Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 270 of 335
Found at i:81779135 original size:22 final size:22
Alignment explanation
Indices: 81779109--81779213 Score: 85
Period size: 22 Copynumber: 5.0 Consensus size: 22
81779099 TCGATTATTG
* *
81779109 GCACATTAATGCTCTCCGTTTA
1 GCACATTAGTGCTCTCTGTTTA
* *
81779131 GCACATTTGTGCTCTCTGTATA
1 GCACATTAGTGCTCTCTGTTTA
* *
81779153 --ACA--A-TGCTTTCCGTTTA
1 GCACATTAGTGCTCTCTGTTTA
* *
81779170 GCACATTTGTGCTCTCTGTATA
1 GCACATTAGTGCTCTCTGTTTA
* *
81779192 ACACTTTAGTGCTCTCTGTTTA
1 GCACATTAGTGCTCTCTGTTTA
81779214 ATAGTGCATA
Statistics
Matches: 62, Mismatches: 16, Indels: 10
0.70 0.18 0.11
Matches are distributed among these distances:
17 10 0.16
19 3 0.05
20 3 0.05
22 46 0.74
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (22 bp):
GCACATTAGTGCTCTCTGTTTA
Found at i:81779170 original size:39 final size:39
Alignment explanation
Indices: 81779116--81779194 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
81779106 TTGGCACATT
81779116 AATGCTCTCCGTTTAGCACATTTGTGCTCTCTGTATAAC
1 AATGCTCTCCGTTTAGCACATTTGTGCTCTCTGTATAAC
*
81779155 AATGCTTTCCGTTTAGCACATTTGTGCTCTCTGTATAAC
1 AATGCTCTCCGTTTAGCACATTTGTGCTCTCTGTATAAC
81779194 A
1 A
81779195 CTTTAGTGCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (39 bp):
AATGCTCTCCGTTTAGCACATTTGTGCTCTCTGTATAAC
Found at i:81780035 original size:17 final size:18
Alignment explanation
Indices: 81780009--81780057 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
81779999 GTTTATCAAT
81780009 ATTATTCAGTAACAATCA
1 ATTATTCAGTAACAATCA
**
81780027 ATT-TTCAGTAGTAATCA
1 ATTATTCAGTAACAATCA
*
81780044 GTTATTCAGTAACA
1 ATTATTCAGTAACA
81780058 GTTAGTCGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (18 bp):
ATTATTCAGTAACAATCA
Found at i:81781021 original size:12 final size:11
Alignment explanation
Indices: 81780981--81781021 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
81780971 TTGATATTTA
81780981 AATTTCTTATTC
1 AATTTC-TATTC
81780993 AATTTCTATTC
1 AATTTCTATTC
*
81781004 AATTTCTACTTT
1 AATTTCTA-TTC
81781016 AATTTC
1 AATTTC
81781022 AATTTTGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (11 bp):
AATTTCTATTC
Found at i:81781429 original size:17 final size:17
Alignment explanation
Indices: 81781407--81781445 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
81781397 AAAATCCCTA
81781407 TTTCTCCCTTTT-CTTTC
1 TTTCT-CCTTTTCCTTTC
*
81781424 TTTCTCTTTTTCCTTTC
1 TTTCTCCTTTTCCTTTC
81781441 TTTCT
1 TTTCT
81781446 TTCTCCCCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTCTCCTTTTCCTTTC
Found at i:81781510 original size:2 final size:2
Alignment explanation
Indices: 81781503--81781530 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81781493 TTGTTTCTTT
81781503 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81781531 CTAAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81781797 original size:3 final size:3
Alignment explanation
Indices: 81781789--81781854 Score: 123
Period size: 3 Copynumber: 21.7 Consensus size: 3
81781779 ACTTTATTTG
81781789 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
81781835 ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
81781855 TTAATAAATA
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 59 0.95
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:81782114 original size:24 final size:24
Alignment explanation
Indices: 81782058--81782114 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
81782048 TCTATTTTTG
* *
81782058 TACATTTGAACAATATTAATACCA
1 TACATTTGTACAATATCAATACCA
81782082 TACATTTGTACAATATCAATACCA
1 TACATTTGTACAATATCAATACCA
*
81782106 TACAATTGT
1 TACATTTGT
81782115 CATAGATTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.42, C:0.18, G:0.05, T:0.35
Consensus pattern (24 bp):
TACATTTGTACAATATCAATACCA
Found at i:81782414 original size:3 final size:3
Alignment explanation
Indices: 81782406--81782478 Score: 146
Period size: 3 Copynumber: 24.3 Consensus size: 3
81782396 TTAACTTATT
81782406 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
81782454 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
81782479 CTAAATTAAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:81789854 original size:20 final size:20
Alignment explanation
Indices: 81789780--81789846 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
81789770 GACCAAGGGT
* *
81789780 AAAGTATTGATACTTTGAAA
1 AAAGTATAGATACTTTGAGA
* *
81789800 AAAGTATAGATACTTTTAGC
1 AAAGTATAGATACTTTGAGA
* *
81789820 AAAGTGTAGATACTTTGAGT
1 AAAGTATAGATACTTTGAGA
81789840 AAAGTAT
1 AAAGTAT
81789847 CAGTACTTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (20 bp):
AAAGTATAGATACTTTGAGA
Found at i:81792813 original size:29 final size:29
Alignment explanation
Indices: 81792779--81792881 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
81792769 TAATCAGCCG
** *
81792779 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
81792808 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
81792837 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
81792866 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81792882 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:81801127 original size:17 final size:18
Alignment explanation
Indices: 81801097--81801130 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81801087 AATTTTTATT
*
81801097 CAATTTATTCCCTAATTC
1 CAATTTAATCCCTAATTC
81801115 CAATTTAAT-CCTAATT
1 CAATTTAATCCCTAATT
81801131 AACTCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (18 bp):
CAATTTAATCCCTAATTC
Found at i:81801576 original size:17 final size:17
Alignment explanation
Indices: 81801554--81801588 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
81801544 TGTTCTCTGC
81801554 TTCTTTT-CTGTTCTTTT
1 TTCTTTTACT-TTCTTTT
81801571 TTCTTTTACTTTCTTTT
1 TTCTTTTACTTTCTTTT
81801588 T
1 T
81801589 ATTCTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (17 bp):
TTCTTTTACTTTCTTTT
Found at i:81801887 original size:2 final size:2
Alignment explanation
Indices: 81801880--81801911 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
81801870 AAATATACAA
81801880 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81801912 TACCACATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81801999 original size:3 final size:3
Alignment explanation
Indices: 81801991--81802056 Score: 105
Period size: 3 Copynumber: 21.7 Consensus size: 3
81801981 TTTTAAATCA
*
81801991 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
81802039 AAC AAT AAT AATT AAT AA
1 AAT AAT AAT AA-T AAT AA
81802057 AATCTTCCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
3 55 0.95
4 3 0.05
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:81802312 original size:33 final size:33
Alignment explanation
Indices: 81802270--81802335 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
81802260 GGGTCATTAC
81802270 ATAGATCATTATATTTTGGAAAACCAAGTTTGT
1 ATAGATCATTATATTTTGGAAAACCAAGTTTGT
81802303 ATAGATCATTATATTTTGGAAAACCAAGTTTGT
1 ATAGATCATTATATTTTGGAAAACCAAGTTTGT
81802336 TTCTTGAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.39
Consensus pattern (33 bp):
ATAGATCATTATATTTTGGAAAACCAAGTTTGT
Found at i:81808765 original size:18 final size:17
Alignment explanation
Indices: 81808733--81808766 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
81808723 TTTAGTTATT
81808733 TGTTTTTTAATTTAATC
1 TGTTTTTTAATTTAATC
*
81808750 TGTTTGTTTTATTTAAT
1 TGTTT-TTTAATTTAAT
81808767 TTTATCATCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.68
Consensus pattern (17 bp):
TGTTTTTTAATTTAATC
Found at i:81810574 original size:17 final size:18
Alignment explanation
Indices: 81810552--81810586 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
81810542 ATGTTTAGTT
81810552 ATTTGTTT-TTTAATTTA
1 ATTTGTTTGTTTAATTTA
*
81810569 ATTTGTTTGTTTTATTTA
1 ATTTGTTTGTTTAATTTA
81810587 GTTTTTCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71
Consensus pattern (18 bp):
ATTTGTTTGTTTAATTTA
Found at i:81812393 original size:15 final size:15
Alignment explanation
Indices: 81812373--81812402 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81812363 TCGTGTTTTT
81812373 TTTTTTAGTTTTTAA
1 TTTTTTAGTTTTTAA
81812388 TTTTTTAGTTTTTAA
1 TTTTTTAGTTTTTAA
81812403 ATTTATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (15 bp):
TTTTTTAGTTTTTAA
Found at i:81812711 original size:21 final size:21
Alignment explanation
Indices: 81812687--81812730 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
81812677 CACTAAAAAA
81812687 AAGTTAAAATAAAAGTTTTCT
1 AAGTTAAAATAAAAGTTTTCT
81812708 AAGTTAAAATAAAAGTTTTCT
1 AAGTTAAAATAAAAGTTTTCT
81812729 AA
1 AA
81812731 CACATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (21 bp):
AAGTTAAAATAAAAGTTTTCT
Found at i:81812841 original size:39 final size:41
Alignment explanation
Indices: 81812757--81812846 Score: 130
Period size: 39 Copynumber: 2.2 Consensus size: 41
81812747 TAAAAAATAT
** * *
81812757 TTATATTAAAAAACACTACTTTAAATATAATAAATGTTTTC
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
81812798 TTATATTAAAAAACAC-A-AATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
81812837 TTATATTAAA
1 TTATATTAAA
