Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 267 of 335
Found at i:80844815 original size:27 final size:28
Alignment explanation
Indices: 80844754--80844826 Score: 121
Period size: 27 Copynumber: 2.6 Consensus size: 28
80844744 TTAAAATTTG
80844754 TACAGCACTAAGTGTGCGAGTTTGATCA
1 TACAGCACTAAGTGTGCGAGTTTGATCA
*
80844782 TACAGCACTAAGTGTGCGAG-TTGATTA
1 TACAGCACTAAGTGTGCGAGTTTGATCA
*
80844809 TATAGCACTAAGTGTGCG
1 TACAGCACTAAGTGTGCG
80844827 GACTCACTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 23 0.53
28 20 0.47
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (28 bp):
TACAGCACTAAGTGTGCGAGTTTGATCA
Found at i:80844837 original size:27 final size:27
Alignment explanation
Indices: 80844757--80844838 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
80844747 AAATTTGTAC
* * *
80844757 AGCACTAAGTGTGCGAGTTTGA-TCATAC
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
80844785 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
80844812 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
80844839 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:80844853 original size:18 final size:18
Alignment explanation
Indices: 80844830--80844872 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
80844820 GTGTGCGGAC
80844830 TCACTATATGCTTTTGAA
1 TCACTATATGCTTTTGAA
80844848 TCACTATATGCTTTTGAA
1 TCACTATATGCTTTTGAA
80844866 TCACTAT
1 TCACTAT
80844873 TGACACTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (18 bp):
TCACTATATGCTTTTGAA
Found at i:80850668 original size:26 final size:24
Alignment explanation
Indices: 80850639--80850687 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
80850629 AAATAAAAAA
*
80850639 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
80850665 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
80850688 AAAATGATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 3 0.14
26 13 0.59
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:80851525 original size:17 final size:18
Alignment explanation
Indices: 80851499--80851546 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
80851489 TTTGGTTAAA
*
80851499 AATTAACCGAATTAACCG
1 AATTACCCGAATTAACCG
*
80851517 -ATTACCCGAATTACCCG
1 AATTACCCGAATTAACCG
*
80851534 AATTACCCAAATT
1 AATTACCCGAATT
80851547 GAATCACTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (18 bp):
AATTACCCGAATTAACCG
Found at i:80851539 original size:9 final size:9
Alignment explanation
Indices: 80851499--80851546 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
80851489 TTTGGTTAAA
*
80851499 AATTAACCG
1 AATTACCCG
*
80851508 AATTAACCG
1 AATTACCCG
80851517 -ATTACCCG
1 AATTACCCG
80851525 AATTACCCG
1 AATTACCCG
*
80851534 AATTACCCA
1 AATTACCCG
80851543 AATT
1 AATT
80851547 GAATCACTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
8 7 0.19
9 29 0.81
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:80851586 original size:37 final size:37
Alignment explanation
Indices: 80851545--80851691 Score: 217
Period size: 37 Copynumber: 4.0 Consensus size: 37
80851535 ATTACCCAAA
**
80851545 TTGAATCACTACATAATTAAAAACATTATGTAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
* *
80851582 TTGAATCACTACATAATTAAAAATATTACATAAGCCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
* *
80851619 ATGAGTCACT--ATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
80851654 TTGAATCACAACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
80851691 T
1 T
80851692 GAAATTAACA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
35 30 0.31
37 67 0.69
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.33
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:80851772 original size:12 final size:12
Alignment explanation
Indices: 80851755--80851781 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
80851745 CATTAAATTT
80851755 ACAAAAAAAAAA
1 ACAAAAAAAAAA
80851767 ACAAAAAAAAAA
1 ACAAAAAAAAAA
80851779 ACA
1 ACA
80851782 TGTGCAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (12 bp):
ACAAAAAAAAAA
Found at i:80854072 original size:28 final size:28
Alignment explanation
Indices: 80854032--80854086 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
80854022 TGGTACTCAG
80854032 TGTACGAAATATTGAGAATGACACTTAA
1 TGTACGAAATATTGAGAATGACACTTAA
*
80854060 TGTACGAGATATTGAGAATGACACTTA
1 TGTACGAAATATTGAGAATGACACTTA
80854087 GTGTGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (28 bp):
TGTACGAAATATTGAGAATGACACTTAA
Found at i:80854099 original size:28 final size:28
Alignment explanation
Indices: 80854032--80854102 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
80854022 TGGTACTCAG
*
80854032 TGTACGAAATATTGAGAATGACACTTAA
1 TGTACAAAATATTGAGAATGACACTTAA
* * *
80854060 TGTACGAGATATTGAGAATGACACTTAG
1 TGTACAAAATATTGAGAATGACACTTAA
80854088 TGTGA-AAAATATTGA
1 TGT-ACAAAATATTGA
80854103 ATGATTAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (28 bp):
TGTACAAAATATTGAGAATGACACTTAA
Found at i:80854219 original size:39 final size:39
Alignment explanation
Indices: 80854175--80854475 Score: 417
Period size: 39 Copynumber: 7.7 Consensus size: 39
80854165 GACTTTATAA
*
80854175 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* ** *
80854214 TGGTGTTATATCTGGGCTAAGTCCTAAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
80854253 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
**
80854292 TGGCATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
80854331 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
80854370 TGGTGTTATATTCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
** *
80854409 TGGTGTTATATCTAGGCTAAAGTCCC-ACAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGA-AGGCATTCGTGC
* *
80854448 TAGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
80854476 CATGCTTTGT
Statistics
Matches: 234, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
39 215 0.92
40 19 0.08
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:80856391 original size:28 final size:27
Alignment explanation
Indices: 80856351--80856409 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 27
80856341 GCTATGATAC
* *
80856351 TTTTGAAGGTTTTGGGAGATTTTAAAT
1 TTTTGAAGGTTTTGAGAGATTTGAAAT
80856378 ATTTTGAAGGTTTTGAGAGATTTGAAAT
1 -TTTTGAAGGTTTTGAGAGATTTGAAAT
80856406 TTTT
1 TTTT
80856410 AATTAGGGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 4 0.14
28 25 0.86
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (27 bp):
TTTTGAAGGTTTTGAGAGATTTGAAAT
Found at i:80856585 original size:13 final size:13
Alignment explanation
Indices: 80856567--80856600 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
80856557 ATTTGTATTG
*
80856567 GGTTGGGTAATTA
1 GGTTGGGTAAATA
*
80856580 GGTTGGGTAAATG
1 GGTTGGGTAAATA
80856593 GGTTGGGT
1 GGTTGGGT
80856601 TTGGTTGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.00, G:0.47, T:0.35
Consensus pattern (13 bp):
GGTTGGGTAAATA
Found at i:80856661 original size:6 final size:6
Alignment explanation
Indices: 80856650--80856675 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
80856640 TTATGTTGGA
80856650 TTGGGT TTGGGT TTGGGT TTGGGT TT
1 TTGGGT TTGGGT TTGGGT TTGGGT TT
80856676 TGTTTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54
Consensus pattern (6 bp):
TTGGGT
Found at i:80856823 original size:18 final size:18
Alignment explanation
Indices: 80856800--80856835 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80856790 TTCGGTTAAC
*
80856800 CGATCGATTAACTGAATT
1 CGATCGATTAACTAAATT
*
80856818 CGATCGGTTAACTAAATT
1 CGATCGATTAACTAAATT
80856836 TTTTTGGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (18 bp):
CGATCGATTAACTAAATT
Found at i:80857398 original size:44 final size:42
Alignment explanation
Indices: 80857330--80857489 Score: 141
Period size: 44 Copynumber: 3.8 Consensus size: 42
80857320 TATGTGTTAT
* *
80857330 CGTGTAAGACCACGTTTGGAACGTTGGCATTGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGA-TT-TGATTTA
80857374 CGTGTAAGACCACGTCTGGGACGTTGGCATCAT-ATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT--TGATTTGATTTA
** *
80857416 CGTGTAAGACC-TTTCTGGGATAG-TGGCATTGATATTTGA-TTA
1 CGTGTAAGACCACGTCTGGGA-CGTTGGCATTG--ATTTGATTTA
* * * *
80857458 CATGTTACACCACGTCTAGGACGTTGGCATTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTG
80857490 TACGAGCTTT
Statistics
Matches: 95, Mismatches: 12, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
39 1 0.01
41 15 0.16
42 27 0.28
43 20 0.21
44 30 0.32
45 1 0.01
46 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATTGATTTGATTTA
Found at i:80857451 original size:42 final size:44
Alignment explanation
Indices: 80857330--80857489 Score: 145
Period size: 42 Copynumber: 3.7 Consensus size: 44
80857320 TATGTGTTAT
* *
80857330 CGTGTAAGACCACGT-TTGGAACGTTGGCATTGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGAA-GTTGGCATTGA-TATTTGATTTA
* *
80857374 CGTGTAAGACCACGTCTGGGACGTTGGCA-TCATATTTGATTT-
1 CGTGTAAGACCACGTCTGGGAAGTTGGCATTGATATTTGATTTA
**
80857416 CGTGTAAGACC-TTTCTGGGATAG-TGGCATTGATATTTGA-TTA
1 CGTGTAAGACCACGTCTGGGA-AGTTGGCATTGATATTTGATTTA
* * * * *
80857458 CATGTTACACCACGTCTAGGACGTTGGCATTG
1 CGTGTAAGACCACGTCTGGGAAGTTGGCATTG
80857490 TACGAGCTTT
Statistics
Matches: 94, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
41 14 0.15
42 31 0.33
43 23 0.24
44 22 0.23
45 4 0.04
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTGGGAAGTTGGCATTGATATTTGATTTA
Found at i:80859750 original size:27 final size:26
Alignment explanation
Indices: 80859690--80859790 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 26
80859680 ATACCCCTAG
* *
80859690 TTGTAAAATTA-CCAAAGTACCCCCGGT
1 TTGTAAAATTACCCAAA-TA-CCTCGAT
*
80859717 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTACCCAAATA-CCTCGAT
* * *
80859744 TTGTAAAATTATCGAAATACAGTCGA-
1 TTGTAAAATTACCCAAATAC-CTCGAT
**
80859770 TTGTAAAATTACTGAAATACC
1 TTGTAAAATTACCCAAATACC
80859791 CCTGTAGGGT
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
26 19 0.31
27 37 0.61
28 5 0.08
