Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 269 of 335
Found at i:81527967 original size:39 final size:40
Alignment explanation
Indices: 81527850--81528025 Score: 164
Period size: 39 Copynumber: 4.5 Consensus size: 40
81527840 GCTCGATTGT
* * * * *
81527850 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGC
* * *
81527890 CTTCGGGAATTAGCCCGGATTTAATAACTCGCAC-AATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* *
81527929 CTTCGGGACTTAACCC-GTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * * *
81527968 CTTC-GGA-TTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
*
81528007 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAACCCGGA
81528026 CACCATTCGA
Statistics
Matches: 111, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
37 6 0.05
38 25 0.23
39 41 0.37
40 29 0.26
41 10 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:81528009 original size:78 final size:78
Alignment explanation
Indices: 81527878--81528023 Score: 190
Period size: 78 Copynumber: 1.9 Consensus size: 78
81527868 TTATAGTGAT
* * *
81527878 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAAC
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAATAACTAGCACAAAGCCTTCGGGACTTAAC
81527943 CCGTTTTGGTAAC
66 CCGTTTTGGTAAC
* *
81527956 TCGCACAAATGCCTTC-GG-ATT-GACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTT
1 TCGCACAAATGCCTTCGGGAATTAG-CCCGGATTTAATAAC-TAGCAC-AAAGCCTTCGGGACTT
*
81528018 AGCCCG
63 AACCCG
81528024 GACACCATTC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
75 1 0.02
76 16 0.27
77 7 0.12
78 35 0.59
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAATAACTAGCACAAAGCCTTCGGGACTTAAC
CCGTTTTGGTAAC
Found at i:81535960 original size:40 final size:39
Alignment explanation
Indices: 81535902--81536094 Score: 140
Period size: 40 Copynumber: 4.8 Consensus size: 39
81535892 GGATATAGCG
* * * *
81535902 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
81535942 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
81535982 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
* * * *
81536022 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
81536062 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
81536095 ACACCATTCG
Statistics
Matches: 123, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
39 4 0.03
40 90 0.73
41 27 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:81536014 original size:80 final size:80
Alignment explanation
Indices: 81535902--81536094 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
81535892 GGATATAGCG
* * * * * * *
81535902 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
81535967 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
81535982 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
* *
81536047 GACCCGGATTTAGTC
66 GACCCGGATTTAATA
* * *
81536062 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
81536095 ACACCATTCG
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 67 0.71
81 27 0.29
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:81536083 original size:41 final size:39
Alignment explanation
Indices: 81535944--81536095 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
81535934 TTATAGTGAT
* *
81535944 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
81535984 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* *
81536024 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
81536064 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGA
81536096 CACCATTCGA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
40 67 0.71
41 27 0.29
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:81539562 original size:40 final size:39
Alignment explanation
Indices: 81539504--81539696 Score: 131
Period size: 40 Copynumber: 4.8 Consensus size: 39
81539494 GGATATAGCG
* * * *
81539504 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
81539544 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * * *
81539584 ACTCACACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
* * * *
81539624 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
81539664 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
81539697 ACACCATTCG
Statistics
Matches: 121, Mismatches: 24, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
39 4 0.03
40 88 0.73
41 27 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:81539616 original size:80 final size:81
Alignment explanation
Indices: 81539518--81539696 Score: 218
Period size: 80 Copynumber: 2.2 Consensus size: 81
81539508 GCTCGATTGT
* * * *
81539518 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAA
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAA
* *
81539582 TAACTCA-CACGAATGC
65 TAACTCAGCACAAAAGC
* * * * *
81539598 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAAT
* *
81539663 CACTTAGCACAAAAGC
66 AACTCAGCACAAAAGC
81539679 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
81539697 ACACCATTCG
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
80 58 0.70
81 25 0.30
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAAT
AACTCAGCACAAAAGC
Found at i:81539685 original size:41 final size:40
Alignment explanation
Indices: 81539548--81539697 Score: 142
Period size: 40 Copynumber: 3.7 Consensus size: 40
81539538 ATAGTGATTC
* * *
81539548 GCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAACTCA
1 GCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAACTTA
* * * * *
81539589 -CACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC-TC
1 GCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAACTTA
* *
81539628 GCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCACTTA
1 GCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAACTTA
* *
81539669 GCACAAAAGCCTTCGGGACTTAGCCCGGA
1 GCACAAATGCCTTCGGGAATTA-CCCGGA
81539698 CACCATTCGA
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
40 61 0.69
41 27 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGAATTACCCGGATTTAGTAACTTA
Found at i:81542463 original size:63 final size:63
Alignment explanation
Indices: 81542395--81542523 Score: 258
Period size: 63 Copynumber: 2.0 Consensus size: 63
81542385 AAAAATCATT
81542395 AAAAATCGAGTCAAAATCACTTACCAATTTAGATTTACAAGTGTCGAACCCTAAAACTCAATC
1 AAAAATCGAGTCAAAATCACTTACCAATTTAGATTTACAAGTGTCGAACCCTAAAACTCAATC
81542458 AAAAATCGAGTCAAAATCACTTACCAATTTAGATTTACAAGTGTCGAACCCTAAAACTCAATC
1 AAAAATCGAGTCAAAATCACTTACCAATTTAGATTTACAAGTGTCGAACCCTAAAACTCAATC
81542521 AAA
1 AAA
81542524 TGCTTTCTTC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.44, C:0.22, G:0.09, T:0.25
Consensus pattern (63 bp):
AAAAATCGAGTCAAAATCACTTACCAATTTAGATTTACAAGTGTCGAACCCTAAAACTCAATC
Found at i:81544451 original size:18 final size:18
Alignment explanation
Indices: 81544430--81544464 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81544420 TGGCTCAACT
*
81544430 AAATATTTAAAAAATATA
1 AAATATGTAAAAAATATA
*
81544448 AAATATGTGAAAAATAT
1 AAATATGTAAAAAATAT
81544465 TGTCCACGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
AAATATGTAAAAAATATA
Found at i:81548302 original size:13 final size:13
Alignment explanation
Indices: 81548284--81548312 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
81548274 GAGCTACCTT
81548284 ATATAATGTTTTA
1 ATATAATGTTTTA
81548297 ATATAATGTTTTA
1 ATATAATGTTTTA
81548310 ATA
1 ATA
81548313 GATAACATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (13 bp):
ATATAATGTTTTA
Found at i:81550359 original size:22 final size:22
Alignment explanation
Indices: 81550331--81550395 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
81550321 GCAAATACTT
*
81550331 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
81550353 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
81550375 TTGGCGCAAAGTCATAATCAG
1 TTGGCACAAAGCCATAATCAG
81550396 AATAATTGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:81550654 original size:41 final size:41
Alignment explanation
Indices: 81550541--81550659 Score: 166
Period size: 41 Copynumber: 2.9 Consensus size: 41
81550531 AGCCACCAGC
* * *
81550541 GGATCCACGGTCGTCAAGCAACCAAGCGATCCTTAATCGGT
1 GGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGAT
*
81550582 GGATCCACGGTCCTCAAGCAACCATGCGATCCTCAATCGAT
1 GGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGAT
** * *
81550623 GGATCCACGGTCGTCAAATAACCGTGTGATCCTCAAT
1 GGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
81550660 TTTTTCCTCT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (41 bp):
GGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGAT
Found at i:81550949 original size:27 final size:27
Alignment explanation
Indices: 81550917--81551281 Score: 247
Period size: 27 Copynumber: 13.5 Consensus size: 27
81550907 TTGGTAAATC
*
81550917 TACAAACCAAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * *
81550944 TGCAAACCAATGGTATTTCTG-TAATTT
1 TACAAATCAAGGGTATTTC-GATAATTT
** *
81550971 TTGAAAGTTAAGGGTATTTCTG-TAATTT
1 TACAAA-TCAAGGGTATTTC-GATAATTT
** * *
81550999 TGTAAATTAGGGGTATTTCTG-TAATTT
1 TACAAATCAAGGGTATTTC-GATAATTT
* *
81551026 TCCAAATTAAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * * *
81551053 TCCAAATCATGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
** * * *
81551080 TACAAATTGAGGGTATTTTGGTTATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * *
81551107 TACAAGTCGAGGATATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
** *
81551134 TACATGTCAAGGGTATTTCTATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * * * * *
81551161 CACAAATTAGGGGTATTTTGGT-GTTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * *
81551187 TACAAATCGAGGGTACTTCGATAATCT
1 TACAAATCAAGGGTATTTCGATAATTT
* *
81551214 TACAAGTCGAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* **
81551241 TATAGGT-AGAGGGTATTTC-AGTAATTT
1 TACAAATCA-AGGGTATTTCGA-TAATTT
*
81551268 CACAAATCAAGGGT
1 TACAAATCAAGGGT
81551282 GGTATTTTGG
Statistics
Matches: 271, Mismatches: 60, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
26 20 0.07
27 227 0.84
28 24 0.09
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCGATAATTT
Found at i:81551107 original size:81 final size:80
Alignment explanation
Indices: 81550981--81551242 Score: 280
