCTCTGTC
1 GATGATAATCAATCACAAGTTCGTAGTCTTTTAACAATTCTAACCATCTTCTCTGTC
80506103 GATGATAATCAATCACAAGTTCGTAGTCTTTTAACAATTCTAACCATCTTCTCT
1 GATGATAATCAATCACAAGTTCGTAGTCTTTTAACAATTCTAACCATCTTCTCT
80506157 ATCGTAGATT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.37
Consensus pattern (57 bp):
GATGATAATCAATCACAAGTTCGTAGTCTTTTAACAATTCTAACCATCTTCTCTGTC
Found at i:80513796 original size:36 final size:37
Alignment explanation
Indices: 80513751--80513847 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
80513741 ACATATTTTT
*
80513751 CCATGGCCCTGCT-TGGGTCATACACGT-ATCACAATG
1 CCATAGCCCTGCTAT-GGTCATACACGTCATCACAATG
* * * *
80513787 CCATAGCCCTGCTATGGTCTTACATGTCATTACGATG
1 CCATAGCCCTGCTATGGTCATACACGTCATCACAATG
* *
80513824 CCATAGCCCAGCTATGGTCTTACA
1 CCATAGCCCTGCTATGGTCATACA
80513848 TGTTATTATG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
36 22 0.42
37 31 0.58
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (37 bp):
CCATAGCCCTGCTATGGTCATACACGTCATCACAATG
Found at i:80513828 original size:37 final size:37
Alignment explanation
Indices: 80513784--80513884 Score: 157
Period size: 37 Copynumber: 2.7 Consensus size: 37
80513774 ACGTATCACA
*
80513784 ATGCCATAGCCCTGCTATGGTCTTACATGTCATTACG
1 ATGCCATAGCCCAGCTATGGTCTTACATGTCATTACG
* *
80513821 ATGCCATAGCCCAGCTATGGTCTTACATGTTATTATG
1 ATGCCATAGCCCAGCTATGGTCTTACATGTCATTACG
* *
80513858 ATGCCATAGTCCAACTATGGTCTTACA
1 ATGCCATAGCCCAGCTATGGTCTTACA
80513885 CATGCACACA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (37 bp):
ATGCCATAGCCCAGCTATGGTCTTACATGTCATTACG
Found at i:80514163 original size:20 final size:21
Alignment explanation
Indices: 80514138--80514176 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
80514128 ATTATCTCTA
80514138 ATTTAACAAT-TAAACATAAG
1 ATTTAACAATATAAACATAAG
*
80514158 ATTTAACCATATAAACATA
1 ATTTAACAATATAAACATA
80514177 CTGATTACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.54, C:0.13, G:0.03, T:0.31
Consensus pattern (21 bp):
ATTTAACAATATAAACATAAG
Found at i:80516887 original size:27 final size:27
Alignment explanation
Indices: 80516853--80516921 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
80516843 TTTTGCCCTT
*
80516853 ATAAGGTAAAATGATTGAAATACCCCC
1 ATAAGGTAAAATGACTGAAATACCCCC
* * *
80516880 ATAGGGTAAAATGACTGTAATACCCCT
1 ATAAGGTAAAATGACTGAAATACCCCC
*
80516907 GTAAGGTAAAATGAC
1 ATAAGGTAAAATGAC
80516922 AGATTTGTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (27 bp):
ATAAGGTAAAATGACTGAAATACCCCC
Found at i:80523163 original size:27 final size:26
Alignment explanation
Indices: 80523125--80523210 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
80523115 GGAGGAAGCG
80523125 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTATGCCAC-AATATCTA
*
80523152 TTCTGGTGGCTATGCCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTA
* * * * *
80523178 TATCTGCTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTATGCCACAATATCTA
80523205 TTCTGG
1 TTCTGG
80523211 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 12 0.23
27 40 0.77
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTA
Found at i:80535086 original size:40 final size:40
Alignment explanation
Indices: 80535001--80535151 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
80534991 AATTGAATGA
* * *
80535001 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
80535041 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
80535082 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
80535121 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
80535152 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:80535165 original size:40 final size:40
Alignment explanation
Indices: 80535037--80535167 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
80535027 TATGCTGGAA
* * *
80535037 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
80535077 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
80535117 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
80535157 ATTATATCCGG
1 ATTATATCCGG
80535168 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:80558341 original size:19 final size:18
Alignment explanation
Indices: 80558302--80558341 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
80558292 ATAATTTAAT
*
80558302 AAATAAAAATAAAATCTAA
1 AAATAAAAATAAAA-ATAA
*
80558321 AACTAAAAATAAAAATAA
1 AAATAAAAATAAAAATAA
80558339 AAA
1 AAA
80558342 ACATATAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (18 bp):
AAATAAAAATAAAAATAA
Found at i:80558342 original size:7 final size:6
Alignment explanation
Indices: 80558302--80558341 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
80558292 ATAATTTAAT
* *
80558302 AAATAA AAATAA AATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AA-ATAA AAATAA AAATAA AAATAA AAA
80558342 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:80558375 original size:9 final size:9
Alignment explanation
Indices: 80558361--80558419 Score: 73
Period size: 9 Copynumber: 6.6 Consensus size: 9
80558351 TTTATACAAA
*
80558361 TAATTCAGT
1 TAATTCGGT
*
80558370 TAATTCAGT
1 TAATTCGGT
* *
80558379 TAATTTGGG
1 TAATTCGGT
*
80558388 TAATTCGGG
1 TAATTCGGT
80558397 TAATTCGGT
1 TAATTCGGT
80558406 TAATTCGGT
1 TAATTCGGT
80558415 TAATT
1 TAATT
80558420 TTATACTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 45 1.00
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:80572622 original size:40 final size:40
Alignment explanation
Indices: 80572528--80572751 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
80572518 TATTCGAATG
* *
80572528 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
80572569 ATAACCAGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
80572609 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
80572649 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
80572689 ATATCCGGGCTAAG-CCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
80572728 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
80572752 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 36 0.23
40 94 0.59
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:80572737 original size:79 final size:80
Alignment explanation
Indices: 80572528--80572787 Score: 296
Period size: 79 Copynumber: 3.3 Consensus size: 80
80572518 TATTCGAATG
* * * * * *
80572528 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
80572593 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * *
80572609 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGTA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
80572674 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * *
80572689 ATATCCGGGCTAAG-CCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
80572753 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
80572767 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
80572788 ATTACTTGAG
Statistics
Matches: 154, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
77 6 0.04
78 20 0.13
79 48 0.31
80 48 0.31
81 32 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:80572771 original size:39 final size:39
Alignment explanation
Indices: 80572528--80572787 Score: 260
Period size: 40 Copynumber: 6.6 Consensus size: 39
80572518 TATTCGAATG
*
80572528 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTA-GTGACT
* * * * * *
80572569 ATAACCAGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAG-TGACT
* *
80572609 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACT
* *
80572649 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGG-CTTTGTGCTAGTGACT
* *
80572689 ATATCCGGGCTAAG-CCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACT
* * *
80572728 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGA-CT
80572767 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
80572788 ATTACTTGAG
Statistics
Matches: 185, Mismatches: 27, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
37 1 0.01
38 14 0.08
39 49 0.26
40 93 0.50
41 28 0.15
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACT
Found at i:80574277 original size:2 final size:2
Alignment explanation
Indices: 80574270--80574299 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
80574260 TGACAAATGG
*
80574270 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80574300 TGAGTATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:80579331 original size:30 final size:30
