Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 271 of 335
Found at i:82096547 original size:46 final size:46
Alignment explanation
Indices: 82096372--82096547 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
82096362 TGTAACCTGC
* ** * * *
82096372 CCATAAGCGAACTAAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82096418 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
82096468 --TTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
82096511 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82096548 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 62 0.57
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82096566 original size:46 final size:46
Alignment explanation
Indices: 82096423--82096566 Score: 131
Period size: 46 Copynumber: 3.1 Consensus size: 46
82096413 CGCATCCATA
* *
82096423 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-TTC-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATATCCT
* *
82096471 A-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC----ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATATCC-T
82096515 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
82096562 AGTGA
1 AGTGA
82096567 CATGTCACTT
Statistics
Matches: 79, Mismatches: 6, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
42 2 0.03
44 4 0.05
45 1 0.01
46 34 0.43
47 30 0.38
48 5 0.06
49 3 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
Found at i:82104830 original size:16 final size:16
Alignment explanation
Indices: 82104811--82104847 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
82104801 TGTGAGTTCT
82104811 TCAGTCTGCAAGCTCA
1 TCAGTCTGCAAGCTCA
* *
82104827 TCAGCCTGTAAGCTCA
1 TCAGTCTGCAAGCTCA
82104843 TCAGT
1 TCAGT
82104848 TGCCTTAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (16 bp):
TCAGTCTGCAAGCTCA
Found at i:82105429 original size:13 final size:13
Alignment explanation
Indices: 82105411--82105436 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82105401 TAAACTCTAC
82105411 TTTCAAGTTATGT
1 TTTCAAGTTATGT
82105424 TTTCAAGTTATGT
1 TTTCAAGTTATGT
82105437 ATTACACGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTCAAGTTATGT
Found at i:82105490 original size:13 final size:13
Alignment explanation
Indices: 82105461--82105511 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
82105451 TATGTGAACC
*
82105461 TATG-TTTTAGAG
1 TATGTTTTTAAAG
82105473 ATATGTTTTTAAAG
1 -TATGTTTTTAAAG
*
82105487 TATGATTTTATAAAC
1 TATG-TTTT-TAAAG
82105502 TATGTTTTTA
1 TATGTTTTTA
82105512 CGAGCTTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 10 0.30
14 15 0.45
15 8 0.24
ACGTcount: A:0.31, C:0.02, G:0.14, T:0.53
Consensus pattern (13 bp):
TATGTTTTTAAAG
Found at i:82105511 original size:15 final size:14
Alignment explanation
Indices: 82105460--82105509 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
82105450 CTATGTGAAC
* *
82105460 CTATGTTTTAGAGA
1 CTATGTTTTATAAA
82105474 -TATGTTTT-TAAA
1 CTATGTTTTATAAA
*
82105486 GTATGATTTTATAAA
1 CTATG-TTTTATAAA
82105501 CTATGTTTT
1 CTATGTTTT
82105510 TACGAGCTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 2 0.07
13 12 0.40
14 8 0.27
15 8 0.27
ACGTcount: A:0.30, C:0.04, G:0.14, T:0.52
Consensus pattern (14 bp):
CTATGTTTTATAAA
Found at i:82107654 original size:26 final size:27
Alignment explanation
Indices: 82107610--82107668 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
82107600 AAATGGTAAA
* *
82107610 ATGAAATGTTTAGAAG-AAATTGTTAT
1 ATGAAATGTTTAGAAGAAAATAGATAT
** *
82107636 ATGAAATGTTTTTATGAAAATAGATAT
1 ATGAAATGTTTAGAAGAAAATAGATAT
82107663 ATGAAA
1 ATGAAA
82107669 CTGATATATG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (27 bp):
ATGAAATGTTTAGAAGAAAATAGATAT
Found at i:82108939 original size:17 final size:17
Alignment explanation
Indices: 82108917--82108951 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
82108907 AAGAAGTATG
82108917 AAATGCTAAGTAGTTAC
1 AAATGCTAAGTAGTTAC
82108934 AAATGCTAAGTAGTTAC
1 AAATGCTAAGTAGTTAC
82108951 A
1 A
82108952 CTTTGATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (17 bp):
AAATGCTAAGTAGTTAC
Found at i:82113040 original size:48 final size:49
Alignment explanation
Indices: 82112988--82113105 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 49
82112978 TATCCCAAGT
*
82112988 ATGGTCTTAC-TCGGGAT-TAC-AACTTGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACAT-GGGATCT-CTAACTTGATGCCAATGCCATGTCCCAAAC
** **
82113036 ATGGTCTTACATGGGATCTCTTATGTTGATGCCAATGTTATGTCCCAAAC
1 ATGGTCTTACATGGGATCTC-TAACTTGATGCCAATGCCATGTCCCAAAC
82113086 ATGGTCTTACATGGGATCTC
1 ATGGTCTTACATGGGATCTC
82113106 ATATCAACGC
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
48 16 0.26
49 2 0.03
50 43 0.70
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (49 bp):
ATGGTCTTACATGGGATCTCTAACTTGATGCCAATGCCATGTCCCAAAC
Found at i:82113080 original size:50 final size:50
Alignment explanation
Indices: 82113011--82113105 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
82113001 GGATTACAAC
*
82113011 TTGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTTATG
1 TTGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTCTTATG
**
82113061 TTGATGCCAATGTTATGTCCCAAACATGGTCTTACATGGGATCTC
1 TTGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTC
82113106 ATATCAACGC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (50 bp):
TTGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTCTTATG
Found at i:82115984 original size:40 final size:39
Alignment explanation
Indices: 82115918--82116068 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
82115908 AAATTGAATG
* * *
82115918 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
82115957 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
82115997 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
82116037 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
82116069 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:82116082 original size:40 final size:39
Alignment explanation
Indices: 82115955--82116084 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
82115945 ATGCTGGAAA
* *
82115955 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
82115995 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
82116035 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
82116075 TTATATCCGG
1 TTATATCCGG
82116085 TAGGAATGGT
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:82117649 original size:46 final size:44
Alignment explanation
Indices: 82117594--82117864 Score: 194
Period size: 47 Copynumber: 5.8 Consensus size: 44
82117584 ATTCGTGTGT
* *
82117594 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATGATGA
82117640 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGA-GA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-TGATGA
* * *
82117685 GGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TGGAGGC
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-GATGA
* *
82117732 GTAAGCCAGTGTAAGACATGTCTAGGACATGCATCCGCTACGA-GATGA
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC--C-ATGATGA
* * * *
82117780 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA-GATA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATGATG--A
* *
82117826 TGAGCCAGTGTAAGACCGTGTCTAGGACATGACATCGGC
1 -GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGC
82117865 ACCTTACCCT
Statistics
Matches: 183, Mismatches: 19, Indels: 44
0.74 0.08 0.18
Matches are distributed among these distances:
44 1 0.01
45 8 0.04
46 72 0.39
47 73 0.40
48 29 0.16
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATGATGA
Found at i:82117848 original size:140 final size:141
Alignment explanation
Indices: 82117599--82117864 Score: 362
Period size: 140 Copynumber: 1.9 Consensus size: 141
82117589 TGTGTGAGCT
* * *
82117599 AGTGTAAGACATGTCTGGGACATGCATCGGTCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCGCTCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
82117664 GACATGGCATCGGCATTGAGAGGAGGGCTAGTGTAAGACATGTCTGGGACATG-CATCGGCCTGG
66 GACATGGCATCGACATTGAGAGGAGAGCCAGTGTAAGACATGTCTAGGACATGACATCGGCCTGG
82117728 AGGCGTAAGCC
131 AGGCGTAAGCC
* *
82117739 AGTGTAAGACATGTCTAGGACATGCATCCGCT-ACGA-GATGATAGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTAGGACATGCAT-CGCTCAC-ATGATGAGAGCCAGTGTAAGACCATGTCT
* *
82117802 GGGACATGGCATCGAC-TTGAGA-TATGAGCCAGTGTAAGACCGTGTCTAGGACATGACATCGGC
64 GGGACATGGCATCGACATTGAGAGGA-GAGCCAGTGTAAGA-CATGTCTAGGACATGACATCGGC