Period size: 81 Copynumber: 3.2 Consensus size: 80
81550971 TTGAAAGTTA
* ** * * **
81550981 AGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTCT-GTAATTTTCCAAATTAAGGGTATTTC
1 AGGGTATTTCTATAATTTTACAAATTAGGGGTATTT-TGGTTATTTTACAAATCGAGGGTATTTC
* *
81551045 GATAATTTTCCAAATC
65 GATAATTTTACAAGTC
* * *
81551061 ATGGGTATTT-TGGTAATTTTACAAATT-GAGGGTATTTTGGTTATTTTACAAGTCGAGGATATT
1 A-GGGTATTTCT-ATAATTTTACAAATTAG-GGGTATTTTGGTTATTTTACAAATCGAGGGTATT
*
81551124 TCGATAATTTTACATGTC
63 TCGATAATTTTACAAGTC
* * *
81551142 AAGGGTATTTCTATAATTTCACAAATTAGGGGTATTTTGG-TGTTTTACAAATCGAGGGTACTTC
1 -AGGGTATTTCTATAATTTTACAAATTAGGGGTATTTTGGTTATTTTACAAATCGAGGGTATTTC
*
81551206 GATAATCTTACAAGTC
65 GATAATTTTACAAGTC
*
81551222 GAGGGTATTTCGATAATTTTA
1 -AGGGTATTTCTATAATTTTA
81551243 TAGGTAGAGG
Statistics
Matches: 153, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
80 56 0.37
81 94 0.61
82 3 0.02
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.42
Consensus pattern (80 bp):
AGGGTATTTCTATAATTTTACAAATTAGGGGTATTTTGGTTATTTTACAAATCGAGGGTATTTCG
ATAATTTTACAAGTC
Found at i:81551238 original size:107 final size:106
Alignment explanation
Indices: 81551033--81551303 Score: 330
Period size: 107 Copynumber: 2.5 Consensus size: 106
81551023 TTTTCCAAAT
* * * *
81551033 TAAGGGTATTTCGATAATTTTC-CAAATCATGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 TAAGGGTATTTC-ATAA-TTTCACAAATAAGGGGTATTTTGGTAATTTTACAAATCGAGGGTACT
* * * * *
81551097 TTGGTTATTTTACAAGTCGAGGATATTTCGATAATTTTACATG
64 TCGATAATCTTACAAGTCGAGGATATTTCGATAATTTTACAGG
* *
81551140 TCAAGGGTATTTCTATAATTTCACAAATTAGGGGTATTTTGGT-GTTTTACAAATCGAGGGTACT
1 T-AAGGGTATTTC-ATAATTTCACAAATAAGGGGTATTTTGGTAATTTTACAAATCGAGGGTACT
* *
81551204 TCGATAATCTTACAAGTCGAGGGTATTTCGATAATTTTATAGG
64 TCGATAATCTTACAAGTCGAGGATATTTCGATAATTTTACAGG
81551247 TAGAGGGTATTTCAGTAATTTCACAAATCAAGGGTGGTATTTTGGTAATTTTACAAA
1 TA-AGGGTATTTCA-TAATTTCACAAAT-AA-GG-GGTATTTTGGTAATTTTACAAA
81551304 CCAGAGGTAT
Statistics
Matches: 141, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
106 2 0.01
107 83 0.59
108 34 0.24
109 2 0.01
110 11 0.08
111 9 0.06
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (106 bp):
TAAGGGTATTTCATAATTTCACAAATAAGGGGTATTTTGGTAATTTTACAAATCGAGGGTACTTC
GATAATCTTACAAGTCGAGGATATTTCGATAATTTTACAGG
Found at i:81551345 original size:27 final size:26
Alignment explanation
Indices: 81551313--81551414 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 26
81551303 ACCAGAGGTA
81551313 TTCAGTAATTCTACCTTACAGGGGCAT
1 TTCAGTAATTCTACC-TACAGGGGCAT
*
81551340 TTCAGTAATTCTATCCTACAGGGGTAT
1 TTCAGTAATTCTA-CCTACAGGGGCAT
*
81551367 TTCAGTAATTCTACCCTACTA-GGGTAT
1 TTCAGTAATTCTA-CCTAC-AGGGGCAT
* *
81551394 TTTAGTAATACTAGCCTACAG
1 TTCAGTAATTCTA-CCTACAG
81551415 ATATGAGATT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 1 0.01
27 63 0.94
28 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (26 bp):
TTCAGTAATTCTACCTACAGGGGCAT
Found at i:81551378 original size:54 final size:53
Alignment explanation
Indices: 81551309--81551414 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 53
81551299 ACAAACCAGA
* * *
81551309 GGTATTCAGTAATTCTACCTTAC-AGGGGCATTTCAGTAATTCTATCCTACAGG
1 GGTATTCAGTAATTCTACCCTACTA-GGGCATTTCAGTAATACTAGCCTACAGG
* *
81551362 GGTATTTCAGTAATTCTACCCTACTAGGGTATTTTAGTAATACTAGCCTACAG
1 GGTA-TTCAGTAATTCTACCCTACTAGGGCATTTCAGTAATACTAGCCTACAG
81551415 ATATGAGATT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
53 4 0.09
54 41 0.89
55 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (53 bp):
GGTATTCAGTAATTCTACCCTACTAGGGCATTTCAGTAATACTAGCCTACAGG
Found at i:81553939 original size:21 final size:22
Alignment explanation
Indices: 81553910--81553957 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
81553900 GTAGACAGAT
*
81553910 CACCAGCCCAGT-CCAACCAACA
1 CACCAGCCC-GTACCAACAAACA
81553932 CACC-GCCCGTACCAACAAACA
1 CACCAGCCCGTACCAACAAACA
81553953 CACCA
1 CACCA
81553958 TGTGGGGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 2 0.09
21 17 0.74
22 4 0.17
ACGTcount: A:0.38, C:0.50, G:0.08, T:0.04
Consensus pattern (22 bp):
CACCAGCCCGTACCAACAAACA
Found at i:81554052 original size:22 final size:22
Alignment explanation
Indices: 81554023--81554092 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
81554013 ACACTAAGTC
*
81554023 AACAGGACAGCTCA-ACGCCGTA
1 AACAGGACAGCACATA-GCCGTA
* *
81554045 GACAGGACGGCACATAGCCGTA
1 AACAGGACAGCACATAGCCGTA
* *
81554067 AACAGGACAACACATAGCTGTA
1 AACAGGACAGCACATAGCCGTA
81554089 AACA
1 AACA
81554093 TTGCAGCAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 39 0.98
23 1 0.03
ACGTcount: A:0.40, C:0.27, G:0.23, T:0.10
Consensus pattern (22 bp):
AACAGGACAGCACATAGCCGTA
Found at i:81554320 original size:22 final size:22
Alignment explanation
Indices: 81554295--81554346 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
81554285 GCAAATACTT
81554295 TTGGCACACAACCATAAT-AAGG
1 TTGGCACACAACCAT-ATGAAGG
* * *
81554317 TTGGCACAGAGCCATATGTAGG
1 TTGGCACACAACCATATGAAGG
81554339 TTGGCACA
1 TTGGCACA
81554347 AAGTCATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 2 0.08
22 24 0.92
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (22 bp):
TTGGCACACAACCATATGAAGG
Found at i:81554561 original size:41 final size:41
Alignment explanation
Indices: 81554504--81554622 Score: 184
Period size: 41 Copynumber: 2.9 Consensus size: 41
81554494 AGCCACCAGC
* * * *
81554504 GGATCCACGGTCGTCAAGTAACCATGCAATCCTTAATCGGT
1 GGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCGGT
*
81554545 GGATCCACGATCGTCAAGCAACCATGTGATCCTCAATCGGT
1 GGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCGGT
*
81554586 GGATCCACGATCGTCAAACAACCATGCGATCCTCAAT
1 GGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
81554623 TTCTTCCTCT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (41 bp):
GGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCGGT
Found at i:81555034 original size:27 final size:27
Alignment explanation
Indices: 81554949--81555269 Score: 231
Period size: 27 Copynumber: 11.9 Consensus size: 27
81554939 GTTTATTTCT
** * **
81554949 ATAATTTTGTAAAACAGGGGTATTTCC
1 ATAATTTTACAAATCAGGGGTATTTTG
* * *
81554976 ATAATTTTTCAAATCAAGGGTATTTCG
1 ATAATTTTACAAATCAGGGGTATTTTG
*
81555003 ATAATTTTCCAAATCAGGGGTATTTTG
1 ATAATTTTACAAATCAGGGGTATTTTG
* * *
81555030 CTAATTTTACAAA-CCGAGGGTATTTCG
1 ATAATTTTACAAATCAG-GGGTATTTTG
* * * *
81555057 ATAATTTTCCAAGTCAAGGGTATTTCG
1 ATAATTTTACAAATCAGGGGTATTTTG
* ** *
81555084 ATAACTTTACAGGTC-GAGGGTATTTCG
1 ATAATTTTACAAATCAG-GGGTATTTTG
* *
81555111 GTAATTTCACAAATCAGGGGTATTTTG
1 ATAATTTTACAAATCAGGGGTATTTTG
* *
81555138 GTAATTTTACAAAT-TGAGGGTATTTTG
1 ATAATTTTACAAATCAG-GGGTATTTTG
* *
81555165 ATAATCTTACAAGTC-GAGGGTATTTTG
1 ATAATTTTACAAATCAG-GGGTATTTTG
* ** *
81555192 ATAATTTTATAGGT-TGAGGGTATTTT-
1 ATAATTTTACAAATCAG-GGGTATTTTG
* * *
81555218 AGTAATTTCATAAATTAGGGGTATTTTG
1 A-TAATTTTACAAATCAGGGGTATTTTG
* *
81555246 GTAATTTTACAAACCAGGGGTATT
1 ATAATTTTACAAATCAGGGGTATT
81555270 CAGTAATTCT
Statistics
Matches: 240, Mismatches: 44, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.02
27 233 0.97
28 3 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
ATAATTTTACAAATCAGGGGTATTTTG
Found at i:81555051 original size:81 final size:81
Alignment explanation
Indices: 81554949--81555200 Score: 274
Period size: 81 Copynumber: 3.1 Consensus size: 81
81554939 GTTTATTTCT
** * * * *
81554949 ATAATTTTGTAAAACAGGGGTATTTCCATAATTTTTCAAATCAAGGGTATTTCGATAATTTTCCA
1 ATAATTTTACAAACCAGGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACA
*
81555014 AATC-AGGGGTATTTTG
66 AGTCGA-GGGTATTTTG
* * * *
81555030 CTAATTTTACAAACC-GAGGGTATTTCGATAATTTTCCAAGTCAAGGGTATTTCGATAACTTTAC
1 ATAATTTTACAAACCAG-GGGTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTAC
* *
81555094 AGGTCGAGGGTATTTCG
65 AAGTCGAGGGTATTTTG
* * * * * ** * *
81555111 GTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATCTTACA
1 ATAATTTTACAAACCAGGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACA
81555176 AGTCGAGGGTATTTTG
66 AGTCGAGGGTATTTTG
81555192 ATAATTTTA
1 ATAATTTTA
81555201 TAGGTTGAGG
Statistics
Matches: 140, Mismatches: 28, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
80 1 0.01
81 137 0.98
82 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (81 bp):
ATAATTTTACAAACCAGGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACA
AGTCGAGGGTATTTTG
Found at i:81555078 original size:108 final size:108
Alignment explanation
Indices: 81554966--81555269 Score: 373
Period size: 108 Copynumber: 2.8 Consensus size: 108
81554956 TGTAAAACAG
* ** *
81554966 GGGTATTTCCATAATTTTTCAAATCAAGGGTATTTCGATAATTTTC-CAAATCAGGGGTATTTTG
1 GGGTATTTCGATAATTTTTCAGGTCGAGGGTATTTCGATAA-TTTCACAAATCAGGGGTATTTTG
* * *
81555030 CTAATTTTACAAACCGAGGGTATTTCGATAATTTTCCAAGTCAA
65 GTAATTTTACAAACCGAGGGTATTTCGATAATCTTACAAGTCAA
* * *
81555074 GGGTATTTCGATAACTTTACAGGTCGAGGGTATTTCGGTAATTTCACAAATCAGGGGTATTTTGG
1 GGGTATTTCGATAATTTTTCAGGTCGAGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
** * *
81555139 TAATTTTACAAATTGAGGGTATTTTGATAATCTTACAAGTCGA
66 TAATTTTACAAACCGAGGGTATTTCGATAATCTTACAAGTCAA
* * * * *
81555182 GGGTATTTTGATAATTTTAT-AGGTTGAGGGTATTT-TAGTAATTTCATAAATTAGGGGTATTTT
1 GGGTATTTCGATAATTTT-TCAGGTCGAGGGTATTTCGA-TAATTTCACAAATCAGGGGTATTTT
81555245 GGTAATTTTACAAACC-AGGGGTATT
64 GGTAATTTTACAAACCGA-GGGTATT
81555270 CAGTAATTCT
Statistics
Matches: 168, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
107 5 0.03
108 163 0.97
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (108 bp):
GGGTATTTCGATAATTTTTCAGGTCGAGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
TAATTTTACAAACCGAGGGTATTTCGATAATCTTACAAGTCAA
Found at i:81555209 original size:54 final size:54
Alignment explanation
Indices: 81554942--81555258 Score: 296
Period size: 54 Copynumber: 5.9 Consensus size: 54
81554932 AACTTAAGTT
* ** * ** * *
81554942 TATTTCTATAATTTTGTAAAACAGGGGTATTTCCATAATTTTTCAAATCAAGGG
1 TATTTCGATAATTTTACAAATCAGGGGTATTTTGATAATTTTACAAATCGAGGG
* * *
81554996 TATTTCGATAATTTTCCAAATCAGGGGTATTTTGCTAATTTTACAAACCGAGGG
1 TATTTCGATAATTTTACAAATCAGGGGTATTTTGATAATTTTACAAATCGAGGG
* * * * * **
81555050 TATTTCGATAATTTTCCAAGTCAAGGGTATTTCGATAACTTTACAGGTCGAGGG