81812847 TATTATTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 28 0.62
40 1 0.02
41 16 0.36
ACGTcount: A:0.52, C:0.07, G:0.01, T:0.40
Consensus pattern (41 bp):
TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
Found at i:81814032 original size:3 final size:3
Alignment explanation
Indices: 81814024--81814060 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
81814014 AACTCATCTC
81814024 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
81814061 GGGGAAAGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:81815200 original size:14 final size:14
Alignment explanation
Indices: 81815181--81815209 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81815171 ATATATTGCA
81815181 GTTTATCAACAAGC
1 GTTTATCAACAAGC
81815195 GTTTATCAACAAGC
1 GTTTATCAACAAGC
81815209 G
1 G
81815210 ATATGAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (14 bp):
GTTTATCAACAAGC
Found at i:81823268 original size:41 final size:41
Alignment explanation
Indices: 81823211--81823312 Score: 127
Period size: 41 Copynumber: 2.5 Consensus size: 41
81823201 GCTCGATTGT
* * *
81823211 CTTCGGGACA-TAGCCCGGTTTTTGGTAACTT-GCACAAATGC
1 CTTCGGGA-ATTAGCCCGG-ATTTAGTAACTTAGCACAAAAGC
*
81823252 CTTCGGGAATTAGCCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTTAGCACAAAAGC
*
81823293 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGAATTAGCCCGGAT
81823313 ACCATTCGAA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 10 0.19
41 44 0.81
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (41 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTTAGCACAAAAGC
Found at i:81826372 original size:29 final size:28
Alignment explanation
Indices: 81826284--81826385 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
81826274 TACTCAATCA
* *
81826284 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
81826313 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
81826342 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
81826371 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
81826386 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:81834402 original size:40 final size:41
Alignment explanation
Indices: 81834358--81834535 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 41
81834348 GCTCGATTGT
* *
81834358 CTTCGGGACATAGCCCGG-TTATAGTGA-TTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTTCGCACAAATGC
*
81834398 CTTCGGGA-ATTAGCCCGGATTTAGAAAC-TCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTTCGCACAAATGC
* * * * * *
81834438 CTTTGGGACTTAACCCGGTTTTGGTAACTT-GTACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTTCGCACAAATGC
* * * *
81834478 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGATTTAGTAACTTCGCACAAATGC
*
81834519 CTTCGGGACTTAGCCCG
1 CTTCGGGACATAGCCCG
81834536 AATACCATTC
Statistics
Matches: 109, Mismatches: 21, Indels: 15
0.75 0.14 0.10
Matches are distributed among these distances:
39 2 0.02
40 82 0.75
41 23 0.21
42 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (41 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTTCGCACAAATGC
Found at i:81834456 original size:80 final size:81
Alignment explanation
Indices: 81834358--81834535 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 81
81834348 GCTCGATTGT
* * *
81834358 CTTCGGGACATAGCCCGGTTATAGTGA-TTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTA
1 CTTCGGGACTTAGCCCGGTTATAGTAACTT-GCACAAATGCCTTCGGGAATTGA-CCCGGATTTA
* *
81834421 GAAAC-TCGCACAAATGC
64 GAAACTTAGCACAAAAGC
* * * * * *
81834438 CTTTGGGACTTAACCCGGTTTTGGTAACTTGTACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAATTGACCCGGATTTAGA
*
81834503 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
81834519 CTTCGGGACTTAGCCCG
1 CTTCGGGACTTAGCCCG
81834536 AATACCATTC
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
80 53 0.65
81 28 0.35
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAATTGACCCGGATTTAGA
AACTTAGCACAAAAGC
Found at i:81836664 original size:16 final size:16
Alignment explanation
Indices: 81836643--81836675 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
81836633 TATGAACAAC
*
81836643 ATGAAAATCATCATAT
1 ATGAAAATCAACATAT
81836659 ATGAAAATCAACATAT
1 ATGAAAATCAACATAT
81836675 A
1 A
81836676 CTAAGTTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (16 bp):
ATGAAAATCAACATAT
Found at i:81843108 original size:49 final size:49
Alignment explanation
Indices: 81843048--81843351 Score: 482
Period size: 49 Copynumber: 6.4 Consensus size: 49
81843038 TACATATGTG
* * * *
81843048 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
81843097 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
81843146 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81843195 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81843238 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81843284 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81843333 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
81843352 TAATGTAAAA
Statistics
Matches: 238, Mismatches: 8, Indels: 18
0.90 0.03 0.07
Matches are distributed among these distances:
40 33 0.14
41 2 0.01
42 1 0.00
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 1 0.00
48 2 0.01
49 191 0.80
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:81843251 original size:89 final size:89
Alignment explanation
Indices: 81843053--81843330 Score: 430
Period size: 89 Copynumber: 3.0 Consensus size: 89
81843043 ATGTGTGTGA
* * * *
81843053 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
*
81843118 ATGTGATGAATGTGAAAGTGGATGTATATG
66 ATGTGGTGAATGTGAAA---G-TG--TATG
81843148 TGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGG
1 T-A--AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGG
81843213 CCGATGTGGTGAATGTGAAAGTGTATG
63 CCGATGTGGTGAATGTGAAAGTGTATG
81843240 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
81843305 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
81843329 TA
1 TA
81843331 TATGTGATAA
Statistics
Matches: 175, Mismatches: 5, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
89 89 0.51
91 1 0.01
92 5 0.03
94 2 0.01
95 2 0.01
96 1 0.01
98 75 0.43
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (89 bp):
TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
ATGTGGTGAATGTGAAAGTGTATG
Found at i:81843326 original size:138 final size:138
Alignment explanation
Indices: 81843102--81843351 Score: 473
Period size: 138 Copynumber: 1.8 Consensus size: 138
81843092 GTATATGTGA
*
81843102 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCG
81843167 ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAA
66 ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAA
81843232 AGTGTATG
131 AGTGTATG
* *
81843240 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCG
81843305 ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
66 ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
81843352 TAATGTAAAA
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
138 109 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (138 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCG
ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAA
AGTGTATG
Found at i:81843503 original size:37 final size:37
Alignment explanation
Indices: 81843453--81843537 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
81843443 GGAATATGTT
*
81843453 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
81843490 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
81843527 CCGGGTAAGAC
1 CCGGGTAAGAC
81843538 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:81845408 original size:40 final size:40
Alignment explanation
Indices: 81845353--81845517 Score: 240
Period size: 40 Copynumber: 4.1 Consensus size: 40
81845343 GAGAATTGAG
*
81845353 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
81845393 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
81845433 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
81845473 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
81845513 AGTGA
1 AGTGA
81845518 CGTGTATTCG
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 116 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
Found at i:81845733 original size:29 final size:29
Alignment explanation
Indices: 81845691--81845854 Score: 292
Period size: 29 Copynumber: 5.7 Consensus size: 29
81845681 CGAATGAATA
81845691 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
81845720 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
81845749 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
81845778 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
81845807 GAGGCACTACGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
81845836 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
81845855 TTTTTCAACA
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 131 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:81846435 original size:40 final size:41
Alignment explanation
Indices: 81846338--81846436 Score: 105
Period size: 41 Copynumber: 2.4 Consensus size: 41
81846328 TTCGAATGGT
* ** * * *
81846338 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTACGAAGTCACTAA
81846379 ATCCGGGCTAAT-TCCCGAAGGCAATTGTACGAA-TCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTACGAAGTCACTA-A