Alignment explanation
Indices: 80579285--80579347 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
80579275 ATCGAATTTT
*
80579285 AAGTATAGGGGTAAAATGGTCA-TTTAGCTA
1 AAGTATAGGGGCAAAATGGTCATTTTA-CTA
*
80579315 AAGTCTAGGGGCAAAATGGTCATTTTACTA
1 AAGTATAGGGGCAAAATGGTCATTTTACTA
80579345 AAG
1 AAG
80579348 ATGTAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.29
Consensus pattern (30 bp):
AAGTATAGGGGCAAAATGGTCATTTTACTA
Found at i:80579841 original size:47 final size:46
Alignment explanation
Indices: 80579776--80579995 Score: 167
Period size: 47 Copynumber: 4.7 Consensus size: 46
80579766 TATGATAGCC
* *
80579776 AGTGTAAGACCATATCTGGGACATGGCATCGGCGTAGAGATGAGTGAT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCGTAGAGATGAGTGCT
* * *
80579824 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA-TAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCGTAGA-GATGAGT-GCT
* * * * * **
80579871 AGTGTAAGACGTGTCTAGGACATGTATCGTC-TA-AGTTTCGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATGAGTGCT
* * * * * *
80579915 AGTGTAAGACATGTTTGGGACATGCATCAGCACGTATACACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-G-GCGTAGAGATGAGTGCT
* *
80579963 AGTGTAAGACCATGTCTAGGATATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
80579996 CTCGATGGAG
Statistics
Matches: 134, Mismatches: 29, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
44 28 0.21
45 3 0.02
46 14 0.10
47 48 0.36
48 24 0.18
49 12 0.09
50 5 0.04
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATGAGTGCT
Found at i:80579941 original size:91 final size:94
Alignment explanation
Indices: 80579738--80579995 Score: 274
Period size: 94 Copynumber: 2.8 Consensus size: 94
80579728 GACGAGGGCT
* *
80579738 ACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAAGACCATATCTGGGACATGGC
1 ACATGTCTGGGACATGCATCAGCCACATGATGATAGCCAGTGTAAGACCATATCTAGGACATGGC
80579803 ATCGGCGTAGAGATGAGTGATAGTGTAAG
66 ATCGGCGTAGAGATGAGTGATAGTGTAAG
* * * *
80579832 ACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGA-CGTGTCTAGGACAT-G
1 ACATGTCTGGGACATGCATCAGCCAC-ATGATGATAGCCAGTGTAAGACCATATCTAGGACATGG
* * * ** *
80579895 TATCGTC-TA-AGTTTCGTGCTAGTGTAAG
65 CATCGGCGTAGAGATGAGTGATAGTGTAAG
* * * * * * *
80579923 ACATGTTTGGGACATGCATCAG-CACGTATACACGAGAGCTAGTGTAAGACCATGTCTAGGATAT
1 ACATGTCTGGGACATGCATCAGCCAC--AT-GATGATAGCCAGTGTAAGACCATATCTAGGACAT
80579987 GGCATCGGC
63 GGCATCGGC
80579996 CTCGATGGAG
Statistics
Matches: 135, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
90 2 0.01
91 37 0.27
92 17 0.13
93 18 0.13
94 41 0.30
95 20 0.15
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (94 bp):
ACATGTCTGGGACATGCATCAGCCACATGATGATAGCCAGTGTAAGACCATATCTAGGACATGGC
ATCGGCGTAGAGATGAGTGATAGTGTAAG
Found at i:80586096 original size:53 final size:53
Alignment explanation
Indices: 80585918--80586126 Score: 199
Period size: 53 Copynumber: 3.9 Consensus size: 53
80585908 ACTAGGGTTT
* * * *
80585918 AAGGATACCAAGTAAGACCATG-CGAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATGGTAAG-TTTATAAGGC
* * * * * * *
80585972 AAGGAAATCATGTATGACTATGTCAAGACATGGCATTGATAAACTATTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGT-TTATAAGGC
* * * * *
80586027 AAAGAT-CCTATCTAAGACCATG-CTAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACC-ATGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTTATAAGGC
80586080 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTA
80586127 AAAAGGAAAG
Statistics
Matches: 122, Mismatches: 26, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
53 45 0.37
54 39 0.32
55 38 0.31
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTATAAGGC
Found at i:80586734 original size:37 final size:37
Alignment explanation
Indices: 80586684--80586757 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
80586674 TTAAATGGTG
80586684 AATGAGATATAGAATTAAATCTTATTCAGTCTATTTT
1 AATGAGATATAGAATTAAATCTTATTCAGTCTATTTT
*
80586721 AATGAGATATAGAATTAAATCTTATTGAGTCTATTTT
1 AATGAGATATAGAATTAAATCTTATTCAGTCTATTTT
80586758 TATAGGAAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (37 bp):
AATGAGATATAGAATTAAATCTTATTCAGTCTATTTT
Found at i:80587781 original size:20 final size:20
Alignment explanation
Indices: 80587758--80587804 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
80587748 GAGCGCAAAT
80587758 GTGCTATCA-AGAGCACCGTA
1 GTGCTATCAGA-AGCACCGTA
80587778 GTGCTATCAGAAGCACCGTA
1 GTGCTATCAGAAGCACCGTA
*
80587798 ATGCTAT
1 GTGCTAT
80587805 TAGGGGTACG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (20 bp):
GTGCTATCAGAAGCACCGTA
Found at i:80597792 original size:60 final size:60
Alignment explanation
Indices: 80597719--80597839 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 60
80597709 CGAACTTGTC
*
80597719 ATATACCTTCTCTATACTTGAGGTTTTATACTCAAGTTTTGTTATGCAGGTTTATTTTTA
1 ATATACCTTCTCTATACTTGAGGTTTTATACTCAAGTTTTGTCATGCAGGTTTATTTTTA
* **
80597779 ATATACCTTCTCTATACTTGAGGTTTTATATTCAAGTTTTGTCATGTGGGTTTATTTTTA
1 ATATACCTTCTCTATACTTGAGGTTTTATACTCAAGTTTTGTCATGCAGGTTTATTTTTA
80597839 A
1 A
80597840 GGGAGTTGTC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.23, C:0.12, G:0.14, T:0.50
Consensus pattern (60 bp):
ATATACCTTCTCTATACTTGAGGTTTTATACTCAAGTTTTGTCATGCAGGTTTATTTTTA
Found at i:80597935 original size:2 final size:2
Alignment explanation
Indices: 80597928--80597961 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
80597918 ACAAGTACAA
80597928 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80597962 TCAACCAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80598310 original size:3 final size:3
Alignment explanation
Indices: 80598302--80598344 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
80598292 ATGTTTTTAT
80598302 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
80598345 GTCTTTTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:80599575 original size:7 final size:7
Alignment explanation
Indices: 80599546--80599587 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
80599536 ATAGATGTGC
80599546 AAATCAG
1 AAATCAG
*
80599553 -AATTAG
1 AAATCAG
80599559 -AATCAG
1 AAATCAG
*
80599565 AAATCAA
1 AAATCAG
80599572 AAATCAG
1 AAATCAG
80599579 AAATCAG
1 AAATCAG
80599586 AA
1 AA
80599588 TCCTACCTCC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 10 0.33
7 20 0.67
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.17
Consensus pattern (7 bp):
AAATCAG
Found at i:80602781 original size:79 final size:79
Alignment explanation
Indices: 80602698--80602855 Score: 212
Period size: 79 Copynumber: 2.0 Consensus size: 79
80602688 CCGTCGGGTC
* * * * *
80602698 TTAGCCCGG-ATATGGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTTGC
1 TTAGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAATAACTAGC
80602761 ACAAATGCCTTCGGGA
64 ACAAATGCCTTCGGGA
* *
80602777 TTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATCACTAGCAC
1 TTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATAACTAGCAC
*
80602842 AAATGTCTTCGGGA
66 AAATGCCTTCGGGA
80602856 CTTAACCCCG
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 65 0.94
80 4 0.06
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATAACTAGCAC
AAATGCCTTCGGGA
Found at i:80602793 original size:39 final size:40
Alignment explanation
Indices: 80602691--80602859 Score: 218
Period size: 40 Copynumber: 4.2 Consensus size: 40
80602681 CACAAGGCCG
* * * *
80602691 TCGGGTCTTAGCCCGG-ATATGGTCACTAGCGCAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCT
*
80602731 TCGGGACTTAGCCCGG-ATATAGTAACTTGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCT
*
80602771 TCGGGA-TTAGCCCGGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
* * *
80602810 TCGGGACTTAGCCCGGAATTAATCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
80602850 TCGGGACTTA
1 TCGGGACTTA
80602860 ACCCCGTTAG
Statistics
Matches: 117, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.30
40 82 0.70
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
Found at i:80618196 original size:2 final size:2
Alignment explanation
Indices: 80618189--80618220 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80618179 TTATTTGTGC
80618189 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80618221 GTTAAAATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80620133 original size:16 final size:15
Alignment explanation