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (26 bp):
TTGTAAAATTACCCAAATACCTCGAT
Found at i:80859780 original size:26 final size:27
Alignment explanation
Indices: 80859739--80859789 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
80859729 CCAAATATCC
80859739 TCGATTTGTAAAATTA-TCGAAATACAG
1 TCGATTTGTAAAATTACT-GAAATACAG
80859766 TCGA-TTGTAAAATTACTGAAATAC
1 TCGATTTGTAAAATTACTGAAATAC
80859790 CCCTGTAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (27 bp):
TCGATTTGTAAAATTACTGAAATACAG
Found at i:80859809 original size:27 final size:27
Alignment explanation
Indices: 80859776--80860115 Score: 421
Period size: 27 Copynumber: 12.6 Consensus size: 27
80859766 TCGATTGTAA
80859776 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
80859803 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
80859830 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
80859857 AATTACTGAAATAACCCTGTAAAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
80859884 AATTACCGAAATACCCCTTTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
80859911 AATTACTTAAATACCCTTGTCA-AGTAG
1 AATTACTGAAATACCCCTGT-AGGGTAG
**
80859938 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* ** *
80859965 AATTACTGAAATACCCCTATAAAGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
80859992 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
80860019 AATTACTGAAATACCCCTATAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
*
80860046 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
80860073 AAATACTAAAATACCCCTATACGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
80860100 AATTACTGAGATACCC
1 AATTACTGAAATACCC
80860116 TCATGGGGTA
Statistics
Matches: 261, Mismatches: 50, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.00
27 259 0.99
28 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:80860493 original size:22 final size:22
Alignment explanation
Indices: 80860468--80860519 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
80860458 TCAATGGCCC
80860468 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
80860490 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
80860512 CGTGCCAA
1 TGTGCCAA
80860520 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:80860707 original size:27 final size:27
Alignment explanation
Indices: 80860677--80860785 Score: 89
Period size: 27 Copynumber: 4.1 Consensus size: 27
80860667 ATTCTGTTAA
* *
80860677 GTGGCTTTGCCAC-ATTATCTGTTTCTG
1 GTGGCTATGCCACAAATATCTG-TTCTG
80860704 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCACAAATATCTGTTCTG
* * * * *
80860731 GTGGCTCTGCCGC-AACATCTATATCTA
1 GTGGCTATGCCACAAATATCTGT-TCTG
* * *
80860758 GTGACTCTGTCAC-AATATCTGTTCTG
1 GTGGCTATGCCACAAATATCTGTTCTG
80860784 GT
1 GT
80860786 AGCCATGCTG
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 12 0.18
27 48 0.72
28 7 0.10
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAAATATCTGTTCTG
Found at i:80860933 original size:25 final size:25
Alignment explanation
Indices: 80860902--80861042 Score: 187
Period size: 25 Copynumber: 5.7 Consensus size: 25
80860892 TTGCATTCAC
80860902 ATTCTGATTTTGATTCTGTTACCTG
1 ATTCTGATTTTGATTCTGTTACCTG
* * *
80860927 ATACTGATTTTGATTCTGTCACCTA
1 ATTCTGATTTTGATTCTGTTACCTG
80860952 ATTCTGATTTTGATTCTGTTACCTG
1 ATTCTGATTTTGATTCTGTTACCTG
* * *
80860977 ATACTGATTTTGATTCTGTCACCTA
1 ATTCTGATTTTGATTCTGTTACCTG
*
80861002 ATTCTGATTCTGATTCTGATT--CTG
1 ATTCTGATTTTGATTCTG-TTACCTG
*
80861026 ATTCTCATTTTGATTCT
1 ATTCTGATTTTGATTCT
80861043 AGTTCTGATA
Statistics
Matches: 100, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
24 17 0.17
25 82 0.82
26 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (25 bp):
ATTCTGATTTTGATTCTGTTACCTG
Found at i:80860977 original size:50 final size:50
Alignment explanation
Indices: 80860902--80861042 Score: 232
Period size: 50 Copynumber: 2.8 Consensus size: 50
80860892 TTGCATTCAC
80860902 ATTCTGATTTTGATTCTGTTACCTGATACTGATTTTGATTCTGTCACCTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTGATTTTGATTCTGTCACCTA
80860952 ATTCTGATTTTGATTCTGTTACCTGATACTGATTTTGATTCTGTCACCTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTGATTTTGATTCTGTCACCTA
* * *
80861002 ATTCTGATTCTGATTCTGATT--CTGATTCTCATTTTGATTCT
1 ATTCTGATTTTGATTCTG-TTACCTGATACTGATTTTGATTCT
80861043 AGTTCTGATA
Statistics
Matches: 87, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
49 18 0.21
50 67 0.77
51 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (50 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTGATTTTGATTCTGTCACCTA
Found at i:80861013 original size:6 final size:6
Alignment explanation
Indices: 80860902--80861051 Score: 76
Period size: 6 Copynumber: 24.3 Consensus size: 6
80860892 TTGCATTCAC
* * * * *
80860902 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * * *
80860952 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
80861002 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
80861050 AT
1 AT
80861052 AATGTTTCTT
Statistics
Matches: 106, Mismatches: 24, Indels: 28
0.67 0.15 0.18
Matches are distributed among these distances:
5 7 0.07
6 84 0.79
7 11 0.10
8 4 0.04
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:80861099 original size:31 final size:32
Alignment explanation
Indices: 80861064--80861128 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 32
80861054 TGTTTCTTAT
80861064 TCTG-TAATGGGCTAAAGCCC-ATCTGATACTG
1 TCTGTTAATGGGCTAAAGCCCAAT-TGATACTG
*
80861095 TCTGTTATAATGGGCTAAGGCCCAATTGATACTG
1 TCTG-T-TAATGGGCTAAAGCCCAATTGATACTG
80861129 AAACTGTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 4 0.14
34 23 0.79
35 2 0.07
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (32 bp):
TCTGTTAATGGGCTAAAGCCCAATTGATACTG
Found at i:80865128 original size:48 final size:48
Alignment explanation
Indices: 80865073--80865239 Score: 145
Period size: 48 Copynumber: 3.6 Consensus size: 48
80865063 CACATAATAA
** *
80865073 GATGCCAATGCCATATCCCAGATATGGTCCTACATGGGATCAGCACTC
1 GATGCCAATGCCATATCCCAGATATGGTCCTACATAAGATCAACACTC
* * * * * *
80865121 GATGCCAATGCCATGTCCTAGACATGGTCTTACATCAGATC-TCA-T-
1 GATGCCAATGCCATATCCCAGATATGGTCCTACATAAGATCAACACTC
80865166 -AT--CAATGCCATATCCCAGATATGGT-CTA-ATAAGAT-AACACATACC
1 GATGCCAATGCCATATCCCAGATATGGTCCTACATAAGATCAACAC-T--C
**
80865211 GATGCTGATGCCATATCCCAGATATGGTC
1 GATGCCAATGCCATATCCCAGATATGGTC
80865240 TTATACGGGA
Statistics
Matches: 94, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
40 8 0.09
41 2 0.02
42 21 0.22
44 2 0.02
46 3 0.03
47 2 0.02
48 56 0.60
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCCTACATAAGATCAACACTC
Found at i:80865255 original size:90 final size:90
Alignment explanation
Indices: 80865078--80865242 Score: 210
Period size: 90 Copynumber: 1.8 Consensus size: 90
80865068 AATAAGATGC
** * * *
80865078 CAATGCCATATCCCAGATATGGTCCTACATGGGATCAGCACTCGATGCCAATGCCATGTCCTAGA
1 CAATGCCATATCCCAGATATGGTCCTACATAAGATCAACACTCGATGCCAATGCCATATCCCAGA
80865143 CATGGTCTTACATCAGATCTCATAT
66 CATGGTCTTACATCAGATCTCATAT
**
80865168 CAATGCCATATCCCAGATATGGT-CTA-ATAAGAT-AACACATACCGATGCTGATGCCATATCCC
1 CAATGCCATATCCCAGATATGGTCCTACATAAGATCAACAC-T--CGATGCCAATGCCATATCCC
*
80865230 AGATATGGTCTTA
63 AGACATGGTCTTA
80865243 TACGGGATCT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
87 4 0.06
88 6 0.09
89 3 0.05
90 51 0.80
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (90 bp):
CAATGCCATATCCCAGATATGGTCCTACATAAGATCAACACTCGATGCCAATGCCATATCCCAGA
CATGGTCTTACATCAGATCTCATAT
Found at i:80867456 original size:27 final size:27
Alignment explanation
Indices: 80867422--80867622 Score: 258
Period size: 27 Copynumber: 7.4 Consensus size: 27
80867412 TGAATAAGTT
*
80867422 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
80867449 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
80867476 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
80867503 GTAGAATTACCGAAATACCCCTTGTAGG
1 GTAGAATTACCGAAATACCCC-TGTAGG
* * * *
80867531 ATAGAATTATCGAAATACCCTTTTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
80867558 GTAGAAATACCAAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
80867585 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
80867612 GTAAAATTACC
1 GTAGAATTACC
80867623 ATTTTGCCCC
Statistics
Matches: 149, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 125 0.84
28 24 0.16
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:80867558 original size:82 final size:82
Alignment explanation
Indices: 80867422--80867622 Score: 255
Period size: 82 Copynumber: 2.5 Consensus size: 82
80867412 TGAATAAGTT
* *
80867422 GTAGAATTACCGAAATACCCC-TGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAT
1 GTAGAATTACCGAAATACCCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
** *
80867486 TGAAATACCCCTGTAGG
66 CAAAATACCCCTATAGG
* * *
80867503 GTAGAATTACCGAAATACCCCTTGT-AGGATAGAATTATCGAAATACCCTTTTAGGGTAGAAATA
1 GTAGAATTACCGAAATACCCCTTGTAAGG-TAGAATTACCGAAATACCCCTGTAGGGTAGAAATA
80867567 CCAAAATACCCCTATAGG
65 CCAAAATACCCCTATAGG
* * ** *
80867585 GTAGAATTACTGAGATA-CCCTTGTGGGGTAAAATTACC
1 GTAGAATTACCGAAATACCCCTTGTAAGGTAGAATTACC
80867623 ATTTTGCCCC
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
81 39 0.38
82 65 0.62
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (82 bp):
GTAGAATTACCGAAATACCCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
CAAAATACCCCTATAGG
Found at i:80867633 original size:109 final size:109
Alignment explanation
Indices: 80867423--80867622 Score: 292
Period size: 109 Copynumber: 1.8 Consensus size: 109
80867413 GAATAAGTTG
* * * *
80867423 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTG
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTACTG
*
80867488 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTTGTAGGA
66 AAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTTGTAGGA
* * * *
80867532 TAGAATTATCGAAATACCCTTTTAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTACTG
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTACTG
* * *
80867597 AGATACCCTTGTGGGGTAAAATTACC