1 TATTTCGATAATTTTACAAATCAGGGGTATTTTGATAATTTTACAAATCGAGGG
* * * *
81555104 TATTTCGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGG
1 TATTTCGATAATTTTACAAATCAGGGGTATTTTGATAATTTTACAAATCGAGGG
* * * * ** *
81555158 TATTTTGATAATCTTACAAGTC-GAGGGTATTTTGATAATTTTATAGGTTGAGGG
1 TATTTCGATAATTTTACAAATCAG-GGGTATTTTGATAATTTTACAAATCGAGGG
* * * * *
81555212 TATTT-TAGTAATTTCATAAATTAGGGGTATTTTGGTAATTTTACAAA
1 TATTTCGA-TAATTTTACAAATCAGGGGTATTTTGATAATTTTACAAA
81555259 CCAGGGGTAT
Statistics
Matches: 212, Mismatches: 48, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
53 2 0.01
54 209 0.99
55 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
TATTTCGATAATTTTACAAATCAGGGGTATTTTGATAATTTTACAAATCGAGGG
Found at i:81555303 original size:53 final size:55
Alignment explanation
Indices: 81555233--81555357 Score: 141
Period size: 54 Copynumber: 2.3 Consensus size: 55
81555223 TTTCATAAAT
** * * *
81555233 TAGGGGTATTTTGGTAATTTTA-CAAACCAGGGGTA-TTCAGTAATTCTACCTTA-
1 TAGGGGTATTTCAGTAATTCTATCAAA-CAGGGGCATTTCAGTAATTCTACCCTAC
** *
81555286 TAGGGGTATTTCAGTAATTCTATCCTATAGGGGCATTTCAGTAATTCTACCCTAC
1 TAGGGGTATTTCAGTAATTCTATCAAACAGGGGCATTTCAGTAATTCTACCCTAC
81555341 TA-GGGTATTTCAGTAAT
1 TAGGGGTATTTCAGTAAT
81555358 ACTAGCCTAC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
53 25 0.41
54 34 0.56
55 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (55 bp):
TAGGGGTATTTCAGTAATTCTATCAAACAGGGGCATTTCAGTAATTCTACCCTAC
Found at i:81555367 original size:27 final size:26
Alignment explanation
Indices: 81555261--81555366 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
81555251 TTTACAAACC
81555261 AGGGGTA-TTCAGTAATTCTACCTTAT
1 AGGGGTATTTCAGTAATTCTACC-TAT
81555287 AGGGGTATTTCAGTAATTCTATCCTAT
1 AGGGGTATTTCAGTAATTCTA-CCTAT
*
81555314 AGGGGCATTTCAGTAATTCTACCCTACT
1 AGGGGTATTTCAGTAATTCTA-CCTA-T
*
81555342 A-GGGTATTTCAGTAATACTAGCCTA
1 AGGGGTATTTCAGTAATTCTA-CCTA
81555367 CAGATATGAG
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
26 7 0.10
27 61 0.85
28 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (26 bp):
AGGGGTATTTCAGTAATTCTACCTAT
Found at i:81556168 original size:36 final size:36
Alignment explanation
Indices: 81556128--81556198 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
81556118 AAAACCAAAT
81556128 TTTTTGCTAAAACCCAGGTTTGAACCCAAGATTTCA
1 TTTTTGCTAAAACCCAGGTTTGAACCCAAGATTTCA
* * *
81556164 TTTTTGCTAAAGCCTAGGTTTGAAGCCAAGATTTC
1 TTTTTGCTAAAACCCAGGTTTGAACCCAAGATTTC
81556199 TCCAACACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (36 bp):
TTTTTGCTAAAACCCAGGTTTGAACCCAAGATTTCA
Found at i:81557718 original size:3 final size:3
Alignment explanation
Indices: 81557710--81557774 Score: 53
Period size: 3 Copynumber: 21.3 Consensus size: 3
81557700 CTAACCATAT
* *
81557710 ATA ATA ATA AAA ATA ATA ATA ATA GTA ATTA ATA GA-A ATA ATTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA -ATA ATA A-TA ATA
* *
81557757 A-A ACA ATA GTA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
81557775 ATACAATAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
2 3 0.06
3 40 0.80
4 7 0.14
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:81557770 original size:21 final size:21
Alignment explanation
Indices: 81557740--81557791 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
81557730 AATAGTAATT
* *
81557740 AATAGAAATAATTAATAAAAC
1 AATAGTAATAATAAATAAAAC
* *
81557761 AATAGTAATAATAAATACAAT
1 AATAGTAATAATAAATAAAAC
81557782 AAT-GTAATAA
1 AATAGTAATAA
81557792 ACATTGTGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (21 bp):
AATAGTAATAATAAATAAAAC
Found at i:81558089 original size:14 final size:14
Alignment explanation
Indices: 81558070--81558100 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81558060 ATATATTTAC
*
81558070 ATAATAAATATATA
1 ATAATAAATAAATA
81558084 ATAATAAATAAATA
1 ATAATAAATAAATA
81558098 ATA
1 ATA
81558101 TAGTAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:81558522 original size:18 final size:18
Alignment explanation
Indices: 81558499--81558534 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81558489 ATAACAAGTA
*
81558499 GGGTGATAGAGTTAGTGG
1 GGGTGATAGAGGTAGTGG
*
81558517 GGGTGATGGAGGTAGTGG
1 GGGTGATAGAGGTAGTGG
81558535 ATGGTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.56, T:0.25
Consensus pattern (18 bp):
GGGTGATAGAGGTAGTGG
Found at i:81558567 original size:37 final size:37
Alignment explanation
Indices: 81558516--81558587 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
81558506 AGAGTTAGTG
*
81558516 GGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGTGTA
1 GGGGTGATGAAGGTAGTGGATGGTTTAGTAGGGTGTA
81558553 GGGGTGATGAAGGTAGTGGATGGTTTAGTAGGGTG
1 GGGGTGATGAAGGTAGTGGATGGTTTAGTAGGGTG
81558588 ATGGAGTTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.19, C:0.00, G:0.51, T:0.29
Consensus pattern (37 bp):
GGGGTGATGAAGGTAGTGGATGGTTTAGTAGGGTGTA
Found at i:81558598 original size:29 final size:29
Alignment explanation
Indices: 81558554--81558616 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
81558544 TAGGGTGTAG
81558554 GGGTGATGAAGGTAGTGGAT-GGTTTAGTA
1 GGGTGATGAAGGTAGTGG-TCGGTTTAGTA
* * *
81558583 GGGTGATGGAGTTAGTGGTCGGTTTAGTG
1 GGGTGATGAAGGTAGTGGTCGGTTTAGTA
81558612 GGGTG
1 GGGTG
81558617 TTTAATTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.17, C:0.02, G:0.49, T:0.32
Consensus pattern (29 bp):
GGGTGATGAAGGTAGTGGTCGGTTTAGTA
Found at i:81559003 original size:43 final size:43
Alignment explanation
Indices: 81558953--81559179 Score: 133
Period size: 43 Copynumber: 5.2 Consensus size: 43
81558943 GCCTGTTAGC
81558953 CTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGCTCCA
1 CTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGCTCCA
* * * *** * ** * *
81558996 CCACTGC-TCGGCGAGCCCAGATC-TGTAAATTTTAGCCTGCTACC-
1 CTACTGCTTAGG-GGGTTAAG-GCGTGTATCTTTGA-TCTGCT-CCA
*
81559040 CTACTGCTTAAGGGGTTAAGGCGTGTATCTTTGATCTGCTCCA
1 CTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGCTCCA
* * * * * * *
81559083 CTACTGCTTAGGGAGATAAGATC-TATAATC-TTCAGCTTGTTACC-
1 CTACTGCTTAGGGGGTTAAG-GCGTGT-ATCTTTGATC-TGCT-CCA
* * *
81559127 CTATTGCTTAGGGAGTTAAAGCGTGTATCTTTGATCTGCTCCA
1 CTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGCTCCA
*
81559170 CTACCGCTTA
1 CTACTGCTTA
81559180 AGGAGACAAG
Statistics
Matches: 129, Mismatches: 41, Indels: 28
0.65 0.21 0.14
Matches are distributed among these distances:
42 7 0.05
43 62 0.48
44 54 0.42
45 6 0.05
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (43 bp):
CTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGCTCCA
Found at i:81559016 original size:87 final size:87
Alignment explanation
Indices: 81558843--81559170 Score: 423
Period size: 87 Copynumber: 3.8 Consensus size: 87
81558833 AACGAAGATA
* * * *
81558843 AGATCTG-CAATTTTAGCCTGTTACCCTATTGCTTAGGGGGTTAAGGCGAG--TCTTTGACCTGC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGC
**
81558905 TCTGCCACTGCTCGGCGAGCCC
66 TCCACCACTGCTCGGCGAGCCC
*
81558927 AGATCTGTAAATTTTAGCCTGTTAGCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGC
81558992 TCCACCACTGCTCGGCGAGCCC
66 TCCACCACTGCTCGGCGAGCCC
* *
81559014 AGATCTGTAAATTTTAGCCTGCTACCCTACTGCTTAAGGGGTTAAGGCGTGTATCTTTGATCTGC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGC
* * ***
81559079 TCCACTACTGCTTAGG-GAGATA
66 TCCACCACTGC-TCGGCGAGCCC
* * * * * *
81559101 AGATCTAT-AATCTTCAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCGTGTATCTTTGATCTG
1 AGATCTGTAAAT-TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTG
81559165 CTCCAC
65 CTCCAC
81559171 TACCGCTTAA
Statistics
Matches: 216, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
84 7 0.03
85 39 0.18
86 3 0.01
87 164 0.76
88 3 0.01
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (87 bp):
AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGC
TCCACCACTGCTCGGCGAGCCC
Found at i:81559171 original size:87 final size:87
Alignment explanation
Indices: 81558842--81559233 Score: 418
Period size: 87 Copynumber: 4.5 Consensus size: 87
81558832 CAACGAAGAT
* * * *
81558842 AAGATCTG-CAATTTTAGCCTGTTACCCTATTGCTTAGGGGGTTAAGGCGAG--TCTTTGACCTG
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTG
** * *
81558904 CTCTGCCACTGCTCGGCGAGCC
66 CTCCACCACTGCTAGGCGAGAC
* *
81558926 CAGATCTGTAAATTTTAGCCTGTTAGCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTG
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTG
* *
81558991 CTCCACCACTGCTCGGCGAGCC
66 CTCCACCACTGCTAGGCGAGAC
* * *
81559013 CAGATCTGTAAATTTTAGCCTGCTACCCTACTGCTTAAGGGGTTAAGGCGTGTATCTTTGATCTG
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTG
* *
81559078 CTCCACTACTGCTTAGG-GAGAT
66 CTCCACCACTGC-TAGGCGAGAC
* * * * * *
81559100 AAGATCTAT-AATCTTCAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCGTGTATCTTTGATCT
1 AAGATCTGTAAAT-TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCT
* * *
81559164 GCTCCACTACCGCTTAAG-GAGAC
65 GCTCCACCACTGC-TAGGCGAGAC
* ** * * * *
81559187 AAGATTTGTAGTTTTTAACCTGTTGCCCTATTGTTTAGGGGGTTAAG
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAG
81559234 ACTGGTGGTT
Statistics
Matches: 264, Mismatches: 38, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
84 7 0.03
85 39 0.15
86 3 0.01
87 211 0.80
88 4 0.02
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.33
Consensus pattern (87 bp):
AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTG
CTCCACCACTGCTAGGCGAGAC
Found at i:81559631 original size:45 final size:46
Alignment explanation
Indices: 81559295--81559903 Score: 194
Period size: 44 Copynumber: 13.6 Consensus size: 46
81559285 AAAATTCAAT
* * *
81559295 CTGCTTCACTCCTGCTCAATGAAGATAAGATCTGGTCTATTTAG-C
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGAC
* * * * * *
81559340 CTGCTCCACTCCTGTTCAATGAAGATAAGGT-T--AATGA-TTGGAAT
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTAT-ATTTAG-AC
* * * * *
81559384 CTGCTCCA-TCGCTGGT-ACGTGGAGATAAGAT-TCGTCAAAATTT-GAT
1 CTGCTCCACTC-CTGCTCA-GTGAAGATAAGATCTGGT--ATATTTAGAC
* *
81559430 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAG-A-GTTTAG-C
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGAC
* *** * *
81559473 CTGCTCCACTCCTGCTCAGTGAAGATAAG-GCTGGT-GCCTGAAAC