Indices: 80620107--80620137 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
80620097 TCCTATCCCC
80620107 AATATCAAATACAGA
1 AATATCAAATACAGA
80620122 AATATACAAATACAGA
1 AATAT-CAAATACAGA
80620138 TAAACAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (15 bp):
AATATCAAATACAGA
Found at i:80620261 original size:13 final size:13
Alignment explanation
Indices: 80620245--80620274 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
80620235 AGATTAGTAT
*
80620245 ATCAAAAAATTAG
1 ATCAAAAAATCAG
80620258 ATCAAAAAATCAG
1 ATCAAAAAATCAG
80620271 ATCA
1 ATCA
80620275 GTATCCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (13 bp):
ATCAAAAAATCAG
Found at i:80627023 original size:16 final size:16
Alignment explanation
Indices: 80627002--80627034 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
80626992 TTTTGGTATA
*
80627002 ATGGCATGTATAGGTT
1 ATGGCACGTATAGGTT
80627018 ATGGCACGTATAGGTT
1 ATGGCACGTATAGGTT
80627034 A
1 A
80627035 ACTTGGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.09, G:0.30, T:0.33
Consensus pattern (16 bp):
ATGGCACGTATAGGTT
Found at i:80627142 original size:2 final size:2
Alignment explanation
Indices: 80627135--80627164 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
80627125 TAACATGTTA
80627135 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80627165 GTATGGTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80629462 original size:37 final size:37
Alignment explanation
Indices: 80629419--80629563 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
80629409 GCTCGGACGT
* *
80629419 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
80629456 AATCTCCACACGTAGTCATCAGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
80629493 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
80629530 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
80629564 ATATATTTCC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:80629778 original size:47 final size:47
Alignment explanation
Indices: 80629726--80630145 Score: 608
Period size: 47 Copynumber: 9.0 Consensus size: 47
80629716 TTTCACACTA
* * * * *
80629726 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
80629773 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
80629820 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
80629867 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
80629914 GCCATTCGGCCTTATCACA-ATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
80629960 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
80630007 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
80630054 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * * * *
80630101 GCCATTCTGCCTTATCACATATATACACGTTCATATTCACCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
80630146 AAAATCCTAA
Statistics
Matches: 335, Mismatches: 37, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
46 43 0.13
47 292 0.87
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:80629839 original size:94 final size:94
Alignment explanation
Indices: 80629726--80630145 Score: 698
Period size: 94 Copynumber: 4.5 Consensus size: 94
80629716 TTTCACACTA
* * *
80629726 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
80629791 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * * * *
80629820 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTGGCCATTCGGCCTCATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
* * *
80629885 ATATATGCATGTTCACATTCATCACATAG
66 ACATATGCATGCTCACATTCATCACATTG
80629914 GCCATTCGGCCTTATCACA-ATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
80629978 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
*
80630007 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
80630072 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * *
80630101 GCCATTCTGCCTTATCACATATATACACGTTCATATTCACCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACAT
80630146 AAAATCCTAA
Statistics
Matches: 303, Mismatches: 22, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
93 85 0.28
94 218 0.72
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:80629999 original size:187 final size:188
Alignment explanation
Indices: 80629718--80630145 Score: 698
Period size: 187 Copynumber: 2.3 Consensus size: 188
80629708 CCTACATATT
* * *
80629718 TCACACTA-GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTGGCCATTCGG
1 TCACA-TAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGG
*
80629782 CCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCA
65 CCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
* * * *
80629847 TGCTCACATTTATCACATTGGCCATTCGGCCTCATCACATATATGCATGTTCACATTCA
130 TGCTCACATTCACCACATTGGCCATTCGGCCTCATCACACATATGCATGCTCACATTCA
80629906 TCACATAGGCCATTCGGCCTTATCACA-ATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
80629970 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT
* * *
80630035 GTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
131 GCTCACATTCACCACATTGGCCATTCGGCCTCATCACACATATGCATGCTCACATTCA
* * * *
80630093 TCACATTGGCCATTCTGCCTTATCACATATATACACGTTCATATTCACCACAT
1 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACAT
80630146 AAAATCCTAA
Statistics
Matches: 223, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
187 178 0.80
188 45 0.20
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (188 bp):
TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT
GCTCACATTCACCACATTGGCCATTCGGCCTCATCACACATATGCATGCTCACATTCA
Found at i:80650710 original size:69 final size:68
Alignment explanation
Indices: 80650588--80650718 Score: 165
Period size: 69 Copynumber: 1.9 Consensus size: 68
80650578 CATGTAAGAT
* * * * *
80650588 CATGTCTGGGACATTGGCATTGTATGGTGATTACGTATAAGACGATGTCTGGGACATTGGCATCG
1 CATGTCTGGGACATTGGCATCGTATGGTGATAACATATAAGACCATATCTGGGACA-TGGCATCG
80650653 TTAC
65 TTAC
* * *
80650657 CATGTCTGGGACATTGGCATCGATAT-GTGATAACATGTAAGACCATATTTGGGATATGGCAT
1 CATGTCTGGGACATTGGCATCG-TATGGTGATAACATATAAGACCATATCTGGGACATGGCAT
80650719 TGTATGAGCT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
68 6 0.11
69 44 0.83
70 3 0.06
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (68 bp):
CATGTCTGGGACATTGGCATCGTATGGTGATAACATATAAGACCATATCTGGGACATGGCATCGT
TAC
Found at i:80654168 original size:43 final size:43
Alignment explanation
Indices: 80654118--80654284 Score: 205
Period size: 43 Copynumber: 3.9 Consensus size: 43
80654108 GATTACCGAG
* *
80654118 ATGTGATTACATGTAAGATCATGTCTGGGACATTGGCATTG-T
1 ATGTGATTACATGTAAGATCATATCTGGGACATTGGCATCGAT
* *
80654160 ATGGTGATTACATATAAGA-CGATATCTGGGACATTGGCATCGTT
1 AT-GTGATTACATGTAAGATC-ATATCTGGGACATTGGCATCGAT
* * *
80654204 ATATGATTTCATGTAAGATCATGTCTGGGACATTGGCATCGAT
1 ATGTGATTACATGTAAGATCATATCTGGGACATTGGCATCGAT
* * *
80654247 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGATCATATCTGGGACATTGGCAT
80654285 TGTATGAGCT
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
42 9 0.08
43 94 0.88
44 4 0.04
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (43 bp):
ATGTGATTACATGTAAGATCATATCTGGGACATTGGCATCGAT
Found at i:80654271 original size:86 final size:85
Alignment explanation
Indices: 80654121--80654284 Score: 249
Period size: 86 Copynumber: 1.9 Consensus size: 85
80654111 TACCGAGATG
* * *
80654121 TGATTACATGTAAGATCATGTCTGGGACATTGGCATTGTATGGTGATTACATATAAGACGATATC
1 TGATTACATGTAAGATCATGTCTGGGACATTGGCATCGTATGGTGATAACATATAAGACCATATC
80654186 TGGGACATTGGCATCGTTATA
66 TGGGACA-TGGCATCGTTATA
* *
80654207 TGATTTCATGTAAGATCATGTCTGGGACATTGGCATCGATAT-GTGATAACATGTAAGACCATAT
1 TGATTACATGTAAGATCATGTCTGGGACATTGGCATCG-TATGGTGATAACATATAAGACCATAT
*
80654271 CTGGGATATGGCAT
65 CTGGGACATGGCAT
80654285 TGTATGAGCT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
85 6 0.08
86 62 0.87
87 3 0.04
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.33
Consensus pattern (85 bp):
TGATTACATGTAAGATCATGTCTGGGACATTGGCATCGTATGGTGATAACATATAAGACCATATC
TGGGACATGGCATCGTTATA
Found at i:80656515 original size:93 final size:93
Alignment explanation
Indices: 80656356--80656526 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
80656346 CCCATAAGCG
*** * *
80656356 AACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATGAGTGAACTCGGACTCAACTTAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
80656421 GAGTTCGGATGCCTAGTTACATCTTACA
66 GAGTTCGGATGCCTAGTTACATCTTACA
*
