Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 272 of 335
Found at i:82415063 original size:40 final size:40
Alignment explanation
Indices: 82415004--82415145 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
82414994 AAATTGAATG
* * *
82415004 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
82415044 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
82415084 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
82415124 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
82415146 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:82415146 original size:40 final size:39
Alignment explanation
Indices: 82415043--82415171 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
82415033 TGCTGGAAAT
* * *
82415043 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
82415083 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
82415123 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
82415163 TATATCCGG
1 TATATCCGG
82415172 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:82423028 original size:40 final size:40
Alignment explanation
Indices: 82422969--82423110 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
82422959 AAATTGAATG
* * *
82422969 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
82423009 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
82423049 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
82423089 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
82423111 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:82423111 original size:40 final size:39
Alignment explanation
Indices: 82423008--82423136 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
82422998 TGCTGGAAAT
* * *
82423008 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
82423048 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
82423088 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
82423128 TATATCCGG
1 TATATCCGG
82423137 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:82426965 original size:18 final size:18
Alignment explanation
Indices: 82426942--82426976 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82426932 CCAAGTAAGG
*
82426942 TCTGAAAATTCGATTCAT
1 TCTGAAAATTCAATTCAT
82426960 TCTGAAAATTCAATTCA
1 TCTGAAAATTCAATTCA
82426977 ATAAGTCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (18 bp):
TCTGAAAATTCAATTCAT
Found at i:82434052 original size:46 final size:46
Alignment explanation
Indices: 82434002--82434177 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82433992 TGGTTGAGCA
82434002 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82434048 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
82434093 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82434141 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82434178 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 65 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82434158 original size:93 final size:93
Alignment explanation
Indices: 82433999--82434169 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
82433989 GGATGGTTGA
* *
82433999 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82434064 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
82434092 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82434157 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82434170 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82438527 original size:44 final size:44
Alignment explanation
Indices: 82438464--82438551 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
82438454 ATTGTTTCAA
*
82438464 TTTCACACCACTCTAGAACATTCCAATTCCACATTACTGAAATG
1 TTTCACACCACGCTAGAACATTCCAATTCCACATTACTGAAATG
82438508 TTTCACACCACGCTAGAACATTCCAATTCCACATTACTGAAATG
1 TTTCACACCACGCTAGAACATTCCAATTCCACATTACTGAAATG
82438552 AACTTAATGT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.30, G:0.08, T:0.28
Consensus pattern (44 bp):
TTTCACACCACGCTAGAACATTCCAATTCCACATTACTGAAATG
Found at i:82444051 original size:40 final size:39
Alignment explanation
Indices: 82443968--82444159 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
82443958 TTGAATGATG
* * * * *
82443968 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
82444008 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
82444048 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
82444087 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
82444128 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