66 AAATACCCCTGTAGGGTAAAATTACC
80867623 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
109 79 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (109 bp):
TAGAATTACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTACTG
AAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTTGTAGGA
Found at i:80868364 original size:2 final size:2
Alignment explanation
Indices: 80868357--80868384 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
80868347 GCTTCGCCAC
80868357 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80868385 TTGTTCTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80869723 original size:27 final size:27
Alignment explanation
Indices: 80869692--80870050 Score: 470
Period size: 27 Copynumber: 13.3 Consensus size: 27
80869682 GGGCATAATC
* *
80869692 GTCATTTTACCATGA-AGGGGTATTACA
1 GTCATTTTACCAT-ACAGGGGCATTACG
*
80869719 GTCATTTTACCATATAGGGGCATTACG
1 GTCATTTTACCATACAGGGGCATTACG
* *
80869746 ATCATTTTATCC-TACAGGGGCATTACA
1 GTCATTTTA-CCATACAGGGGCATTACG
80869773 GTCATTTTACCATACAGGGGCATTACG
1 GTCATTTTACCATACAGGGGCATTACG
80869800 GTCATTTTACCATACAGGGGCATTACG
1 GTCATTTTACCATACAGGGGCATTACG
80869827 GTCATTTTACCATACAGGGGCATTACG
1 GTCATTTTACCATACAGGGGCATTACG
* * *
80869854 GTCATTTTACCCTATAGGGGCATTATG
1 GTCATTTTACCATACAGGGGCATTACG
* * * *
80869881 GTTATTATACCCTACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGCATTACG
*
80869908 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCATACAGGGGCATTACG
* *
80869935 GTCATTTTACCCTACAGCGGCATTACG
1 GTCATTTTACCATACAGGGGCATTACG
* *
80869962 GTCATTTTACCTTACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGCATTACG
* * * *
80869989 ATCATTTTACCCTATAGGGGCATTATG
1 GTCATTTTACCATACAGGGGCATTACG
** *
80870016 GTCATTTTACGTTATAGGGGCATTACG
1 GTCATTTTACCATACAGGGGCATTACG
80870043 GTCATTTT
1 GTCATTTT
80870051 GCCTAGTTTA
Statistics
Matches: 298, Mismatches: 31, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
26 3 0.01
27 293 0.98
28 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCATTACG
Found at i:80870197 original size:17 final size:17
Alignment explanation
Indices: 80870175--80870213 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
80870165 TCAACCCAAA
80870175 TGGCCTACACGCTCGTG
1 TGGCCTACACGCTCGTG
*
80870192 TGGCCTACATGCTCGTG
1 TGGCCTACACGCTCGTG
80870209 TGGCC
1 TGGCC
80870214 CATTTAGCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.10, C:0.33, G:0.31, T:0.26
Consensus pattern (17 bp):
TGGCCTACACGCTCGTG
Found at i:80873008 original size:50 final size:50
Alignment explanation
Indices: 80872900--80873035 Score: 177
Period size: 50 Copynumber: 2.8 Consensus size: 50
80872890 AGATATCAAC
* * * * *
80872900 GCCATATCCCAAATATGGTCTTACATGGGATCAC-CA-CTCGATGCCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGATCTCATATCTAGATGCCAAT
* *
80872948 GCCATGTCCCAGACATGGTCTTACATGGGATCTCATATGTAGATGCCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGATCTCATATCTAGATGCCAAT
* *
80872998 GCCATATCCCAGACATGGTCTTACTTGGGAACTCATAT
1 GCCATATCCCAGACATGGTCTTACATGGGATCTCATAT
80873036 TAACACCATA
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
48 30 0.39
49 1 0.01
50 45 0.59
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (50 bp):
GCCATATCCCAGACATGGTCTTACATGGGATCTCATATCTAGATGCCAAT
Found at i:80883677 original size:14 final size:15
Alignment explanation
Indices: 80883658--80883687 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
80883648 ATATTTGACT
80883658 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
80883672 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
80883687 T
1 T
80883688 TCTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:80889249 original size:55 final size:55
Alignment explanation
Indices: 80889184--80889293 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
80889174 TGTATGGTAA
*
80889184 CCTTGTATTTGAAATTTGAAATTCAAACACAAACTACTTGATCTTATCCTTGAAG
1 CCTTGTATTTGAAATTTGAAATTCAAACACAAACTACATGATCTTATCCTTGAAG
*
80889239 CCTTGTATTTGAAATTTGAAATTCAAACACAAACTAGATGATCTTATCCTTGAAG
1 CCTTGTATTTGAAATTTGAAATTCAAACACAAACTACATGATCTTATCCTTGAAG
80889294 TTGACACCAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (55 bp):
CCTTGTATTTGAAATTTGAAATTCAAACACAAACTACATGATCTTATCCTTGAAG
Found at i:80894895 original size:16 final size:16
Alignment explanation
Indices: 80894874--80894907 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
80894864 CACAAGTTTC
80894874 TTTTCTT-TTTTTATTT
1 TTTTCTTCTTTTT-TTT
80894890 TTTTCTTCTTTTTTTT
1 TTTTCTTCTTTTTTTT
80894906 TT
1 TT
80894908 AAATTTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTCTTCTTTTTTTT
Found at i:80895784 original size:55 final size:55
Alignment explanation
Indices: 80895695--80895803 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
80895685 TGTATGGCAA
80895695 CCTTGTATTTGAAATTTAAAATTCAAACACAAACTACTTGATCTTATCCTTGAAG
1 CCTTGTATTTGAAATTTAAAATTCAAACACAAACTACTTGATCTTATCCTTGAAG
* *
80895750 CCTTGTATTTGAAATTTGAAATTCAAACATAAACTACTTGATCTTATCCTTGAA
1 CCTTGTATTTGAAATTTAAAATTCAAACACAAACTACTTGATCTTATCCTTGAA
80895804 ATTGACGCCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (55 bp):
CCTTGTATTTGAAATTTAAAATTCAAACACAAACTACTTGATCTTATCCTTGAAG
Found at i:80900326 original size:38 final size:38
Alignment explanation
Indices: 80900275--80900549 Score: 444
Period size: 38 Copynumber: 7.3 Consensus size: 38
80900265 ATATTTGATG
*
80900275 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
80900313 TATATCCTGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
80900351 TATATCCGGGTTAAATCCCGCAGGCTTCATGC-GGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
80900388 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
80900426 TATATCCGGGTTAAATCCCGCAAGCTTCGTGTTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
80900464 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
80900502 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTAGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
80900540 TATATTCGGG
1 TATATCCGGG
80900550 CCTTTGAGCC
Statistics
Matches: 221, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
37 35 0.16
38 186 0.84
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:80900473 original size:113 final size:114
Alignment explanation
Indices: 80900275--80900549 Score: 462
Period size: 113 Copynumber: 2.4 Consensus size: 114
80900265 ATATTTGATG
* * *
80900275 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCTGGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAAGCTT
80900340 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGC-GGTAT
66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAT
80900388 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAAGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAAGCTT
* *
80900453 CGTGTTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAT
* * * *
80900502 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTAGTATTATATTCGGG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG
80900550 CCTTTGAGCC
Statistics
Matches: 152, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
113 103 0.68
114 49 0.32
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (114 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAAGCTT
CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAT
Found at i:80902203 original size:14 final size:14
Alignment explanation
Indices: 80902184--80902220 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
80902174 ATTTGAATTG
80902184 TTCTTAATTATGTT
1 TTCTTAATTATGTT
80902198 TTCTTAATTATGTT
1 TTCTTAATTATGTT
80902212 TTCTTAATT
1 TTCTTAATT
80902221 CTTTGTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.22, C:0.08, G:0.05, T:0.65
Consensus pattern (14 bp):
TTCTTAATTATGTT
Found at i:80915330 original size:27 final size:27
Alignment explanation
Indices: 80915292--80915345 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
80915282 GAAGTTTCAC
80915292 TTCTCTCCCTATCTTATGATTATGAAT
1 TTCTCTCCCTATCTTATGATTATGAAT
80915319 TTCTCTCCCTATCTTATGATTATGAAT
1 TTCTCTCCCTATCTTATGATTATGAAT
80915346 CTATCCTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.48
Consensus pattern (27 bp):
TTCTCTCCCTATCTTATGATTATGAAT
Found at i:80935369 original size:40 final size:40
Alignment explanation
Indices: 80935319--80935509 Score: 199
Period size: 39 Copynumber: 4.8 Consensus size: 40
80935309 GCTACTCGTT
* * * ***
80935319 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
80935359 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * * *
80935399 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
80935438 CCATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
80935477 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
80935510 TTCGCACATT
Statistics
Matches: 134, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 89 0.66
40 45 0.34
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:80935444 original size:39 final size:39
Alignment explanation
Indices: 80935357--80935509 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
80935347 TGGTAACCCG
* * *
80935357 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCG
1 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCA
* *
80935397 CACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
*
80935436 CACCATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
80935475 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
80935510 TTCGCACATT
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 89 0.86
40 15 0.14
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (39 bp):
CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
Found at i:80943346 original size:39 final size:39
Alignment explanation
Indices: 80943265--80943427 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
80943255 TATGGTAACC
* *
80943265 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
80943305 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
80943344 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