80656449 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
80656514 GAGTTCGGATGCC
66 GAGTTCGGATGCC
80656527 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTTACA
Found at i:80656522 original size:46 final size:46
Alignment explanation
Indices: 80656347--80656522 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
80656337 TGTAACCCGC
* * ***
80656347 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
80656393 CCATGAGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
80656443 -CTTACA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATA-AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
80656486 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80656523 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 4 0.04
46 60 0.57
47 27 0.25
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:80660811 original size:11 final size:11
Alignment explanation
Indices: 80660791--80660819 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
80660781 CTGTATCTAG
80660791 GAAAAA-TTTT
1 GAAAAATTTTT
80660801 GAAAAATTTTT
1 GAAAAATTTTT
80660812 GAAAAATT
1 GAAAAATT
80660820 CTCTGATATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (11 bp):
GAAAAATTTTT
Found at i:80663886 original size:31 final size:31
Alignment explanation
Indices: 80663851--80663922 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
80663841 TCATACGTTA
*
80663851 TAATCATTCACATTTGCATATTCACCCCCTG
1 TAATCATTCACATTTGCATATTCACACCCTG
* *
80663882 TAATCATTCACATTTGCATTTTCATACCCTG
1 TAATCATTCACATTTGCATATTCACACCCTG
80663913 TAATCATTCA
1 TAATCATTCA
80663923 TATAAATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.39
Consensus pattern (31 bp):
TAATCATTCACATTTGCATATTCACACCCTG
Found at i:80664361 original size:18 final size:19
Alignment explanation
Indices: 80664333--80664368 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
80664323 TCATGATACT
*
80664333 AAATAATATTTTTTATTTC
1 AAATAATATTTTGTATTTC
80664352 AAAT-ATATTTTGTATTT
1 AAATAATATTTTGTATTT
80664369 TATTCAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (19 bp):
AAATAATATTTTGTATTTC
Found at i:80673509 original size:15 final size:14
Alignment explanation
Indices: 80673487--80673517 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
80673477 AATTAGATAT
80673487 TATTTATTATAAAA
1 TATTTATTATAAAA
80673501 TATTATATTATAAAA
1 TATT-TATTATAAAA
80673516 TA
1 TA
80673518 AATTTCGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TATTTATTATAAAA
Found at i:80681100 original size:28 final size:28
Alignment explanation
Indices: 80681060--80681130 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
80681050 TATGAGATTG
*
80681060 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
80681088 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
80681116 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
80681131 ACTTTCTATA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:80681903 original size:11 final size:11
Alignment explanation
Indices: 80681887--80681911 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80681877 GGGTCCCTTT
80681887 ATATACAATAA
1 ATATACAATAA
80681898 ATATACAATAA
1 ATATACAATAA
80681909 ATA
1 ATA
80681912 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:80682618 original size:15 final size:15
Alignment explanation
Indices: 80682590--80682626 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
80682580 TTTATCTTAG
80682590 TTATATTCTATTTTAT
1 TTAT-TTCTATTTTAT
*
80682606 TTATTTCTTTTTTAT
1 TTATTTCTATTTTAT
80682621 TTATTT
1 TTATTT
80682627 ATCCATCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (15 bp):
TTATTTCTATTTTAT
Found at i:80682864 original size:21 final size:20
Alignment explanation
Indices: 80682823--80682864 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
80682813 CCCATTATCC
*
80682823 AATAAAAACCTAAAATTCCT
1 AATAAAAACCTAAAATGCCT
80682843 AATAATAAACC-AAAATCGCCT
1 AATAA-AAACCTAAAAT-GCCT
80682864 A
1 A
80682865 TCCGATTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.55, C:0.21, G:0.02, T:0.21
Consensus pattern (20 bp):
AATAAAAACCTAAAATGCCT
Found at i:80685713 original size:21 final size:21
Alignment explanation
Indices: 80685689--80685732 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
80685679 ACGACCTAAT
*
80685689 TAAATAGAAAGGATA-ATTAAA
1 TAAATA-AAAGGATATAATAAA
*
80685710 TAAATAAAATGATATAATAAA
1 TAAATAAAAGGATATAATAAA
80685731 TA
1 TA
80685733 CTAAAGATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (21 bp):
TAAATAAAAGGATATAATAAA
Found at i:80699256 original size:28 final size:28
Alignment explanation
Indices: 80699191--80699291 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
80699181 ATAGTGAATC
*
80699191 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
80699220 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
80699248 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
80699278 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80699292 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80705561 original size:118 final size:117
Alignment explanation
Indices: 80705281--80705519 Score: 360
Period size: 119 Copynumber: 2.0 Consensus size: 117
80705271 TACAAGGTAT
*
80705281 TACCAGAACATAACATACCATTAAACATAACCGAATATAAATAT-GTCATCCAATTTGATAGTGC
1 TACCAGAA-ATAACATACCATTAAACATAA-CG-A-ACAAATATGGTCATCCAATTTGATAGTGC
80705345 ATCGTATAATATGTCTTGAACAATATTAGCCAACTTTAATGGCTTGTACAAATAGC
62 ATCGTATAATATGTCTTGAACAATATTAGCCAACTTTAATGGCTTGTACAAATAGC
*
80705401 TACCAGAAATAACATACCATTAAACATAACGAATATAAATATGGTCATCCAA-TTGATAGTGCAT
1 TACCAGAAATAACATACCATTAAACATAACG-A-ACAAATATGGTCATCCAATTTGATAGTGCAT
80705465 CGTATAAATATGTCTTGAACAATATTAGCC-ACTTT-ATGGCTTGTACAAATTAGC
64 CGTAT-AATATGTCTTGAACAATATTAGCCAACTTTAATGGCTTGTACAAA-TAGC
80705519 T
1 T
80705520 GGTCGAGTAC
Statistics
Matches: 116, Mismatches: 0, Indels: 8
0.94 0.00 0.06
Matches are distributed among these distances:
117 14 0.12
118 40 0.34
119 54 0.47
120 8 0.07
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.31
Consensus pattern (117 bp):
TACCAGAAATAACATACCATTAAACATAACGAACAAATATGGTCATCCAATTTGATAGTGCATCG
TATAATATGTCTTGAACAATATTAGCCAACTTTAATGGCTTGTACAAATAGC
Found at i:80709640 original size:40 final size:40
Alignment explanation
Indices: 80709596--80709815 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
80709586 AATTCGAATG
* *
80709596 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
80709636 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAG-TGACT
* * * * *
80709676 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
*
80709716 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * * * **
80709756 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
*
80709795 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
80709816 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
38 13 0.09
39 16 0.11
40 118 0.79
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:80711269 original size:46 final size:46
Alignment explanation
Indices: 80711219--80711431 Score: 320
Period size: 46 Copynumber: 4.6 Consensus size: 46
80711209 TGCCATAATG
* * *
80711219 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTA
** * * *
80711265 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
80711311 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
80711357 CCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
80711403 TCTTTCAACTATGGTCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACACATTTCAT
80711432 TTCAGAAAGC
Statistics
Matches: 154, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.03
46 150 0.97
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
Found at i:80711362 original size:25 final size:25
Alignment explanation
Indices: 80711334--80711409 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
80711324 GTCTTACACA
80711334 TTTCATATCATGTTGCCATGGTACC
1 TTTCATATCATGTTGCCATGGTACC
* *
80711359 TTTCA-ACCATG--GTC-T--TACAC
1 TTTCATATCATGTTGCCATGGTAC-C
*
80711379 ATTTCATATCATGTTGCCATGGTATC
1 -TTTCATATCATGTTGCCATGGTACC
80711405 TTTCA
1 TTTCA
80711410 ACTATGGTCT
Statistics
Matches: 38, Mismatches: 5, Indels: 16
0.64 0.08 0.27
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 6 0.16
22 7 0.18
24 7 0.18
25 11 0.29
26 1 0.03
27 2 0.05
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (25 bp):
TTTCATATCATGTTGCCATGGTACC