82444160 CGTTATATCC
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:82444113 original size:79 final size:81
Alignment explanation
Indices: 82443968--82444159 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
82443958 TTGAATGATG
* * * *
82443968 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
82444032 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
82444048 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
82444111 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** *
82444128 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
82444160 CGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.58
80 40 0.41
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:82444174 original size:79 final size:77
Alignment explanation
Indices: 82443968--82444185 Score: 206
Period size: 79 Copynumber: 2.7 Consensus size: 77
82443958 TTGAATGATG
* * * * *
82443968 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGG-TTAAG-TCCGAAGGCATT
82444032 CGTGCGAGTTAATAAA
62 CGTGCGAGTTAATAAA
* * * *
82444048 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGTTAAGT-CCGAAGGCATTCG
*
82444113 TGCGAGTTACTATAA
64 TGCGAGTTAATA-AA
** ** *
82444128 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGTT-AAGTCCGAAGG
82444186 TACGTGATTC
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 65 0.56
80 50 0.43
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGTCCGAAGGCATTCGTG
CGAGTTAATAAA
Found at i:82446059 original size:27 final size:28
Alignment explanation
Indices: 82446003--82446072 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
82445993 AAATTTGTAC
82446003 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
82446031 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
82446058 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82446073 GAATCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:82452606 original size:27 final size:28
Alignment explanation
Indices: 82452550--82452619 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
82452540 AAATTTGTAC
82452550 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
82452578 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
82452605 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82452620 GAATCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:82457136 original size:40 final size:38
Alignment explanation
Indices: 82457047--82457237 Score: 159
Period size: 40 Copynumber: 4.8 Consensus size: 38
82457037 TGAATGATGT
* * * *
82457047 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTACTA-AA
* * * *
82457087 CCAGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTACTAAA
* *
82457126 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 -CCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAA
*
82457165 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
82457206 CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
82457238 CGTTATATCC
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (38 bp):
CCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:82457191 original size:79 final size:81
Alignment explanation
Indices: 82457046--82457237 Score: 223
Period size: 79 Copynumber: 2.4 Consensus size: 81
82457036 TTGAATGATG
* * * *
82457046 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCAGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCAGACTAAGATCCGAAGGCATT
82457110 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* * **
82457126 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCAGACTAAGAT-CCGAAGGCATT
*
82457189 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** *
82457206 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
82457238 CGTTATATCC
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.57
80 40 0.42
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCAGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:82457261 original size:79 final size:79
Alignment explanation
Indices: 82457098--82457263 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
82457088 CAGACTAAGA
* * *
82457098 TCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTA
*
82457163 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** **
82457177 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCAC
* *
82457241 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
82457256 TCCGAAGG
1 TCCGAAGG
82457264 TACGTGATTC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 45 0.62
80 27 0.38