80943383 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
80943422 CGCACA
1 CGCACA
80943428 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:80950592 original size:40 final size:41
Alignment explanation
Indices: 80950543--80950669 Score: 133
Period size: 40 Copynumber: 3.2 Consensus size: 41
80950533 CGGGATTTAA
*
80950543 CCGGATATAGCT-ACTCGCGTC-GAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCG-CACAATGCCTTCGGGACATAGC
*
80950584 CCGG-TATAGTAACTCGCGCACAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCGCACAATGCCTTCGGGACATAGC
* *
80950624 CCGGATATCA--AACTCGCACA-AATGCCTTC-GGAGCTTAGC
1 CCGGATAT-AGTAACTCGCGCACAATGCCTTCGGGA-CATAGC
80950663 CCGGATA
1 CCGGATA
80950670 GTCATAGCCA
Statistics
Matches: 78, Mismatches: 3, Indels: 12
0.84 0.03 0.13
Matches are distributed among these distances:
38 3 0.04
39 24 0.31
40 43 0.55
41 7 0.09
42 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (41 bp):
CCGGATATAGTAACTCGCGCACAATGCCTTCGGGACATAGC
Found at i:80950661 original size:39 final size:38
Alignment explanation
Indices: 80950565--80950709 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 38
80950555 ACTCGCGTCG
*
80950565 AATGCCTTCGGGACATAGCCCGG-TAT-AGTAACTCGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATATCA--AACTCGC-CA
80950604 CAATGCCTTCGGGACTTAGCCCGGATATCAAACTCGCACA
1 -AATGCCTTCGGGACTTAGCCCGGATATCAAACTCGC-CA
*
80950644 AATGCCTTC-GGAGCTTAGCCCGGATAGTC--A-TAGCCA
1 AATGCCTTCGGGA-CTTAGCCCGGATA-TCAAACTCGCCA
80950680 AATTGCCTT-GGGACTTAGCCCGGATTATCA
1 AA-TGCCTTCGGGACTTAGCCCGGA-TATCA
80950710 TCCAACAAAT
Statistics
Matches: 94, Mismatches: 3, Indels: 19
0.81 0.03 0.16
Matches are distributed among these distances:
36 17 0.18
37 14 0.15
38 4 0.04
39 22 0.23
40 33 0.35
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (38 bp):
AATGCCTTCGGGACTTAGCCCGGATATCAAACTCGCCA
Found at i:80957312 original size:40 final size:40
Alignment explanation
Indices: 80957229--80957448 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
80957219 ACCCAAGTAT
** * *
80957229 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
80957267 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
80957307 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
80957347 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
80957387 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
80957427 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
80957449 CATTCGAATA
Statistics
Matches: 154, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 125 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:80964178 original size:51 final size:51
Alignment explanation
Indices: 80964123--80964271 Score: 154
Period size: 51 Copynumber: 3.1 Consensus size: 51
80964113 CTACCACATA
* *
80964123 ACATGTAACACATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGTT
1 ACATGTAACGCATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGAT
* * *
80964174 ACATG-AATCGCATCCATTATGAACTCGGACCTCTCAACAAGC-TCGA--AT
1 ACATGTAA-CGCATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGAT
* * *
80964222 AC---T--CGCATCCATAATGAACTCGGACCTCTCAATGAGCTCGGATGCT
1 ACATGTAACGCATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGAT
80964268 ACAT
1 ACAT
80964272 ATCTCACAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
43 31 0.39
44 2 0.03
46 3 0.04
48 3 0.04
50 5 0.06
51 36 0.45
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
ACATGTAACGCATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGAT
Found at i:80965451 original size:19 final size:19
Alignment explanation
Indices: 80965408--80965444 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
80965398 TTTTAATATA
80965408 ACCAATTTTAAGAACACAT
1 ACCAATTTTAAGAACACAT
80965427 ACCAATTTTAAGAACACA
1 ACCAATTTTAAGAACACA
80965445 ATTCAATACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.22, G:0.05, T:0.24
Consensus pattern (19 bp):
ACCAATTTTAAGAACACAT
Found at i:80965645 original size:2 final size:2
Alignment explanation
Indices: 80965638--80965665 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
80965628 ATAGTCGAAC
80965638 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80965666 CAATTATGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80967779 original size:40 final size:39
Alignment explanation
Indices: 80967691--80967883 Score: 246
Period size: 40 Copynumber: 4.8 Consensus size: 39
80967681 GTTATAATAG
*
80967691 CTCGCACAAATGCCTTCGGGACTTA-ACTCGGATTTTGGGAA
1 CTCGCACAAATGCCTTC-GGACTTAGTC-CGGA-TTTGGGAA
80967732 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAA
1 CTCGCACAAATGCCTTCGGA-CTTAGTCCGGATTTGGGAA
80967772 CTCGCACAAATGCCTTCGGACCTTAGTCCGGATTTGGGAA
1 CTCGCACAAATGCCTTCGGA-CTTAGTCCGGATTTGGGAA
* **
80967812 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGA-CTTAGTCCGGATTTGGGAA
* *
80967852 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTC-GGACTTAGTCCGGA
80967884 CATCATTCGA
Statistics
Matches: 140, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
40 103 0.74
41 36 0.26
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGACTTAGTCCGGATTTGGGAA
Found at i:80967829 original size:80 final size:81
Alignment explanation
Indices: 80967691--80967883 Score: 277
Period size: 80 Copynumber: 2.4 Consensus size: 81
80967681 GTTATAATAG
80967691 CTCGCACAAATGCCTTCGGGACTTA-ACTCGGATTTTGGGAACTCGCACAAATGCCTTCGGATCT
1 CTCGCACAAATGCCTTCGGGACTTAGAC-CGGATTTTGGGAACTCGCACAAATGCCTTCGGATCT
*
80967755 TAGTCCGGATTTGGGAA
65 TAGTCCGGATATGGGAA
*
80967772 CTCGCACAAATGCCTTC-GGACCTTAGTCCGGA-TTTGGGAACTCGCACAAATGCCTTCGGATCT
1 CTCGCACAAATGCCTTCGGGA-CTTAGACCGGATTTTGGGAACTCGCACAAATGCCTTCGGATCT
**
80967835 TAGTCCGGATATGGTCA
65 TAGTCCGGATATGGGAA
* *
80967852 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCGGGACTTAGACCGGA
80967884 CATCATTCGA
Statistics
Matches: 102, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
80 65 0.64
81 36 0.35
82 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (81 bp):
CTCGCACAAATGCCTTCGGGACTTAGACCGGATTTTGGGAACTCGCACAAATGCCTTCGGATCTT
AGTCCGGATATGGGAA
Found at i:80970070 original size:28 final size:28
Alignment explanation
Indices: 80970015--80970072 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
80970005 TATAGTAAGT
*
80970015 TCGCACACTTAGTGCTTAATAATCAAAC
1 TCGCACACTTAGTGCTTAACAATCAAAC
*
80970043 TCGCACACTTAGTGC-TATACAATTAAAC
1 TCGCACACTTAGTGCTTA-ACAATCAAAC
80970071 TC
1 TC
80970073 AAAAAATTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.29
Consensus pattern (28 bp):
TCGCACACTTAGTGCTTAACAATCAAAC
Found at i:80976764 original size:2 final size:2
Alignment explanation
Indices: 80976757--80976782 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80976747 ATAGCCGAAC
80976757 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
80976783 CAATTATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80989450 original size:28 final size:29
Alignment explanation
Indices: 80989419--80989517 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
80989409 GTAATAAGCC
80989419 CGCACACTTAGTGCTTA-ATAATCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
80989447 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
80989475 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
80989504 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80989518 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.62
29 18 0.30
30 3 0.05
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:80989637 original size:2 final size:2
Alignment explanation
Indices: 80989632--80989659 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
80989622 ACATACACAC
80989632 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80989660 TATCATTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80991593 original size:14 final size:14
Alignment explanation
Indices: 80991574--80991607 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
80991564 ACAGATGGAT
80991574 TCATATAATTCTTA
1 TCATATAATTCTTA
80991588 TCATATAATTCTTA
1 TCATATAATTCTTA
80991602 T-ATATA
1 TCATATA
80991608 TTATACAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (14 bp):
TCATATAATTCTTA
Found at i:80995724 original size:21 final size:21
Alignment explanation
Indices: 80995700--80995768 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
80995690 AATATTCGTT
80995700 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
* *
80995721 TCTTTTTGTCGAAGTTTCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
80995742 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
80995763 -CTTTTT
1 TCTTTTT
80995769 TCTTTGTGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 6 0.14
21 36 0.86
ACGTcount: A:0.12, C:0.23, G:0.09, T:0.57
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:80999872 original size:80 final size:80
Alignment explanation
Indices: 80999788--80999936 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80999778 TATGGTAACC
* * * *
80999788 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80999852 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80999868 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80999933 CCGG
66 CCGG
80999937 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80999878 original size:40 final size:38
Alignment explanation
Indices: 80999829--80999936 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80999819 ATCACGATTT
*
80999829 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80999869 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80999909 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80999937 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:81005176 original size:40 final size:39
Alignment explanation
Indices: 81005008--81005178 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
81004998 AGAAATTGAA
* *
81005008 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
81005048 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
81005088 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
81005128 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