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGAC
* ** * * **** * *
81559517 CTGCTCTA-TTGTCGATACA-TGGAGATAAGATTCACCAAAATTT-GAT
1 CTGCTCCACTCCT-GCT-CAGTGAAGATAAGA-TCTGGTATATTTAGAC
* * *
81559563 CTGCTCCGCTCCTGCTCA-CGAAGATAAGACCTGGTATATTTAG-C
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGAC
* *
81559607 CTGCTCCACTCCTGCTCAGTGAAGATAA-AGCT-G-ATGA-TTAGAAT
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTAT-ATTTAG-AC
* * * * *** * *
81559651 CTTCTCCA-TCGCCGGT-ACGTGGAGATAAGATTCTCCAAAATTT-GAT
1 CTGCTCCACTC-CTGCTCA-GTGAAGATAAGA-TCTGGTATATTTAGAC
* * *
81559697 CTGCTTCACTCCTACTCAATGAAGATAAGATCTGGTATATTTAG-C
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGAC
* * * *
81559742 CTGCTCCACTCCCGCTCAGTGAAGATAAGGT-T-G-ATGA-TTGGAAT
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTAT-ATTTAG-AC
* * * * * * * *
81559786 CTGCTCCA-TCGCCGGT-ACGTGAAGATAATATTCT-CTAAAATTCGAT
1 CTGCTCCACTC-CTGCTCA-GTGAAGATAAGA-TCTGGTATATTTAGAC
* *
81559832 CTGCTTCACTCCTGCTCAGTAAAGATAAGATCTGG--TATTTAG-C
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGAC
* *
81559875 CTGCTCCACTCCTACTTAGTGAAGATAAG
1 CTGCTCCACTCCTGCTCAGTGAAGATAAG
81559904 GCTGATGATT
Statistics
Matches: 410, Mismatches: 104, Indels: 102
0.67 0.17 0.17
Matches are distributed among these distances:
42 18 0.04
43 75 0.18
44 117 0.29
45 89 0.22
46 83 0.20
47 22 0.05
48 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (46 bp):
CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGAC
Found at i:81559777 original size:135 final size:135
Alignment explanation
Indices: 81559245--81559998 Score: 989
Period size: 133 Copynumber: 5.6 Consensus size: 135
81559235 CTGGTGGTTT
* * * ** *
81559245 GAATTTGCTCCATTGCCGATACATGGAGATAAGATTCTCCAAAATTCAATCTGCTTCACTCCTGC
1 GAATCTGCTCCATCGCCGATACGTGGAGATAAGATTCTCCAAAATTTGATCTGCTCCACTCCTGC
* * * * *
81559310 TCAATGAAGATAAGATCTGGTCTATTTAGCCTGCTCCACTCCTGTTCAATGAAGATAAGGTTAAT
66 TCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGAT
81559375 GATTG
131 GATTG
* *
81559380 GAATCTGCTCCATCGCTGGTACGTGGAGATAAGATTCGT-CAAAATTTGATCTGCTCCACTCCTG
1 GAATCTGCTCCATCGCCGATACGTGGAGATAAGATTC-TCCAAAATTTGATCTGCTCCACTCCTG
* * * *
81559444 CTCAGTGAAGATAAGATCTAG-A-GTTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGG
65 CTCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGA
**
81559507 TGCCTG
130 TGATTG
* * * * * * * *
81559513 AAACCTGCTCTATTGTCGATACATGGAGATAAGATTCACCAAAATTTGATCTGCTCCGCTCCTGC
1 GAATCTGCTCCATCGCCGATACGTGGAGATAAGATTCTCCAAAATTTGATCTGCTCCACTCCTGC
* * *
81559578 TC-ACGAAGATAAGACCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAAGCTGAT
66 TCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGAT
*
81559642 GATTA
131 GATTG
* * * *
81559647 GAATCTTCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATTTGATCTGCTTCACTCCTAC
1 GAATCTGCTCCATCGCCGATACGTGGAGATAAGATTCTCCAAAATTTGATCTGCTCCACTCCTGC
* *
81559712 TCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCCGCTCAGTGAAGATAAGGTTGAT
66 TCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGAT
81559777 GATTG
131 GATTG
* * * * * *
81559782 GAATCTGCTCCATCGCCGGTACGTGAAGATAATATTCTCTAAAATTCGATCTGCTTCACTCCTGC
1 GAATCTGCTCCATCGCCGATACGTGGAGATAAGATTCTCCAAAATTTGATCTGCTCCACTCCTGC
* * * *
81559847 TCAGTAAAGATAAGATCTGG--TATTTAGCCTGCTCCACTCCTACTTAGTGAAGATAAGGCTGAT
66 TCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGAT
81559910 GATTG
131 GATTG
* * *
81559915 GAATCTACTCCATCGCCGATACGTGGAGATAAGATTCGCCAAAATTTGATCTGCTCCGCTCCTGC
1 GAATCTGCTCCATCGCCGATACGTGGAGATAAGATTCTCCAAAATTTGATCTGCTCCACTCCTGC
**
81559980 TCAGCGAAGATAAGATCTG
66 TCAATGAAGATAAGATCTG
81559999 TCGAAATTTG
Statistics
Matches: 534, Mismatches: 80, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
132 13 0.02
133 213 0.40
134 96 0.18
135 211 0.40
136 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (135 bp):
GAATCTGCTCCATCGCCGATACGTGGAGATAAGATTCTCCAAAATTTGATCTGCTCCACTCCTGC
TCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGAT
GATTG
Found at i:81563131 original size:40 final size:40
Alignment explanation
Indices: 81562982--81563167 Score: 177
Period size: 40 Copynumber: 4.7 Consensus size: 40
81562972 TCGAATGATG
* * * **
81562982 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTGTA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
81563022 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81563062 TTC-GGACTAAGAT-CCGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81563102 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
81563143 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGATAAGTCCCGAAGGCATTTG
81563168 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
39 3 0.02
40 111 0.87
41 13 0.10
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81563159 original size:80 final size:81
Alignment explanation
Indices: 81562982--81563167 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 81
81562972 TCGAATGATG
* **
81562982 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTGTATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGTATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
*
81563046 TGTGCGAGTTACTAAA
66 TGTGCGAGCTACTAAA
* * * *
81563062 TTCGGACTAAGAT-CCGAAGGTATTTGTGC-GAGTTACTAAATCCGGGA-TAAG-TCCCGAAGGC
1 TCCGGGCTAAG-TCCCGAAGGTATTTGTGCTAAGTGACTAAATCC-GGACTAAGAT-CCGAAGGC
81563123 ATTTGTGCGAGCTACTATAA
63 ATTTGTGCGAGCTACTA-AA
*
81563143 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGTATTTG
81563168 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
79 2 0.02
80 74 0.83
81 13 0.15
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGTATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGCTACTAAA
Found at i:81564682 original size:24 final size:24
Alignment explanation
Indices: 81564655--81564726 Score: 60
Period size: 24 Copynumber: 3.1 Consensus size: 24
81564645 TTCCCTTGGC
81564655 CTCTCCTTTGCTTTTCTTTTCTTT
1 CTCTCCTTTGCTTTTCTTTTCTTT
** * *
81564679 CTCTTTTTTGTTTTTCTCTTCTTT
1 CTCTCCTTTGCTTTTCTTTTCTTT
* *
81564703 -T-TCCTTTTCCTTTT-TTCTCTTT
1 CTCTCC-TTTGCTTTTCTTTTCTTT
81564725 CT
1 CT
81564727 TTTTTCTCTT
Statistics
Matches: 36, Mismatches: 10, Indels: 5
0.71 0.20 0.10
Matches are distributed among these distances:
22 7 0.19
23 9 0.25
24 20 0.56
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (24 bp):
CTCTCCTTTGCTTTTCTTTTCTTT
Found at i:81564717 original size:13 final size:13
Alignment explanation
Indices: 81564699--81564776 Score: 75
Period size: 14 Copynumber: 5.5 Consensus size: 13
81564689 TTTTTCTCTT
81564699 CTTTTTCCTTTTC
1 CTTTTTCCTTTTC
*
81564712 CTTTTTTCTCTTTC
1 CTTTTTCCT-TTTC
*
81564726 TTTTTTCTCTTTCTC
1 CTTTTTC-CTTT-TC
81564741 TTCTTTTTCCTTTTC
1 --CTTTTTCCTTTTC
*
81564756 CTTTTTTCTCTTTC
1 CTTTTTCCT-TTTC
81564770 CTTTTTC
1 CTTTTTC
81564777 TCTTCTTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
13 16 0.30
14 21 0.40
15 6 0.11
16 4 0.08
17 6 0.11
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (13 bp):
CTTTTTCCTTTTC
Found at i:81564730 original size:44 final size:44
Alignment explanation
Indices: 81564671--81564780 Score: 177
Period size: 44 Copynumber: 2.5 Consensus size: 44
81564661 TTTGCTTTTC
* *
81564671 TTTTCT-TTCTCTTTTTTGTTTTTCTCTTCTTTTTCCTTTTCCTT
1 TTTTCTCTT-TCTTTTTTCTCTTTCTCTTCTTTTTCCTTTTCCTT
81564715 TTTTCTCTTTCTTTTTTCTCTTTCTCTTCTTTTTCCTTTTCCTT
1 TTTTCTCTTTCTTTTTTCTCTTTCTCTTCTTTTTCCTTTTCCTT
*
81564759 TTTTCTCTTTCCTTTTTCTCTT
1 TTTTCTCTTTCTTTTTTCTCTT
81564781 CTTTTTTTTT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
44 60 0.97
45 2 0.03
ACGTcount: A:0.00, C:0.25, G:0.01, T:0.74
Consensus pattern (44 bp):
TTTTCTCTTTCTTTTTTCTCTTTCTCTTCTTTTTCCTTTTCCTT
Found at i:81564787 original size:13 final size:13
Alignment explanation
Indices: 81564668--81564788 Score: 75
Period size: 13 Copynumber: 8.8 Consensus size: 13
81564658 TCCTTTGCTT
81564668 TTCTTTTCTTTCTC
1 TTCTTTT-TTTCTC
*
81564682 TTTTTTGTTTTTCTC
1 -TTCTT-TTTTTCTC
* *
81564697 TTC-TTTTTCCTT
1 TTCTTTTTTTCTC
*
81564709 TTCCTTTTTTCTC
1 TTCTTTTTTTCTC
*
81564722 TTTCTTTTTTCTCTT
1 -TTCTTTTTT-TCTC
*
81564737 TCTCTTCTTTTTCCTT
1 T-TCTT-TTTTT-CTC
*
81564753 TTCCTTTTTTCTC
1 TTCTTTTTTTCTC
*
81564766 TT-TCCTTTTTCTC
1 TTCT-TTTTTTCTC
81564779 TTCTTTTTTT
1 TTCTTTTTTT
81564789 TTTGAAAGTG
Statistics
Matches: 84, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
12 9 0.11
13 27 0.32
14 17 0.20
15 21 0.25
16 10 0.12
ACGTcount: A:0.00, C:0.25, G:0.01, T:0.74
Consensus pattern (13 bp):
TTCTTTTTTTCTC
Found at i:81571164 original size:13 final size:14
Alignment explanation
Indices: 81571143--81571193 Score: 54
Period size: 13 Copynumber: 3.9 Consensus size: 14
81571133 CTAACCATAT
*
81571143 ATAAATAATAAATA
1 ATAATTAATAAATA
81571157 ATAA-TAAT-AATA
1 ATAATTAATAAATA
* *
81571169 GTAATTAATAGA-A
1 ATAATTAATAAATA
81571182 ATAATTAATAAA
1 ATAATTAATAAA
81571194 ACAACAGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 7 0.23
13 19 0.61
14 5 0.16
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (14 bp):
ATAATTAATAAATA
Found at i:81571523 original size:14 final size:14
Alignment explanation
Indices: 81571496--81571534 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
81571486 AAAAATATAT
81571496 ATATATACATAATAA
1 ATATATA-ATAATAA
81571511 ATATATAATAATAA
1 ATATATAATAATAA
*
81571525 ATAAATAATA
1 ATATATAATA
81571535 TAATAATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
ATATATAATAATAA
Found at i:81571537 original size:19 final size:19
Alignment explanation
Indices: 81571488--81571543 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
81571478 CTTCGCTTAA
81571488 AAATATATATATATACAT-AAT
1 AAATA-ATATA-ATA-ATAAAT
81571509 AAAT-ATATAATAATAAAT
1 AAATAATATAATAATAAAT
81571527 AAATAATATAATAATAA
1 AAATAATATAATAATAA
81571544 GAAACATAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.06
18 10 0.30
19 17 0.52
21 4 0.12
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATAATATAATAATAAAT
Found at i:81571616 original size:15 final size:15
Alignment explanation
Indices: 81571580--81571617 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
81571570 AATAGAAAAT
81571580 AATAAAAAAACAAAC
1 AATAAAAAAACAAAC
* *