81846420 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
81846437 GAACAATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.37
41 28 0.57
42 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTACGAAGTCACTAA
Found at i:81849358 original size:49 final size:49
Alignment explanation
Indices: 81849231--81849484 Score: 402
Period size: 49 Copynumber: 5.4 Consensus size: 49
81849221 TACATATGTG
* * * *
81849231 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81849280 TGTGAT-AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81849328 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81849371 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81849417 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81849466 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
81849485 TAATGTAAAA
Statistics
Matches: 191, Mismatches: 4, Indels: 20
0.89 0.02 0.09
Matches are distributed among these distances:
40 33 0.17
41 2 0.01
42 1 0.01
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 1 0.01
48 46 0.24
49 100 0.52
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:81849384 original size:89 final size:90
Alignment explanation
Indices: 81849231--81849465 Score: 364
Period size: 89 Copynumber: 2.5 Consensus size: 90
81849221 TACATATGTG
* * * *
81849231 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TATGT-ATAGGCCTAATG
81849296 GCCGATGTGGTGAATGTGAAAGTGTATGTATA
59 GCCGATGTGGTGAATGTGAAAGTGTATGTATA
81849328 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTA-AGGCCTAATGGCCGATG
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATAGGCCTAATGGCCGATG
81849392 TGGTGAATGTGAAAGTGTATGTATA
66 TGGTGAATGTGAAAGTGTATGTATA
81849417 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
81849466 TGTGATAAGG
Statistics
Matches: 133, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
89 89 0.67
90 2 0.02
91 5 0.04
93 2 0.02
95 1 0.01
97 34 0.26
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (90 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATAGGCCTAATGGCCGATG
TGGTGAATGTGAAAGTGTATGTATA
Found at i:81849468 original size:138 final size:137
Alignment explanation
Indices: 81849236--81849484 Score: 453
Period size: 138 Copynumber: 1.8 Consensus size: 137
81849226 ATGTGTGTGA
81849236 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAGGCCTAATGGCCGA
1 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAGGCCTAATGGCCGA
81849301 TGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA
66 TGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA
81849366 GTGTATG
131 GTGTATG
* * * *
81849373 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGAT-AGGCCTAATGGCCG
81849438 ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
65 ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
81849485 TAATGTAAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
137 46 0.43
138 61 0.57
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.29
Consensus pattern (137 bp):
TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAGGCCTAATGGCCGA
TGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA
GTGTATG
Found at i:81849636 original size:37 final size:37
Alignment explanation
Indices: 81849586--81849670 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
81849576 GGAATATGTT
*
81849586 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
81849623 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
81849660 CCGGGTAAGAC
1 CCGGGTAAGAC
81849671 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:81851533 original size:22 final size:23
Alignment explanation
Indices: 81851508--81851553 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
81851498 CAACCAAACC
81851508 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
81851530 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
81851553 A
1 A
81851554 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:81851559 original size:23 final size:23
Alignment explanation
Indices: 81851515--81851559 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
81851505 ACCAATTCAA
*
81851515 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
81851538 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
81851560 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:81860806 original size:24 final size:23
Alignment explanation
Indices: 81860747--81860874 Score: 104
Period size: 24 Copynumber: 5.4 Consensus size: 23
81860737 AGTCATGGTC
*
81860747 GGTAAACTCTTATTGAGCTGATAAA
1 GGTAAGCTC-TATTGAGCTGA-AAA
*
81860772 CAGTAAGCTCTATTGAGCTGAAAA
1 -GGTAAGCTCTATTGAGCTGAAAA
*
81860796 TGGTAAGCTCTATTGAGCTGAACA
1 -GGTAAGCTCTATTGAGCTGAAAA
*
81860820 -GTAAGCTCT-TTCGAGCTGAATCA
1 GGTAAGCTCTATT-GAGCTGAA-AA
*
81860843 -GTAAGCTAC-AATGAGCTGAAATA
1 GGTAAGCT-CTATTGAGCTGAAA-A
81860866 -GTAAGCTCT
1 GGTAAGCTCT
81860875 TACGAGCTAT
Statistics
Matches: 89, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
21 2 0.02
22 18 0.20
23 25 0.28
24 26 0.29
25 11 0.12
26 7 0.08
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (23 bp):
GGTAAGCTCTATTGAGCTGAAAA
Found at i:81860826 original size:46 final size:48
Alignment explanation
Indices: 81860747--81860839 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 48
81860737 AGTCATGGTC
81860747 GGTAAACTCTTATTGAGCTGATAAACAGTAAGCTCTATT-GAGCTGAAAAT
1 GGTAAACTCTTATTGAGCTG--AAACAGTAAGCTCT-TTCGAGCTGAAAAT
*
81860797 GGTAAGCTC-TATTGAGCTG-AACAGTAAGCTCTTTCGAGCTGAA
1 GGTAAACTCTTATTGAGCTGAAACAGTAAGCTCTTTCGAGCTGAA
81860840 TCAGTAAGCT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
45 2 0.05
46 21 0.51
49 10 0.24
50 8 0.20
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (48 bp):
GGTAAACTCTTATTGAGCTGAAACAGTAAGCTCTTTCGAGCTGAAAAT
Found at i:81860848 original size:23 final size:23
Alignment explanation
Indices: 81860759--81860875 Score: 109
Period size: 23 Copynumber: 5.0 Consensus size: 23
81860749 TAAACTCTTA
*
81860759 TTGAGCTGATAAACAGTAAGCTCT
1 TTGAGCTGA-AATCAGTAAGCTCT
*
81860783 ATTGAGCTGAAAAT-GGTAAGCTCT
1 -TTGAGCTG-AAATCAGTAAGCTCT
81860807 ATTGAGCTG-AA-CAGTAAGCTCT
1 -TTGAGCTGAAATCAGTAAGCTCT
*
81860829 TTCGAGCTG-AATCAGTAAGCTACA
1 TT-GAGCTGAAATCAGTAAGCT-CT
*
81860853 ATGAGCTGAAAT-AGTAAGCTCT
1 TTGAGCTGAAATCAGTAAGCTCT
81860875 T
1 T
81860876 ACGAGCTATG
Statistics
Matches: 79, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
21 2 0.03
22 20 0.25
23 23 0.29
24 23 0.29
25 10 0.13
26 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.28
Consensus pattern (23 bp):
TTGAGCTGAAATCAGTAAGCTCT
Found at i:81866611 original size:30 final size:30
Alignment explanation
Indices: 81866575--81866637 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
81866565 ACATTTTTCA
81866575 TAGAGACAGAGTTTTTAATATTCAAAAATT
1 TAGAGACAGAGTTTTTAATATTCAAAAATT
81866605 TAGAGACAGAGTTTTTAATATTCAAAAATT
1 TAGAGACAGAGTTTTTAATATTCAAAAATT
81866635 TAG
1 TAG
81866638 TATGATACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (30 bp):
TAGAGACAGAGTTTTTAATATTCAAAAATT
Found at i:81872006 original size:39 final size:39
Alignment explanation
Indices: 81871954--81872113 Score: 284
Period size: 39 Copynumber: 4.1 Consensus size: 39
81871944 AATTATATTA
* *
81871954 CCAGCACAAAGCCTGCGGGACTTTAGCCGGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
81871993 CCTGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
81872032 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
81872071 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
81872110 CCAG
1 CCAG
81872114 TATCTTGCAT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:81873046 original size:2 final size:2
Alignment explanation
Indices: 81873039--81873064 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
81873029 GATCAAATAA
81873039 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
81873065 TCACCTTCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81877058 original size:46 final size:46
Alignment explanation
Indices: 81876877--81877059 Score: 269
Period size: 46 Copynumber: 4.0 Consensus size: 46
81876867 TTTGACATGA
* * * * *
81876877 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
81876923 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
81876969 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
81877015 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
81877060 CAGTCTTACA
Statistics
Matches: 126, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 4 0.03
46 122 0.97
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:81877066 original size:24 final size:24
Alignment explanation
Indices: 81877038--81877083 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
81877028 TTCAACCATG
81877038 GTCTTACACATTTCATATCAGGCA
1 GTCTTACACATTTCATATCAGGCA
81877062 GTCTTACACATTTCATATCAGG
1 GTCTTACACATTTCATATCAGG
81877084 TTGCCATGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (24 bp):
GTCTTACACATTTCATATCAGGCA
Found at i:81877071 original size:70 final size:70
Alignment explanation
Indices: 81876992--81877128 Score: 274
Period size: 70 Copynumber: 2.0 Consensus size: 70
81876982 TTCAACCATG
81876992 GTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATC
1 GTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATC
81877057 AGGCA
66 AGGCA
81877062 GTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATC
1 GTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATC
81877127 AG
66 AG
81877129 AGAGCCCATT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (70 bp):
GTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATC
AGGCA
Found at i:81882125 original size:38 final size:39
Alignment explanation
Indices: 81882075--81882286 Score: 183
Period size: 46 Copynumber: 4.9 Consensus size: 39
81882065 CTGATATGAA
81882075 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
81882114 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
**
81882157 AAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGG---CA--ACCT--G
* *
81882205 ATGTGTAAGACGATGGTTGAAAGATACCATGGCAACGTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
81882244 CAATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
81882287 ATGACAGAAA
Statistics
Matches: 144, Mismatches: 7, Indels: 37
0.77 0.04 0.20
Matches are distributed among these distances:
38 36 0.25
39 1 0.01
41 5 0.03
43 4 0.03
44 1 0.01
46 93 0.65
48 1 0.01
49 2 0.01
51 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:81882181 original size:46 final size:46
Alignment explanation
Indices: 81882114--81882330 Score: 276
Period size: 46 Copynumber: 4.7 Consensus size: 46
81882104 TGGCAACCTG
*
81882114 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAA
* *
81882160 TGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAA
* *
81882206 TGTGTAAGACGATGGTTGAAAGATACCATGGCAACGTGCA-ATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG-ATATGAAA
* ** *
81882252 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAA
** * * *
81882298 TGACTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
81882331 TCACGTCAAA
Statistics
Matches: 151, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
45 2 0.01
46 148 0.98
47 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAA
Found at i:81882308 original size:138 final size:130
Alignment explanation
Indices: 81882066--81882320 Score: 341
Period size: 138 Copynumber: 1.9 Consensus size: 130
81882056 GTGTGCTCTC
*
81882066 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTT
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGTT
* * ** *
81882131 GAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACA
66 GAAAGATACCATGGCAACATGACATGAAATGACTAAGACCATAGTTGAAAGATACCATGGAAACA
* * *
81882196 TGATATGAGATGTGTAAGACGATGGTTGAAAGATACCATGGCAACGTGCAATGAAAAGAATAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAGA
81882261 CCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGACTAAGACCATAGTTGAAAGA
58 CCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGACTAAGACCATAGTTGAAAGA
81882321 CACTATGGCA
Statistics
Matches: 107, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
130 45 0.42
133 2 0.02
136 1 0.01
137 1 0.01
138 58 0.54
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (130 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGTT
GAAAGATACCATGGCAACATGACATGAAATGACTAAGACCATAGTTGAAAGATACCATGGAAACA
Found at i:81882636 original size:23 final size:25
Alignment explanation
Indices: 81882591--81882637 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
81882581 AATAAATATA
*
81882591 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
81882616 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
81882638 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:81889704 original size:46 final size:45
Alignment explanation
Indices: 81889653--81889792 Score: 113
Period size: 46 Copynumber: 3.0 Consensus size: 45
81889643 TTACACTGAA
81889653 ACATCTCATAATCGATGCATGTCTCAGACATGTCTTACACTGGCTT
1 ACATCTCA-AATCGATGCATGTCTCAGACATGTCTTACACTGGCTT
*** * * * *
81889699 ACATCTCGAGGCCGATGCATATCCCAGACATATCTTACACTAGCTCT
1 ACATCTC-AAATCGATGCATGTCTCAGACATGTCTTACACTGGCT-T
* * *
81889746 -CGTCTC-AATGCCGATGCCATGTTTTAGACATGGTCTTACACTGGCTT
1 ACATCTCAAAT--CGATG-CATGTCTCAGACAT-GTCTTACACTGGCTT
81889793 TCATAATGTG
Statistics
Matches: 71, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
46 46 0.65
47 13 0.18
48 12 0.17
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (45 bp):
ACATCTCAAATCGATGCATGTCTCAGACATGTCTTACACTGGCTT
Found at i:81895803 original size:2 final size:2
Alignment explanation
Indices: 81895796--81895827 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
81895786 AAGGCATGTA
81895796 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81895828 GCGTGTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81896638 original size:40 final size:40
Alignment explanation
Indices: 81896594--81896707 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 40
81896584 TGATACTTGA
* * *
81896594 GGAATGTTATCCGGGCCTAATGACCCGCAGGCTTTATGTT
1 GGAATGTTATCCGGGCCTAAAGACCCGCAGGCTATATGCT
*
81896634 GGAAT-TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
1 GGAATGT-TATCCGGGCCTAAAGACCCGCAGGCTATATGCT
* * * *
81896674 GGAATGTTATCCAGGCTTAAAGATCTGCAGGCTA
1 GGAATGTTATCCGGGCCTAAAGACCCGCAGGCTA
81896708 CGAGCTAGTA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.02
40 63 0.97
41 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GGAATGTTATCCGGGCCTAAAGACCCGCAGGCTATATGCT
Found at i:81904140 original size:40 final size:40
Alignment explanation
Indices: 81904066--81904211 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
81904056 CCGCACCAAG
* * * * * *
81904066 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
81904106 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
81904146 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
81904186 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
81904212 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:81904226 original size:40 final size:40
Alignment explanation
Indices: 81904098--81904249 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
81904088 ATCACGATTT
* * * * *
81904098 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
81904138 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
81904178 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
81904218 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
81904250 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:81912339 original size:39 final size:40
Alignment explanation
Indices: 81912161--81912343 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
81912151 CCGCACCAAG
* * * * * * * *
81912161 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
81912201 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
81912241 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
81912281 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
81912320 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
81912344 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:81914673 original size:28 final size:28
Alignment explanation
Indices: 81914633--81914702 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
81914623 ATAGTAAGTC
*
81914633 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
81914661 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
81914689 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81914703 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:81915158 original size:2 final size:2
Alignment explanation
Indices: 81915153--81915197 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
81915143 TCACACATGC
81915153 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81915195 AT A
1 AT A
81915198 GGACATTCAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81922508 original size:28 final size:28
Alignment explanation
Indices: 81922468--81922537 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
81922458 ATAGTAAGTC
*
81922468 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
**
81922496 CGCACACTTAGTGCTATACAATTTAACT
1 CGCACACTTAGTGCTATACAATCAAACT
81922524 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81922538 CAATCTCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:81922993 original size:2 final size:2
Alignment explanation
Indices: 81922988--81923022 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
81922978 TCACACATGC
81922988 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81923023 ATTGGACATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81923203 original size:2 final size:2
Alignment explanation
Indices: 81923196--81923223 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81923186 CCGAATATGC
81923196 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81923224 CAACTATACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81926713 original size:40 final size:40
Alignment explanation
Indices: 81926676--81926807 Score: 171
Period size: 40 Copynumber: 3.3 Consensus size: 40
81926666 TGAGGAATGT
81926676 TATCCGGGAC-TAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGG-CTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
*
81926716 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTGGAATTG
* * * *
81926756 TATCCGGGCTTAAAGACCCGCAGGCTACGAGCTGGTATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
*
81926796 TA-CCGGGTTTAA