81005168 TGATATCCGGG
1 TGATATCCGGG
81005179 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:81013193 original size:40 final size:40
Alignment explanation
Indices: 81013025--81013195 Score: 170
Period size: 40 Copynumber: 4.3 Consensus size: 40
81013015 AGAAATTGAA
* *
81013025 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT--
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATAG
* * * * *
81013065 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATAG
* *
81013105 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATAG
* * *
81013145 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATAG
81013185 TGATATCCGGG
1 TGATATCCGGG
81013196 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 3 0.03
40 99 0.91
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATAG
Found at i:81015711 original size:15 final size:15
Alignment explanation
Indices: 81015687--81015716 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81015677 CTAATGTATT
81015687 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
81015702 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
81015717 ACAAGTATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:81019367 original size:46 final size:46
Alignment explanation
Indices: 81019214--81019473 Score: 400
Period size: 46 Copynumber: 5.7 Consensus size: 46
81019204 GGCAACCTGA
81019214 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT-AAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
81019259 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT-AAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
81019304 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
*
81019350 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
*** * *
81019396 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAAT
* * * *
81019442 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
81019474 TCATGTCAAA
Statistics
Matches: 202, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
45 87 0.43
46 115 0.57
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
Found at i:81024568 original size:46 final size:46
Alignment explanation
Indices: 81024501--81024728 Score: 341
Period size: 46 Copynumber: 5.0 Consensus size: 46
81024491 AGTGTGCTCT
81024501 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
81024547 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
81024593 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
81024639 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
81024685 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
81024729 TCATGTCAAA
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 167 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81029404 original size:25 final size:25
Alignment explanation
Indices: 81029367--81029629 Score: 291
Period size: 25 Copynumber: 10.5 Consensus size: 25
81029357 GACCTTAGCA
* *
81029367 TGCTCTCTGATTATTAGCACGTCAG
1 TGCTCTCTAATTATTAGCACGCCAG
*
81029392 TGCTCTCTAATTATTAGCACGTCAG
1 TGCTCTCTAATTATTAGCACGCCAG
* *
81029417 TGCTATCTTATTATTAGCACGCCAG
1 TGCTCTCTAATTATTAGCACGCCAG
* *
81029442 TGCTCTCTGAA-TATTAGCACGCTAA
1 TGCTCTCT-AATTATTAGCACGCCAG
* * *
81029467 TGCTCTCTGAGTATTAGCACGCCAA
1 TGCTCTCTAATTATTAGCACGCCAG
* * *
81029492 TGCTATCTAAATATTAGCACGCTAG
1 TGCTCTCTAATTATTAGCACGCCAG
*
81029517 TGCTCTCTGAA-TATTAGCATGCCAG
1 TGCTCTCT-AATTATTAGCACGCCAG
81029542 TGCTCTCTGAA-TATTAGCACGCCAG
1 TGCTCTCT-AATTATTAGCACGCCAG
* *
81029567 TTCTCTCTGATTATTAGCACGCCAG
1 TGCTCTCTAATTATTAGCACGCCAG
* *
81029592 TGCTCTCTGA-TATTTAGCACGTCAG
1 TGCTCTCTAATTA-TTAGCACGCCAG
*
81029617 TGCTCTCTGATTA
1 TGCTCTCTAATTA
81029630 GCACATTTGT
Statistics
Matches: 209, Mismatches: 23, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
24 4 0.02
25 200 0.96
26 5 0.02
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (25 bp):
TGCTCTCTAATTATTAGCACGCCAG
Found at i:81029449 original size:50 final size:48
Alignment explanation
Indices: 81029367--81029629 Score: 337
Period size: 50 Copynumber: 5.3 Consensus size: 48
81029357 GACCTTAGCA
*
81029367 TGCTCTCTGATTATTAGCACGTCAGTGCTCTCTAATTATTAGCACGTCAG
1 TGCTCTCTGATTATTAGCACGCCAGTGCTCTCTAA-TATTAGCACG-CAG
* * *
81029417 TGCTATCTTATTATTAGCACGCCAGTGCTCTCTGAATATTAGCACGCTAA
1 TGCTCTCTGATTATTAGCACGCCAGTGCTCTCT-AATATTAGCACGC-AG
* * *
81029467 TGCTCTCTGAGTATTAGCACGCCAATGCTATCTAAATATTAGCACGCTAG
1 TGCTCTCTGATTATTAGCACGCCAGTGCTCTCT-AATATTAGCACGC-AG
* *
81029517 TGCTCTCTGAATATTAGCATGCCAGTGCTCTCTGAATATTAGCACGCCAG
1 TGCTCTCTGATTATTAGCACGCCAGTGCTCTCT-AATATTAGCACG-CAG
* *
81029567 TTCTCTCTGATTATTAGCACGCCAGTGCTCTCTGATATTTAGCACGTCAG
1 TGCTCTCTGATTATTAGCACGCCAGTGCTCTCTAATA-TTAGCACG-CAG
81029617 TGCTCTCTGATTA
1 TGCTCTCTGATTA
81029630 GCACATTTGT
Statistics
Matches: 187, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
49 4 0.02
50 180 0.96
51 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (48 bp):
TGCTCTCTGATTATTAGCACGCCAGTGCTCTCTAATATTAGCACGCAG
Found at i:81029457 original size:75 final size:75
Alignment explanation
Indices: 81029367--81029629 Score: 343
Period size: 75 Copynumber: 3.5 Consensus size: 75
81029357 GACCTTAGCA
* * *
81029367 TGCTCTCTGATTATTAGCACGTCAGTGCTCTCTAATTATTAGCACGTCAGTGCTATCTTATTATT
1 TGCTCTCTGAATATTAGCACGTCAGTGCTCTCTAATTATTAGCACGCCAGTGCTATCTAATTATT
81029432 AGCACGCCAG
66 AGCACGCCAG
* * * * *
81029442 TGCTCTCTGAATATTAGCACG-CTAATGCTCTCTGAGTATTAGCACGCCAATGCTATCTAAATAT
1 TGCTCTCTGAATATTAGCACGTC-AGTGCTCTCTAATTATTAGCACGCCAGTGCTATCTAATTAT
*
81029506 TAGCACGCTAG
65 TAGCACGCCAG
* * * * *
81029517 TGCTCTCTGAATATTAGCATGCCAGTGCTCTCTGAA-TATTAGCACGCCAGTTCTCTCTGATTAT
1 TGCTCTCTGAATATTAGCACGTCAGTGCTCTCT-AATTATTAGCACGCCAGTGCTATCTAATTAT
81029581 TAGCACGCCAG
65 TAGCACGCCAG
*
81029592 TGCTCTCTG-ATATTTAGCACGTCAGTGCTCTCTGATTA
1 TGCTCTCTGAATA-TTAGCACGTCAGTGCTCTCTAATTA
81029630 GCACATTTGT
Statistics
Matches: 162, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
74 5 0.03
75 155 0.96
76 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (75 bp):
TGCTCTCTGAATATTAGCACGTCAGTGCTCTCTAATTATTAGCACGCCAGTGCTATCTAATTATT
AGCACGCCAG
Found at i:81029668 original size:20 final size:21
Alignment explanation
Indices: 81029615--81029670 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
81029605 TTAGCACGTC
81029615 AGTGCTCTCTGATTAGCACATTT
1 AGTGCTCTCTG--TAGCACATTT
81029638 -GTGCTCTCTCTGTAGCAC-TTT
1 AGTG--CTCTCTGTAGCACATTT
81029659 AGTGCTCTCTGT
1 AGTGCTCTCTGT
81029671 TCATTAGTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
20 8 0.27
21 3 0.10
22 12 0.40
24 7 0.23
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.41
Consensus pattern (21 bp):
AGTGCTCTCTGTAGCACATTT
Found at i:81030714 original size:46 final size:48
Alignment explanation
Indices: 81030662--81030765 Score: 113
Period size: 46 Copynumber: 2.2 Consensus size: 48
81030652 TATTCAATAT
* * * *
81030662 AGACCATATCTGGGATATGGCATCA-ATGTGATATGTGA-TCTGTGTA
1 AGACCATAGCTGGGATATGGCATCAGATGTGATATATGACTATGTGCA
* * * *
81030708 AGACCATGGCTGGGCTATGGCTTCAGTGTGTGATATATGACTATGTGCA
1 AGACCATAGCTGGGATATGGCATCAG-ATGTGATATATGACTATGTGCA
81030757 AGACCATAG
1 AGACCATAG
81030766 TTTTACTATG
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
46 21 0.46
48 11 0.24
49 14 0.30
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (48 bp):
AGACCATAGCTGGGATATGGCATCAGATGTGATATATGACTATGTGCA
Found at i:81033103 original size:93 final size:93
Alignment explanation
Indices: 81032944--81033129 Score: 372
Period size: 93 Copynumber: 2.0 Consensus size: 93
81032934 AAATTTGAAA
81032944 AATCTAGATATATCATCATTTTTCTTCAGCAAAAACACCATGGGAAGTCTGAAAGCTGCTGGTTT
1 AATCTAGATATATCATCATTTTTCTTCAGCAAAAACACCATGGGAAGTCTGAAAGCTGCTGGTTT
81033009 TTCATACTTTGACATCTGTGAGTTCAAT
66 TTCATACTTTGACATCTGTGAGTTCAAT
81033037 AATCTAGATATATCATCATTTTTCTTCAGCAAAAACACCATGGGAAGTCTGAAAGCTGCTGGTTT
1 AATCTAGATATATCATCATTTTTCTTCAGCAAAAACACCATGGGAAGTCTGAAAGCTGCTGGTTT
81033102 TTCATACTTTGACATCTGTGAGTTCAAT
66 TTCATACTTTGACATCTGTGAGTTCAAT
81033130 TCTTGCCCTT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.35
Consensus pattern (93 bp):
AATCTAGATATATCATCATTTTTCTTCAGCAAAAACACCATGGGAAGTCTGAAAGCTGCTGGTTT
TTCATACTTTGACATCTGTGAGTTCAAT
Found at i:81036705 original size:40 final size:40
Alignment explanation
Indices: 81036652--81036761 Score: 166
Period size: 40 Copynumber: 2.8 Consensus size: 40
81036642 GGATTTAGCT
** *
81036652 GGATATAACAACTCGCACAAATGCCTTTGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTTGGGACTTAACCC
*
81036692 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 GGATATAGTAACTCGCACAAATGCCTTTGGGACTTAACCC
* *
81036732 GGATATAGTCACTAGCACAAATGCCTTTGG
1 GGATATAGTAACTCGCACAAATGCCTTTGG
81036762 ATCTTAGTCC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTTGGGACTTAACCC
Found at i:81040265 original size:46 final size:46
Alignment explanation
Indices: 81040215--81040390 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
81040205 TGTTTGGGCA
*
81040215 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
81040261 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
81040308 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
81040354 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81040391 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 70 0.65
47 35 0.33
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81040370 original size:93 final size:93
Alignment explanation
Indices: 81040211--81040382 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
81040201 AGGATGTTTG
*
81040211 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
81040276 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
81040304 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGA
81040368 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
81040383 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:81050091 original size:39 final size:40
Alignment explanation
Indices: 81049996--81050177 Score: 207
Period size: 39 Copynumber: 4.7 Consensus size: 40
81049986 TCGAATGATG