82117865 ACCTTACCCT
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 18 0.16
140 80 0.73
141 11 0.10
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (141 bp):
AGTGTAAGACATGTCTAGGACATGCATCGCTCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGAGGAGAGCCAGTGTAAGACATGTCTAGGACATGACATCGGCCTGG
AGGCGTAAGCC
Found at i:82129979 original size:27 final size:26
Alignment explanation
Indices: 82129931--82129990 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
82129921 GCGAAGCTGC
*
82129931 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
82129958 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
82129984 CATATAT
1 CAGATAT
82129991 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:82130830 original size:54 final size:54
Alignment explanation
Indices: 82130761--82130869 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
82130751 ATGGTAACTT
*
82130761 TACCCCACAACGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTC
1 TACCCCACAACGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTC
* * * *
82130815 TACCCTACAAGGGTATTTCAGTAATTCTATCCTACAGGGGTATTTCGGTATTTC
1 TACCCCACAACGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTC
82130869 T
1 T
82130870 TGTAATATCC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
TACCCCACAACGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTC
Found at i:82130848 original size:27 final size:27
Alignment explanation
Indices: 82130753--82130869 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 27
82130743 AGGGCAAAAT
* * *
82130753 GGTAACTT-TACCCCACAACGGTATCTC
1 GGTAA-TTCTACCCTACAAGGGTATTTC
*
82130780 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
82130807 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
82130834 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
82130861 GGTATTTCT
1 GGTAATTCT
82130870 TGTAATATCC
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.03
27 75 0.97
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:82132212 original size:46 final size:45
Alignment explanation
Indices: 82132162--82132333 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
82132152 TGGTTGAGCA
82132162 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
82132208 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
82132254 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
82132300 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82132334 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:82132316 original size:92 final size:92
Alignment explanation
Indices: 82132159--82132328 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
82132149 GGATGGTTGA
* *
82132159 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82132224 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
82132251 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82132316 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82132329 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:82132595 original size:19 final size:20
Alignment explanation
Indices: 82132558--82132595 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
82132548 ATAAGGTGGT
82132558 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
82132578 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
82132596 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:82137124 original size:26 final size:26
Alignment explanation
Indices: 82137080--82137179 Score: 112
Period size: 27 Copynumber: 3.8 Consensus size: 26
82137070 TACCCTAAAA
* * * *
82137080 GGGTATTTTGGTAATTCTATCCGACAG
1 GGGTATTTCGATAATTCTA-CCTATAG
*
82137107 GGGTATTTCGGTAA-TCTACCTTATAG
1 GGGTATTTCGATAATTCTACC-TATAG
*
82137133 GGGTATTTCAATAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTA-CCTATAG
82137160 GGGTATTTCGATAATTCTAC
1 GGGTATTTCGATAATTCTAC
82137180 AACTTATCCA
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
25 2 0.03
26 20 0.31
27 40 0.62
28 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (26 bp):
GGGTATTTCGATAATTCTACCTATAG
Found at i:82145182 original size:13 final size:13
Alignment explanation
Indices: 82145164--82145206 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
82145154 ATAAACCCTA
82145164 TTTTCAAGTTATG
1 TTTTCAAGTTATG
*
82145177 TTTTCAAGTCATG
1 TTTTCAAGTTATG
82145190 TTTTCAAGTTATG
1 TTTTCAAGTTATG
82145203 TTTT
1 TTTT
82145207 ATACGTGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.21, C:0.09, G:0.14, T:0.56
Consensus pattern (13 bp):
TTTTCAAGTTATG
Found at i:82147549 original size:39 final size:39
Alignment explanation
Indices: 82147426--82147620 Score: 202
Period size: 39 Copynumber: 5.1 Consensus size: 39
82147416 AACTTGAAAC
** *
82147426 TAATTACCAGCACA-AGCCTGCTGGAATTTAA-ACC-GATA
1 TAATT-CCAGCACATAGCCTGC-GGACCTTAAGTCCGGATA
* * * * * *
82147464 TAATACCAGCTCGA-AGCCTGTGGA-CTTTAGCCCGGACA
1 TAATTCCAGCAC-ATAGCCTGCGGACCTTAAGTCCGGATA
* * *
82147502 TATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTA
1 TAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
*
82147541 TAATTCCAGTACATAGCCTGCGGACCTTAAGTCCGGATA
1 TAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
*
82147580 TAATTCCAGCATATAGCCTGCGGACCTTAAGTCCGGATA
1 TAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
82147619 TA
1 TA
82147621 CTACATCACT
Statistics
Matches: 130, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
36 3 0.02
37 11 0.08
38 32 0.25
39 84 0.65
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
TAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
Found at i:82151942 original size:80 final size:80
Alignment explanation
Indices: 82151858--82152006 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82151848 TATGGTAACC
* * * *
82151858 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82151922 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82151938 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82152003 CCGG
66 CCGG
82152007 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82151948 original size:40 final size:38
Alignment explanation
Indices: 82151899--82152006 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82151889 ATCACGATTT
*
82151899 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82151939 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82151979 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82152007 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82160017 original size:80 final size:80
Alignment explanation
Indices: 82159933--82160081 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82159923 TATGGTAACC
* * * *
82159933 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82159997 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82160013 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82160078 CCGG
66 CCGG
82160082 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82160023 original size:40 final size:38
Alignment explanation
Indices: 82159974--82160081 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82159964 ATCACGATTT
*
82159974 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82160014 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82160054 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82160082 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82161958 original size:40 final size:40
Alignment explanation
Indices: 82161908--82162132 Score: 346
Period size: 40 Copynumber: 5.6 Consensus size: 40
82161898 ACTACTTGCT
* * *
82161908 CAAATGCCTTCGAGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
82161948 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
82161988 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
82162028 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
82162068 CAAATGCCTTC-AGAGCTTAGCCCAGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATA-TAGTAACTCGCA
82162108 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
82162133 TTATCATCCG
Statistics
Matches: 171, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 3 0.02
40 166 0.97
41 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:82169945 original size:40 final size:40
Alignment explanation
Indices: 82169900--82170124 Score: 346
Period size: 40 Copynumber: 5.6 Consensus size: 40
82169890 ACTACTTGCT
* *
82169900 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
82169940 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