1 TATCCGGGCTTAA
81926808 CTTCCCGTAG
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
39 10 0.12
40 71 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
Found at i:81939940 original size:13 final size:13
Alignment explanation
Indices: 81939902--81939933 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
81939892 CCTCTCTCAT
81939902 TCTCTCCT-AAAA
1 TCTCTCCTCAAAA
81939914 TCTCTCCTCAAAA
1 TCTCTCCTCAAAA
81939927 TC-CTCCT
1 TCTCTCCT
81939934 TGAAAATGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.25, C:0.41, G:0.00, T:0.34
Consensus pattern (13 bp):
TCTCTCCTCAAAA
Found at i:81944134 original size:15 final size:15
Alignment explanation
Indices: 81944114--81944142 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
81944104 TCTTCACATT
81944114 TCAACTTAATAGATG
1 TCAACTTAATAGATG
81944129 TCAACTTAATAGAT
1 TCAACTTAATAGAT
81944143 TTCCTCTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.34
Consensus pattern (15 bp):
TCAACTTAATAGATG
Found at i:81948505 original size:40 final size:40
Alignment explanation
Indices: 81948461--81948570 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
81948451 TTCACAATTT
* *
81948461 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
81948501 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
81948541 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
81948571 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:81951921 original size:53 final size:53
Alignment explanation
Indices: 81951841--81951945 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 53
81951831 ATCCTTTTGA
* * * *
81951841 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCC-TTGCCTTATG
1 AACTCACCAATGCCATGCCTCGACATGGTCTTACATGGGA-CCTTTGCCTTATG
* *
81951894 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAT
1 AACTCACCAATGCCATGCCTCGACATGGTCTTACATGGGACCTTTGCCTTAT
81951946 AGTAACTTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.04
53 43 0.96
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (53 bp):
AACTCACCAATGCCATGCCTCGACATGGTCTTACATGGGACCTTTGCCTTATG
Found at i:81954652 original size:46 final size:46
Alignment explanation
Indices: 81954602--81954730 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
81954592 TGGTTGAGCA
*
81954602 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
81954648 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
81954694 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81954731 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:81957672 original size:15 final size:15
Alignment explanation
Indices: 81957633--81957711 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
81957623 GTATCTTGGG
*
81957633 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
81957648 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
81957663 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
81957677 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
81957692 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
81957706 TTTCTT
1 TTTCTT
81957712 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:81957696 original size:29 final size:29
Alignment explanation
Indices: 81957624--81957710 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
81957614 CATAGTATCG
* * * *
81957624 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
81957654 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
81957683 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
81957711 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:81960121 original size:46 final size:46
Alignment explanation
Indices: 81960071--81960246 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
81960061 TGGTTGAGCA
81960071 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81960117 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81960162 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81960210 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81960247 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81960227 original size:93 final size:93
Alignment explanation
Indices: 81960068--81960238 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
81960058 GGATGGTTGA
* *
81960068 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81960133 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81960161 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81960226 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81960239 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81962342 original size:36 final size:36
Alignment explanation
Indices: 81962295--81962367 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
81962285 CAACTTGTCA
81962295 AGTGAATAATCCATACGAAATGGGATAAAATGAGCT
1 AGTGAATAATCCATACGAAATGGGATAAAATGAGCT
81962331 AGTGAATAATCCATACGAAATGGGATAAAATGAGCT
1 AGTGAATAATCCATACGAAATGGGATAAAATGAGCT
81962367 A
1 A
81962368 ACTTCGTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.45, C:0.11, G:0.22, T:0.22
Consensus pattern (36 bp):
AGTGAATAATCCATACGAAATGGGATAAAATGAGCT
Found at i:81967804 original size:55 final size:54
Alignment explanation
Indices: 81967661--81967868 Score: 242
Period size: 55 Copynumber: 3.8 Consensus size: 54
81967651 ATCCTTTTGA
* * *
81967661 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCC-TTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAG
* * *
81967714 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG
* * * * *
81967768 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCTTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG
*
81967822 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
81967869 AAACCCTAAT
Statistics
Matches: 130, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 8 0.06
55 72 0.55
56 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG
Found at i:81967816 original size:108 final size:110
Alignment explanation
Indices: 81967661--81967861 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
81967651 ATCCTTTTGA
* *
81967661 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
81967724 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
81967769 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCTTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
81967834 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
81967862 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.57
109 7 0.08
110 28 0.33
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:81969347 original size:48 final size:50
Alignment explanation
Indices: 81969225--81969354 Score: 151
Period size: 50 Copynumber: 2.6 Consensus size: 50
81969215 ATGGGGTATA
* *
81969225 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTACATATCT
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACCTACATATCT
* **
81969275 ATGTCGATGCCATGTCTTAAACATGGTCTTACACT-GACACCT-C-TATAC-
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAG-CACCTACATAT-CT
* *
81969323 GTGCCGATGCCATGTCCCAGACATGGTCTTAC
1 ATGCCGATGCCATGTCCCAAACATGGTCTTAC
81969355 TGTAACACCC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
48 30 0.44
49 3 0.04
50 35 0.51
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (50 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACCTACATATCT
Found at i:81969363 original size:48 final size:50
Alignment explanation
Indices: 81969225--81969363 Score: 149
Period size: 48 Copynumber: 2.8 Consensus size: 50
81969215 ATGGGGTATA
* * *
81969225 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTACATATCT
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAACACCTACATATCT
* ** *
81969275 ATGTCGATGCCATGTCTTAAACATGGTCTTACACTGACACCT-C-TATAC-
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAACACCTACATAT-CT
* * **
81969323 GTGCCGATGCCATGTCCCAGACATGGTCTTACTGTAACACC
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAACACC
81969364 CCGTACCCGA
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
48 36 0.49
49 2 0.03
50 35 0.48
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (50 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAACACCTACATATCT
Found at i:81970846 original size:39 final size:39
Alignment explanation
Indices: 81970715--81970852 Score: 154
Period size: 39 Copynumber: 3.5 Consensus size: 39
81970705 GGATATAACG
* * * *
81970715 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGGTTATAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGTT-TAGTA
81970755 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAGTA
* * * *
81970794 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGG-TTTAGTA
*
81970833 TCTCGCACGAATGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
81970853 ATCCTAGTCC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
38 9 0.11
39 46 0.54
40 28 0.33
41 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAGTA
Found at i:81970905 original size:40 final size:40
Alignment explanation
Indices: 81970717--81970905 Score: 147
Period size: 40 Copynumber: 4.8 Consensus size: 40
81970707 ATATAACGAC
* ** * *
81970717 TCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGAC-
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACT
* * *
81970757 TCGCACGAATGCCTTCGGGACTTAACCCGG-TTTAGTAACT