Found at i:80711383 original size:21 final size:21
Alignment explanation
Indices: 80711313--80711384 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
80711303 TCATGGTATC
80711313 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* *
80711334 TTTCATATCATGTTGCCATGGTAC-C-
1 TTTCA-ACCATG--GTC-T--TACACA
80711359 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
80711380 TTTCA
1 TTTCA
80711385 TATCATGTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 11 0.28
22 7 0.18
24 7 0.18
25 6 0.15
26 1 0.03
27 3 0.08
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.38
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:80713326 original size:3 final size:3
Alignment explanation
Indices: 80713318--80713360 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
80713308 GAAAGAAAAA
* * *
80713318 CTT CTT CTT -TT CTT CTT TTT CTT CTT TTT CTT CTT GTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
80713361 CACGTTAGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (3 bp):
CTT
Found at i:80713339 original size:9 final size:9
Alignment explanation
Indices: 80713319--80713360 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
80713309 AAAGAAAAAC
80713319 TTCTTC-TT
1 TTCTTCTTT
80713327 TTCTTCTTT
1 TTCTTCTTT
80713336 TTCTTCTTT
1 TTCTTCTTT
*
80713345 TTCTTCTTG
1 TTCTTCTTT
80713354 TTCTTCT
1 TTCTTCT
80713361 CACGTTAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
8 6 0.19
9 26 0.81
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.74
Consensus pattern (9 bp):
TTCTTCTTT
Found at i:80716187 original size:22 final size:22
Alignment explanation
Indices: 80716162--80716208 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
80716152 TATGTATTAT
*
80716162 TAAACAGAGAGCACAAATGTGC
1 TAAACAGAGAGCACAAATATGC
** *
80716184 TAAATGGAGAGCACTAATATGC
1 TAAACAGAGAGCACAAATATGC
80716206 TAA
1 TAA
80716209 TAATCAGAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (22 bp):
TAAACAGAGAGCACAAATATGC
Found at i:80717530 original size:46 final size:46
Alignment explanation
Indices: 80717465--80717692 Score: 359
Period size: 46 Copynumber: 5.0 Consensus size: 46
80717455 TTATCTTCAA
* * * * **
80717465 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTTATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGT
**
80717511 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
80717557 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
80717603 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
*
80717649 CATGTTGCCATGGTATCTTTCAACTATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
80717693 TTCAGAAAGC
Statistics
Matches: 172, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 168 0.98
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
Found at i:80720506 original size:29 final size:30
Alignment explanation
Indices: 80720433--80720510 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
80720423 AGAATACCCT
* *
80720433 TAAAGTATTGATTTTGTTTGAGTTAGGTACC
1 TAAATTATTGATTTTG-TTAAGTTAGGTACC
* * *
80720464 TAAATTATT-TTTTTGTTAATTTGGGTACC
1 TAAATTATTGATTTTGTTAAGTTAGGTACC
80720493 TAAATT-TTGATTTTGTTA
1 TAAATTATTGATTTTGTTA
80720511 TTGAAGTTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 2 0.05
29 25 0.62
30 5 0.12
31 8 0.20
ACGTcount: A:0.26, C:0.05, G:0.17, T:0.53
Consensus pattern (30 bp):
TAAATTATTGATTTTGTTAAGTTAGGTACC
Found at i:80720623 original size:19 final size:21
Alignment explanation
Indices: 80720601--80720640 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
80720591 TTAAAATTTT
80720601 TTATATTAA-A-TAAAAATAA
1 TTATATTAATATTAAAAATAA
80720620 TTATATTAATATTAAAAATAA
1 TTATATTAATATTAAAAATAA
80720641 AAAATACCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.47
20 1 0.05
21 9 0.47
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TTATATTAATATTAAAAATAA
Found at i:80729773 original size:19 final size:19
Alignment explanation
Indices: 80729749--80729788 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80729739 TTTATTTAAG
80729749 TTTTATTTAATCAAGATTC
1 TTTTATTTAATCAAGATTC
80729768 TTTTATTTAATCAAGATTC
1 TTTTATTTAATCAAGATTC
80729787 TT
1 TT
80729789 CTCTTCCTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTATTTAATCAAGATTC
Found at i:80733044 original size:21 final size:21
Alignment explanation
Indices: 80732982--80733049 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
80732972 GAGCTGAACA
*
80732982 GAAACCCATAAGGGTTAAACT
1 GAAACCCAAAAGGGTTAAACT
* * ** * *
80733003 GAAGCTCAAAATAGCTGAACT
1 GAAACCCAAAAGGGTTAAACT
*
80733024 GAAACCCAGAAGGGTTAAACT
1 GAAACCCAAAAGGGTTAAACT
*
80733045 AAAAC
1 GAAAC
80733050 TCATATGAGT
Statistics
Matches: 32, Mismatches: 15, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.46, C:0.19, G:0.19, T:0.16
Consensus pattern (21 bp):
GAAACCCAAAAGGGTTAAACT
Found at i:80733044 original size:42 final size:42
Alignment explanation
Indices: 80732949--80733044 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
80732939 GGAAACCTGT
** * *
80732949 AAGGGTTAAAGGGAAGCTCATAAGAGCTGAACAGAAACCCAT
1 AAGGGTTAAACTGAAGCTCAAAAGAGCTGAACAGAAACCCAG
* *
80732991 AAGGGTTAAACTGAAGCTCAAAATAGCTGAACTGAAACCCAG
1 AAGGGTTAAACTGAAGCTCAAAAGAGCTGAACAGAAACCCAG
80733033 AAGGGTTAAACT
1 AAGGGTTAAACT
80733045 AAAACTCATA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.17
Consensus pattern (42 bp):
AAGGGTTAAACTGAAGCTCAAAAGAGCTGAACAGAAACCCAG
Found at i:80735730 original size:18 final size:19
Alignment explanation
Indices: 80735707--80735744 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
80735697 TAATTTGCCT
80735707 ATGTGGGCCCACACG-CCC
1 ATGTGGGCCCACACGACCC
80735725 ATGTGGGCCCACACGACCC
1 ATGTGGGCCCACACGACCC
80735744 A
1 A
80735745 AAATGTCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.21, C:0.42, G:0.26, T:0.11
Consensus pattern (19 bp):
ATGTGGGCCCACACGACCC
Found at i:80737562 original size:40 final size:40
Alignment explanation
Indices: 80737507--80737696 Score: 276
Period size: 40 Copynumber: 4.8 Consensus size: 40
80737497 AATGATAACG
* * *
80737507 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
80737547 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
80737587 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
** *
80737627 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
80737667 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
80737697 AGCTATATCC
Statistics
Matches: 138, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
39 3 0.02
40 134 0.97
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:80745167 original size:40 final size:40
Alignment explanation
Indices: 80745112--80745235 Score: 196
Period size: 40 Copynumber: 3.1 Consensus size: 40
80745102 GACTAAGATT
* *
80745112 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCC
*
80745152 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCC
* *
80745192 CGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATCC
1 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCC
80745231 CGAAG
1 CGAAG
80745236 ATGCTTGGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.17
40 65 0.83
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCC
Found at i:80747648 original size:40 final size:40
Alignment explanation
Indices: 80747555--80747770 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
80747545 TGGAAGATAA
*
80747555 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
80747594 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
80747634 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80747674 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80747714 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
80747753 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80747771 TACTTGGCTT
Statistics
Matches: 167, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
38 15 0.09
39 52 0.31
40 100 0.60
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80755614 original size:40 final size:40
Alignment explanation
Indices: 80755559--80755774 Score: 296
Period size: 40 Copynumber: 5.5 Consensus size: 40
80755549 CGGATGATAA
*
80755559 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
80755599 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
80755639 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
80755678 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