82169980 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
82170020 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
82170060 CAAATGCCTT-TGGAGCTTAGCTCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATA-TAGTAACTCGCA
*
82170100 CAAATTCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
82170125 TTATCATCCG
Statistics
Matches: 171, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 4 0.02
40 164 0.96
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:82179152 original size:12 final size:12
Alignment explanation
Indices: 82179092--82179150 Score: 68
Period size: 12 Copynumber: 5.1 Consensus size: 12
82179082 TTTTTTTCTC
*
82179092 TCAAACTCTTTT
1 TCAATCTCTTTT
*
82179104 TCATTCTCTTTT
1 TCAATCTCTTTT
*
82179116 TCAATTTCTTTT
1 TCAATCTCTTTT
*
82179128 TCAATCTCATTT
1 TCAATCTCTTTT
82179140 TC-A-CTCTTTT
1 TCAATCTCTTTT
82179150 T
1 T
82179151 TTGTTCTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
10 7 0.17
11 1 0.03
12 32 0.80
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (12 bp):
TCAATCTCTTTT
Found at i:82179262 original size:15 final size:15
Alignment explanation
Indices: 82179250--82179291 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
82179240 TCTCTTTTAT
82179250 TTCTTTTTCTTTTTC
1 TTCTTTTTCTTTTTC
*
82179265 TTCTTTTGC-TTTTC
1 TTCTTTTTCTTTTTC
*
82179279 -TCGTTTTCTTTTT
1 TTCTTTTTCTTTTT
82179292 ACAAGAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 6 0.26
14 9 0.39
15 8 0.35
ACGTcount: A:0.00, C:0.19, G:0.05, T:0.76
Consensus pattern (15 bp):
TTCTTTTTCTTTTTC
Found at i:82180199 original size:11 final size:11
Alignment explanation
Indices: 82180183--82180212 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
82180173 TTTAACACAC
82180183 TTTTTTTTGAA
1 TTTTTTTTGAA
*
82180194 TTTTTTTCGAA
1 TTTTTTTTGAA
82180205 TTTTTTTT
1 TTTTTTTT
82180213 TGTTTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.07, T:0.77
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:82186741 original size:16 final size:16
Alignment explanation
Indices: 82186720--82186805 Score: 127
Period size: 16 Copynumber: 5.4 Consensus size: 16
82186710 TTTGGTTCAA
* *
82186720 TGTAATGGAATAGGGC
1 TGTAATTGAATAGAGC
*
82186736 TGTAATTGAATATAGC
1 TGTAATTGAATAGAGC
82186752 TGTAATTGAATAGAGC
1 TGTAATTGAATAGAGC
82186768 TGTAATTGAATAGAGC
1 TGTAATTGAATAGAGC
* *
82186784 TGTAATGGAATAAAGC
1 TGTAATTGAATAGAGC
82186800 TGTAAT
1 TGTAAT
82186806 CAATAATTCA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 64 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (16 bp):
TGTAATTGAATAGAGC
Found at i:82186851 original size:47 final size:44
Alignment explanation
Indices: 82186787--82186880 Score: 109
Period size: 47 Copynumber: 2.1 Consensus size: 44
82186777 ATAGAGCTGT
82186787 AATGGAATAAAGCTGTAATCAATAATTCAACAGT-TTTGGTTGAATGG
1 AATGGAATAAAGCTGTAAT-AAT-ATTC--CAGTGTTTGGTTGAATGG
* * **
82186834 AATGGAATAGAGTTGTAATAATATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAAAGCTGTAATAATATTCCAGTGTTTGGTTGAATGG
82186878 AAT
1 AAT
82186881 AGATGTTGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
43 2 0.05
44 16 0.38
45 4 0.10
46 3 0.07
47 17 0.40
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.36
Consensus pattern (44 bp):
AATGGAATAAAGCTGTAATAATATTCCAGTGTTTGGTTGAATGG
Found at i:82187008 original size:26 final size:25
Alignment explanation
Indices: 82186961--82187011 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
82186951 ATGATTATTG
*
82186961 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
*
82186986 TTATTGTTAAATATATTTTAATAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
82187012 ATAAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:82188411 original size:28 final size:28
Alignment explanation
Indices: 82188379--82188436 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
82188369 TCGTTTAACC
82188379 TAAAACTGAATTAACCCGAACATATACA
1 TAAAACTGAATTAACCCGAACATATACA
82188407 TAAAACTGAATTAACCCGAACATATACA
1 TAAAACTGAATTAACCCGAACATATACA
82188435 TA
1 TA
82188437 CATGTAGACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.50, C:0.21, G:0.07, T:0.22
Consensus pattern (28 bp):
TAAAACTGAATTAACCCGAACATATACA
Found at i:82190348 original size:13 final size:13
Alignment explanation
Indices: 82190330--82190354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82190320 TTTAGATTTT
82190330 TAAATTTTTTATA
1 TAAATTTTTTATA
82190343 TAAATTTTTTAT
1 TAAATTTTTTAT
82190355 TTTGAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TAAATTTTTTATA
Found at i:82190766 original size:18 final size:18
Alignment explanation
Indices: 82190743--82190780 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
82190733 AATATATACT
82190743 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
82190761 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
82190779 AA
1 AA
82190781 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:82190773 original size:13 final size:13
Alignment explanation
Indices: 82190757--82190781 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82190747 CAAGTACCCA
82190757 ACCCAACCCAATT
1 ACCCAACCCAATT
82190770 ACCCAACCCAAT
1 ACCCAACCCAAT
82190782 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:82190847 original size:7 final size:6
Alignment explanation
Indices: 82190806--82190846 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
82190796 ATAATTTAAT
*
82190806 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
82190847 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:82190847 original size:20 final size:20
Alignment explanation
Indices: 82190809--82190848 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
82190799 ATTTAATAAA
**
82190809 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
82190829 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
82190849 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:82190896 original size:9 final size:9
Alignment explanation
Indices: 82190875--82190908 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
82190865 ATAATTCAGT
*
82190875 TAATTCGGT
1 TAATTCGGG
*
82190884 TAATTTGGG
1 TAATTCGGG
82190893 TAATTCGGG
1 TAATTCGGG
82190902 TAATTCG
1 TAATTCG
82190909 ATTGATTCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.09, G:0.26, T:0.41
Consensus pattern (9 bp):
TAATTCGGG
Found at i:82190896 original size:18 final size:18
Alignment explanation
Indices: 82190875--82190925 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
82190865 ATAATTCAGT
*
82190875 TAATTCGGTTAATTTGGG
1 TAATTCGGTTAATTTGAG
* * *
82190893 TAATTCGGGTAATTCGAT
1 TAATTCGGTTAATTTGAG
*
82190911 TGATTCGGTTAATTT
1 TAATTCGGTTAATTT
82190926 TATACTTATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.45
Consensus pattern (18 bp):
TAATTCGGTTAATTTGAG
Found at i:82191715 original size:27 final size:26
Alignment explanation
Indices: 82191676--82191738 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 26
82191666 GAGTTTCATG
* *
82191676 TATATAATTACATAAAATTAAAGTT-
1 TATATAATTACATAAAATCAAAATTA
*
82191701 TATATAATTGCACATTAAATCAAAATTCA
1 TATATAATT--ACATAAAATCAAAATT-A
82191730 TATATAATT
1 TATATAATT
82191739 TTAAAATTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 9 0.29
27 13 0.42
29 9 0.29
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (26 bp):
TATATAATTACATAAAATCAAAATTA
Found at i:82195784 original size:29 final size:29
Alignment explanation
Indices: 82195719--82195785 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
82195709 TTAGAATATT
* *
82195719 ATAAAATAA-TTATTAAAAGTTGTAAAAAA
1 ATAAAA-AAGTTATTAAAAATAGTAAAAAA
**
82195748 ATGTAAAAGTTATTAAAAATAGTAAAAAA
1 ATAAAAAAGTTATTAAAAATAGTAAAAAA
82195777 ATAAAAAAG
1 ATAAAAAAG
82195786 AAGATAATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
28 2 0.06
29 29 0.94
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (29 bp):
ATAAAAAAGTTATTAAAAATAGTAAAAAA
Found at i:82195887 original size:10 final size:11
Alignment explanation
Indices: 82195822--82195887 Score: 54
Period size: 9 Copynumber: 6.5 Consensus size: 11
82195812 TTAAAAGTTC
*
82195822 TAAAAATAATA
1 TAAAAATTATA
*
82195833 TATAAA--ATA
1 TAAAAATTATA
82195842 TAAAAA-TAT-
1 TAAAAATTATA
82195851 TAAAAATT-TA
1 TAAAAATTATA
82195861 TAAAAATTATAA
1 TAAAAATTAT-A
*
82195873 AAAAAATTAT-
1 TAAAAATTATA
82195883 TAAAA
1 TAAAA
82195888 TAGTCTATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 15 0.33
10 15 0.33
11 6 0.13