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTA
AACCCGGGTTAAAT
Found at i:82459152 original size:27 final size:28
Alignment explanation
Indices: 82459096--82459165 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
82459086 AAATTTGTAC
82459096 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
82459124 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
82459151 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82459166 GAATCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:82467146 original size:27 final size:28
Alignment explanation
Indices: 82467090--82467156 Score: 118
Period size: 27 Copynumber: 2.4 Consensus size: 28
82467080 AAATTTGTAC
82467090 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
82467118 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
82467145 AGCACTAAGTGT
1 AGCACTAAGTGT
82467157 ACGGAATCAC
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:82469930 original size:28 final size:29
Alignment explanation
Indices: 82469843--82469918 Score: 113
Period size: 28 Copynumber: 2.7 Consensus size: 29
82469833 ACATACATGC
*
82469843 ATATGGCCCA-CTAGGCCTAATCTCATTT
1 ATATGGCCCATCTAGGCCCAATCTCATTT
*
82469871 ATATGGCCCAT-TAGGCCCAATTTCATTT
1 ATATGGCCCATCTAGGCCCAATCTCATTT
82469899 ATATGGCCCATCT-GGCCCAA
1 ATATGGCCCATCTAGGCCCAA
82469919 ATCGCATTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 43 0.98
29 1 0.02
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
ATATGGCCCATCTAGGCCCAATCTCATTT
Found at i:82470020 original size:9 final size:9
Alignment explanation
Indices: 82470007--82470042 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
82469997 ACACCCATCG
82470007 GGCCCATTT
1 GGCCCATTT
*
82470016 AGCCCATTCT
1 GGCCCATT-T
82470026 GGCCCATTT
1 GGCCCATTT
82470035 GGCCCATT
1 GGCCCATT
82470043 CACAACCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.14, C:0.36, G:0.19, T:0.31
Consensus pattern (9 bp):
GGCCCATTT
Found at i:82470031 original size:19 final size:19
Alignment explanation
Indices: 82470007--82470043 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
82469997 ACACCCATCG
82470007 GGCCCATTTAGCCCATTCT
1 GGCCCATTTAGCCCATTCT
*
82470026 GGCCCATTTGGCCCATTC
1 GGCCCATTTAGCCCATTC
82470044 ACAACCCAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.38, G:0.19, T:0.30
Consensus pattern (19 bp):
GGCCCATTTAGCCCATTCT
Found at i:82470231 original size:28 final size:30
Alignment explanation
Indices: 82470154--82470249 Score: 110
Period size: 29 Copynumber: 3.3 Consensus size: 30
82470144 CGGCATTTCA
* *
82470154 AATTCACGTTCAT-GTGGCCCATTAGGCCC
1 AATTCACATTCATAATGGCCCATTAGGCCC
82470183 AATTCACATTCATAAT-GCCCATTAGGCCC
1 AATTCACATTCATAATGGCCCATTAGGCCC
* * *
82470212 AA-TCTCATTTAT-ATGGCCCATTCGGCCC
1 AATTCACATTCATAATGGCCCATTAGGCCC
*
82470240 AAATCACATT
1 AATTCACATT
82470250 ATATTCATGC
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 22 0.38
29 33 0.57
30 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (30 bp):
AATTCACATTCATAATGGCCCATTAGGCCC
Found at i:82470251 original size:28 final size:28
Alignment explanation
Indices: 82470168--82470253 Score: 104
Period size: 28 Copynumber: 3.0 Consensus size: 28
82470158 CACGTTCATG
*
82470168 TGGCCCATTAGGCCCAATTCACATTCATAA
1 TGGCCCATTAGGCCCAAATCACATT-AT-A
*
82470198 T-GCCCATTAGGCCC-AATCTCATTTATA
1 TGGCCCATTAGGCCCAAATCACA-TTATA
*
82470225 TGGCCCATTCGGCCCAAATCACATTATA
1 TGGCCCATTAGGCCCAAATCACATTATA
82470253 T
1 T
82470254 TCATGCTCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
27 2 0.04
28 25 0.51
29 21 0.43
30 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACATTATA
Found at i:82470365 original size:19 final size:19
Alignment explanation
Indices: 82470322--82470367 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
82470312 TGGGCCCAAC
*
82470322 AGCCCA-TCGGGCCCATTT
1 AGCCCATTCCGGCCCATTT
*
82470340 AGTCCATTCCGGCCCATTT
1 AGCCCATTCCGGCCCATTT
*
82470359 GGCCCATTC
1 AGCCCATTC
82470368 ACAACCCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.15, C:0.39, G:0.20, T:0.26
Consensus pattern (19 bp):
AGCCCATTCCGGCCCATTT
Found at i:82470467 original size:324 final size:322
Alignment explanation
Indices: 82469846--82470476 Score: 1014
Period size: 324 Copynumber: 2.0 Consensus size: 322
82469836 TACATGCATA
* * * *
82469846 TGGCCCACTAGGCCTAATCTCATTTATATGGCCCATTAGGCCCAATTTCATTTATATGGCCCATC
1 TGGCCCACTAGGCCCAATCACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATC
*
82469911 TGGCCCAAATCGCATTATATTCATGCTCACACACAAATTTTCTATCACATAGCATCACTTATCAA