81571595 AGTAAAATAACAAA-
1 AATAAAAAAACAAAC
81571609 AATAAAAAA
1 AATAAAAAA
81571618 GGGGTTAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.79, C:0.08, G:0.03, T:0.11
Consensus pattern (15 bp):
AATAAAAAAACAAAC
Found at i:81571691 original size:22 final size:21
Alignment explanation
Indices: 81571666--81571722 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
81571656 AATCAGAAAG
81571666 GAAATAAAATGTGAACGCCAAA
1 GAAA-AAAATGTGAACGCCAAA
81571688 G-AAAAAATGTGAACGCCAAA
1 GAAAAAAATGTGAACGCCAAA
81571708 GTAAACAAAAT-TGAA
1 G-AAA-AAAATGTGAA
81571723 TAATATAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 18 0.56
21 2 0.06
22 7 0.22
23 5 0.16
ACGTcount: A:0.56, C:0.12, G:0.18, T:0.14
Consensus pattern (21 bp):
GAAAAAAATGTGAACGCCAAA
Found at i:81571696 original size:20 final size:20
Alignment explanation
Indices: 81571671--81571708 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
81571661 GAAAGGAAAT
81571671 AAAATGTGAACGCCAAAGAA
1 AAAATGTGAACGCCAAAGAA
81571691 AAAATGTGAACGCCAAAG
1 AAAATGTGAACGCCAAAG
81571709 TAAACAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.16, G:0.21, T:0.11
Consensus pattern (20 bp):
AAAATGTGAACGCCAAAGAA
Found at i:81571927 original size:37 final size:36
Alignment explanation
Indices: 81571873--81571946 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 36
81571863 GATAGAGTTA
81571873 GTGGGGGTGATGAAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGAAGGTAGTGGATGGTTT-GTAGGGT
*
81571910 GTGGGGGTGATGGAGGTAGTGGATGGTTTGTAGGGT
1 GTGGGGGTGATGAAGGTAGTGGATGGTTTGTAGGGT
81571946 G
1 G
81571947 ATGGAGTTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 8 0.22
37 28 0.78
ACGTcount: A:0.16, C:0.00, G:0.54, T:0.30
Consensus pattern (36 bp):
GTGGGGGTGATGAAGGTAGTGGATGGTTTGTAGGGT
Found at i:81571965 original size:28 final size:29
Alignment explanation
Indices: 81571914--81571975 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
81571904 TAGGGTGTGG
81571914 GGGTGATGGAGGTAGTGGATGGTTT-GTA
1 GGGTGATGGAGGTAGTGGATGGTTTAGTA
* *
81571942 GGGTGATGGAGTTAGTGG-TCGGTTTAGTG
1 GGGTGATGGAGGTAGTGGAT-GGTTTAGTA
81571971 GGGTG
1 GGGTG
81571976 CTTAATTTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 1 0.03
28 22 0.73
29 7 0.23
ACGTcount: A:0.15, C:0.02, G:0.52, T:0.32
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGATGGTTTAGTA
Found at i:81574016 original size:40 final size:40
Alignment explanation
Indices: 81573751--81573988 Score: 390
Period size: 40 Copynumber: 6.0 Consensus size: 40
81573741 TCGAATGATG
* * * *
81573751 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
81573791 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
81573831 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
81573871 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
81573911 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
81573951 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
81573989 TAACCGGGCT
Statistics
Matches: 189, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
40 181 0.96
41 8 0.04
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81574016 original size:120 final size:120
Alignment explanation
Indices: 81573751--81574016 Score: 403
Period size: 120 Copynumber: 2.2 Consensus size: 120
81573741 TCGAATGATG
* *
81573751 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
81573816 GTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAA
* * *
81573871 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGG-ATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
*
81573934 TTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTATAA
64 TTGTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGCTACTA-AA
*
81573992 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGG-ATTTG
81574017 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
119 1 0.01
120 121 0.92
121 10 0.08
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAA
Found at i:81575745 original size:26 final size:26
Alignment explanation
Indices: 81575715--81575765 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
81575705 AACTATCCTG
81575715 GGCCTTAGTTGTAACACCCTAAACCT
1 GGCCTTAGTTGTAACACCCTAAACCT
*
81575741 GGCCTTAGTTGTAACATCCTAAACC
1 GGCCTTAGTTGTAACACCCTAAACC
81575766 CGGCTAGACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GGCCTTAGTTGTAACACCCTAAACCT
Found at i:81577539 original size:16 final size:16
Alignment explanation
Indices: 81577518--81577551 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81577508 ACTTGATTTA
81577518 TTATTAATATATTTTT
1 TTATTAATATATTTTT
* *
81577534 TTATTATTTTATTTTT
1 TTATTAATATATTTTT
81577550 TT
1 TT
81577552 CCGACAAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTAATATATTTTT
Found at i:81585141 original size:16 final size:14
Alignment explanation
Indices: 81585112--81585145 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
81585102 TAAGTTTAAA
81585112 ATAATATTAAATTT
1 ATAATATTAAATTT
81585126 ATAATATATAACATTT
1 ATAATAT-TAA-ATTT
81585142 ATAA
1 ATAA
81585146 AAACTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 3 0.17
16 8 0.44
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAATATTAAATTT
Found at i:81586314 original size:20 final size:21
Alignment explanation
Indices: 81586278--81586321 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
81586268 TTTTCGTTAT
*
81586278 CTAATAAAAATCTAAAATT-C
1 CTAATAAAAATCCAAAATTGC
81586298 CTAATAATAAA-CCAAAATTGC
1 CTAATAA-AAATCCAAAATTGC
81586319 CTA
1 CTA
81586322 TATGATTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.52, C:0.18, G:0.02, T:0.27
Consensus pattern (21 bp):
CTAATAAAAATCCAAAATTGC
Found at i:81587008 original size:38 final size:38
Alignment explanation
Indices: 81586966--81587039 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
81586956 GATTACAAAC
*
81586966 TTTATCTGTTTTTTACATGTTTATCCCACAAATTTTCT
1 TTTATCTGTTTTTCACATGTTTATCCCACAAATTTTCT
*
81587004 TTTATCTGTTTTTCACATGTTTATCTCACAAATTTT
1 TTTATCTGTTTTTCACATGTTTATCCCACAAATTTT
81587040 GGTTTATCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.22, C:0.18, G:0.05, T:0.55
Consensus pattern (38 bp):
TTTATCTGTTTTTCACATGTTTATCCCACAAATTTTCT
Found at i:81587141 original size:3 final size:3
Alignment explanation
Indices: 81587133--81587185 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
81587123 GAGGATAAAT
81587133 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
81587181 TTA TT
1 TTA TT
81587186 TGATTCATTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:81596336 original size:29 final size:29
Alignment explanation
Indices: 81596303--81596380 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
81596293 GTGACGAGAT
* *
81596303 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
*
81596332 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
* **
81596361 CGGCACTGGGTGTGCGAGCT
1 TGGCACTAAGTGTGCGAGCT
81596381 CGGAGGGTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:81604024 original size:29 final size:29
Alignment explanation
Indices: 81603990--81604067 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
81603980 GTGACGAGAT
* *
81603990 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
81604019 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
81604048 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
81604068 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:81611593 original size:13 final size:13
Alignment explanation
Indices: 81611575--81611600 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81611565 ATATTATAAT
81611575 TATTTTATGTTAA
1 TATTTTATGTTAA
81611588 TATTTTATGTTAA
1 TATTTTATGTTAA
81611601 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:81613028 original size:40 final size:40
Alignment explanation
Indices: 81612980--81613217 Score: 370
Period size: 40 Copynumber: 6.2 Consensus size: 40
81612970 GGACTAAGAT
81612980 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
81613020 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
81613059 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
81613099 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
81613139 CCGAAGGCATTTGTGCTAGT-A--ATATCC-GGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
81613174 CC-AAGGCATTTGTGCGAGTTG-CTATATCC-GG-TAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
81613211 CCGAAGG
1 CCGAAGG
81613218 TACTTGGGTT
Statistics
Matches: 187, Mismatches: 4, Indels: 16
0.90 0.02 0.08
Matches are distributed among these distances:
34 15 0.08
35 3 0.02
36 12 0.06
37 16 0.09
38 4 0.02
39 39 0.21
40 98 0.52
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:81613110 original size:79 final size:79
Alignment explanation
Indices: 81612968--81613204 Score: 378
Period size: 79 Copynumber: 3.1 Consensus size: 79
81612958 CGGATGATAA
*
81612968 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
81613033 TGCTAGTTACTATAT
65 TGCTAGTTACTATAT
81613048 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
81613113 GCTAGTGACTATAT
66 GCTAGTTACTATAT
81613127 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-A--ATATCC-GGCTAAGT-CC-AAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
81613186 TGCGAGTTGCTATAT
65 TGCTAGTTACTATAT
81613201 CCGG
1 CCGG
81613205 TAAATCCCGA
Statistics
Matches: 151, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
74 26 0.17
75 2 0.01
76 8 0.05
77 6 0.04
79 80 0.53
80 29 0.19
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCTAGTTACTATAT
Found at i:81619735 original size:13 final size:13
Alignment explanation
Indices: 81619717--81619742 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81619707 ATATTATAAT
81619717 TATTTTATGTTAA
1 TATTTTATGTTAA
81619730 TATTTTATGTTAA
1 TATTTTATGTTAA
81619743 AAATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:81621169 original size:40 final size:40
Alignment explanation
Indices: 81621121--81621362 Score: 397
Period size: 40 Copynumber: 6.2 Consensus size: 40
81621111 GGACTAAGAT
81621121 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
81621161 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
81621200 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