12 10 0.22
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:82196360 original size:16 final size:16
Alignment explanation
Indices: 82196337--82196378 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
82196327 CATATTTTTA
82196337 TTATAATTTTTTAT-T
1 TTATAATTTTTTATCT
*
82196352 TTAATAA-TTTATATCT
1 TT-ATAATTTTTTATCT
82196368 TTATAATTTTT
1 TTATAATTTTT
82196379 AAAAAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATAATTTTTTATCT
Found at i:82199239 original size:21 final size:21
Alignment explanation
Indices: 82199215--82199255 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
82199205 GGTCGTGTGG
*
82199215 CTACTACACACGCCCGTGTAA
1 CTACTACACACGCCCATGTAA
**
82199236 CTACTTTACACGCCCATGTA
1 CTACTACACACGCCCATGTA
82199256 TGCTAACCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.37, G:0.12, T:0.24
Consensus pattern (21 bp):
CTACTACACACGCCCATGTAA
Found at i:82201519 original size:9 final size:9
Alignment explanation
Indices: 82201505--82201553 Score: 66
Period size: 9 Copynumber: 5.7 Consensus size: 9
82201495 CATTCATGGT
82201505 AAAATTTTA
1 AAAATTTTA
82201514 AAAA-TTTA
1 AAAATTTTA
82201522 AAAATTTTA
1 AAAATTTTA
*
82201531 CAAA-TTTA
1 AAAATTTTA
82201539 AAAATTTTA
1 AAAATTTTA
*
82201548 CAAATT
1 AAAATT
82201554 AGTCTTCAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
8 15 0.43
9 20 0.57
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (9 bp):
AAAATTTTA
Found at i:82201521 original size:8 final size:8
Alignment explanation
Indices: 82201504--82201545 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
82201494 TCATTCATGG
*
82201504 TAAAATTT
1 TAAAAATT
82201512 TAAAAATT
1 TAAAAATT
82201520 TAAAAATTT
1 TAAAAA-TT
*
82201529 TACAAATT
1 TAAAAATT
82201537 TAAAAATT
1 TAAAAATT
82201545 T
1 T
82201546 TACAAATTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
8 23 0.77
9 7 0.23
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (8 bp):
TAAAAATT
Found at i:82201527 original size:17 final size:17
Alignment explanation
Indices: 82201505--82201553 Score: 89
Period size: 17 Copynumber: 2.9 Consensus size: 17
82201495 CATTCATGGT
*
82201505 AAAATTTTAAAAATTTA
1 AAAATTTTACAAATTTA
82201522 AAAATTTTACAAATTTA
1 AAAATTTTACAAATTTA
82201539 AAAATTTTACAAATT
1 AAAATTTTACAAATT
82201554 AGTCTTCAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (17 bp):
AAAATTTTACAAATTTA
Found at i:82205207 original size:9 final size:9
Alignment explanation
Indices: 82205192--82205238 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
82205182 CAAAATAAAT
82205192 ATTAATTTA
1 ATTAATTTA
*
82205201 GTTAATTTA
1 ATTAATTTA
82205210 ATTAA-TTA
1 ATTAATTTA
*
82205218 ATTAAATTA
1 ATTAATTTA
* *
82205227 ACTAAATTA
1 ATTAATTTA
82205236 ATT
1 ATT
82205239 TCTCAATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
8 8 0.24
9 25 0.76
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (9 bp):
ATTAATTTA
Found at i:82205255 original size:16 final size:18
Alignment explanation
Indices: 82205229--82205261 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82205219 TTAAATTAAC
82205229 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
82205246 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
82205262 CTCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:82206100 original size:13 final size:13
Alignment explanation
Indices: 82206082--82206117 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
82206072 ACATCAGAGT
*
82206082 ATACAAGTCACGC
1 ATACAAGTCACAC
82206095 ATACAAGTCACAC
1 ATACAAGTCACAC
82206108 ATACATAGTC
1 ATACA-AGTC
82206118 TATCATCCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.42, C:0.28, G:0.11, T:0.19
Consensus pattern (13 bp):
ATACAAGTCACAC
Found at i:82206831 original size:25 final size:24
Alignment explanation
Indices: 82206784--82206833 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
82206774 TATTATTTAC
*
82206784 TATTATTATATTGTAATTAGATTA
1 TATTATTATATTGTAATGAGATTA
* *
82206808 TATTATTATAATTTTAATGGGATTA
1 TATTATTAT-ATTGTAATGAGATTA
82206833 T
1 T
82206834 GATAAGTCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (24 bp):
TATTATTATATTGTAATGAGATTA
Found at i:82227775 original size:21 final size:20
Alignment explanation
Indices: 82227749--82227815 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 20
82227739 TTTTTATTTA
82227749 TTAAAATATATTTTCTTGAAT
1 TTAAAATATATTTT-TTGAAT
*
82227770 TTAAAAGTATATTTTAT-ATAT
1 TTAAAA-TATATTTTTTGA-AT
82227791 TCTAAAATATATTTTTTAGAAT
1 T-TAAAATATATTTTTT-GAAT
82227813 TTA
1 TTA
82227816 TATGAATATG
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 1 0.03
21 21 0.54
22 16 0.41
23 1 0.03
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.52
Consensus pattern (20 bp):
TTAAAATATATTTTTTGAAT
Found at i:82227806 original size:22 final size:21
Alignment explanation
Indices: 82227736--82227806 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 21
82227726 TCTACACGTA
*
82227736 ATATTTTTATTTA-TTAAAAT
1 ATATTTTTATATATTTAAAAT
82227756 ATATTTTCT-TGA-ATTTAAAAGT
1 ATATTTT-TAT-ATATTTAAAA-T
82227778 ATA-TTTTATATATTCTAAAAT
1 ATATTTTTATATATT-TAAAAT
82227799 ATATTTTT
1 ATATTTTT
82227807 TAGAATTTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 14
0.74 0.02 0.25
Matches are distributed among these distances:
20 11 0.26
21 18 0.43
22 13 0.31
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (21 bp):
ATATTTTTATATATTTAAAAT
Found at i:82234955 original size:13 final size:12
Alignment explanation
Indices: 82234937--82234972 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
82234927 CCAATTTGTG
82234937 AAAAAAATAAAA
1 AAAAAAATAAAA
*
82234949 TAAAAAATAAAA
1 AAAAAAATAAAA
82234961 AATAAAAATAAA
1 AA-AAAAATAAA
82234973 GAACACACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAAATAAAA
Found at i:82236063 original size:60 final size:58
Alignment explanation
Indices: 82235928--82236099 Score: 200
Period size: 60 Copynumber: 2.9 Consensus size: 58
82235918 TTAATATAAT
* * *
82235928 ATTTGGTACCTAAATTTGACATTTTTTCTTAATTTGGTATTTAAAACTTTTTTTGCCCA
1 ATTTGGTACCTAAACTTGACATTTTTTCCTAATTTGGTACTT-AAACTTTTTTTGCCCA
*** * * *
82235987 ATTCAATACCTGAACTTGATACTTTTTCCTAATTTGGTACTTAAACTTTTTTTGAGCCCA
1 ATTTGGTACCTAAACTTGACATTTTTTCCTAATTTGGTACTTAAACTTTTTTT--GCCCA
* * * *
82236047 ATTTGGCACCTAAACTTGGCATTTTTTCCTAATTTGGTACTTGAGCTTTTTTT
1 ATTTGGTACCTAAACTTGACATTTTTTCCTAATTTGGTACTTAAACTTTTTTT
82236100 TAGGTTCAAT
Statistics
Matches: 92, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
58 11 0.12
59 33 0.36
60 48 0.52
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.48
Consensus pattern (58 bp):
ATTTGGTACCTAAACTTGACATTTTTTCCTAATTTGGTACTTAAACTTTTTTTGCCCA
Found at i:82242652 original size:23 final size:24
Alignment explanation
Indices: 82242622--82242671 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
82242612 AAAGTGGAAA
82242622 TTGAATGAAAATATGAAATTAG-C
1 TTGAATGAAAATATGAAATTAGTC
82242645 TTGAATGAAAATATGAAATTAGTC
1 TTGAATGAAAATATGAAATTAGTC
82242669 TTG
1 TTG
82242672 GTTTAGGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.44, C:0.04, G:0.18, T:0.34
Consensus pattern (24 bp):
TTGAATGAAAATATGAAATTAGTC
Found at i:82242743 original size:5 final size:5
Alignment explanation
Indices: 82242733--82242801 Score: 138
Period size: 5 Copynumber: 13.8 Consensus size: 5
82242723 TCAATATGAA
82242733 ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT
1 ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT
82242783 ATTGT ATTGT ATTGT ATTG
1 ATTGT ATTGT ATTGT ATTG
82242802 ATAAATTTTA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 64 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.59
Consensus pattern (5 bp):
ATTGT
Found at i:82243273 original size:22 final size:22
Alignment explanation
Indices: 82243245--82243313 Score: 95
Period size: 22 Copynumber: 3.1 Consensus size: 22
82243235 TCTCCGATTA
82243245 TTAGCACATTAGTGCTCTT-TGT
1 TTAGCACATTAGTGCT-TTCTGT
*
82243267 TTAGCACATTCGTGCTTTCTGT
1 TTAGCACATTAGTGCTTTCTGT
* *
82243289 ATAGCACTTTAGTGCTTTCTGT
1 TTAGCACATTAGTGCTTTCTGT
82243311 TTA
1 TTA
82243314 ATAGTGCATA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
21 2 0.05
22 39 0.95
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.46
Consensus pattern (22 bp):
TTAGCACATTAGTGCTTTCTGT
Found at i:82243437 original size:31 final size:31
Alignment explanation
Indices: 82243395--82243465 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