80755718 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
80755757 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80755775 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 15 0.09
39 51 0.31
40 97 0.60
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:80755691 original size:79 final size:79
Alignment explanation
Indices: 80755559--80755774 Score: 303
Period size: 79 Copynumber: 2.7 Consensus size: 79
80755549 CGGATGATAA
* * *
80755559 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTGG
*
80755624 TGCGAGTTATTACAT
65 TGCGAGTTACTACAT
80755639 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTGG
*
80755703 TGCGAGTTACTATAT
65 TGCGAGTTACTACAT
* * * *
80755718 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATCCGGGCTAAGTCCCGAAGG
80755775 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
78 16 0.13
79 89 0.72
80 19 0.15
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTACAT
Found at i:80764596 original size:40 final size:40
Alignment explanation
Indices: 80764530--80764693 Score: 208
Period size: 40 Copynumber: 4.1 Consensus size: 40
80764520 GACTAAGATT
* * * * *
80764530 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCC
1 CGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACC
*
80764570 CGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACC
* * *
80764610 CGAAGGCATTTGTGCGAGTTGCTATATCCAGGCTAAGACC
1 CGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACC
80764650 CGAAGGCATTTGTGCTAGTTGTTATATCC-GGCTAA-ATCC
1 CGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGA-CC
80764689 CGAAG
1 CGAAG
80764694 ATGCTTGGGT
Statistics
Matches: 109, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.14
40 91 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACC
Found at i:80764655 original size:80 final size:79
Alignment explanation
Indices: 80764530--80764693 Score: 242
Period size: 80 Copynumber: 2.1 Consensus size: 79
80764520 GACTAAGATT
* * *
80764530 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTA
1 CGAAGGCATTCGTGCGAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTTG-TTA
80764594 TATCCGGGCTAAGA-CC
65 TATCC-GGCTAA-ATCC
* *
80764610 CGAAGGCATTTGTGCGAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTAT
1 CGAAGGCATTCGTGCGAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTTGTTAT
80764675 ATCCGGCTAAATCC
66 ATCCGGCTAAATCC
80764689 CGAAG
1 CGAAG
80764694 ATGCTTGGGT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
78 1 0.01
79 13 0.17
80 61 0.79
81 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTCGTGCGAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTTGTTAT
ATCCGGCTAAATCC
Found at i:80766815 original size:27 final size:26
Alignment explanation
Indices: 80766784--80766903 Score: 116
Period size: 27 Copynumber: 4.5 Consensus size: 26
80766774 GTACACTATA
* *
80766784 AAGGCTATTCTTGCAGGATTTGCCACT
1 AAGGCTATTCTT-CAGAATTCGCCACT
* *
80766811 AAGGCTATCCCTTCATAATTCGCCACT
1 AAGGCTAT-TCTTCAGAATTCGCCACT
* * *
80766838 AATGCTATTCTCTCAGAGTTCGCCACA
1 AAGGCTATTCT-TCAGAATTCGCCACT
*
80766865 AAGGCTATTCTTTCAGAATTTGCCA-T
1 AAGGCTATTC-TTCAGAATTCGCCACT
80766891 AAGGGCTATTCTT
1 AA-GGCTATTCTT
80766904 TCCTGACACA
Statistics
Matches: 76, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
26 6 0.08
27 66 0.87
28 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (26 bp):
AAGGCTATTCTTCAGAATTCGCCACT
Found at i:80769419 original size:40 final size:40
Alignment explanation
Indices: 80769359--80769522 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
80769349 CGGGATTCAA
* ** *
80769359 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
80769399 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
80769439 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
80769479 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
80769519 CCGG
1 CCGG
80769523 GTATCATTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 100 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:80769506 original size:80 final size:80
Alignment explanation
Indices: 80769359--80769522 Score: 204
Period size: 80 Copynumber: 2.0 Consensus size: 80
80769349 CGGGATTCAA
* * ** * *
80769359 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
80769424 CCTTCGGGTCTTAGC
66 CCTTCGGGACTTAGC
** * * *
80769439 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
80769503 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
80769519 CCGG
1 CCGG
80769523 GTATCATTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 69 0.97
81 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:80777490 original size:40 final size:40
Alignment explanation
Indices: 80777430--80777592 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
80777420 CGGGATTCAA
* ** *
80777430 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
80777470 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
80777510 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
80777550 CCGGATATAATC-ACTAGCATAAATGCCTT-GGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
80777589 CCGG
1 CCGG
80777593 GTATCATTCA
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
39 15 0.14
40 86 0.83
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:80777577 original size:80 final size:79
Alignment explanation
Indices: 80777430--80777592 Score: 193
Period size: 80 Copynumber: 2.1 Consensus size: 79
80777420 CGGGATTCAA
* * ** * *
80777430 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
80777495 CCTTCGGGTCTTAGC
66 CCTT-GGGACTTAGC
** * * *
80777510 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
80777574 GCCTTGGGACTTAGC
65 GCCTTGGGACTTAGC
80777589 CCGG
1 CCGG
80777593 GTATCATTCA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 13 0.19
80 55 0.79
81 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTGGGACTTAGC
Found at i:80781203 original size:46 final size:45
Alignment explanation
Indices: 80781150--80781316 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 45
80781140 ATCCGAACTC
80781150 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCAT
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGC-T
* * * * *
80781196 GTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCGAACTT
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CCGAGC-T
* *
80781243 GTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAGCT
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCT
*
80781288 CGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -GTTGAGTTGAGTCCGAGTTCACTTATGG
80781317 GCGGGTTACA
Statistics
Matches: 97, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
45 5 0.05
46 52 0.54
47 26 0.27
48 4 0.04
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (45 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCT
Found at i:80781296 original size:93 final size:93
Alignment explanation
Indices: 80781137--80781309 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
80781127 TGGATATTTG
*
80781137 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCATGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCATGTTGAG
80781202 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
80781230 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAGC-TCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCAT-GTTGA
80781294 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
80781310 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCATGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:80782920 original size:2 final size:2
Alignment explanation
Indices: 80782913--80782948 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
80782903 GAATTTACTC
80782913 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80782949 TTATTGTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80791517 original size:22 final size:22
Alignment explanation
Indices: 80791491--80791540 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 22
80791481 TGTACTTTTG
80791491 GGGCTAGATCCGAAAAGCTATT
1 GGGCTAGATCCGAAAAGCTATT
* *
80791513 GGGCTTTGATCCGGAAAGCTATT
1 GGGC-TAGATCCGAAAAGCTATT
80791536 GGGCT
1 GGGCT
80791541 TTGTGGTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 5 0.20
23 20 0.80
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (22 bp):
GGGCTAGATCCGAAAAGCTATT
Found at i:80791523 original size:23 final size:23