66 TGGCCCAAATCACATTATATTCATGCTCACACACAAATTTTCTATCACATAGCATCACTTATCAA
* * *
82469976 ATTTTGCCTATTTTGGGCCCAACACCCATCGGGCCCATTTAGCCCATTCTGGCCCATTTGGCCCA
131 ATTTTGCCTACTATGGGCCCAACACCCATCGGGCCCATTTAGCCCATTCCGGCCCATTTGGCCCA
* * *
82470041 TTCACAACCCAGGTCCATGGAATCGCCCATGGGCGTCAGGCAACCTATCGGTTTCCTCCTCACAA
196 TTCACAACCCAAGTCCATGGAATCGCCCATGGACCTCAGGCAACCTATCGGTTTCCTCCTCACAA
* * *
82470106 GTGTTCGCACACTCGCAAGACTACCGTAACCAAACTTTCGGCATTTCAAATTCACGTTCATG
261 GTGTTCGCACACTCGCAAGACTACCGCAACAAAACTTTCAGCATTTCAAATTCACGTTCATG
*
82470168 TGGCCCATTAGGCCCAATTCACATTCATAAT-GCCCATTAGGCCCAATCTCATTTATATGGCCCA
1 TGGCCCACTAGGCCCAA-TCACATTCAT-ATGGCCCATTAGGCCCAATCTCATTTATATGGCCCA
82470232 T-TCGGCCCAAATCACATTATATTCATGCTCACACACAAATTTTCTATCACATAGCATCACTTAT
64 TCT-GGCCCAAATCACATTATATTCATGCTCACACACAAATTTTCTATCACATAGCATCACTTAT
* *
82470296 CAAATTTTGCCTCCTATGGGCCCAACAGCCCATCGGGCCCATTTAGTCCATTCCGGCCCATTTGG
128 CAAATTTTGCCTACTATGGGCCCAACA-CCCATCGGGCCCATTTAGCCCATTCCGGCCCATTTGG
*
82470361 CCCATTCACAACCCAAGTCCATGGAATCGCCCATGGACCTCAGGTAACCTATCGGTTTCCTCCTC
192 CCCATTCACAACCCAAGTCCATGGAATCGCCCATGGACCTCAGGCAACCTATCGGTTTCCTCCTC
** * *
82470426 ATGAGTGTTCGTACACTCGCAAGACTACCGCAGCAAAACTTTCAGCATTTC
257 ACAAGTGTTCGCACACTCGCAAGACTACCGCAACAAAACTTTCAGCATTTC
82470477 GGTATTTCGA
Statistics
Matches: 283, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
322 16 0.06
323 125 0.44
324 142 0.50
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (322 bp):
TGGCCCACTAGGCCCAATCACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATC
TGGCCCAAATCACATTATATTCATGCTCACACACAAATTTTCTATCACATAGCATCACTTATCAA
ATTTTGCCTACTATGGGCCCAACACCCATCGGGCCCATTTAGCCCATTCCGGCCCATTTGGCCCA
TTCACAACCCAAGTCCATGGAATCGCCCATGGACCTCAGGCAACCTATCGGTTTCCTCCTCACAA
GTGTTCGCACACTCGCAAGACTACCGCAACAAAACTTTCAGCATTTCAAATTCACGTTCATG
Found at i:82471747 original size:16 final size:16
Alignment explanation
Indices: 82471723--82471753 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82471713 AAAATAAGAT
82471723 TTCGGGATTTTTGGGC
1 TTCGGGATTTTTGGGC
*
82471739 TTCGTGATTTTTGGG
1 TTCGGGATTTTTGGG
82471754 GTGTTACAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.10, G:0.35, T:0.48
Consensus pattern (16 bp):
TTCGGGATTTTTGGGC
Found at i:82477976 original size:28 final size:28
Alignment explanation
Indices: 82477929--82478068 Score: 115
Period size: 29 Copynumber: 4.9 Consensus size: 28
82477919 TACATACATG
*
82477929 CATATAGCCCA-CTAGGCCCAATCTCA-TT
1 CATATGGCCCATC-AGGCCCAAT-TCACTT
* * *
82477957 TATATGGCCCATCCGACCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
* *
82477986 CATGTGGACCATCAGGCCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
* *
82478015 CATATGACCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATCAGGCCCAAT-TCACTT
* * *
82478043 TATATGGCCCATCCGGCCCAAATCAC
1 CATATGGCCCATCAGGCCCAATTCAC
82478069 ATTATATTCA
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
27 6 0.07
28 35 0.39
29 45 0.51
30 3 0.03
ACGTcount: A:0.26, C:0.34, G:0.14, T:0.25
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATTCACTT
Found at i:82481989 original size:40 final size:40
Alignment explanation
Indices: 82481871--82482088 Score: 186
Period size: 40 Copynumber: 5.7 Consensus size: 40
82481861 AACCGAGCTT
* * * * * *
82481871 CTTCGGAATTTAG-CCGGATACAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * ** * *
82481910 CTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * *
82481950 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGC
* *
82481990 C-T----A---AGACCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
82482022 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
82482062 CTTCGGGACTTAGCCCGGATATAATCA
1 CTTCGGGACTTAGCCCGGATATAATCA
82482089 TTCGAATGCT
Statistics
Matches: 142, Mismatches: 26, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
32 24 0.17
33 2 0.01
37 1 0.01
39 10 0.07
40 105 0.74
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:82482081 original size:112 final size:112
Alignment explanation
Indices: 82481884--82482085 Score: 278
Period size: 112 Copynumber: 1.8 Consensus size: 112
82481874 CGGAATTTAG
* * * ** *
82481884 CCGGATACAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATACAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAAATG
*
82481949 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTAAGA
66 CCTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTAAGA
* * * * * * *