81621240 CCGAAGGCATTTGTGCTAGTGACTATA-CCGGGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
81621278 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
81621318 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GG-TAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
81621356 CCGAAGG
1 CCGAAGG
81621363 TACTTGGGTT
Statistics
Matches: 192, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
38 38 0.20
39 62 0.32
40 90 0.47
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:81621251 original size:79 final size:79
Alignment explanation
Indices: 81621109--81621349 Score: 421
Period size: 78 Copynumber: 3.1 Consensus size: 79
81621099 CGGATGATAA
*
81621109 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
81621174 TGCTAGTTACTATAT
65 TGCTAGTTACTATAT
81621189 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
81621254 GCTAGTGACTATA-
66 GCTAGTTACTATAT
*
81621267 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* *
81621332 GCGAGTTGCTATAT
66 GCTAGTTACTATAT
81621346 CCGG
1 CCGG
81621350 TAAATCCCGA
Statistics
Matches: 154, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
78 74 0.48
79 71 0.46
80 9 0.06
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCTAGTTACTATAT
Found at i:81621318 original size:78 final size:78
Alignment explanation
Indices: 81621108--81621333 Score: 407
Period size: 79 Copynumber: 2.9 Consensus size: 78
81621098 TCGGATGATA
*
81621108 ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
81621173 GTGCTAGTTACTAT
65 GTGCTAGTGACTAT
81621187 ATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 A-CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
81621252 GTGCTAGTGACTAT
65 GTGCTAGTGACTAT
*
81621266 ACCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 ACCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
81621331 TGC
66 TGC
81621334 GAGTTGCTAT
Statistics
Matches: 143, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
78 66 0.46
79 68 0.48
80 9 0.06
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (78 bp):
ACCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCTAGTGACTAT
Found at i:81625828 original size:27 final size:28
Alignment explanation
Indices: 81625798--81625867 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
81625788 ATAGTGAGTC
*
81625798 CGCACACTTAGTGCTATA-AAATCAACT
1 CGCACACTTAGTGCTATATAAATAAACT
** *
81625825 CGCACACCCAGTGCTATATAATTAAACT
1 CGCACACTTAGTGCTATATAAATAAACT
81625853 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81625868 GTACAAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 16 0.44
28 20 0.56
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAAATAAACT
Found at i:81625858 original size:28 final size:27
Alignment explanation
Indices: 81625798--81625859 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
81625788 ATAGTGAGTC
** *
81625798 CGCACACTTAGTGCTATAAAATCAACT
1 CGCACACCCAGTGCTATAAAATAAACT
*
81625825 CGCACACCCAGTGCTATATAATTAAACT
1 CGCACACCCAGTGCTATA-AAATAAACT
81625853 CGCACAC
1 CGCACAC
81625860 TTAGTGCTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 16 0.53
28 14 0.47
ACGTcount: A:0.35, C:0.31, G:0.11, T:0.23
Consensus pattern (27 bp):
CGCACACCCAGTGCTATAAAATAAACT
Found at i:81632191 original size:21 final size:21
Alignment explanation
Indices: 81632167--81632219 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
81632157 GACACATAAA
*
81632167 GTGCCTAAAATGACACACGAG
1 GTGCCTGAAATGACACACGAG
* *
81632188 GTGCCTGATACGACACACGAG
1 GTGCCTGAAATGACACACGAG
81632209 GTGCCTGAAAT
1 GTGCCTGAAAT
81632220 ACGACGCATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.26, T:0.17
Consensus pattern (21 bp):
GTGCCTGAAATGACACACGAG
Found at i:81632638 original size:15 final size:15
Alignment explanation
Indices: 81632612--81632668 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
81632602 CATATATATT
81632612 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
81632626 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
81632641 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
81632656 ATATAAATTCAAT
1 ATATAATTTCAAT
81632669 AAATTCATTG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:81633009 original size:5 final size:5
Alignment explanation
Indices: 81632996--81633027 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
81632986 TTCTTTAGTT
81632996 TATATA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA T
81633028 TAAAACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:81633063 original size:8 final size:8
Alignment explanation
Indices: 81633050--81633078 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
81633040 TATCTTTATT
81633050 ATATAATA
1 ATATAATA
81633058 ATATAATA
1 ATATAATA
81633066 ATATAATA
1 ATATAATA
81633074 ATATA
1 ATATA
81633079 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:81635104 original size:40 final size:40
Alignment explanation
Indices: 81635047--81635122 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
81635037 TGGTACTCTA
*
81635047 TGGTGTGTAGGGTTGGATGGGTTA-ATTTTATCCCCATATT
1 TGGTGTGTAGGGATGGATGGG-TAGATTTTATCCCCATATT
81635087 TGGTGTGTAGGGATGGATGGGTAGATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGGGTAGATTTTATCCCCA
81635123 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
39 2 0.06
40 32 0.94
ACGTcount: A:0.18, C:0.11, G:0.33, T:0.38
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATGGGTAGATTTTATCCCCATATT
Found at i:81636033 original size:34 final size:34
Alignment explanation
Indices: 81635990--81636057 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
81635980 CTGTAAGTTT
*
81635990 CTGAAACTCTGTTTAGAATTGTTTTAAAGCATGC
1 CTGAAACTCTGTTTAGAATTGTTTTAAAACATGC
81636024 CTGAAACTCTGTTTAGAATTGTTTTAAAACATGC
1 CTGAAACTCTGTTTAGAATTGTTTTAAAACATGC
81636058 TTAGAATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (34 bp):
CTGAAACTCTGTTTAGAATTGTTTTAAAACATGC
Found at i:81646382 original size:2 final size:2
Alignment explanation
Indices: 81646375--81646418 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
81646365 ATGGTGAAAG
81646375 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81646417 TA
1 TA
81646419 AAGTCATATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81648042 original size:43 final size:43
Alignment explanation
Indices: 81647976--81648061 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
81647966 AAATCATACA
*
81647976 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAGCCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTAC-TCGTAGACACATATCG
81648019 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCGTAGACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACTCGTAGACACATATCG
81648062 GAATCAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 3 0.08
43 35 0.90
44 1 0.03
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACTCGTAGACACATATCG
Found at i:81650991 original size:21 final size:21
Alignment explanation
Indices: 81650942--81650992 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
81650932 TCCAACACTC
* *
81650942 ATAATTTATCTAACCCAATAT
1 ATAATTTATATAACCCAAAAT
* * *
81650963 TTATTTTATATTACCCAAAAT
1 ATAATTTATATAACCCAAAAT
81650984 ATAATTTAT
1 ATAATTTAT
81650993 TTAATCAATT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (21 bp):
ATAATTTATATAACCCAAAAT
Found at i:81651179 original size:26 final size:26
Alignment explanation
Indices: 81651120--81651179 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
81651110 TTTAATTTCC
*
81651120 TTATTTAGCATATCCAAAATGACTAA
1 TTATTTATCATATCCAAAATGACTAA
81651146 TTATTTATCATATCCAAAATGACTAA
1 TTATTTATCATATCCAAAATGACTAA
81651172 TTATTTAT
1 TTATTTAT
81651180 TTCCACATTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.40, C:0.13, G:0.05, T:0.42
Consensus pattern (26 bp):
TTATTTATCATATCCAAAATGACTAA
Found at i:81653178 original size:54 final size:54
Alignment explanation
Indices: 81653090--81653199 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
81653080 CAAAAAGTTT
*
81653090 AACAATTTTGCAAATTGGTACATGGGCTAACTTAATCAAGCTCTCATGACCTCA
1 AACAATTTTGCAAATTGGTACATGAGCTAACTTAATCAAGCTCTCATGACCTCA
* *
81653144 AACAATTTTTCAAATTGGTACATGAGCTAGCTTAATCAAGCTCTCATGACCTCA
1 AACAATTTTGCAAATTGGTACATGAGCTAACTTAATCAAGCTCTCATGACCTCA
81653198 AA
1 AA
81653200 AACATAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (54 bp):
AACAATTTTGCAAATTGGTACATGAGCTAACTTAATCAAGCTCTCATGACCTCA
Found at i:81653380 original size:10 final size:10
Alignment explanation
Indices: 81653365--81653405 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
81653355 ACTTGGATTG
81653365 AACCTTAATT
1 AACCTTAATT
81653375 AACCTTAATT
1 AACCTTAATT
81653385 AA--TTAATT
1 AACCTTAATT
*
81653393 AAACCTTATTT
1 -AACCTTAATT
81653404 AA
1 AA
81653406 TTAAAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 6 0.22
9 2 0.07
10 14 0.52
11 5 0.19
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (10 bp):
AACCTTAATT
Found at i:81653399 original size:19 final size:18
Alignment explanation
Indices: 81653369--81653409 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
81653359 GGATTGAACC
81653369 TTAATTAACCTTAATTAA
1 TTAATTAACCTTAATTAA
*
81653387 TTAATTAAACCTTATTTAA
1 TTAATT-AACCTTAATTAA
81653406 TTAA
1 TTAA
81653410 AATTTAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (18 bp):
TTAATTAACCTTAATTAA
Found at i:81658935 original size:20 final size:19
Alignment explanation
Indices: 81658884--81658935 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
81658874 TTATTAAAAT
81658884 AAAAAA-TTTAAAATTATG
1 AAAAAATTTTAAAATTATG
***
81658902 AAAAAATAAAAAAATTTATG
1 AAAAAATTTTAAAA-TTATG
*
81658922 AAAATATTTTAAAA
1 AAAAAATTTTAAAA
81658936 AATAGAAAGT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
18 6 0.24
19 4 0.16
20 15 0.60
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAAAATTTTAAAATTATG
Found at i:81659509 original size:26 final size:26
Alignment explanation
Indices: 81659480--81659589 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
81659470 TGGTACAAAT
81659480 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81659506 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81659532 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81659558 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81659584 TGATAA