Alignment explanation
Indices: 80791497--80791543 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
80791487 TTTGGGGCTA
80791497 GATCCGAAAAGCTATTGGGCTTT
1 GATCCGAAAAGCTATTGGGCTTT
*
80791520 GATCCGGAAAGCTATTGGGCTTT
1 GATCCGAAAAGCTATTGGGCTTT
80791543 G
1 G
80791544 TGGTCAGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (23 bp):
GATCCGAAAAGCTATTGGGCTTT
Found at i:80794127 original size:51 final size:50
Alignment explanation
Indices: 80794033--80794182 Score: 169
Period size: 53 Copynumber: 2.9 Consensus size: 50
80794023 CGGAAGAAAG
* * * *
80794033 CCAAAGTGAAAATCCGCAAAGGGTGCTTTGAGACTTTCAA-AAAAAAAGGGG
1 CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGAC--TCAATAAAAAAAAGGC
* *
80794084 GCAAAGTGAAAACCCACAAAGGGCGCTTTGAGAC-CAAATAAAAATGGAAAGGC
1 CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTC-AATAAAAA---AAAGGC
*
80794137 CCAAAGTGAAAACCCGTAAAGGGCGCTTTGAGACTCAATAAAAAAA
1 CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTCAATAAAAAAA
80794183 GAGAAGAGAA
Statistics
Matches: 84, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
48 1 0.01
49 2 0.02
50 7 0.08
51 30 0.36
53 43 0.51
54 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.23, T:0.15
Consensus pattern (50 bp):
CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTCAATAAAAAAAAGGC
Found at i:80795444 original size:43 final size:45
Alignment explanation
Indices: 80795397--80795483 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 45
80795387 GCCTCACCTC
* * **
80795397 TCTGAGGTAGTAAGAGAGCAGTTTGAAGAATG-AG-TCTTATCTT
1 TCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGATCTTATCTT
*
80795440 TCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGATCTTATCT
1 TCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGATCTTATCT
80795484 CCCTGAAGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 27 0.73
44 2 0.05
45 8 0.22
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.29
Consensus pattern (45 bp):
TCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGATCTTATCTT
Found at i:80795601 original size:176 final size:177
Alignment explanation
Indices: 80795287--80795611 Score: 517
Period size: 176 Copynumber: 1.8 Consensus size: 177
80795277 GCAATATTGG
* *
80795287 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGAGGAGCGGATCGAATATGGTGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATCGAAAATGGTGAATCTTATC
* * * * *
80795352 TCCATGTATCGGCAATGGAGCAGATTTTACCACCCGCCTCACCTCTCTGAGGTAGTAAGAGAGCA
66 TCCATGTATCGCCAATGGAGCAGATTTTACCACCAGCCTCACCTCTCTGAGGTAGCAAGAAAACA
*
80795417 GTTTGAAGAATGAG-TCTTATCTTTCTGAGGTAGCAAGAAAGCAGAC
131 GATTGAAGAATGAGATCTTATCTTTCTGAGGTAGCAAGAAAGCAGAC
* *
80795463 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAAATGGTGAATCTTATT
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATCGAAAATGGTGAATCTTATC
* * *
80795528 TCCATGTATCGCCAATGGAGCAGATTTTACCACCAGCCTTATCTCTCTGAGGTGGCAAGAAAACA
66 TCCATGTATCGCCAATGGAGCAGATTTTACCACCAGCCTCACCTCTCTGAGGTAGCAAGAAAACA
*
80795593 GATTGAAGAGTGAGATCTT
131 GATTGAAGAATGAGATCTT
80795612 CTTGAGATAA
Statistics
Matches: 134, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
176 130 0.97
177 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (177 bp):
TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATCGAAAATGGTGAATCTTATC
TCCATGTATCGCCAATGGAGCAGATTTTACCACCAGCCTCACCTCTCTGAGGTAGCAAGAAAACA
GATTGAAGAATGAGATCTTATCTTTCTGAGGTAGCAAGAAAGCAGAC
Found at i:80795862 original size:20 final size:20
Alignment explanation
Indices: 80795834--80795871 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80795824 TAATTTTGTA
*
80795834 GTTAATTTTGACTAAATTTG
1 GTTAATTTTGACAAAATTTG
*
80795854 GTTATTTTTGACAAAATT
1 GTTAATTTTGACAAAATT
80795872 ACACAATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.50
Consensus pattern (20 bp):
GTTAATTTTGACAAAATTTG
Found at i:80797317 original size:653 final size:649
Alignment explanation
Indices: 80795957--80797226 Score: 2085
Period size: 653 Copynumber: 2.0 Consensus size: 649
80795947 AATTAATTTC
* ** *
80795957 CAGCCTAAGACGATCCAGAAATGTGTATTAATTCATAATTAAATTAATTTTAATTTATTTCCTAT
1 CAGCCCAAGAC-ATCCAGAAAACTGGATTAATTCATAATTAAATTAATTTTAATTTATTTCCTAT
80796022 TTAATTTAGGTTAAATGAATTAATTTTAATTAATTATGAAGAAAGGGCCTAGTGAACCGCACTGG
65 TTAATTTAGGTTAAATGAATTAATTTTAATTAATTATGAAGAAAGGGCCTAGTGAACCGCACTGG
80796087 TTGAACCGAATGAAGTGAGCCAAACCGCCACTAATTGGGCTGACCAGAACCGTCCATTGGCTGAC
130 TTGAACCGAATGAAGTGAGCCAAACCGCCACTAATTGGGCTGACCAGAACCGTCCATTGGCTGAC
*** * *
80796152 CCAAATCAGGCAATTAGCTGATAAAATATTCTTGCAAAAAGGCCCTTGAAAAACCTTCAAATTAC
195 CCAAATCAAAAAATTAGCTGATAAAATATGCTTGCAAAAAGGCCCTTGAAAAACCTCCAAATTAC
80796217 GTTCAAACCCCATCTTTATTTTAGGCTTTGTAGATTTGCCCCAGCCTATTTTTAGCAAGGTTGAA
260 GTTCAAACCCCATCTTTATTTTAGGCTTTGTAGATTTGCCCCAGCCTATTTTTAGCAAGGTTGAA
*
80796282 AGCTTCAACCTTGACATGTGTGTGGCCAACCGTGGGAGGGCTCTCTTGGCTGCTGAATTTGCTAT
325 AGCTTCAACCTTGACATGTGTGTGGCCAACCATGGGAGGGCTCTCTTGGCTGCTGAATTTGCTAT
* * * *
80796347 TTTTAGTAGCCCTCTTTAGCTATAAAATCCACCCTATGCTGCCCATTTCAAGGTATCCCTCAACA
390 TTTTAGCAGCCCTCTTCAGCTATAAAAGCCACCCTATGCTGCCCATTTCAAGGCATCCCTCAACA
* *
80796412 TCCCTCATTCCACAACATTCTTTCACCCTCTCTTCACTTCTCTCAAAGTTTCCTCTCAATTTTTC
455 TCCCTCATTCCACAACATTCTCTCACCCTCTCTTCACTTATCTCAAAGTTTCCTCTCAATTTTTC
*
80796477 CATCCCAGTTTCCCTTCCTCTTGTGCCGATTTCCTCTCTTGAGAAAGAGGTGTTCTTCAACCATC
520 CATCCCAGTTTCCCTTCCTCTTGTGCCGATTTCCTCTCTTGAGAAAGAGGTGATCTTCAACCATC
* * * * **
80796542 TTGGGCAGCAATCAAGGATTCATAGAAGCCTTGAAATCCAAAAATGTGTATTGAGACCAATTAAT
585 TTGGGCAGCAATCAAGGATTCATAGAAGCCTTGAAATCCAAAAAAGAGTACTAAGACCAAGCAA-
80796607 TT
649 -T
** *
80796609 CCAGCCCAAGACATCCAGAAATGTGTATTAATTCATAATTAAATTAATTTTAATTTATTTCCTAT
1 -CAGCCCAAGACATCCAGAAAACTGGATTAATTCATAATTAAATTAATTTTAATTTATTTCCTAT
* *
80796674 TTAATTTAGGTTAAATGAATTAATTTTAATTAATTATGAAGAAATGGCCTAGTGAACTGCACTGG
65 TTAATTTAGGTTAAATGAATTAATTTTAATTAATTATGAAGAAAGGGCCTAGTGAACCGCACTGG
* * *
80796739 TTGAACCGAATGAAGTGAGCCGAACCAGCCACTAATTGGGCTGACCAGGATCGTCCATTGGCTGA
130 TTGAACCGAATGAAGTGAGCCAAACC-GCCACTAATTGGGCTGACCAGAACCGTCCATTGGCTGA
*
80796804 CGCAAATCAAAAAATTAGCTGATAAAATATGCTTGCAAAAAGGCCCTTGAAAAACCTCCAAATTA
194 CCCAAATCAAAAAATTAGCTGATAAAATATGCTTGCAAAAAGGCCCTTGAAAAACCTCCAAATTA
* *
80796869 CGTTTAAACCCCATCTTTATTTTAGGCTTTGTAGATTTGCCCCAGTCTATTTTTAGCAAGGTTGA
259 CGTTCAAACCCCATCTTTATTTTAGGCTTTGTAGATTTGCCCCAGCCTATTTTTAGCAAGGTTGA
* ***
80796934 AAGCTTCAACCTTGCCATGTGTGTGGCTGGCCATGGGAGGGCTCTCTTGGCTGCTGAATTTGCTA
324 AAGCTTCAACCTTGACATGTGTGTGGCCAACCATGGGAGGGCTCTCTTGGCTGCTGAATTTGCTA
*
80796999 TTTTTAGCAGCCCTCTTCAGCTTTAAAAGCCACCCTATGCTGCCCATTTCAAGGCATCCCTCAAC
389 TTTTTAGCAGCCCTCTTCAGCTATAAAAGCCACCCTATGCTGCCCATTTCAAGGCATCCCTCAAC
*
80797064 ATCCCTCATTCCACAACATTCTCTCACCCTCTCTTCACTTATCTCAAAGTTTCCTCTCCA-TTTT
454 ATCCCTCATTCCACAACATTCTCTCACCCTCTCTTCACTTATCTCAAAGTTTCCTCTCAATTTTT
* * *
80797128 CCATCCCATTTTCCCTTCCTCTTGTGCTGATTTCCTCTCTTGAGAAAGAGGAT-ATCTTCAGCCA
519 CCATCCCAGTTTCCCTTCCTCTTGTGCCGATTTCCTCTCTTGAGAAAGAGG-TGATCTTCAACCA
80797192 TCTTGGGCAGCAATCAAGGATTCATAGAAGCCTTG
583 TCTTGGGCAGCAATCAAGGATTCATAGAAGCCTTG
80797227 CTTGCCGAAG
Statistics
Matches: 584, Mismatches: 31, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
652 238 0.41
653 346 0.59
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (649 bp):
CAGCCCAAGACATCCAGAAAACTGGATTAATTCATAATTAAATTAATTTTAATTTATTTCCTATT
TAATTTAGGTTAAATGAATTAATTTTAATTAATTATGAAGAAAGGGCCTAGTGAACCGCACTGGT
TGAACCGAATGAAGTGAGCCAAACCGCCACTAATTGGGCTGACCAGAACCGTCCATTGGCTGACC
CAAATCAAAAAATTAGCTGATAAAATATGCTTGCAAAAAGGCCCTTGAAAAACCTCCAAATTACG
TTCAAACCCCATCTTTATTTTAGGCTTTGTAGATTTGCCCCAGCCTATTTTTAGCAAGGTTGAAA
GCTTCAACCTTGACATGTGTGTGGCCAACCATGGGAGGGCTCTCTTGGCTGCTGAATTTGCTATT
TTTAGCAGCCCTCTTCAGCTATAAAAGCCACCCTATGCTGCCCATTTCAAGGCATCCCTCAACAT
CCCTCATTCCACAACATTCTCTCACCCTCTCTTCACTTATCTCAAAGTTTCCTCTCAATTTTTCC
ATCCCAGTTTCCCTTCCTCTTGTGCCGATTTCCTCTCTTGAGAAAGAGGTGATCTTCAACCATCT
TGGGCAGCAATCAAGGATTCATAGAAGCCTTGAAATCCAAAAAAGAGTACTAAGACCAAGCAAT
Found at i:80810136 original size:50 final size:50
Alignment explanation
Indices: 80810010--80810206 Score: 236
Period size: 49 Copynumber: 3.9 Consensus size: 50
80810000 ATCTATTGTG
* * *
80810010 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * * * **
80810062 A-ATCACGTGTCTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
80810111 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