82481996 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCGGATACAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAAATG
82482061 CCTTCGGGACTTAGCCCGGATATAA
66 CCTTCGGGACTTAGCCCGGATATAA
82482086 TCATTCGAAT
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
112 76 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (112 bp):
CCGGATACAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTAAGA
Found at i:82487183 original size:4 final size:4
Alignment explanation
Indices: 82487176--82487206 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
82487166 GAAAAAAAAT
82487176 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
82487207 TTAGTAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:82490913 original size:206 final size:206
Alignment explanation
Indices: 82490550--82491305 Score: 1178
Period size: 206 Copynumber: 3.7 Consensus size: 206
82490540 CAGATCTGGC
*
82490550 TGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGCT
1 TGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA-ATCATAGCT
*
82490614 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCGAAGATGATTTGGCATCTCTATATTGTCAG
64 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAG
* * *
82490679 AGAACAAATCAAAGTTTGGCATCTCCATATTCGACAGAGAGCAGACACATAGTAGATCTGGCCTT
129 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTT
82490744 CATATGTTTATAT
194 CATATGTTTATAT
* *
82490757 TGAAGCATATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTGA
1 TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAATCATAGCTGA
* *
82490822 TTTGACTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
66 TTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGAG
82490887 AACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCA
131 AACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCA
82490952 TATGTTTATAT
196 TATGTTTATAT
* *
82490963 TGAAGCAGATCCAAGATGATTT-GCAATCCTTGTGTTTACAAGGAACAAATCAAAATCATAGCTG
1 TGAAGCAGATCCAAGATGATTTGGC-ATCCTTGTGCTTACAAGGAACAAATCGAAATCATAGCTG
*
82491027 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGA
** * **
82491092 GAACAAATTGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
130 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTC
* * * *
82491157 AGATGATTAGAC
195 ATATGTTTATAT
* * * * *
82491169 TGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATC-AAAGACATGGCTG
1 TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAA-TCATAGCTG
* * * *
82491233 ATTT-GTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGA
82491297 GAACAAATC
130 GAACAAATC
82491306 GAAGAAGCAG
Statistics
Matches: 512, Mismatches: 33, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
205 69 0.13
206 436 0.85
207 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (206 bp):
TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAATCATAGCTGA
TTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGAG
AACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCA
TATGTTTATAT
Found at i:82492785 original size:12 final size:12
Alignment explanation
Indices: 82492768--82492792 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82492758 CTAGACATAC
82492768 AAAATAATAATA
1 AAAATAATAATA
82492780 AAAATAATAATA
1 AAAATAATAATA
82492792 A
1 A
82492793 CATCCAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATAATAATA
Found at i:82502789 original size:43 final size:44
Alignment explanation
Indices: 82502735--82502852 Score: 120
Period size: 43 Copynumber: 2.7 Consensus size: 44
82502725 AACATATACA
* *
82502735 ATGCCAATGTCCCAAACGTGGTCTTACATGTAATCA-A-ACATTG
1 ATGCC-ATGTCCCAGACGTGGTCTTACATGTAATCAGATACAGTG
* *
82502778 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAGATACAGTG
1 ATGCCA-TGTCCCAGAC-GTGGTCTTACATGTAATCAGATACAGTG
* *
82502823 -T-CGATGTCCCAGACATGGTCTTACATGTAA
1 ATGCCATGTCCCAGACGTGGTCTTACATGTAA
82502853 AACAGAAGTC
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
42 23 0.37
43 31 0.50
44 3 0.05
45 5 0.08
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
ATGCCATGTCCCAGACGTGGTCTTACATGTAATCAGATACAGTG
Found at i:82507765 original size:13 final size:13
Alignment explanation
Indices: 82507749--82507775 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82507739 TTGGAACCCA
82507749 ACTTTGAGACTAT
1 ACTTTGAGACTAT
82507762 ACTTTGAGACTAT
1 ACTTTGAGACTAT
82507775 A
1 A
82507776 TGACCTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (13 bp):
ACTTTGAGACTAT
Found at i:82513146 original size:40 final size:38
Alignment explanation