1 TCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTAACT
* * *
81970797 T-GCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTATC-
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACT
* * * *
81970835 TCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACT
1 TCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTAACT
*
81970876 TAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TCGCACAAAGCCTTCGGGACTTAGCCCGGA
81970906 CATCATTCGA
Statistics
Matches: 117, Mismatches: 22, Indels: 20
0.74 0.14 0.13
Matches are distributed among these distances:
38 14 0.12
39 37 0.32
40 56 0.48
41 10 0.09
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
TCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTAACT
Found at i:81970994 original size:18 final size:18
Alignment explanation
Indices: 81970971--81971009 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
81970961 ACTTTCATTA
81970971 GCAAAACTCAAACACAAG
1 GCAAAACTCAAACACAAG
81970989 GCAAAACTCAAACACAAG
1 GCAAAACTCAAACACAAG
81971007 GCA
1 GCA
81971010 CTTTTCACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.54, C:0.28, G:0.13, T:0.05
Consensus pattern (18 bp):
GCAAAACTCAAACACAAG
Found at i:81978916 original size:78 final size:82
Alignment explanation
Indices: 81978786--81978969 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 82
81978776 ACGACTCGCT
** *
81978786 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTGACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
81978849 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
81978866 CAAATGCCTTCGGG-CTTAGCCCGGATT-TA-TTACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTGACTCGCACGAATGCCTTCGGATCCTAACCCG
*
81978928 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
81978945 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81978970 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 3 0.03
78 44 0.48
79 28 0.31
80 16 0.18
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTGACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:81978969 original size:40 final size:39
Alignment explanation
Indices: 81978779--81978969 Score: 154
Period size: 40 Copynumber: 4.8 Consensus size: 39
81978769 GGATATAACG
* ** * *
81978779 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
81978819 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
81978859 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTA-TT
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
81978897 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
81978937 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
81978970 CATCATTCGA
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
37 2 0.02
38 14 0.12
39 29 0.24
40 65 0.54
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:81980728 original size:45 final size:44
Alignment explanation
Indices: 81980677--81980936 Score: 213
Period size: 46 Copynumber: 5.7 Consensus size: 44
81980667 GTGCCAATAC
*
81980677 CATGTCCCAGACATGGTCTTACACTAACACATCTTGTAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACATCTTGTAGCTGATG
*
81980722 CATGTCCCAGACATAGTCTTACACT-GACACATCTCGTAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CACATCTTGTAGCTGATG
* * * * * *
81980767 CATGTCCTAGATATGTTTTACACTGGCTTACTTCTCG-AGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC--ACATCTTGTA-GCTGATG
* ** *
81980813 CATGTCCCAGACATGTCTTACACTAGCTC-TCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACATC-T-TGTA-GCTGATG
* * * * *
81980859 CGATGTCCCAAACATGGTCTTACACTGGCTC-TCATAATGTGGCCGATG
1 C-ATGTCCCAGACAT-GTCTTACACTAGCACATC-T--TGTAGCTGATG
81980907 CATGTCCCAGACATGTCTTACACTAGCACA
1 CATGTCCCAGACATGTCTTACACTAGCACA
81980937 CAATATCCCG
Statistics
Matches: 177, Mismatches: 26, Indels: 22
0.79 0.12 0.10
Matches are distributed among these distances:
43 2 0.01
44 12 0.07
45 55 0.31
46 58 0.33
47 24 0.14
48 25 0.14
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCACATCTTGTAGCTGATG
Found at i:81980874 original size:47 final size:45
Alignment explanation
Indices: 81980809--81980933 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 45
81980799 TCTCGAGGCT
*
81980809 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA-T-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGGCC
* *
81980855 GATGCGATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTCATAA-GTGGCC
81980903 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
81980934 ACACAATATC
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
45 2 0.03
46 18 0.26
47 25 0.36
48 24 0.35
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCC
Found at i:81982408 original size:22 final size:22
Alignment explanation
Indices: 81982383--81982463 Score: 69
Period size: 22 Copynumber: 3.6 Consensus size: 22
81982373 TGAGTTGATA
*
81982383 AACATTAAGCTCTATTGAGCTG
1 AACAGTAAGCTCTATTGAGCTG
*
81982405 AACAGTAAACTCT-TTCGAGCTG
1 AACAGTAAGCTCTATT-GAGCTG
*
81982427 AATC-GATAAGCTAC-AATGAGCTG
1 AA-CAG-TAAGCT-CTATTGAGCTG
81982450 AAACAGTAAGCTCT
1 -AACAGTAAGCTCT
81982464 TACGTGCTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 15
0.71 0.06 0.23
Matches are distributed among these distances:
21 2 0.04
22 21 0.45
23 19 0.40
24 5 0.11
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (22 bp):
AACAGTAAGCTCTATTGAGCTG
Found at i:81989799 original size:48 final size:47
Alignment explanation
Indices: 81989743--81990071 Score: 256
Period size: 48 Copynumber: 6.9 Consensus size: 47
81989733 GGTGGATTGT
* * *
81989743 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGT
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATC-AGGC
* * * * * * *
81989791 TGATGCCATGTCCCAGACATGGTCCTACACTAGCTCTCATCTCAATGC
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATC-AGGC
* * * * * **
81989839 CGTTGTCATGTCCCAGACATGGTCTTACACTAG-T-GCATATCAATAC
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATC-AGGC
* * * * * *
81989885 TGATGCCATG-TCTCAGACATGGTCTTACATTGGCTCTCACAACATCGC
1 CGATGCCATGTTC-CAGACATGGTCTTACACTGGCTCACATATCA-GGC
* * *
81989933 CGATGTCATGTTCTAAACATGGTCTTACACTGGCTCTCACAATATC--GC
1 CGATGCCATGTTCCAGACATGGTCTTACACTGG--CTCAC-ATATCAGGC
* *
81989981 CGATGCCATGTTCCA-ACATGGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATC-AGGC
* * *
81990028 CGATGCCATGTCCCAGACATAGTCTTACACTGGCACACATATCA
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATCA
81990072 CATAAATGTC
Statistics
Matches: 225, Mismatches: 44, Indels: 25
0.77 0.15 0.09
Matches are distributed among these distances:
44 5 0.02
45 5 0.02
46 34 0.15
47 36 0.16
48 136 0.60
49 2 0.01
50 4 0.02
51 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATCAGGC
Found at i:81989921 original size:94 final size:94
Alignment explanation
Indices: 81989791--81990061 Score: 270
Period size: 94 Copynumber: 2.9 Consensus size: 94
81989781 ATGTCGAGGT
* * * *
81989791 TGATGCCATGTCCCAGACATGGTCCTACACTAGCTCTCATCTCAAT-GCCGTTGTCATGTCCCAG
1 TGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATCTCAATCGCCGATGTCATGTCCCAG
81989855 ACATGGTCTTACACTAGTGC-ATATCAATA-C
66 ACATGGTCTTACACT-G-GCTATA-CAATACC
* * * *
81989885 TGATGCCATGTCTCAGACATGGTCTTACATTGGCTCTCA-C-AACATCGCCGATGTCATGTTCTA
1 TGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATCTCA-ATCGCCGATGTCATGTCCCA
* *
81989948 AACATGGTCTTACACTGGCTCTCACAATATCGC
65 GACATGGTCTTACACTGGCTAT-ACAATA-C-C
* * * * *
81989981 CGATGCCATGT-TCCA-ACATGGTCTTACACTGGCTCTCATATC-GTGGCCGATGCCATGTCCCA
1 TGATGCCATGTCT-CAGACATGGTCTTACACTGGCTCTCATCTCAATCGCCGATGTCATGTCCCA
*
81990043 GACATAGTCTTACACTGGC
65 GACATGGTCTTACACTGGC
81990062 ACACATATCA
Statistics
Matches: 146, Mismatches: 21, Indels: 19
0.78 0.11 0.10
Matches are distributed among these distances:
92 3 0.02
93 10 0.07
94 65 0.45
95 55 0.38
96 13 0.09
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (94 bp):
TGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATCTCAATCGCCGATGTCATGTCCCAG
ACATGGTCTTACACTGGCTATACAATACC
Found at i:81997643 original size:23 final size:23
Alignment explanation
Indices: 81997617--81997691 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
81997607 TGCCTCTCAC
81997617 AACATCGCCGATGCCATGTTCCA
1 AACATCGCCGATGCCATGTTCCA
* * * **
81997640 AACATGGTC--TTCCACTGGCCTCA
1 AACATCGCCGATGCCA-TGTTC-CA
81997663 CAACATCGCCGATGCCATGTTCCA
1 -AACATCGCCGATGCCATGTTCCA
81997687 AACAT
1 AACAT
81997692 GGTCTTACAC
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 4 0.11
22 3 0.08
23 14 0.38
24 9 0.24
25 3 0.08
26 4 0.11
ACGTcount: A:0.27, C:0.35, G:0.16, T:0.23
Consensus pattern (23 bp):
AACATCGCCGATGCCATGTTCCA
Found at i:81997810 original size:48 final size:48
Alignment explanation
Indices: 81997385--81997801 Score: 391
Period size: 48 Copynumber: 8.8 Consensus size: 48
81997375 AGGGTGAATT
* * * * * *
81997385 GCCGATGCCATGTTCCAAACATGGT-TCTACACTGGTTCACCTGTCGA-G
1 GCCGATGCCATGTCCCAAACATGGTCT-TACACTGGCTCTCATATC-ATC
* * * * * *
81997433 GCCAATGCCATGTCACAGACATGGTCTTACACTAGCTCTCGTCTCAAT-
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC-ATC
* * * *
81997481 ACCGATGCCATGTACCAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCATC
* * * *
81997529 GCCGATGCCATGTCTCATACATGGTCTTACACTAG--CGCATATCAAT-