* *
81049996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA
*
81050035 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGTGAGTTACTATA
* * *
81050074 TTCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTCACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATA
*
81050113 TCCGGGTTAAGTCCCGAAGGCATTTGTG-GAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATA
* *
81050152 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81050178 AACGAAGCTA
Statistics
Matches: 123, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
38 23 0.19
39 74 0.60
40 26 0.21
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATA
Found at i:81052700 original size:39 final size:39
Alignment explanation
Indices: 81052605--81052805 Score: 232
Period size: 40 Copynumber: 5.1 Consensus size: 39
81052595 TCGAATGATG
* *
81052605 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTACTATA
*
81052644 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA
*
81052683 TTCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
*
81052721 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
* * **
81052761 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATA
81052801 TCCGG
1 TCCGG
81052806 TTAAATTCCG
Statistics
Matches: 140, Mismatches: 12, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
37 15 0.11
38 20 0.14
39 41 0.29
40 64 0.46
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
Found at i:81061928 original size:40 final size:40
Alignment explanation
Indices: 81061873--81062040 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
81061863 TGAATGATAC
* **
81061873 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCTAGTGATTATAT
*
81061913 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCTAG-TGATTATAT
* * * **
81061953 CCGAGCTAAGACCCGAAGGCATTCGTGCAAGTTACCGA-AT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCTAGTGA-TTATAT
* * *
81061993 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCTAGTGATTATAT
81062033 CC-GGCTAA
1 CCGGGCTAA
81062041 ATTCCGAAGA
Statistics
Matches: 105, Mismatches: 18, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
39 7 0.07
40 92 0.88
41 6 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCTAGTGATTATAT
Found at i:81064017 original size:39 final size:40
Alignment explanation
Indices: 81063919--81064100 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
81063909 AATGATGTCC
* *
81063919 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCT
*
81063959 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCT
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCT
* * *
81063999 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCT
* * *
81064038 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCT
* *
81064078 AGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
81064101 AACGAGAAGC
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCT
Found at i:81064083 original size:79 final size:81
Alignment explanation
Indices: 81063920--81064098 Score: 215
Period size: 79 Copynumber: 2.2 Consensus size: 81
81063910 ATGATGTCCG
* * *
81063920 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCTGGACTAAGATCCGAAGGCATTTGTG
* **
81063984 CGAGTTACTAATTCTG
66 CGAGTTACTAATACCA
* **
81064000 GGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCTGGGTTAAG-TCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCTGGACTAAGAT-CCGAAGGCATTTGT
81064062 GCGAGTTACT-ATAACCA
65 GCGAGTTACTAAT-ACCA
*
81064079 GGCTATGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
81064099 TGAACGAGAA
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 3 0.04
79 57 0.67
80 25 0.29
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCTGGACTAAGATCCGAAGGCATTTGTG
CGAGTTACTAATACCA
Found at i:81064122 original size:79 final size:79
Alignment explanation
Indices: 81063969--81064133 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
81063959 GGACTAAGAT
* ** ** *
81063969 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTAACTAA
* *
81064034 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
81064048 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-AAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTAA-C
*
81064111 TATATC-CGGTTAAATC
63 TAAATCTCGGTTAAATC
*
81064127 CCAAAGG
1 CCGAAGG
81064134 TACGTGATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.65
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTAACTAA
ATCTCGGTTAAATC
Found at i:81074339 original size:31 final size:31
Alignment explanation
Indices: 81074249--81074342 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 31
81074239 TGGGCGTATT
* **
81074249 GGCCCATATGAGCATGCCATACGGGTGTGTG
1 GGCCCATATGAGCATGCCACACGGGCATGTG
**
81074280 GGCCCATATGAGCATGCCACACAAGCATGTG
1 GGCCCATATGAGCATGCCACACGGGCATGTG
* * *
81074311 GGCCCACACGAGCATGCCACATGGGCATGTG
1 GGCCCATATGAGCATGCCACACGGGCATGTG
81074342 G
1 G
81074343 CCACACAGGC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 53 1.00
ACGTcount: A:0.23, C:0.28, G:0.32, T:0.17
Consensus pattern (31 bp):
GGCCCATATGAGCATGCCACACGGGCATGTG
Found at i:81080850 original size:28 final size:29
Alignment explanation
Indices: 81080819--81080893 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 29
81080809 TTAATAGTCG
*
81080819 AACTCGCACACTTAGTGCTATATAA-TCA
1 AACTCGCACACTTAGTGCTATACAATTCA
* **
81080847 AACTTGCACACTTAGTGCTATACAATTTG
1 AACTCGCACACTTAGTGCTATACAATTCA
*
81080876 AACCCGCACACTTAGTGC
1 AACTCGCACACTTAGTGC
81080894 CAATTTGTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 23 0.57
29 17 0.43
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (29 bp):
AACTCGCACACTTAGTGCTATACAATTCA
Found at i:81086383 original size:24 final size:24
Alignment explanation
Indices: 81086356--81086462 Score: 151
Period size: 24 Copynumber: 4.5 Consensus size: 24
81086346 GAAATGGCTT
81086356 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* *
81086380 TGGCACTATGTGTACGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
81086404 CGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
*
81086428 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* *
81086452 TGTCAATATGT
1 TGGCACTATGT
81086463 ATGTGCATTA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 74 1.00
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:81086462 original size:48 final size:48
Alignment explanation
Indices: 81086357--81086492 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 48
81086347 AAATGGCTTT
* * * * *
81086357 GGCACTATGTGTGCGAATTTGAATGGCACTATGTGTACGAATTTGTAC
1 GGCAATATGTGTGCGAATTTGTATGGCACTATGTGTGCGGATTTGAAC
* *
81086405 GGCACTATGTGTGCGAATTTGTATGGCACTATGTGTGCGGATTTGAAT
1 GGCAATATGTGTGCGAATTTGTATGGCACTATGTGTGCGGATTTGAAC
* * * * ** *
81086453 GTCAATATGTATGTGCATTACTAAGGCACTATGTGTGCGG
1 GGCAATATGTGTGCGAATTTGTATGGCACTATGTGTGCGG
81086493 GTAAACATGG
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.34
Consensus pattern (48 bp):
GGCAATATGTGTGCGAATTTGTATGGCACTATGTGTGCGGATTTGAAC
Found at i:81086481 original size:72 final size:72
Alignment explanation
Indices: 81086356--81086491 Score: 182
Period size: 72 Copynumber: 1.9 Consensus size: 72
81086346 GAAATGGCTT
* * ** *
81086356 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTACGAATTTGTACGGCACTATGTGTGCGA
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATACGAATTACTAAGGCACTATGTGTGCGA
81086421 ATTTGTA
66 ATTTGTA
* * ** *
81086428 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGCATTACTAAGGCACTATGTGTGCG
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATACGAATTACTAAGGCACTATGTGTGCG
81086492 GGTAAACATG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 54 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.35
Consensus pattern (72 bp):
TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATACGAATTACTAAGGCACTATGTGTGCGA
ATTTGTA
Found at i:81087528 original size:18 final size:18
Alignment explanation
Indices: 81087505--81087542 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
81087495 AATGGATATG
81087505 ATAAATCTACAATGCAAT
1 ATAAATCTACAATGCAAT
81087523 ATAAATCTACAATGCAAT
1 ATAAATCTACAATGCAAT
81087541 AT
1 AT
81087543 TTACTTAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (18 bp):
ATAAATCTACAATGCAAT
Found at i:81092476 original size:28 final size:28
Alignment explanation
Indices: 81092416--81092477 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
81092406 AATGACCAAA
* *
81092416 ATACCCCTAAGGGGTAAAAATTACTATT
1 ATACCTCTAAGGGGTAAAAATGACTATT
* * * *
81092444 CTACCTCTAATGGGTGAAAATGACTGTT
1 ATACCTCTAAGGGGTAAAAATGACTATT
81092472 ATACCT
1 ATACCT
81092478 TAGAGGTAGG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (28 bp):
ATACCTCTAAGGGGTAAAAATGACTATT
Found at i:81095950 original size:27 final size:28
Alignment explanation
Indices: 81095920--81095989 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
81095910 ATAATAAGTC
*
81095920 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
81095947 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
81095975 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81095990 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81103102 original size:27 final size:28
Alignment explanation
Indices: 81103072--81103141 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
81103062 ATAATAAGTC
*
81103072 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
81103099 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
81103127 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81103142 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81106699 original size:30 final size:30
Alignment explanation
Indices: 81106613--81106700 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
81106603 CTAGGTCACT
* *
81106613 TTCAACTCACGAGCTAAACCTTAGCTCAAC
1 TTCAGCTCACGAGCTAAGCCTTAGCTCAAC
* * * * *
81106643 TTCAGCTTAGGAGTTTAGCCTCAGCTCAAC
1 TTCAGCTCACGAGCTAAGCCTTAGCTCAAC
* *
81106673 TTTAGCTCACGAGCTAAGGCTTAGCTCA
1 TTCAGCTCACGAGCTAAGCCTTAGCTCA
81106701 TTTTAGTTTA