Indices: 82513097--82513204 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82513087 ATCACGATTT
*
82513097 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82513137 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82513177 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82513205 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82518379 original size:40 final size:40
Alignment explanation
Indices: 82518334--82518500 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
82518324 CGGAATATAA
82518334 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
82518374 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
82518414 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
82518454 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
82518493 CCGGATAT
1 CCGGATAT
82518501 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82531940 original size:11 final size:11
Alignment explanation
Indices: 82531904--82531959 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
82531894 CATGGTATGT
82531904 ATGATATGCAC
1 ATGATATGCAC
* *
82531915 ATGACATG--T
1 ATGATATGCAC
82531924 ATGATATGCAC
1 ATGATATGCAC
*
82531935 ATGATATG--T
1 ATGATATGCAC
82531944 ATGATATGCAC
1 ATGATATGCAC
82531955 ATGAT
1 ATGAT
82531960 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:82531959 original size:20 final size:20
Alignment explanation
Indices: 82531893--82531959 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
82531883 ATTTTGATAA
*
82531893 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
82531913 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
82531933 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
82531953 ACATGAT
1 ACATGAT
82531960 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:82532039 original size:23 final size:23
Alignment explanation
Indices: 82532009--82532128 Score: 195
Period size: 23 Copynumber: 5.1 Consensus size: 23
82531999 AGAAAGTGAA
82532009 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
82532032 AAAGGGCTTATACCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
82532056 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
82532079 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
82532102 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
82532126 AAA
1 AAA
82532129 AGAGGCTAGG
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
23 47 0.52
24 43 0.48
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:82532064 original size:24 final size:23
Alignment explanation
Indices: 82532008--82532135 Score: 184
Period size: 24 Copynumber: 5.4 Consensus size: 23
82531998 GAGAAAGTGA
82532008 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
82532031 TAAAGGGCTTATACCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
82532054 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
82532078 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
82532102 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
82532126 AAAAGAGGCT
1 AAAAG-GGCT
82532136 AGGCCTCTTG
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
23 42 0.44
24 49 0.52
25 4 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:82532077 original size:47 final size:47
Alignment explanation
Indices: 82532008--82532128 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
82531998 GAGAAAGTGA
82532008 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATACCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATACCCCAGTTATC
* *
82532055 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATACCCCAGTTATC
*
82532102 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
82532129 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATACCCCAGTTATC
Found at i:82532385 original size:31 final size:31
Alignment explanation
Indices: 82532342--82532402 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
82532332 CGTTTACAGT
*
82532342 AAAGGCTTCGGCCCAGTAATATGAAATATGG
1 AAAGACTTCGGCCCAGTAATATGAAATATGG
**
82532373 AAAGACTTCGGCCCAGTGTTATGAAATATG
1 AAAGACTTCGGCCCAGTAATATGAAATATG
82532403 AAATATGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGACTTCGGCCCAGTAATATGAAATATGG
Found at i:82534492 original size:27 final size:27
Alignment explanation
Indices: 82534442--82534493 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
82534432 AGCTGCTAGA
*
82534442 AACAGTAAATGTGGCAAAGCCACCAGT
1 AACAGTAAATGTGACAAAGCCACCAGT
* * *
82534469 AACAGTGAATGTGACATAGTCACCA
1 AACAGTAAATGTGACAAAGCCACCA