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC-ATC
* * ** * * *
81997575 GTCGATGCCATGTCCCAGACATGGTCCCACACTGCCTCTCACAACATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATC
* * * *
81997623 GCCGATGCCATGTTCCAAACATGGTCTTCCACTGGC-CTCACAACATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATC
* * *
81997670 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACAACATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATC
* * * *
81997718 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATC
81997766 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
81997802 ACAGATATCA
Statistics
Matches: 308, Mismatches: 51, Indels: 20
0.81 0.13 0.05
Matches are distributed among these distances:
45 2 0.01
46 32 0.10
47 50 0.16
48 222 0.72
49 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATC
Found at i:81997825 original size:95 final size:92
Alignment explanation
Indices: 81997482--81997801 Score: 279
Period size: 95 Copynumber: 3.4 Consensus size: 92
81997472 CGTCTCAATA
* * ** *
81997482 CCGATGCCATGTACCAAACATGGTCTTACACTGGCTCTCATA-ATGTGGCCGATGCCATG-TCTC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGC-CACA-ACA--TCACCAATGCCATGTTC-C
* * * * *
81997545 ATACATGGTCTTACACTAG-CGCATATCAAT-G
61 AAACATGGTCTTACACTGGCCTCACAAC-ATCG
* * ** * * *
81997576 TCGATGCCATGTCCCAGACATGGTCCCACACTGCCTCTCACAACATCGCCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTG--GC-CACAACATCACCAATGCCATGTTCCAA
*
81997641 ACATGGTCTTCCACTGGCCTCACAACATCG
63 ACATGGTCTTACACTGGCCTCACAACATCG
* *
81997671 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACAACATCACCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGG--C-CACAACATCACCAATGCCATGTTCCAA
* * * *
81997736 ACATGGTCTTACACTGGCTCTCATATCGTGG
63 ACATGGTCTTACACTGGC-CTCACAACATCG
81997767 CCGATGCCATGTCCCAAACATGGTCTTACACTGGC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGC
81997802 ACAGATATCA
Statistics
Matches: 190, Mismatches: 27, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
94 61 0.32
95 82 0.43
96 47 0.25
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (92 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCCACAACATCACCAATGCCATGTTCCAAACA
TGGTCTTACACTGGCCTCACAACATCG
Found at i:82006553 original size:40 final size:40
Alignment explanation
Indices: 82006387--82006554 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
82006377 CAATTGAATG
* * * *
82006387 ATATCCGGGTTAAGACCCAAAGGCAATT-GTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTG-GTT
* * *
82006428 -TATCAGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
* * * *
82006467 ATATCCAGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
*
82006507 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
82006547 ATATCCGG
1 ATATCCGG
82006555 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 5 0.05
40 103 0.95
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
Found at i:82011008 original size:13 final size:12
Alignment explanation
Indices: 82010981--82011049 Score: 52
Period size: 11 Copynumber: 5.3 Consensus size: 12
82010971 TAAGTGCTCA
82010981 TGTTTCTCTCT-
1 TGTTTCTCTCTC
82010992 TGTTTCTCTCTAC
1 TGTTTCTCTCT-C
*
82011005 TGTTGTAGTCTTGCTC
1 TGTT-T-CTC-T-CTC
82011021 ATGTTTCTCTCT-
1 -TGTTTCTCTCTC
82011033 TGTTTCTCTCTAC
1 TGTTTCTCTCT-C
82011046 TGTT
1 TGTT
82011050 GTAGTCTTTC
Statistics
Matches: 47, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
11 22 0.47
13 10 0.21
14 2 0.04
15 4 0.09
16 3 0.06
17 6 0.13
ACGTcount: A:0.06, C:0.25, G:0.13, T:0.57
Consensus pattern (12 bp):
TGTTTCTCTCTC
Found at i:82011021 original size:41 final size:41
Alignment explanation
Indices: 82010975--82011057 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
82010965 AATCGGTAAG
82010975 TGCTCATGTTTCTCTCTTGTTTCTCTCTACTGTTGTAGTCT
1 TGCTCATGTTTCTCTCTTGTTTCTCTCTACTGTTGTAGTCT
82011016 TGCTCATGTTTCTCTCTTGTTTCTCTCTACTGTTGTAGTCT
1 TGCTCATGTTTCTCTCTTGTTTCTCTCTACTGTTGTAGTCT
82011057 T
1 T
82011058 TCTTCTAACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.07, C:0.24, G:0.14, T:0.54
Consensus pattern (41 bp):
TGCTCATGTTTCTCTCTTGTTTCTCTCTACTGTTGTAGTCT
Found at i:82015829 original size:92 final size:92
Alignment explanation
Indices: 82015718--82015888 Score: 297
Period size: 92 Copynumber: 1.9 Consensus size: 92
82015708 GCCCATAAGT
* *
82015718 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82015783 CGAGCTCGGATGCCTAGTTACATCCTC
66 CGAGCTCGGATGCCTAGTTACATCCTC
* *
82015810 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
82015875 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
82015889 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCCTC
Found at i:82015884 original size:46 final size:46
Alignment explanation
Indices: 82015710--82015884 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
82015700 TGTAACCCGC
* * *
82015710 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
82015756 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
82015806 CC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
82015848 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82015885 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 2 0.02
42 6 0.05
43 2 0.02
46 92 0.83
49 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:82015903 original size:46 final size:44
Alignment explanation
Indices: 82015715--82015903 Score: 125
Period size: 46 Copynumber: 4.1 Consensus size: 44
82015705 CCCGCCCATA
* * ** ** **
82015715 AGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
82015760 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATCCT
* * *
82015809 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
82015852 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
82015899 AGTGA
1 AGTGA
82015904 CATGTCACTT
Statistics
Matches: 113, Mismatches: 16, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
42 4 0.04
43 1 0.01
44 4 0.04
46 91 0.81
47 1 0.01
48 7 0.06
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:82021375 original size:46 final size:46
Alignment explanation
Indices: 82021200--82021375 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
82021190 TGTAACCCGC
*** * * * *
82021200 CCATAAGTGAACTATAACTCAAATCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
82021246 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* ** *
82021292 ACATCCGTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
82021339 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82021376 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 65 0.61
47 33 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:82021394 original size:46 final size:44
Alignment explanation
Indices: 82021251--82021394 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 44
82021241 CGCATCCATA
* *
82021251 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCC-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATCCT
* *
82021298 -GTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
*
82021343 AAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
82021390 AGTGA
1 AGTGA
82021395 CATGTCACTT
Statistics
Matches: 79, Mismatches: 7, Indels: 23
0.72 0.06 0.21
Matches are distributed among these distances:
43 4 0.05
44 4 0.05
46 34 0.43
47 30 0.38
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:82028012 original size:46 final size:46
Alignment explanation
Indices: 82027945--82028119 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
82027935 TGTAACCCGC
82027945 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGGCGTTCGCAT
* *
82027991 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
82028041 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGAAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
82028084 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
82028120 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:82028064 original size:93 final size:93
Alignment explanation
Indices: 82027952--82028123 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
82027942 CGCCCATAAG
* * *
82027952 CGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTC
82028016 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
82028045 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
82028110 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
82028124 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82036443 original size:43 final size:43
Alignment explanation
Indices: 82036390--82036495 Score: 108
Period size: 43 Copynumber: 2.4 Consensus size: 43
82036380 AAAACTCCAC
82036390 AAAAGATCATGACTTTTAGCAACGTTTGTT-GGAAAAGCGCCGCT
1 AAAAG-TCATGACTTTTAGCAACGTTT-TTGGGAAAAGCGCCGCT
*** ** *
82036434 AAAAGTCATGGA-TTTTAGCGGTGTTTTTGGGGGAAGCGCTGCT
1 AAAAGTCAT-GACTTTTAGCAACGTTTTTGGGAAAAGCGCCGCT
*
82036477 AAAAGTCATGGCTTTTAGC
1 AAAAGTCATGACTTTTAGC
82036496 GGCATTTGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
42 3 0.06
43 42 0.81
44 7 0.13
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (43 bp):
AAAAGTCATGACTTTTAGCAACGTTTTTGGGAAAAGCGCCGCT
Found at i:82036496 original size:43 final size:43
Alignment explanation
Indices: 82036424--82036569 Score: 229
Period size: 43 Copynumber: 3.4 Consensus size: 43
82036414 TTTGTTGGAA