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (30 bp):
TTCAGCTCACGAGCTAAGCCTTAGCTCAAC
Found at i:81115161 original size:31 final size:31
Alignment explanation
Indices: 81115125--81115188 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
81115115 TACTGGGCTA
81115125 AAGCCTTTTCATAAATCATATCACTAGGCCG
1 AAGCCTTTTCATAAATCATATCACTAGGCCG
*
81115156 AAGCCTTTTCATAAATCATATCATTAGGCCG
1 AAGCCTTTTCATAAATCATATCACTAGGCCG
81115187 AA
1 AA
81115189 ATCTTTACTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.30
Consensus pattern (31 bp):
AAGCCTTTTCATAAATCATATCACTAGGCCG
Found at i:81115483 original size:51 final size:52
Alignment explanation
Indices: 81115400--81115534 Score: 217
Period size: 51 Copynumber: 2.7 Consensus size: 52
81115390 CTGGAGGCTT
*
81115400 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATA
81115449 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATA
81115501 AG-CCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
81115535 GCACTTCCTC
Statistics
Matches: 81, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 10 0.12
51 56 0.69
52 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATA
Found at i:81115484 original size:26 final size:26
Alignment explanation
Indices: 81115400--81115534 Score: 181
Period size: 25 Copynumber: 5.3 Consensus size: 26
81115390 CTGGAGGCTT
81115400 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
81115424 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
81115449 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** *
81115475 AGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
81115501 AG-CCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
81115526 AGCCCTTTT
1 AGCCCTTTT
81115535 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 55 0.57
26 32 0.33
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:81116433 original size:27 final size:27
Alignment explanation
Indices: 81116338--81116424 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
81116328 CATTCGCCAT
* * *
81116338 TTTACCATACAGGGG-TATTACAGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
81116365 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
*
81116392 TTTACCCTACAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
81116419 TTTACC
1 TTTACC
81116425 TAATAGGGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:81116592 original size:27 final size:27
Alignment explanation
Indices: 81116541--81116815 Score: 243
Period size: 27 Copynumber: 10.2 Consensus size: 27
81116531 TAGAAAGTCA
* * **
81116541 AGGGTATTTTTGTAACTTTGTAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCG
81116567 AGGCGTATTTTGGTAATTTTACAAATCG
1 AGG-GTATTTTGGTAATTTTACAAATCG
* ** * *
81116595 AAGGTATTTCAGTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTACAAATCG
*
81116621 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTACAAATCG
**
81116648 AGGGGTATTTTGGTAATTTTACAAATTA
1 A-GGGTATTTTGGTAATTTTACAAATCG
* * *
81116676 AGGGTATTTCGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * *
81116703 AGGGTATTTTAGCAATTTTACAGA-CT
1 AGGGTATTTTGGTAATTTTACAAATCG
**
81116729 AGGGTATTTTGGTAATTTTACTGATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
** *
81116756 AGGGTATTTTGGTAATTTTGTAAACCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * **
81116783 AGGGTAATTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
81116810 AGGGTA
1 AGGGTA
81116816 AAATAGTAAT
Statistics
Matches: 207, Mismatches: 36, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
26 27 0.13
27 176 0.85
28 4 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:81116657 original size:81 final size:80
Alignment explanation
Indices: 81116571--81116801 Score: 277
Period size: 81 Copynumber: 2.9 Consensus size: 80
81116561 TAAATCAGGC
* * *
81116571 GTATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAACC-AGTGGTATTTTGGT
1 GTATTTTGGTAATTTTACAAATCGAAGGTATTTCGGTAATTTCACAAACCAAG-GGTATTTTAGC
81116635 AATTTTACAAACTAGGG
65 AATTTTACAAACTA-GG
* *
81116652 GTATTTTGGTAATTTTACAAAT-TAAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGC
1 GTATTTTGGTAATTTTACAAATCGAA-GGTATTTCGGTAATTTCACAAACCAAGGGTATTTTAGC
*
81116716 AATTTTACAGACTAGG
65 AATTTTACAAACTAGG
** * * *** * * *
81116732 GTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGTAATTTAGTA
1 GTATTTTGGTAATTTTACAAATCGAAGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTAGCA
81116797 ATTTT
66 ATTTT
81116802 GTAAATCGAG
Statistics
Matches: 131, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
80 62 0.47
81 67 0.51
82 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
GTATTTTGGTAATTTTACAAATCGAAGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTAGCA
ATTTTACAAACTAGG
Found at i:81116816 original size:27 final size:27
Alignment explanation
Indices: 81116767--81116923 Score: 172
Period size: 27 Copynumber: 5.8 Consensus size: 27
81116757 GGGTATTTTG
* **
81116767 GTAATTTTGTAAACCGAGGGTAATTTA
1 GTAATTTTGTAAATCGAGGGTAAAATA
81116794 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAATA
* *
81116821 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAATA
* * * **
81116848 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATA
* *
81116875 GTAATTCTGTAAATCGAGGGTAAAA-C
1 GTAATTTTGTAAATCGAGGGTAAAATA
* *
81116901 GATAATTCTATAAATCGAGGGTA
1 G-TAATTTTGTAAATCGAGGGTA
81116924 CTTTGGTAAT
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 114 0.99
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAATA
Found at i:81116933 original size:81 final size:81
Alignment explanation
Indices: 81116752--81116934 Score: 179
Period size: 81 Copynumber: 2.3 Consensus size: 81
81116742 AATTTTACTG
* * * *** *
81116752 ATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGTAATTTAGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTCTATAAACCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
* * *
81116817 AATAGTAATTTTGTAA
66 AAGAGTAATTCTATAA
* **** ** *
81116833 ATCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTCTATAAACCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
81116898 AACGA-TAATTCTATAA
66 AA-GAGTAATTCTATAA
*
81116914 ATCGAGGGTACTTTGGTAATT
1 ATCGAGGGTAATTTGGTAATT
81116935 TTACAATTTG
Statistics
Matches: 77, Mismatches: 24, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
81 76 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTCTATAAACCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
AAGAGTAATTCTATAA
Found at i:81117154 original size:17 final size:17
Alignment explanation
Indices: 81117134--81117177 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
81117124 AACTTATCCA
81117134 ATTGGGCCCATAGGCCC
1 ATTGGGCCCATAGGCCC
81117151 ATTGGGCCCATAGGCCC
1 ATTGGGCCCATAGGCCC
81117168 ATTGGGCCCA
1 ATTGGGCCCA
81117178 CATGACCCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (17 bp):
ATTGGGCCCATAGGCCC
Found at i:81117160 original size:9 final size:9
Alignment explanation
Indices: 81117134--81117177 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
81117124 AACTTATCCA
81117134 ATTGGGCCC
1 ATTGGGCCC
*
81117143 A-TAGGCCC
1 ATTGGGCCC
81117151 ATTGGGCCC
1 ATTGGGCCC
*
81117160 A-TAGGCCC
1 ATTGGGCCC
81117168 ATTGGGCCC
1 ATTGGGCCC
81117177 A
1 A
81117178 CATGACCCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 14 0.48
9 15 0.52
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (9 bp):
ATTGGGCCC
Found at i:81119294 original size:31 final size:31
Alignment explanation
Indices: 81119219--81119297 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
81119209 TTTAGCGGTT
*
81119219 ACTGGGCTGAAGCATTTTCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
* *
81119250 ACTGGGCCGAAGCCTTTTTATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
*
81119281 ATTGGGCTGAAGCCTTT
1 ACTGGGCTGAAGCCTTT
81119298 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (31 bp):
ACTGGGCTGAAGCCTTTTCATAAATCATATC
Found at i:81119586 original size:26 final size:26
Alignment explanation
Indices: 81119503--81119638 Score: 163
Period size: 26 Copynumber: 5.3 Consensus size: 26
81119493 CTGGAGGCCT
*
81119503 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTAGGGCATA
** *
81119527 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTAGGGCATA
*
81119552 AGCCCTTTTCAATAAACTAAGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
**
81119578 AGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
*
81119604 AGCCTTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
81119630 AGCCCTTTT
1 AGCCCTTTT
81119639 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 31 0.32
26 55 0.57
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTAGGGCATA
Found at i:81119629 original size:52 final size:51
Alignment explanation
Indices: 81119503--81119638 Score: 197
Period size: 52 Copynumber: 2.7 Consensus size: 51
81119493 CTGGAGGCCT
* *
81119503 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCT-TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
* *
81119552 AGCCCTTTTCAATAAACTAAGGCATAAGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCTTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-A
81119604 AGCCTTTTTCAATAAACTAGGGCATAAGCCCTTTT
1 AGCCTTTTTCAATAAACTAGGGCATAAGCCCTTTT
81119639 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
48 4 0.05
49 7 0.09
50 8 0.10
51 24 0.31
52 34 0.44
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (51 bp):
AGCCTTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
Found at i:81121583 original size:40 final size:40
Alignment explanation
Indices: 81121509--81121650 Score: 158
Period size: 40 Copynumber: 3.5 Consensus size: 40
81121499 CCGCACCAAG
* * * * * *
81121509 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
81121549 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * * *
81121589 GCCTTCGGGTCTTGGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
81121629 GCCTTCGGGTCTTAACCCGGAT
1 GCCTTCGGGTCTTAGCCCGGAT
81121651 GTAATTTTCA
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:81129627 original size:40 final size:40