82243385 AAGAATATGA
82243395 GATAGTAAATTGAAAATAGAATATAAAATAT
1 GATAGTAAATTGAAAATAGAATATAAAATAT
* * * *
82243426 GATAGTGAATTGAAACTAGAATGTGAAATAT
1 GATAGTAAATTGAAAATAGAATATAAAATAT
*
82243457 G-TTGTAAAT
1 GATAGTAAAT
82243466 ACATGGAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 6 0.18
31 28 0.82
ACGTcount: A:0.49, C:0.01, G:0.18, T:0.31
Consensus pattern (31 bp):
GATAGTAAATTGAAAATAGAATATAAAATAT
Found at i:82249994 original size:27 final size:27
Alignment explanation
Indices: 82249963--82250019 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
82249953 GTGACATTCC
82249963 TAAAACACTTTGAGTCAAGAATAGTGT
1 TAAAACACTTTGAGTCAAGAATAGTGT
82249990 TAAAACACTTTGAGTCAAGAATAGTGT
1 TAAAACACTTTGAGTCAAGAATAGTGT
82250017 TAA
1 TAA
82250020 TATAAGATGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.30
Consensus pattern (27 bp):
TAAAACACTTTGAGTCAAGAATAGTGT
Found at i:82251035 original size:10 final size:10
Alignment explanation
Indices: 82251016--82251065 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
82251006 TTAAATTCTA
82251016 AAAGATAAAT
1 AAAGATAAAT
82251026 ACAA-ATAAAT
1 A-AAGATAAAT
*
82251036 AAAGATAATT
1 AAAGATAAAT
82251046 AAAGATAAAT
1 AAAGATAAAT
82251056 GAAA-ATAAAT
1 -AAAGATAAAT
82251066 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:82251098 original size:13 final size:12
Alignment explanation
Indices: 82251082--82251111 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
82251072 ATTAAATCTA
82251082 AATAATTATCCTT
1 AATAATTATCC-T
82251095 AATAATTATCCT
1 AATAATTATCCT
82251107 AATAA
1 AATAA
82251112 CATTAAATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAATTATCCT
Found at i:82262316 original size:21 final size:19
Alignment explanation
Indices: 82262292--82262343 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
82262282 TGGAGTATGT
*
82262292 TAATTGATATTGAATATTGAA
1 TAATTCATATTG-AT-TTGAA
*
82262313 TAATTCATGTTGATTTGAA
1 TAATTCATATTGATTTGAA
82262332 TAATTTCATATT
1 TAA-TTCATATT
82262344 AATGTTAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 8 0.30
20 9 0.33
21 10 0.37
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (19 bp):
TAATTCATATTGATTTGAA
Found at i:82263682 original size:19 final size:16
Alignment explanation
Indices: 82263643--82263691 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
82263633 TATGAATTAA
*
82263643 ATATTAGTATTATATT
1 ATATTATTATTATATT
*
82263659 ATATTATTATTATAAT
1 ATATTATTATTATATT
*
82263675 GTATTATTATTAATATT
1 ATATTATTATT-ATATT
82263692 TTTAACTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
16 24 0.86
17 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (16 bp):
ATATTATTATTATATT
Found at i:82263707 original size:2 final size:2
Alignment explanation
Indices: 82263700--82263741 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
82263690 TTTTTAACTA
82263700 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82263742 GAAATAAAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82265450 original size:68 final size:67
Alignment explanation
Indices: 82265404--82265598 Score: 275
Period size: 68 Copynumber: 2.8 Consensus size: 67
82265394 ATACTATATA
*
82265404 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
82265469 AAT
65 AAT
82265472 GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
82265537 AAT
65 AAT
* * * * *
82265540 GTAGCTAGGTCGCATGAGTGATTCCAAGTGAAGGA-CACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGTGTGA-TAC-AG-GATGTATC-CCATGTAGACAAGAGAGCTACG
82265599 AGATAAATCG
Statistics
Matches: 117, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 86 0.74
69 2 0.02
70 3 0.03
71 26 0.22
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:82265635 original size:66 final size:67
Alignment explanation
Indices: 82265438--82265635 Score: 201
Period size: 68 Copynumber: 2.9 Consensus size: 67
82265428 GGGATGTATC
* *
82265438 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C-AG-GA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
82265500 TGTATC-
62 AGGA-CA
*
82265506 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
82265571 AGGACA
62 AGGACA
* *
82265577 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
82265636 TTCACCATGT
Statistics
Matches: 117, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
66 24 0.21
67 9 0.08
68 55 0.47
69 1 0.01
70 3 0.03
71 25 0.21
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:82267646 original size:44 final size:44
Alignment explanation
Indices: 82267597--82267688 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
82267587 TGTTCAAGGA
* * *
82267597 TACTTCGACCTT-GAGTTGATGAGGCACTATAAGTGTCGTACTGT
1 TACTTCGA-CTTCGAGTCGATGAGGCACCATAAGTGTCGTACTGC
*
82267641 TACTTCGACTTCGAGTCGATGAGGCACCATATGTGTCGTACTGC
1 TACTTCGACTTCGAGTCGATGAGGCACCATAAGTGTCGTACTGC
82267685 TACT
1 TACT
82267689 GTTACATTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 3 0.07
44 40 0.93
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.33
Consensus pattern (44 bp):
TACTTCGACTTCGAGTCGATGAGGCACCATAAGTGTCGTACTGC
Found at i:82268534 original size:38 final size:38
Alignment explanation
Indices: 82268492--82268566 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
82268482 ATTTGATAAT
82268492 GTATGTGAAATACTTAAAAAGATTCATCATATAAGCAC
1 GTATGTGAAATACTTAAAAAGATTCATCATATAAGCAC
82268530 GTATGTGAAATACTTAAAAAGATTCATCATATAAGCA
1 GTATGTGAAATACTTAAAAAGATTCATCATATAAGCA
82268567 TGTAAAATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.29
Consensus pattern (38 bp):
GTATGTGAAATACTTAAAAAGATTCATCATATAAGCAC
Found at i:82270610 original size:10 final size:9
Alignment explanation
Indices: 82270598--82270644 Score: 62
Period size: 8 Copynumber: 5.3 Consensus size: 9
82270588 ATGACAAATC
82270598 ATATCATAT
1 ATATCATAT
82270607 CATATCATAT
1 -ATATCATAT
82270617 ATAT-ATAT
1 ATATCATAT
82270625 ATAT-ATAT
1 ATATCATAT
*
82270633 ATATCTTAT
1 ATATCATAT
82270642 ATA
1 ATA
82270645 GTTATTTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
8 16 0.46
9 10 0.29
10 9 0.26
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.47
Consensus pattern (9 bp):
ATATCATAT
Found at i:82270644 original size:2 final size:2
Alignment explanation
Indices: 82270598--82270636 Score: 51
Period size: 2 Copynumber: 18.0 Consensus size: 2
82270588 ATGACAAATC
82270598 AT AT CAT AT CAT AT CAT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT -AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
82270637 CTTATATAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 28 0.82
3 6 0.18
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:82270701 original size:14 final size:16
Alignment explanation
Indices: 82270672--82270708 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
82270662 TACATAAATT
82270672 TTATA-TAATCATATA
1 TTATATTAATCATATA
82270687 TTA-ATTAAT-ATATA
1 TTATATTAATCATATA
82270701 TTATATTA
1 TTATATTA
82270709 TTTTCTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
TTATATTAATCATATA
Found at i:82274309 original size:57 final size:57
Alignment explanation
Indices: 82274234--82274348 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
82274224 ACTTCAAAAG
*
82274234 GGGCGTCACAACTTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
1 GGGCGTCACAAATTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
*
82274291 GGGCGTTACAAATTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
1 GGGCGTCACAAATTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
82274348 G
1 G
82274349 TTAGGAAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (57 bp):
GGGCGTCACAAATTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
Found at i:82276775 original size:16 final size:15
Alignment explanation
Indices: 82276748--82276778 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
82276738 ATCATTTTTC
82276748 TTAAATTTATTTATT
1 TTAAATTTATTTATT
82276763 TTAAATATTATTTATT
1 TTAAAT-TTATTTATT
82276779 ATTTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTAAATTTATTTATT
Found at i:82276854 original size:5 final size:5
Alignment explanation
Indices: 82276836--82276979 Score: 67
Period size: 5 Copynumber: 30.0 Consensus size: 5
82276826 TATTTTCAAG
*
82276836 TATAT T-TA- TATAT TATAT TAT-T TATTAGT ATATAT TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT TA-TA-T -TATAT TATAT TATAT
* * * *
82276881 T-T-T TATA- T-TAT TATAT ATATAT TATAT TATCT TATGT TTTAA TATA-
1 TATAT TATAT TATAT TATAT -TATAT TATAT TATAT TATAT TATAT TATAT