80810161 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
80810207 GCTTTGGCTA
Statistics
Matches: 124, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
49 44 0.35
50 42 0.34
51 37 0.30
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:80814389 original size:11 final size:11
Alignment explanation
Indices: 80814373--80814398 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
80814363 TAAGTTTATA
80814373 GACAAAAATTG
1 GACAAAAATTG
80814384 GACAAAAATTG
1 GACAAAAATTG
80814395 GACA
1 GACA
80814399 TGGATGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.12, G:0.19, T:0.15
Consensus pattern (11 bp):
GACAAAAATTG
Found at i:80815433 original size:46 final size:46
Alignment explanation
Indices: 80815372--80815641 Score: 321
Period size: 46 Copynumber: 5.8 Consensus size: 46
80815362 GATATTTGGG
* *
80815372 CATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* *
80815418 CATCCTAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* *
80815464 CATCCTAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * * *
80815510 C-GCTCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGGAATGTAT-CTAGG
1 CATC-CGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
*
80815557 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * *
80815603 CGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80815642 GCGGGTTTGC
Statistics
Matches: 191, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
45 2 0.01
46 154 0.81
47 33 0.17
48 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:80815598 original size:93 final size:92
Alignment explanation
Indices: 80815370--80815634 Score: 331
Period size: 93 Copynumber: 2.9 Consensus size: 92
80815360 CGGATATTTG
* * * *
80815370 GGCATCCGAACTTGTTGAGTTGAG-TCTGAGTTCACTTATGGATGCGAAC-ATCCTAACTCGTTG
1 GGCATCCGAACTCGTTGAGTTGAGTTC-GAGTTCACTTATGGATGCGAACGCT-CGAGCTCGTTG
* * *
80815433 AGTTGAGTCCAAGTTCACTTATGGATGCGA
64 AGTTGAGTCCGAGTTC-GTAATGGATGCGA
* * * *
80815463 -ACATCCTAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACGCTCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCTCGAGCTCGTTGAG
* *
80815527 TTGAGTCCGAGTTCGTGGAATGTAT-CTA
66 TTGAGTCCGAGTTCGT--AATGGATGCGA
*
80815555 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCTCGAGCTCGTTGAG
80815620 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
80815635 CTTATGGGCG
Statistics
Matches: 149, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
91 1 0.01
92 67 0.45
93 81 0.54
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCTCGAGCTCGTTGAG
TTGAGTCCGAGTTCGTAATGGATGCGA
Found at i:80824990 original size:22 final size:24
Alignment explanation
Indices: 80824965--80825008 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
80824955 AAAAAATTAT
80824965 TAAATAATAT-TTAT-TTTTATGA
1 TAAATAATATATTATGTTTTATGA
*
80824987 TAAATATTATATTATGTTTTAT
1 TAAATAATATATTATGTTTTAT
80825009 TTTTGAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (24 bp):
TAAATAATATATTATGTTTTATGA
Found at i:80825192 original size:24 final size:24
Alignment explanation
Indices: 80825149--80825195 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
80825139 ATAATAGAAG
80825149 CTACAAAACTAGTAATAATTAACA
1 CTACAAAACTAGTAATAATTAACA
*
80825173 CTACAAAACTCGTAATAATTAAC
1 CTACAAAACTAGTAATAATTAAC
80825196 CATCATGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.51, C:0.19, G:0.04, T:0.26
Consensus pattern (24 bp):
CTACAAAACTAGTAATAATTAACA
Found at i:80828048 original size:124 final size:124
Alignment explanation
Indices: 80827826--80828050 Score: 308
Period size: 124 Copynumber: 1.8 Consensus size: 124
80827816 GAATTATGTG
* * * * * * *
80827826 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
80827891 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
80827950 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* * *
80828015 GTTAAGTCCTGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
80828051 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 3 0.03
124 83 0.97
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:80828172 original size:40 final size:40
Alignment explanation
Indices: 80828045--80828174 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
80828035 TTGCTGGAAA
* * *
80828045 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
80828085 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
80828125 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
80828165 TTATATCCGG
1 TTATATCCGG
80828175 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:80836265 original size:40 final size:40
Alignment explanation
Indices: 80836138--80836267 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
80836128 TTGCTGGAAA
* * *
80836138 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
80836178 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
80836218 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
80836258 TTATATCCGG
1 TTATATCCGG
80836268 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:80838399 original size:3 final size:3
Alignment explanation
Indices: 80838391--80838437 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
80838381 GCTTTAACAT
80838391 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
80838438 TGTTACCAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:80841002 original size:15 final size:14
Alignment explanation
Indices: 80840958--80841009 Score: 61
Period size: 13 Copynumber: 3.7 Consensus size: 14
80840948 AGTTACATGA
80840958 TTTTATAAAATATT
1 TTTTATAAAATATT
* *
80840972 TTTTAT-TACTATT
1 TTTTATAAAATATT
*
80840985 TTTTATAAATTATAT
1 TTTTATAAAATAT-T
80841000 TTTTATAAAA
1 TTTTATAAAA
80841010 GAAAAAACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 11 0.35
14 10 0.32
15 10 0.32
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTATAAAATATT
Found at i:80841002 original size:16 final size:16
Alignment explanation
Indices: 80840976--80841008 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
80840966 AATATTTTTT
80840976 ATTACTATTTTTTATAA
1 ATTACTA-TTTTTATAA
80840993 ATTA-TATTTTTATAA
1 ATTACTATTTTTATAA
80841008 A
1 A
80841009 AGAAAAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.62
16 2 0.12
17 4 0.25
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTACTATTTTTATAA
Found at i:80841707 original size:7 final size:7
Alignment explanation
Indices: 80841691--80841767 Score: 50
Period size: 7 Copynumber: 10.7 Consensus size: 7
80841681 CATAGAATAT
80841691 AACCCATA
1 AACCC-TA
80841699 AACCCTA
1 AACCCTA
80841706 AACCCCTA
1 AA-CCCTA
80841714 AACCCCT-
1 AA-CCCTA
*
80841721 AACCTTA
1 AACCCTA
*
80841728 AACCC-C
1 AACCCTA
80841734 AACCCTTA
1 AACCC-TA
*
80841742 AACCATA
1 AACCCTA
* *
80841749 AATCATA
1 AACCCTA
*
80841756 AATCCTA
1 AACCCTA
80841763 AACCC
1 AACCC
80841768 ATAACCCATG
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
6 8 0.14
7 28 0.49
8 21 0.37
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (7 bp):
AACCCTA
Found at i:80841731 original size:14 final size:14
Alignment explanation
Indices: 80841691--80841745 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
80841681 CATAGAATAT
* *
80841691 AACCCATAAACCCTA
1 AACCCTTAAACCC-C
*
80841706 AACCCCTAAACCCC
1 AACCCTTAAACCCC
80841720 TAA-CCTTAAACCCC
1 -AACCCTTAAACCCC
80841734 AACCCTTAAACC
1 AACCCTTAAACC
80841746 ATAAATCATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
13 2 0.06
14 19 0.54
15 14 0.40
ACGTcount: A:0.40, C:0.45, G:0.00, T:0.15
Consensus pattern (14 bp):
AACCCTTAAACCCC
Found at i:80842070 original size:41 final size:40
Alignment explanation
Indices: 80842008--80842144 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 40
80841998 GGCGTTTTTC
* * *
80842008 AAAAGCGCCGCTAAAAGCTCGATCTATAACGGCGCTTCTGG
1 AAAAACGCCGCTAAAACCTCGATCTATAGCGGCGCTT-TGG
* * * * **
80842049 AAAAACGCCGCTATAACCTCGACCTATAGCAGTGCTTTTCC
1 AAAAACGCCGCTAAAACCTCGATCTATAGCGGCGC-TTTGG
* *
80842090 AGAAGCGCCGCTAAAACCTCGATCTATAGCGGCG-TTTGG
1 AAAAACGCCGCTAAAACCTCGATCTATAGCGGCGCTTTGG
80842129 ACCAAAAACGCCGCTA
1 ---AAAAACGCCGCTA
80842145 TTGCTCAATT
Statistics
Matches: 73, Mismatches: 19, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
39 3 0.04
41 57 0.78
42 13 0.18
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (40 bp):
AAAAACGCCGCTAAAACCTCGATCTATAGCGGCGCTTTGG
Done.