Alignment explanation
Indices: 81129553--81129694 Score: 167
Period size: 40 Copynumber: 3.5 Consensus size: 40
81129543 CCGCACCAAG
* * * * * *
81129553 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
81129593 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
81129633 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
81129673 GCCTTCGGGTCTTAACCCGGAT
1 GCCTTCGGGTCTTAGCCCGGAT
81129695 GTAATTTTCA
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:81129713 original size:40 final size:40
Alignment explanation
Indices: 81129585--81129736 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
81129575 ATCACGATTT
* * * * *
81129585 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
81129625 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * * **
81129665 GCACAATTGCCTTCGGGTCTTAACCCGGATGTA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
81129705 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
81129737 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.04
40 89 0.94
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:81132013 original size:27 final size:27
Alignment explanation
Indices: 81131919--81132365 Score: 217
Period size: 27 Copynumber: 16.6 Consensus size: 27
81131909 TTAAACCAAT
** * *
81131919 GGTATTTCCATAATTTTTAGAAAGTCAAG
1 GGTATTTCGGTAA-TTTTACAAA-TCGAG
* * **
81131948 GGTATTTCTGTAACTTTGTAAATC-AG
1 GGTATTTCGGTAATTTTACAAATCGAG
* **
81131974 GGGATTTTAGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
81132001 GGTATTTCGGTAATTTCACAAA-CCAG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
81132027 TGGTATCTT-GGTAATTTTACAAA-CTAGG
1 -GGTAT-TTCGGTAATTTTACAAATCGA-G
* *
81132055 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
81132082 GGTATTTCGGTAATTTTACAAACCAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
** * * *
81132109 GGTATTTTAGCAATTTTACATA-CTAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* **
81132135 GGTATTTTGGTAATTTTACTGATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* **
81132162 GGTATTTTGGTAATTTTGTAAA-CGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
** **
81132188 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
*** * * ** *
81132215 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
** * * *
81132242 GGTAAAAT-AGTAATTCTATAAATCGAG
1 GGT-ATTTCGGTAATTTTACAAATCGAG
*** * **
81132269 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *** * *
81132296 GTTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
81132323 GGTACTTT-GGTAATTTTACAATTTGAA
1 GGTA-TTTCGGTAATTTTACAAATCGAG
*
81132350 GGTATTTCAGTAATTT
1 GGTATTTCGGTAATTT
81132366 GGTAAACTAA
Statistics
Matches: 343, Mismatches: 63, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
26 77 0.22
27 242 0.71
28 13 0.04
29 11 0.03
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Found at i:81132072 original size:81 final size:81
Alignment explanation
Indices: 81131972--81132177 Score: 292
Period size: 81 Copynumber: 2.6 Consensus size: 81
81131962 TTTGTAAATC
*
81131972 AGGGG-ATTTTAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATCT
1 AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCAAG-GGTATCT
* *
81132035 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
* * *
81132052 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATCTT
*
81132117 AGCAATTTTACATACT
66 AGCAATTTTACAAACT
** *
81132133 A-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTT
81132178 TGTAAACGAG
Statistics
Matches: 113, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 45 0.40
81 66 0.58
82 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATCTT
AGCAATTTTACAAACT
Found at i:81132213 original size:53 final size:53
Alignment explanation
Indices: 81131972--81132218 Score: 262
Period size: 54 Copynumber: 4.6 Consensus size: 53
81131962 TTTGTAAATC
* * * * *
81131972 AGGGGATTTTAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACC
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACG
* * *
81132025 AGTGGTATCTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAA-CG
* * * * * * *
81132080 AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACATACT
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACG
** **
81132133 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACG
* **
81132186 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTA
81132219 AAACAGTAAT
Statistics
Matches: 158, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
53 74 0.47
54 80 0.51
55 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACG
Found at i:81136512 original size:45 final size:46
Alignment explanation
Indices: 81136448--81136622 Score: 225
Period size: 45 Copynumber: 3.8 Consensus size: 46
81136438 TGTAACCCGC
*
81136448 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
81136493 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
81136543 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
81136586 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81136623 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 37 0.33
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:81136614 original size:93 final size:92
Alignment explanation
Indices: 81136456--81136626 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
81136446 GCCCATAAGT
*
81136456 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
81136521 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
81136548 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81136613 CGAGTTCGGATGCC
65 CGAGTTCGGATGCC
81136627 CAAATATCCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 27 0.36
93 49 0.64
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81136641 original size:46 final size:45
Alignment explanation
Indices: 81136453--81136628 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 45
81136443 CCCGCCCATA
* * * * * *
81136453 AGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCCATACATCC
*
81136498 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-C
* * * * *
81136546 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCC
81136591 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
81136629 AATATCCCAG
Statistics
Matches: 108, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
44 8 0.07
45 31 0.29
46 32 0.30
47 32 0.30
48 1 0.01
49 4 0.04
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC
Found at i:81139030 original size:15 final size:15
Alignment explanation
Indices: 81139008--81139085 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
81138998 AAAAAACCGA
81139008 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
81139023 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
81139037 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
81139052 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
81139068 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
81139083 ATA
1 ATA
81139086 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:81139040 original size:30 final size:31
Alignment explanation
Indices: 81139006--81139085 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
81138996 ACAAAAAACC
* *
81139006 GAATAAAGAAATCCAAGATAGAGA-AACCCG
1 GAATAAAGAAATCCAAGATAAAGAGAACCAG
*
81139036 GAATAAAGAAATCC-AGAATAAAGAGATCCAG
1 GAATAAAGAAATCCAAG-ATAAAGAGAACCAG
*
81139067 G-ATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
81139086 CGATACTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 2 0.05
30 34 0.79
31 7 0.16
ACGTcount: A:0.55, C:0.15, G:0.19, T:0.11
Consensus pattern (31 bp):
GAATAAAGAAATCCAAGATAAAGAGAACCAG
Found at i:81142086 original size:46 final size:43
Alignment explanation
Indices: 81141972--81142145 Score: 158
Period size: 46 Copynumber: 3.9 Consensus size: 43
81141962 GTAACCCGCC
* * * *
81141972 CATAAGC-AACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATC
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CATA
*
81142016 CAT-AGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTTA
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A--TA
* * *
81142060 CATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
1 CA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CATA
*
81142106 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC
81142146 CAAATATCCC
Statistics
Matches: 108, Mismatches: 11, Indels: 23
0.76 0.08 0.16
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 23 0.21
44 14 0.13
45 9 0.08
46 53 0.49
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (43 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATA
Found at i:81142160 original size:46 final size:45
Alignment explanation
Indices: 81142019--81142160 Score: 119
Period size: 46 Copynumber: 3.1 Consensus size: 45
81142009 TCGCATCCAT
* * * *
81142019 AGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTTACATTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AATATCC
* * * *** *
81142065 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATATCC
81142110 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATAT-CC
81142156 AGTGA
1 AGTGA
81142161 CATGTCACTT
Statistics
Matches: 77, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
44 7 0.09
45 7 0.09
46 59 0.77
48 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCC
Found at i:81145712 original size:22 final size:23
Alignment explanation
Indices: 81145687--81145732 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
81145677 CAACCAAATC
81145687 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
81145709 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
81145732 A
1 A
81145733 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:81145738 original size:23 final size:23
Alignment explanation
Indices: 81145694--81145738 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
81145684 ATCAATTCAA
*
81145694 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
81145717 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
81145739 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Done.