* * * * * *
82276927 CAT-T ATATAT TATAT TATTT TATTT TATTT TATAT TTTAT CATA- TAT-T
1 TATAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
82276975 TATAT
1 TATAT
82276980 CTTATTACAT
Statistics
Matches: 107, Mismatches: 16, Indels: 32
0.69 0.10 0.21
Matches are distributed among these distances:
3 5 0.05
4 18 0.17
5 72 0.67
6 7 0.07
7 3 0.03
8 2 0.02
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:82276860 original size:52 final size:54
Alignment explanation
Indices: 82276801--82276915 Score: 139
Period size: 52 Copynumber: 2.1 Consensus size: 54
82276791 ATATAAAAAT
* *
82276801 TTATTTATTTGTATATTATT-TTTGT-TATTTTCA-AGTA-TATTTATATATTATA
1 TTATTTATTAGTATA-TATTATTT-TATATTTTCATAGTATTATATATATATTATA
* *
82276853 TTATTTATTAGTATATATTATTTTATATTTTTATATTATTATATATATATTATA
1 TTATTTATTAGTATATATTATTTTATATTTTCATAGTATTATATATATATTATA
82276907 TTATCTTAT
1 TTAT-TTAT
82276916 GTTTTAATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
51 5 0.09
52 24 0.44
53 3 0.06
54 18 0.33
55 4 0.07
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.63
Consensus pattern (54 bp):
TTATTTATTAGTATATATTATTTTATATTTTCATAGTATTATATATATATTATA
Found at i:82276861 original size:32 final size:29
Alignment explanation
Indices: 82276850--82276954 Score: 76
Period size: 34 Copynumber: 3.6 Consensus size: 29
82276840 TTTATATATT
*
82276850 ATATTATTTATTAGTATATA-TTAT-T-TT
1 ATATTATTTATT-TTATATATTTATATATT
* *
82276877 ATATT-TTTATATTAT-TATATATATATT
1 ATATTATTTATTTTATATATTTATATATT
*
82276904 ATATTATCTTATGTTTTAATATACATTATATATT
1 ATATTAT-TTA--TTTT-ATATA-TTTATATATT
82276938 ATATTATTTTATTTTAT
1 ATATTA-TTTATTTTAT
82276955 TTTATATTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
24 2 0.03
25 6 0.10
26 6 0.10
27 12 0.20
28 1 0.02
29 3 0.05
31 5 0.08
32 6 0.10
33 2 0.03
34 17 0.28
35 1 0.02
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (29 bp):
ATATTATTTATTTTATATATTTATATATT
Found at i:82276870 original size:22 final size:22
Alignment explanation
Indices: 82276838--82276991 Score: 91
Period size: 20 Copynumber: 7.5 Consensus size: 22
82276828 TTTTCAAGTA
82276838 TATT-TATATATTATATTAT-T
1 TATTATATATATTATATTATAT
*
82276858 TATTAGTATATATTATTTTATAT
1 TATTA-TATATATTATATTATAT
*
82276881 TTTTATAT-TATTATA-TATA-
1 TATTATATATATTATATTATAT
* * * *
82276900 TATTATATTATCTTATGTTTTAA
1 TATTATA-TATATTATATTATAT
*
82276923 TA-TACAT-TA-TATATTATAT
1 TATTATATATATTATATTATAT
* *
82276942 TATT-T-TATTTTATTTTATAT
1 TATTATATATATTATATTATAT
*
82276962 T-TTATCATATATT-TA-TATCT
1 TATTAT-ATATATTATATTATAT
*
82276982 TATTACATAT
1 TATTATATAT
82276992 TATCATGTAT
Statistics
Matches: 101, Mismatches: 19, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
18 1 0.01
19 18 0.18
20 31 0.31
21 16 0.16
22 28 0.28
23 7 0.07
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (22 bp):
TATTATATATATTATATTATAT
Found at i:82276879 original size:10 final size:10
Alignment explanation
Indices: 82276800--82276962 Score: 81
Period size: 10 Copynumber: 15.8 Consensus size: 10
82276790 CATATAAAAA
82276800 TTTAT-TTAT
1 TTTATATTAT
82276809 TTGTATATTAT
1 TT-TATATTAT
*
82276820 TTT-TGTTAT
1 TTTATATTAT
82276829 TTTCA-AGTATAT
1 TTT-ATA-T-TAT
82276841 TTATATATTAT
1 TT-TATATTAT
*
82276852 ATTAT-TTAT
1 TTTATATTAT
82276861 TAGTATATATTAT
1 T--T-TATATTAT
82276874 TTTATA-T-T
1 TTTATATTAT
82276882 TTTATATTAT
1 TTTATATTAT
*
82276892 TATATA-TAT
1 TTTATATTAT
*
82276901 ATTATATTAT
1 TTTATATTAT
* *
82276911 CTTATGTT-T
1 TTTATATTAT
*
82276920 TAATATACATTAT
1 T--T-TATATTAT
82276933 ATATTATATTAT
1 -T-TTATATTAT
*
82276945 TTTATTTTAT
1 TTTATATTAT
82276955 TTTATATT
1 TTTATATT
82276963 TTATCATATA
Statistics
Matches: 119, Mismatches: 15, Indels: 39
0.69 0.09 0.23
Matches are distributed among these distances:
8 7 0.06
9 24 0.20
10 41 0.34
11 15 0.13
12 21 0.18
13 10 0.08
14 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTATATTAT
Found at i:82276902 original size:34 final size:34
Alignment explanation
Indices: 82276840--82276973 Score: 105
Period size: 37 Copynumber: 3.8 Consensus size: 34
82276830 TTCAAGTATA
*
82276840 TTTATA-TATTATATTATT-TATTAGTATATATTAT
1 TTTATATTTTTATATTATTATA-TA-TATATATTAT
82276874 TTTATATTTTTATATTATTATATATATATTATATTAT
1 TTTATATTTTTATATTA-T-TATATATA-TATATTAT
* * * *
82276911 CTTATGTTTTAATATACATTATATAT-TATATTAT
1 TTTATATTTTTATAT-TATTATATATATATATTAT
*
82276945 TTTATTTTATTTTATATT-TTATCATATAT
1 TTTA-TAT-TTTTATATTATTAT-ATATAT
82276974 TTATATCTTA
Statistics
Matches: 81, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
34 21 0.26
35 15 0.19
36 18 0.22
37 24 0.30
38 3 0.04
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (34 bp):
TTTATATTTTTATATTATTATATATATATATTAT
Found at i:82276978 original size:18 final size:18
Alignment explanation
Indices: 82276931--82276984 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
82276921 AATATACATT
*
82276931 ATATATTATATTATTTTATT
1 ATATATT-TA-TATTTTATC
*
82276951 TTAT-TTTATATTTTATC
1 ATATATTTATATTTTATC
*
82276968 ATATATTTATATCTTAT
1 ATATATTTATATTTTAT
82276985 TACATATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 11 0.38
18 13 0.45
19 2 0.07
20 3 0.10
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (18 bp):
ATATATTTATATTTTATC
Found at i:82277149 original size:19 final size:20
Alignment explanation
Indices: 82277119--82277163 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
82277109 TTTGTTATTT
*
82277119 TATTATATATA-TATTTATAC
1 TATTATATATATTA-TTACAC
82277139 TATTA-ATATATTATTACAC
1 TATTATATATATTATTACAC
82277158 TATTAT
1 TATTAT
82277164 GAAATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTATATATATTATTACAC
Found at i:82283010 original size:6 final size:6
Alignment explanation
Indices: 82282999--82283024 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
82282989 GATCACCCAC
82282999 TGTGAG TGTGAG TGTGAG TGTGAG TG
1 TGTGAG TGTGAG TGTGAG TGTGAG TG
82283025 AGGGAATCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (6 bp):
TGTGAG
Found at i:82288814 original size:23 final size:23
Alignment explanation
Indices: 82288784--82288830 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
82288774 GTTATGTTCG
82288784 GTAATGCCTCATAACCCTAGTCC
1 GTAATGCCTCATAACCCTAGTCC
*
82288807 GTAATGCCTCATAACTCTAGTCC
1 GTAATGCCTCATAACCCTAGTCC
82288830 G
1 G
82288831 GCGACGGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.28
Consensus pattern (23 bp):
GTAATGCCTCATAACCCTAGTCC
Found at i:82288914 original size:21 final size:21
Alignment explanation
Indices: 82288859--82288919 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
82288849 GTGTGTTACA
**
82288859 AAAACAATCAATTGAAACA-AC
1 AAAACAATCAATTGAAA-AGTG
*
82288880 AAAACAATCAATTGTAAAGTG
1 AAAACAATCAATTGAAAAGTG
**
82288901 AAAACAATTGATTGAAAAG
1 AAAACAATCAATTGAAAAG
82288920 AATCATTTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 1 0.03
21 32 0.97
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.20
Consensus pattern (21 bp):
AAAACAATCAATTGAAAAGTG
Found at i:82294444 original size:22 final size:22
Alignment explanation
Indices: 82294419--82294469 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
82294409 TTTGGCAGAA
82294419 AGCCATAGTCAAGATGGCACAG
1 AGCCATAGTCAAGATGGCACAG
** * * *
82294441 AGCCATTTTTAGGTTGGCACAG
1 AGCCATAGTCAAGATGGCACAG
82294463 AGCCATA
1 AGCCATA
82294470 ATCAGATTAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
AGCCATAGTCAAGATGGCACAG
Found at i:82297334 original size:50 final size:50
Alignment explanation
Indices: 82297254--82297374 Score: 215
Period size: 50 Copynumber: 2.4 Consensus size: 50
82297244 GGGGCGTTAC
82297254 AGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
1 AGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
*
82297304 AGTACTACACATGCGACCTAACTATTTGGTACACGTAGTAGCCTGCACTT
1 AGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
* *
82297354 AGTACTACACACGTGACCTAA
1 AGTACTACACATGCGACCTAA
82297375 AACCATCTTA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 68 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (50 bp):
AGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
Found at i:82300381 original size:96 final size:96
Alignment explanation
Indices: 82300215--82300408 Score: 280
Period size: 96 Copynumber: 2.0 Consensus size: 96
82300205 GTGTCCGAGG
* * * * * * * *
82300215 AAGTCTGTTATCGATGGGAATGATCGAGCAGATACGGAGCCCAAGAATCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGCTCAAGCAAGGG
82300280 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
*
82300311 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGCTCAAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGCTCAAGCAAGGG
* * *
82300376 TAAAGCCGAAGCCAAGAGGGCTAAGAGGTGC
66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
82300407 AA
1 AA
82300409 AAAGAAGTGA
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.35, C:0.19, G:0.34, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGCTCAAGCAAGGG
AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
Found at i:82303368 original size:15 final size:15
Alignment explanation
Indices: 82303343--82303416 Score: 69
Period size: 15 Copynumber: 4.9 Consensus size: 15
82303333 AGAATTCAAG
*
82303343 ATAAGGAAATCCAAA
1 ATAAAGAAATCCAAA
** *
82303358 ATGGAGAAATCCAGA
1 ATAAAGAAATCCAAA
* *
82303373 ATATAGAAATCCAAC
1 ATAAAGAAATCCAAA
82303388 ATAAAGAAATCCAAA
1 ATAAAGAAATCCAAA
*
82303403 A-CAAGAAAATCCAA
1 ATAAAG-AAATCCAA
82303417 TCAGACTGAC
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
14 3 0.06
15 44 0.94
ACGTcount: A:0.58, C:0.16, G:0.12, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAA
Found at i:82310977 original size:2 final size:2
Alignment explanation
Indices: 82310970--82310994 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82310960 ATTTTCATTC
82310970 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
82310995 AGCCGTAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82311372 original size:25 final size:25
Alignment explanation
Indices: 82311338--82311392 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
82311328 GGTTTAAAGA
* *
82311338 ATTCGTACACATAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
82311363 ATTCGCACACACAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
82311388 ATTCG
1 ATTCG
82311393 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:82311621 original size:40 final size:40
Alignment explanation
Indices: 82311556--82311756 Score: 348
Period size: 40 Copynumber: 5.0 Consensus size: 40
82311546 GATTACACAT
* * *
82311556 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
*
82311596 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
*
82311636 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
*
82311676 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
82311716 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
82311756 C
1 C
82311757 TCTCAATTCT
Statistics
Matches: 152, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 152 1.00
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.19
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
Found at i:82319161 original size:51 final size:50
Alignment explanation
Indices: 82319037--82319372 Score: 250
Period size: 50 Copynumber: 6.9 Consensus size: 50
82319027 GTAACTGAAG
* * * * * *
82319037 CTATCTGGTTCGCATAGTAGCCTGCATTTAGTATTACACATGCGACC-AA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * *
82319086 CAACCCGGTACACGTAGTATCCTGCACTTAGTACTACACATGTGA-TTGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA
* * *
82319136 GT-TGTCGAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
1 CTATCT-G-GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* *
82319187 CTATCTGGTACACGTAGTAGCCTGCACTTAG---T---GAT-TGA---AG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * *
82319227 TTGTC-GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 CTATCTG-GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* *
82319277 CTATCTGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT--AA
* *** * * *
82319329 CCATCTCAAACACATAGTAGCCTACACATAGTACTACACATGTG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTG
82319373 TTCTCAAAAA
Statistics
Matches: 220, Mismatches: 47, Indels: 37
0.72 0.15 0.12
Matches are distributed among these distances:
39 1 0.00
40 26 0.12
43 4 0.02
44 2 0.01
46 2 0.01
47 3 0.01
49 35 0.16
50 66 0.30
51 41 0.19
52 40 0.18
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
Found at i:82319176 original size:26 final size:26
Alignment explanation
Indices: 82319094--82319177 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 26
82319084 AACAACCCGG
* *
82319094 TACACGTAGTATCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
** * * *
82319120 TACACAT-GT-GATTGAAGTT-GTCGAG
1 TACACATAGTAGCCTGCACTTAGT--AC
82319145 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
82319171 TACACAT
1 TACACAT
82319178 GTGACCTAAC
Statistics
Matches: 41, Mismatches: 12, Indels: 10
0.65 0.19 0.16
Matches are distributed among these distances:
23 2 0.05
24 5 0.12
25 10 0.24
26 16 0.39
27 6 0.15
28 2 0.05
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:82319280 original size:90 final size:90
Alignment explanation
Indices: 82319127--82319308 Score: 337
Period size: 90 Copynumber: 2.0 Consensus size: 90
82319117 TACTACACAT
*
82319127 GTGATTGAAGTTGTCGAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATC
1 GTGATTGAAGTTGTCGAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATC
82319192 TGGTACACGTAGTAGCCTGCACTTA
66 TGGTACACGTAGTAGCCTGCACTTA
*
82319217 GTGATTGAAGTTGTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATC
1 GTGATTGAAGTTGTCGAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATC
*
82319282 TGGTACACGTAGTAGCTTGCACTTA
66 TGGTACACGTAGTAGCCTGCACTTA
82319307 GT
1 GT
82319309 ACTACACACG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (90 bp):
GTGATTGAAGTTGTCGAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATC
TGGTACACGTAGTAGCCTGCACTTA
Found at i:82319366 original size:52 final size:50
Alignment explanation
Indices: 82319239--82319368 Score: 152
Period size: 52 Copynumber: 2.6 Consensus size: 50
82319229 GTCGAGTACG
* * ***
82319239 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTCAAACA
* * *
82319289 CGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAAACCATCTCAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACCATCTCAAACA
* *
82319341 CATAGTAGCCTACACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
82319369 TGTGTTCTCA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 32 0.48
52 34 0.52
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTCAAACA
Found at i:82323752 original size:39 final size:39
Alignment explanation
Indices: 82323634--82323816 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
82323624 TCGTTCAAAC
* * ** * **
82323634 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
82323674 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
82323714 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
82323753 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
82323792 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
82323817 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:82331174 original size:39 final size:39
Alignment explanation
Indices: 82331056--82331238 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
82331046 TCGTTCAAAC
* * ** * **
82331056 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
82331096 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
82331136 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
82331175 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
82331214 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
82331239 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:82335043 original size:40 final size:40
Alignment explanation
Indices: 82334984--82335151 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
82334974 CATTTGAATG
* *
82334984 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATT
*
82335024 ATATCCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAG-TGATT
* * * **
82335064 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGA-TT
* * * * *
82335105 A-ATCCGGGTTAAGACCCGAAGGTAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATT
82335144 ATATCCGG
1 ATATCCGG
82335152 TTAAATCCCG
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
39 4 0.04
40 96 0.91
41 6 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATT
Found at i:82339284 original size:37 final size:37
Alignment explanation
Indices: 82339234--82339309 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
82339224 AGAGATTGCC
82339234 TACGGAGGCCCTATCAGATGCGAGCTACTAGTATGGG
1 TACGGAGGCCCTATCAGATGCGAGCTACTAGTATGGG
82339271 TACGGAGGCCCTATCAGATGCGAGCTACTAGTATGGG
1 TACGGAGGCCCTATCAGATGCGAGCTACTAGTATGGG