1 TGATAA
81659590 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81661613 original size:136 final size:136
Alignment explanation
Indices: 81661369--81661653 Score: 543
Period size: 136 Copynumber: 2.1 Consensus size: 136
81661359 GAGTAGTCTC
81661369 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
81661434 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
81661499 CTGTTA
131 CTGTTA
81661505 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
81661570 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
81661635 CTGTTA
131 CTGTTA
**
81661641 CCTGAATGGGCTT
1 CCCAAATGGGCTT
81661654 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 146 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:81662486 original size:5 final size:5
Alignment explanation
Indices: 81662476--81662500 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81662466 TATGTTCTTC
81662476 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
81662501 CACATTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:81662840 original size:39 final size:39
Alignment explanation
Indices: 81662790--81662885 Score: 99
Period size: 39 Copynumber: 2.5 Consensus size: 39
81662780 TTTTATATTT
* *
81662790 TTTTATGA-TTTTTATAA-CATTTTATAGTATTTTTTAAAA
1 TTTTATGATTTTTTA-AATAATTTTATA-TATTTTTAAAAA
* *
81662829 TTTTATTATTTTTTAAATAATTTTCTATATTTTTAAAAA
1 TTTTATGATTTTTTAAATAATTTTATATATTTTTAAAAA
*
81662868 TTTTA-AATTTTCTTAAAT
1 TTTTATGATTTT-TTAAAT
81662886 TTATATAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
38 5 0.10
39 31 0.63
40 13 0.27
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (39 bp):
TTTTATGATTTTTTAAATAATTTTATATATTTTTAAAAA
Found at i:81662883 original size:19 final size:18
Alignment explanation
Indices: 81662798--81662884 Score: 75
Period size: 19 Copynumber: 4.4 Consensus size: 18
81662788 TTTTTTATGA
*
81662798 TTTTTATAACATTTTATAGT
1 TTTTTA-AAAATTTTATA-T
*
81662818 ATTTTTTAAAATTTTATTAT
1 -TTTTTAAAAATTTTA-TAT
*
81662838 TTTTTAAATAATTTTCTAT
1 TTTTTAAA-AATTTTATAT
*
81662857 ATTTTTAAAAATTTTAAAT
1 -TTTTTAAAAATTTTATAT
81662876 TTTCTTAAA
1 TTT-TTAAA
81662885 TTTATATAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
18 3 0.05
19 23 0.41
20 23 0.41
21 7 0.12
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (18 bp):
TTTTTAAAAATTTTATAT
Found at i:81667429 original size:15 final size:16
Alignment explanation
Indices: 81667411--81667440 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
81667401 ATTATTTTTT
81667411 TAAAAATTA-TAAAAA
1 TAAAAATTACTAAAAA
81667426 TAAAAATTACTAAAA
1 TAAAAATTACTAAAA
81667441 GAACATTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
TAAAAATTACTAAAAA
Found at i:81668924 original size:15 final size:15
Alignment explanation
Indices: 81668904--81668933 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81668894 TAGACCCGAT
81668904 CAATTAAAATACCTA
1 CAATTAAAATACCTA
81668919 CAATTAAAATACCTA
1 CAATTAAAATACCTA
81668934 AACTATCCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (15 bp):
CAATTAAAATACCTA
Found at i:81675887 original size:24 final size:24
Alignment explanation
Indices: 81675836--81675893 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
81675826 TCCTTCATTT
* * *
81675836 TCACCCTCACCCTCAGCCTCTCCA
1 TCACCCTCATCCTCAGCATCACCA
* *
81675860 TCACCCTCATCTTCAGCATCACCC
1 TCACCCTCATCCTCAGCATCACCA
*
81675884 TCACTCTCAT
1 TCACCCTCAT
81675894 TTTGACCATC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.52, G:0.03, T:0.26
Consensus pattern (24 bp):
TCACCCTCATCCTCAGCATCACCA
Found at i:81680037 original size:22 final size:23
Alignment explanation
Indices: 81680011--81680054 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
81680001 ATACTTATAA
81680011 TTTAAAT-AATAA-AATTGGAATT
1 TTTAAATCAA-AATAATTGGAATT
81680033 TTTAAATCAAAATAATTGGAAT
1 TTTAAATCAAAATAATTGGAAT
81680055 AATTGATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (23 bp):
TTTAAATCAAAATAATTGGAATT
Found at i:81680949 original size:47 final size:47
Alignment explanation
Indices: 81680896--81681163 Score: 313
Period size: 47 Copynumber: 5.7 Consensus size: 47
81680886 TATTGGCTTT
* * *
81680896 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACCCTGATAACCTAA
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
*
81680943 GTGGCATATTTTGTATGTTGCCTTTGTGGCGTACTCTGATAGCCTTA
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
* * * *
81680990 GTGGCATATTTTGTTTGTTGCTTTTGTGGTATACTTTGATAGCCTTA
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
* * * * *
81681037 GCT-GCGTATTATGTATATTTCCTTTGTGGCGTACTCTGATAGCCTTA
1 G-TGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
*** * * * *
81681084 GTGGCATATTCAATATGTTGCTTTTGTAGCGTACTCTGATAGCCTTT
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
* * *
81681131 GTGGCGTATTCTGTATATTGCCTTTGTGGCATA
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATA
81681164 TTTTGTTTGG
Statistics
Matches: 185, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
46 1 0.01
47 183 0.99
48 1 0.01
ACGTcount: A:0.17, C:0.16, G:0.23, T:0.43
Consensus pattern (47 bp):
GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
Found at i:81681016 original size:94 final size:94
Alignment explanation
Indices: 81680896--81681160 Score: 352
Period size: 94 Copynumber: 2.8 Consensus size: 94
81680886 TATTGGCTTT
* * * * * * *
81680896 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACCCTGATAACCTAAGTGGCATATTTTGTATGT
1 GTGGCATATTTTGTATGTTGCTTTTGTGGCATACTCTGATAGCCTTAGTGGCGTATTATGTATAT
81680961 TGCCTTTGTGGCGTACTCTGATAGCCTTA
66 TGCCTTTGTGGCGTACTCTGATAGCCTTA
* * *
81680990 GTGGCATATTTTGTTTGTTGCTTTTGTGGTATACTTTGATAGCCTTAGCT-GCGTATTATGTATA
1 GTGGCATATTTTGTATGTTGCTTTTGTGGCATACTCTGATAGCCTTAG-TGGCGTATTATGTATA
*
81681054 TTTCCTTTGTGGCGTACTCTGATAGCCTTA
65 TTGCCTTTGTGGCGTACTCTGATAGCCTTA
*** * * * *
81681084 GTGGCATATTCAATATGTTGCTTTTGTAGCGTACTCTGATAGCCTTTGTGGCGTATTCTGTATAT
1 GTGGCATATTTTGTATGTTGCTTTTGTGGCATACTCTGATAGCCTTAGTGGCGTATTATGTATAT
81681149 TGCCTTTGTGGC
66 TGCCTTTGTGGC
81681161 ATATTTTGTT
Statistics
Matches: 147, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
93 1 0.01
94 145 0.99
95 1 0.01
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (94 bp):
GTGGCATATTTTGTATGTTGCTTTTGTGGCATACTCTGATAGCCTTAGTGGCGTATTATGTATAT
TGCCTTTGTGGCGTACTCTGATAGCCTTA
Found at i:81681180 original size:23 final size:25
Alignment explanation
Indices: 81680892--81681183 Score: 82
Period size: 25 Copynumber: 12.4 Consensus size: 25
81680882 ATTCTATTGG
* * *
81680892 CTTTGTGGCATATTTTGTATGTTGC
1 CTTTGTGGCATATTCTGTATATGGC
** *
81680917 CTTTGTGGCATACCCTG-ATA--AC
1 CTTTGTGGCATATTCTGTATATGGC
** * * *
81680939 CTAAGTGGCATATTTTGTATGTTGC
1 CTTTGTGGCATATTCTGTATATGGC
* *
81680964 CTTTGTGGCGTACTCTG-ATA--GC
1 CTTTGTGGCATATTCTGTATATGGC
* * * * *
81680986 CTTAGTGGCATATTTTGTTTGTTGC
1 CTTTGTGGCATATTCTGTATATGGC
* *
81681011 TTTTGTGGTATACTT-TG-ATA--GC
1 CTTTGTGGCATA-TTCTGTATATGGC
* * * **
81681033 CTTAGCT-GCGTATTATGTATATTTC
1 CTTTG-TGGCATATTCTGTATATGGC
* *
81681058 CTTTGTGGCGTACTCTG-ATA--GC
1 CTTTGTGGCATATTCTGTATATGGC
* ** * *
81681080 CTTAGTGGCATATTCAATATGTTGC
1 CTTTGTGGCATATTCTGTATATGGC
* * * *
81681105 TTTTGTAGCGTACTCTG-ATA--GC
1 CTTTGTGGCATATTCTGTATATGGC
* *
81681127 CTTTGTGGCGTATTCTGTATATTGC
1 CTTTGTGGCATATTCTGTATATGGC
*
81681152 CTTTGTGGCATATTTTGT-T-TGGC
1 CTTTGTGGCATATTCTGTATATGGC
81681175 CTTTGTGGC
1 CTTTGTGGC
81681184 GTACTCTGAT
Statistics
Matches: 190, Mismatches: 58, Indels: 40
0.66 0.20 0.14
Matches are distributed among these distances:
21 2 0.01
22 67 0.35
23 24 0.13
24 12 0.06
25 83 0.44
26 2 0.01
ACGTcount: A:0.16, C:0.16, G:0.23, T:0.45
Consensus pattern (25 bp):
CTTTGTGGCATATTCTGTATATGGC
Found at i:81692240 original size:31 final size:31
Alignment explanation
Indices: 81692151--81692240 Score: 153
Period size: 31 Copynumber: 2.9 Consensus size: 31
81692141 GTTTTCTAGC
*
81692151 AAGCTCCCTATGCAAGCTCTCTGTAATAAGT
1 AAGCTCCCTATGCAAGCTCTCTGTGATAAGT
* *
81692182 AAGCTCCTTATGCAAGCTCTCTATGATAAGT
1 AAGCTCCCTATGCAAGCTCTCTGTGATAAGT
81692213 AAGCTCCCTATGCAAGCTCTCTGTGATA
1 AAGCTCCCTATGCAAGCTCTCTGTGATA
81692241 TGTCTTTATG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 54 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (31 bp):
AAGCTCCCTATGCAAGCTCTCTGTGATAAGT
Found at i:81694310 original size:14 final size:14
Alignment explanation
Indices: 81694291--81694321 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
81694281 ATCCAAAATA
81694291 AATGCCCAATGTCC
1 AATGCCCAATGTCC
81694305 AATGCCCAATGTCC
1 AATGCCCAATGTCC
81694319 AAT
1 AAT
81694322 TACAATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.32, G:0.13, T:0.23
Consensus pattern (14 bp):
AATGCCCAATGTCC
Found at i:81702935 original size:46 final size:43
Alignment explanation
Indices: 81702852--81702974 Score: 138
Period size: 46 Copynumber: 2.7 Consensus size: 43
81702842 ATCGTGAGCT
* *
81702852 AGTGTAAGACATGTCTAGGACATGCATCGGTCTTGAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTTGAG--ATAAGCC
** **
81702898 AGTGTAAGACATGTCTGGGACATGCATCAGCTATGAGATGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCT-TGAGATAAGCC
81702942 AGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
81702975 ACAGATATGC
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
44 12 0.18
45 16 0.24
46 40 0.59
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTTGAGATAAGCC
Found at i:81704059 original size:12 final size:12
Alignment explanation
Indices: 81704044--81704069 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81704034 GTGTGCCAGG
81704044 CCGTGTGAAAAC
1 CCGTGTGAAAAC
81704056 CCGTGTGAAAAC
1 CCGTGTGAAAAC
81704068 CC
1 CC
81704070 TTATAGGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15
Consensus pattern (12 bp):
CCGTGTGAAAAC
Found at i:81705753 original size:3 final size:3
Alignment explanation
Indices: 81705745--81705812 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
81705735 AAATAAACGC
81705745 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
81705793 TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TC