* * ** *
82036424 AAGCGCCGCTAAAAGTCATGGATTTTAGCGGTGTTTTTGGGGG
1 AAGCGCTGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGGGG
82036467 AAGCGCTGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGGGG
1 AAGCGCTGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGGGG
* *
82036510 AAGCACTGGTAAAAGTCATGGCTTTTAGCGGCATTTGTGGGGG
1 AAGCGCTGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGGGG
82036553 AAGCGCTGCTAAAAGTC
1 AAGCGCTGCTAAAAGTC
82036570 TTTTGTTACA
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 94 1.00
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.27
Consensus pattern (43 bp):
AAGCGCTGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGGGG
Found at i:82037015 original size:21 final size:21
Alignment explanation
Indices: 82036973--82037015 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
82036963 ACTACCTCTA
*
82036973 CCTCCCTCGCTGCTGCCGCTG
1 CCTCCCTCGCTGCTGCAGCTG
*
82036994 CCTCCCTCGCTGCTGCATCTG
1 CCTCCCTCGCTGCTGCAGCTG
82037015 C
1 C
82037016 TCTAAGTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.02, C:0.51, G:0.21, T:0.26
Consensus pattern (21 bp):
CCTCCCTCGCTGCTGCAGCTG
Found at i:82045864 original size:48 final size:48
Alignment explanation
Indices: 82045802--82045986 Score: 325
Period size: 48 Copynumber: 3.9 Consensus size: 48
82045792 TATATATGTG
*
82045802 TGTGGTAAAACCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
82045850 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
82045898 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
82045946 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
82045987 GTGTGTATAT
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 129 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:82046180 original size:37 final size:37
Alignment explanation
Indices: 82046130--82046229 Score: 182
Period size: 37 Copynumber: 2.7 Consensus size: 37
82046120 AATATATTCT
82046130 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
82046167 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
82046204 GGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
82046230 GGACTATTCG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:82056481 original size:43 final size:42
Alignment explanation
Indices: 82056392--82056531 Score: 124
Period size: 43 Copynumber: 3.3 Consensus size: 42
82056382 TGTGATTACA
82056392 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATT-AGATTATG
*
82056435 TGTAAGACCAAGTCTGGGACATTGGCATCAT-TAATT-GATT-TCG
1 TGTAAGACCATGTCTGGGACATTGGCAT--TGT-ATTAGATTAT-G
* * * * * * **
82056478 TGTAAAACCCTGTCTAGGACAGTGGCATTGATAGTAGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTAGATTATG
82056521 TGTAAGACCAT
1 TGTAAGACCAT
82056532 ATATGGAATA
Statistics
Matches: 77, Mismatches: 12, Indels: 16
0.73 0.11 0.15
Matches are distributed among these distances:
41 1 0.01
42 3 0.04
43 68 0.88
44 1 0.01
45 4 0.05
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTAGATTATG
Found at i:82058728 original size:22 final size:23
Alignment explanation
Indices: 82058684--82058728 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
82058674 ACTTGTACAA
* * *
82058684 CTTTTTTTTATATTTTCGTAATT
1 CTTTTTTTAATAGTTCCGTAATT
82058707 CTTTTTTTAATAGTTCCG-AATT
1 CTTTTTTTAATAGTTCCGTAATT
82058729 TTTGCACTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.20, C:0.11, G:0.07, T:0.62
Consensus pattern (23 bp):
CTTTTTTTAATAGTTCCGTAATT
Found at i:82058781 original size:13 final size:14
Alignment explanation
Indices: 82058753--82058786 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
82058743 ATATATTCTC
82058753 TTTTTTTTCACGAAT
1 TTTTTTTTCAC-AAT
82058768 TTTTTTTTCA-AAT
1 TTTTTTTTCACAAT
82058781 TTTTTT
1 TTTTTT
82058787 AGCAAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.47
15 10 0.53
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (14 bp):
TTTTTTTTCACAAT
Found at i:82060222 original size:20 final size:20
Alignment explanation
Indices: 82060175--82060247 Score: 58
Period size: 20 Copynumber: 3.7 Consensus size: 20
82060165 GTGTAATCAG
* * *
82060175 AGGCACCGTAGTGCGAA-AG
1 AGGCACCGAAGTGCAAACAA
* * *
82060194 AGACACCGAAGTGTATACAA
1 AGGCACCGAAGTGCAAACAA
* * *
82060214 AGGCACCGAAATGCAAATAG
1 AGGCACCGAAGTGCAAACAA
82060234 AGGCACCGAAGTGC
1 AGGCACCGAAGTGC
82060248 TACCCTATAC
Statistics
Matches: 40, Mismatches: 13, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
19 12 0.30
20 28 0.70
ACGTcount: A:0.38, C:0.22, G:0.29, T:0.11
Consensus pattern (20 bp):
AGGCACCGAAGTGCAAACAA
Found at i:82066521 original size:40 final size:40
Alignment explanation
Indices: 82066462--82066669 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
82066452 CAATTGAATG
* * * *
82066462 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
82066502 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
82066542 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
82066582 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
82066622 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
82066662 ATATCCGG
1 ATATCCGG
82066670 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:82066600 original size:80 final size:80
Alignment explanation
Indices: 82066464--82066669 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
82066454 ATTGAATGAT
* * ** * * *
82066464 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
82066528 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
82066544 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
82066609 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
82066624 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
82066670 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:82074558 original size:40 final size:40
Alignment explanation
Indices: 82074499--82074706 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
82074489 CAATTGAATG
* * * *
82074499 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
82074539 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
82074579 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
82074619 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
82074659 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
82074699 ATATCCGG
1 ATATCCGG
82074707 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:82074637 original size:80 final size:80
Alignment explanation
Indices: 82074501--82074706 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
82074491 ATTGAATGAT
* * ** * * *
82074501 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
82074565 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
82074581 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
82074646 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
82074661 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
82074707 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:82077827 original size:40 final size:39
Alignment explanation
Indices: 82077782--82077989 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
82077772 CGGAATACAA
*
82077782 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82077822 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82077862 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
82077902 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
82077942 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
82077982 CCGGATAT
1 CCGGATAT
82077990 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82077922 original size:80 final size:80
Alignment explanation
Indices: 82077782--82077988 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
82077772 CGGAATACAA
* * *
82077782 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
82077846 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
82077862 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
82077926 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
82077942 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
82077989 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:82091860 original size:40 final size:40
Alignment explanation
Indices: 82091801--82092008 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
82091791 CAATTGAATG
* * * *
82091801 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
82091841 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
82091881 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
82091921 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
82091961 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
82092001 ATATCCGG
1 ATATCCGG
82092009 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:82091939 original size:80 final size:80
Alignment explanation
Indices: 82091803--82092008 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
82091793 ATTGAATGAT
* * ** * * *
82091803 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
82091867 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
82091883 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
82091948 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
82091963 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
82092009 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Done.