82339308 TA
1 TA
82339310 TTATTTAGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.22
Consensus pattern (37 bp):
TACGGAGGCCCTATCAGATGCGAGCTACTAGTATGGG
Found at i:82342800 original size:40 final size:41
Alignment explanation
Indices: 82342745--82342912 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 41
82342735 TGAATGATAC
* *
82342745 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
* * *
82342785 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
* ** *
82342825 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGCT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
* * * *
82342865 CCGGGTTAAGACCCGAAGGCAATTGTGCTTG-TGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
82342905 CC-GGCTAA
1 CCGGGCTAA
82342913 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
Found at i:82342878 original size:80 final size:80
Alignment explanation
Indices: 82342745--82342912 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
82342735 TGAATGATAC
* * ** *
82342745 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
82342809 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* *
82342825 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGCT-ACCAAATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGACCAAATCCGGGCTAAGACCCGAAGGCAATT
**
82342889 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
82342905 CC-GGCTAA
1 CCGGGCTAA
82342913 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 6 0.08
80 66 0.87
81 4 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:82351169 original size:20 final size:21
Alignment explanation
Indices: 82351144--82351190 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
82351134 AAAATAATTG
*
82351144 ATTGAAA-AACATAACAATCA
1 ATTGAAACAACAAAACAATCA
*
82351164 ATTGAAACAACAAAACAATCT
1 ATTGAAACAACAAAACAATCA
82351185 ATTGAA
1 ATTGAA
82351191 GAGAATCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.57, C:0.15, G:0.06, T:0.21
Consensus pattern (21 bp):
ATTGAAACAACAAAACAATCA
Found at i:82354268 original size:25 final size:25
Alignment explanation
Indices: 82354207--82354271 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
82354197 AGATTCTCAA
* *
82354207 CTCGTATGAGCTTACTAATTTATAG
1 CTCGTATGAGCATACTAATTCATAG
*
82354232 CTC--ATGAAAGCATACTGATTCATAG
1 CTCGTATG--AGCATACTAATTCATAG
82354257 CTCGTATGAGCATAC
1 CTCGTATGAGCATAC
82354272 ATGTATAGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
23 3 0.09
25 27 0.82
27 3 0.09
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (25 bp):
CTCGTATGAGCATACTAATTCATAG
Found at i:82354458 original size:30 final size:28
Alignment explanation
Indices: 82354424--82354479 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
82354414 GAAATAAATG
82354424 GAAATGGT-ATTACATGATATATTGAAACAT
1 GAAATGGTGA-TACATG-TATA-TGAAACAT
82354454 GAAATGGTGATACATGTATATGAAAC
1 GAAATGGTGATACATGTATATGAAAC
82354480 TTGCTTAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 6 0.24
29 4 0.16
30 14 0.56
31 1 0.04
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (28 bp):
GAAATGGTGATACATGTATATGAAACAT
Found at i:82357288 original size:2 final size:2
Alignment explanation
Indices: 82357281--82357321 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
82357271 ACATTGTAAC
82357281 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82357322 ACGGGAAGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82361439 original size:39 final size:40
Alignment explanation
Indices: 82361261--82361443 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
82361251 CCGCACCAAG
* * * * * * * *
82361261 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
82361301 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
82361341 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
82361381 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
82361420 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
82361444 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:82369536 original size:39 final size:40
Alignment explanation
Indices: 82369358--82369540 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
82369348 CCGCACCAAG
* * * * * * * *
82369358 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
82369398 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
82369438 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
82369478 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
82369517 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
82369541 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:82371387 original size:32 final size:34
Alignment explanation
Indices: 82371324--82371389 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
82371314 ATAGCAATAC
* *
82371324 CAGTGTGTGCCTTAGCTCATTACGGTAACAGTAT
1 CAGTGTGTGCCTTAGCCCATTACAGTAACAGTAT
82371358 CAGTGTG-GCCTTAGCCCAATT-CAGT-ACAGTAT
1 CAGTGTGTGCCTTAGCCC-ATTACAGTAACAGTAT
82371390 TAGAGATGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 7 0.24
33 12 0.41
34 10 0.34
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (34 bp):
CAGTGTGTGCCTTAGCCCATTACAGTAACAGTAT
Found at i:82371668 original size:26 final size:27
Alignment explanation
Indices: 82371638--82371696 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
82371628 ATGCTCGAAT
*
82371638 ACAGTCAAATATAGCA-TAGGGGTATA
1 ACAGTCAAATATACCACTAGGGGTATA
* * *
82371664 TCAGTC-ATTTTACCACTAGGGGTATA
1 ACAGTCAAATATACCACTAGGGGTATA
82371690 ACAGTCA
1 ACAGTCA
82371697 TTTCATCAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
ACAGTCAAATATACCACTAGGGGTATA
Found at i:82374842 original size:25 final size:25
Alignment explanation
Indices: 82374813--82374860 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
82374803 AAAATTAATG
*
82374813 CTAATTAAACTGGAATATTGAATTT
1 CTAATTAAACTGAAATATTGAATTT
82374838 CTAATTAAACTGAAATATTGAAT
1 CTAATTAAACTGAAATATTGAAT
82374861 GTTTTCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (25 bp):
CTAATTAAACTGAAATATTGAATTT
Found at i:82380627 original size:23 final size:24
Alignment explanation
Indices: 82380577--82380638 Score: 117
Period size: 23 Copynumber: 2.6 Consensus size: 24
82380567 CTTATTATGT
82380577 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
82380601 TCGCACACATAGTGCCATA-TAAA
1 TCGCACACATAGTGCCATAGTAAA
82380624 TCGCACACATAGTGC
1 TCGCACACATAGTGC
82380639 ATTTGAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 19 0.50
24 19 0.50
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:82388460 original size:24 final size:24
Alignment explanation
Indices: 82388433--82388495 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
82388423 CTTATTATGT
82388433 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
82388457 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
82388481 TCGCACACATAGTGC
1 TCGCACACATAGTGC
82388496 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:82397802 original size:2 final size:2
Alignment explanation
Indices: 82397797--82397835 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
82397787 TAATGTAGTA
82397797 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82397836 ACAAACAACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82400850 original size:28 final size:28
Alignment explanation
Indices: 82400810--82400894 Score: 113
Period size: 28 Copynumber: 3.1 Consensus size: 28
82400800 GGAAGCGTTT
*
82400810 TGGTGGCTATGCCACAAATATCTGATTC
1 TGGTGGCTCTGCCACAAATATCTGATTC
82400838 TGGTGGCTCTGCCACAAATATCT-ATATC
1 TGGTGGCTCTGCCACAAATATCTGAT-TC
* *
82400866 TGGTGACTCTGTCAC-AATATCTG-TTC
1 TGGTGGCTCTGCCACAAATATCTGATTC
82400892 TGG
1 TGG
82400895 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
26 5 0.10
27 10 0.19
28 37 0.71
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.34
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATATCTGATTC
Found at i:82409228 original size:53 final size:54
Alignment explanation
Indices: 82409148--82409354 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
82409138 TTCCTTTTTA
* * * **
82409148 AACTTACCATTTCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
82409201 AACTCACCATTGCGATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
82409255 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
82409310 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
82409355 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 43 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Done.