81705813 ACATCAAAAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:81716203 original size:22 final size:22
Alignment explanation
Indices: 81716175--81716220 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
81716165 AAGGGAGTAA
81716175 GCTTTTAATGCTTAGAAAGTTT
1 GCTTTTAATGCTTAGAAAGTTT
*
81716197 GCTTTTAATGCTTAGTAAGTTT
1 GCTTTTAATGCTTAGAAAGTTT
81716219 GC
1 GC
81716221 ATGCAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.46
Consensus pattern (22 bp):
GCTTTTAATGCTTAGAAAGTTT
Found at i:81717526 original size:37 final size:38
Alignment explanation
Indices: 81717481--81717553 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
81717471 TAAAACTTAG
81717481 TTAATTAA-TTTTTTATTACTGGTTCAAGTTGTAATAA
1 TTAATTAATTTTTTTATTACTGGTTCAAGTTGTAATAA
81717518 TTAATTAATTTTTTTATTACTGGTTCAAGTTGTAAT
1 TTAATTAATTTTTTTATTACTGGTTCAAGTTGTAAT
81717554 TAGTAAATTC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 8 0.23
38 27 0.77
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.53
Consensus pattern (38 bp):
TTAATTAATTTTTTTATTACTGGTTCAAGTTGTAATAA
Found at i:81720900 original size:19 final size:19
Alignment explanation
Indices: 81720876--81720919 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
81720866 TGTATTTTTT
*
81720876 TGTTGTTTTTTTGGACTAA
1 TGTTGTTTATTTGGACTAA
* *
81720895 TGTTGTTTATTTGGATTGA
1 TGTTGTTTATTTGGACTAA
81720914 TGTTGT
1 TGTTGT
81720920 GTTGCTTGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.14, C:0.02, G:0.25, T:0.59
Consensus pattern (19 bp):
TGTTGTTTATTTGGACTAA
Found at i:81721177 original size:17 final size:17
Alignment explanation
Indices: 81721155--81721210 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
81721145 AAAATAAGAT
81721155 TCGAAAACTCGATTAAC
1 TCGAAAACTCGATTAAC
** * *
81721172 TCGAAAA-T-TTTTGAT
1 TCGAAAACTCGATTAAC
81721187 TCGAAAACTCGATTAAC
1 TCGAAAACTCGATTAAC
81721204 TCGAAAA
1 TCGAAAA
81721211 TTTTCGATTC
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
15 10 0.34
16 2 0.07
17 17 0.59
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (17 bp):
TCGAAAACTCGATTAAC
Found at i:81721188 original size:32 final size:32
Alignment explanation
Indices: 81721152--81721220 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
81721142 GATAAAATAA
*
81721152 GATTCGAAAACTCGATTAACTCGAAAATTTTT
1 GATTCGAAAACTCGATTAACTCGAAAATTTTC
81721184 GATTCGAAAACTCGATTAACTCGAAAATTTTC
1 GATTCGAAAACTCGATTAACTCGAAAATTTTC
81721216 GATTC
1 GATTC
81721221 AATTCGATCG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (32 bp):
GATTCGAAAACTCGATTAACTCGAAAATTTTC
Found at i:81721219 original size:19 final size:19
Alignment explanation
Indices: 81721163--81721219 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
81721153 ATTCGAAAAC
81721163 TCGATTAACTCGAAAATTT
1 TCGATTAACTCGAAAATTT
* *
81721182 TTGA-T---TCGAAAA--C
1 TCGATTAACTCGAAAATTT
81721195 TCGATTAACTCGAAAATTT
1 TCGATTAACTCGAAAATTT
81721214 TCGATT
1 TCGATT
81721220 CAATTCGATC
Statistics
Matches: 28, Mismatches: 4, Indels: 12
0.64 0.09 0.27
Matches are distributed among these distances:
13 3 0.11
14 1 0.04
15 7 0.25
17 7 0.25
18 1 0.04
19 9 0.32
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (19 bp):
TCGATTAACTCGAAAATTT
Found at i:81733202 original size:42 final size:42
Alignment explanation
Indices: 81733092--81733246 Score: 116
Period size: 43 Copynumber: 3.6 Consensus size: 42
81733082 CCGTATAATG
* * * *
81733092 CCAATGTCCCAGACGTGGTCTTACATGTAA-TCAAATATCGATG
1 CCAATGTCCCAGACATGGTCTTACACGAAACTC-AA-ATCGATA
* * * * *
81733135 CCACTATTCCAGATAAGGTCTTACACGAAA-TCAAATACGATA
1 CCAATGTCCCAGACATGGTCTTACACGAAACTCAAAT-CGATA
* * * *
81733177 CCGATGTCCCATACATGGTCTTACACCTAAATCTCAAATCGATG
1 CCAATGTCCCAGACATGGTCTTACA-CGAAA-CTCAAATCGATA
* *
81733221 CCAATGTTCCAGACATGGTCTCACAC
1 CCAATGTCCCAGACATGGTCTTACAC
81733247 AATAACACAC
Statistics
Matches: 86, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
41 2 0.02
42 24 0.28
43 29 0.34
44 25 0.29
45 6 0.07
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
CCAATGTCCCAGACATGGTCTTACACGAAACTCAAATCGATA
Found at i:81745939 original size:21 final size:21
Alignment explanation
Indices: 81745894--81745944 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
81745884 AAATGCTTGC
* *
81745894 AAAATAGTAAAAAATAACAAG
1 AAAATAGTAAAAAACAACAAA
*
81745915 AAAATAGTAAAAAACATTAAAAA
1 AAAATAGTAAAAAACA--ACAAA
81745938 AAAATAG
1 AAAATAG
81745945 CAAGGTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 15 0.60
23 10 0.40
ACGTcount: A:0.73, C:0.04, G:0.08, T:0.16
Consensus pattern (21 bp):
AAAATAGTAAAAAACAACAAA
Found at i:81747312 original size:29 final size:28
Alignment explanation
Indices: 81747264--81747330 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
81747254 GTTTAATTGT
*
81747264 TATAAATATATATAATTATTATTTAATATA
1 TATAATTATATATAATTATT-TTTAATA-A
*
81747294 TATAATTA-ATATAATTATTTTTTATAA
1 TATAATTATATATAATTATTTTTAATAA
81747321 TATAA-TATAT
1 TATAATTATAT
81747331 TTGGCCCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 2 0.06
27 8 0.24
28 6 0.18
29 11 0.32
30 7 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (28 bp):
TATAATTATATATAATTATTTTTAATAA
Found at i:81747837 original size:39 final size:39
Alignment explanation
Indices: 81747758--81747840 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
81747748 ATTAAAAATA
* *
81747758 ATATATATGTTTTATATATAGCTGAAAGTTTGAAATTTT
1 ATATATATGTTTTATATATAGCTAAAAGTATGAAATTTT
* * *
81747797 ATATATTTGTTTTATTTATAGCTAAAAGTAT-AATTATTT
1 ATATATATGTTTTATATATAGCTAAAAGTATGAAAT-TTT
81747836 ATATA
1 ATATA
81747841 ATAAAAAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
38 3 0.08
39 35 0.92
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (39 bp):
ATATATATGTTTTATATATAGCTAAAAGTATGAAATTTT
Found at i:81754856 original size:16 final size:17
Alignment explanation
Indices: 81754824--81754862 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
81754814 CAAGGGTACT
*
81754824 TTTTTTCTTTGTCTTTC
1 TTTTTTCTTTATCTTTC
81754841 TTTTTTCTTTAT-TTTC
1 TTTTTTCTTTATCTTTC
81754857 TTTTTT
1 TTTTTT
81754863 ATCTACTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTTCTTTATCTTTC
Found at i:81755527 original size:3 final size:3
Alignment explanation
Indices: 81755521--81755869 Score: 143
Period size: 3 Copynumber: 117.3 Consensus size: 3
81755511 TTTTGTTGTT
* *
81755521 TTA TTA -TA TTA TTA CTA TTA TTA TTA -TA CTT- GTA TT- TATA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA T-TA -TTA
* ** * *
81755565 TT- TTA TT- TTA ATA CCA TTA TTA TTA CTA CTT- CTA TTA TT- TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
* *
81755606 TTA CTA TTA TTA TTT TTCA TATA TATA TATA TATA TTA TTA TT- TATA
1 TTA TTA TTA TTA TTA TT-A T-TA T-TA T-TA T-TA TTA TTA TTA T-TA
* * * * * * *
81755653 TTA TTG TTA TCA TTA CTA TTA TTA ATA TTC TTA TTA TTG CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
81755701 TTT TTA CTA TTA TTA CTA TTT TTA TTTA CTT- TTA TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA
* * * * * * *
81755747 TTA TTA TTA TCA -TC TTA TT- TTA TTA CTA TTA TCA TTT TTG TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * * *
81755793 CTA TTA CTA TT- TTT TTA -AA CTA CTA CTA CTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
81755839 TTA TTA TTA TTA GTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
81755870 ATTTTTTTGT
Statistics
Matches: 259, Mismatches: 65, Indels: 44
0.70 0.18 0.12
Matches are distributed among these distances:
2 23 0.09
3 209 0.81
4 25 0.10
5 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:81755749 original size:34 final size:34
Alignment explanation
Indices: 81755711--81755777 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
81755701 TTTTTACTAT
* * *
81755711 TATTACTATTTTTAT-TTACTTTTATTATTATTAA
1 TATTACTATTATCATCTTA-TTTTATTACTATTAA
*
81755745 TATTATTATTATCATCTTATTTTATTACTATTA
1 TATTACTATTATCATCTTATTTTATTACTATTA
81755778 TCATTTTTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 25 0.89
35 3 0.11
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (34 bp):
TATTACTATTATCATCTTATTTTATTACTATTAA
Found at i:81766546 original size:31 final size:29
Alignment explanation
Indices: 81766488--81766593 Score: 86
Period size: 31 Copynumber: 3.4 Consensus size: 29
81766478 TGAATATTTT
* *
81766488 ATTTGGTACCTGAACTTCATACGTTTTTCTA
1 ATTTGGTACTTGAACTT-AAAC-TTTTTCTA
*
81766519 ATTTGGTACTTGAACTTAACATTTTTTTCCCTA
1 ATTTGGTACTTGAACTTAA-A-CTTTTT--CTA
* * *
81766552 ATTTGATACATGAAGTTGAAACTTTTTCTTA
1 ATTTGGTACTTGAACTT-AAACTTTTTC-TA
81766583 ATTTGGTACTT
1 ATTTGGTACTT
81766594 AATCTTTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
30 2 0.03
31 33 0.55
32 5 0.08
33 18 0.30
34 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.47
Consensus pattern (29 bp):
ATTTGGTACTTGAACTTAAACTTTTTCTA
Found at i:81768367 original size:78 final size:84
Alignment explanation
Indices: 81768212--81768372 Score: 217
Period size: 78 Copynumber: 2.0 Consensus size: 84
81768202 AATGTAAAAT
*
81768212 AAATAAATTATTATTTATAAAATAAAACTAAAAGAGAGAGAGAGAAAAGTTTAAATATGGCTTAA
1 AAATAAATTATTATTTATAAAATAAAACTAAAAGAGAGAGAGAGAAAAGTTTAAATATGACTTAA
* *
81768277 GTCTTGTTTGTGGGTTTTA
66 ATCTTGTTTGTGGATTTTA
* * * *
81768296 AAATAAATTATTATTTATAAAATTAAA-TTAAA-A-A-A-A-AGAAAAGTTTGAATATGATTTAA
1 AAATAAATTATTATTTATAAAATAAAACTAAAAGAGAGAGAGAGAAAAGTTTAAATATGACTTAA
81768355 ATCTTGTTTGTGGATTTT
66 ATCTTGTTTGTGGATTTT
81768373 TTAAAAATAT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
78 36 0.51
79 1 0.01
80 1 0.01
81 1 0.01
82 1 0.01
83 4 0.06
84 26 0.37
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.38
Consensus pattern (84 bp):
AAATAAATTATTATTTATAAAATAAAACTAAAAGAGAGAGAGAGAAAAGTTTAAATATGACTTAA
ATCTTGTTTGTGGATTTTA
Found at i:81777697 original size:31 final size:31
Alignment explanation
Indices: 81777662--81777722 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
81777652 ACATCAAAAA
81777662 TACTAAAAACATCAAAAAAATATTTCTCAAT
1 TACTAAAAACATCAAAAAAATATTTCTCAAT
81777693 TACTAAAAACATCAAAAAAATATTTCTCAA
1 TACTAAAAACATCAAAAAAATATTTCTCAA
81777723 CCAATTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (31 bp):
TACTAAAAACATCAAAAAAATATTTCTCAAT
Done.