82534494 ATATAGTACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (27 bp):
AACAGTAAATGTGACAAAGCCACCAGT
Found at i:82534665 original size:27 final size:27
Alignment explanation
Indices: 82534635--82534805 Score: 224
Period size: 27 Copynumber: 6.4 Consensus size: 27
82534625 ATAATTGTCC
* * * *
82534635 TTTTACCATACAGGGGTATTAAGTTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
82534662 TTTTACCCTACAGGGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
82534689 TTTTACCCTACAAGGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
82534716 TTTTACCCTACAGGGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* *
82534743 TTTTACCCTATAAGGGGTATT----TCA
1 TTTTACCCTA-CAGGGGCATTACGGTCA
*
82534767 TTTTACCCTACAGGGGCATTACGGTAA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
82534794 TTTTACACTACA
1 TTTTACCCTACA
82534806 AGGGTATTTT
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
23 8 0.06
24 13 0.10
27 98 0.77
28 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
TTTTACCCTACAGGGGCATTACGGTCA
Found at i:82534717 original size:54 final size:52
Alignment explanation
Indices: 82534635--82534867 Score: 254
Period size: 54 Copynumber: 4.4 Consensus size: 52
82534625 ATAATTGTCC
* *
82534635 TTTTACCATACAGGGGTATTAAGTTCATTTTACCCTACAGGGGCATTACGGTCA
1 TTTTACCCTACAAGGGTATT-AG-TCATTTTACCCTACAGGGGCATTACGGTCA
*
82534689 TTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGGTCA
1 TTTTACCCTACAAGGGTATTA--GTCATTTTACCCTACAGGGGCATTACGGTCA
* *
82534743 TTTTACCCTATAAGGGGTATT--TCATTTTACCCTACAGGGGCATTACGGTAA
1 TTTTACCCTACAA-GGGTATTAGTCATTTTACCCTACAGGGGCATTACGGTCA
* * ** * * * * *
82534794 TTTTACACTACAAGGGTATTTTAGTAATTTTACGTTACACGGGTATTTCGATAA
1 TTTTACCCTACAAGGGTA--TTAGTCATTTTACCCTACAGGGGCATTACGGTCA
*
82534848 TTTTACACTACAAGGGTATT
1 TTTTACCCTACAAGGGTATT
82534868 TCGATAAGTT
Statistics
Matches: 157, Mismatches: 15, Indels: 16
0.84 0.08 0.09
Matches are distributed among these distances:
50 5 0.03
51 40 0.25
52 4 0.03
53 1 0.01
54 100 0.64
55 7 0.04
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
TTTTACCCTACAAGGGTATTAGTCATTTTACCCTACAGGGGCATTACGGTCA
Found at i:82534851 original size:105 final size:104
Alignment explanation
Indices: 82534658--82534869 Score: 271
Period size: 105 Copynumber: 2.0 Consensus size: 104
82534648 GGGTATTAAG
* * * *
82534658 TTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACC
1 TTCATTTTACCCTACAGGGGCATTACGGTAATTTTACACTACAAGGGCATTACAGTAATTTTACC
* * * * *
82534723 CTACAGGGGCATTACGGTCATTTTACCCTATAAGGGGTAT
66 CTACACGGGCATTACGATAATTTTACACTACAA-GGGTAT
* ** *
82534763 TTCATTTTACCCTACAGGGGCATTACGGTAATTTTACACTACAAGGGTATTTTAGTAATTTTACG
1 TTCATTTTACCCTACAGGGGCATTACGGTAATTTTACACTACAAGGGCATTACAGTAATTTTACC
* * *
82534828 TTACACGGGTATTTCGATAATTTTACACTACAAGGGTAT
66 CTACACGGGCATTACGATAATTTTACACTACAAGGGTAT
82534867 TTC
1 TTC
82534870 GATAAGTTTA
Statistics
Matches: 91, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
104 9 0.10
105 82 0.90
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (104 bp):
TTCATTTTACCCTACAGGGGCATTACGGTAATTTTACACTACAAGGGCATTACAGTAATTTTACC
CTACACGGGCATTACGATAATTTTACACTACAAGGGTAT
Found at i:82534874 original size:27 final size:27
Alignment explanation
Indices: 82534661--82534863 Score: 180
Period size: 27 Copynumber: 7.6 Consensus size: 27
82534651 TATTAAGTTC
* *
82534661 ATTTTACCCTACAGGGGCATTACGGTC
1 ATTTTACCCTACAAGGGCATTACGGTA
*
82534688 ATTTTACCCTACAAGGGCATTACGGTC
1 ATTTTACCCTACAAGGGCATTACGGTA
* *
82534715 ATTTTACCCTACAGGGGCATTACGGTC
1 ATTTTACCCTACAAGGGCATTACGGTA
* * *
82534742 ATTTTACCCTATAAGGGGTATT----TC
1 ATTTTACCCTACAA-GGGCATTACGGTA
*
82534766 ATTTTACCCTACAGGGGCATTACGGTA
1 ATTTTACCCTACAAGGGCATTACGGTA
* * ***
82534793 ATTTTACACTACAAGGGTATTTTAGTA
1 ATTTTACCCTACAAGGGCATTACGGTA
** * * * *
82534820 ATTTTACGTTACACGGGTATTTCGATA
1 ATTTTACCCTACAAGGGCATTACGGTA
*
82534847 ATTTTACACTACAAGGG
1 ATTTTACCCTACAAGGG
82534864 TATTTCGATA
Statistics
Matches: 147, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
23 6 0.04
24 14 0.10
27 121 0.82
28 6 0.04
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGCATTACGGTA
Found at i:82543548 original size:46 final size:46
Alignment explanation
Indices: 82543495--82543662 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
82543485 TATTTGGGCA
82543495 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
82543541 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
82543588 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** *
82543634 TTTGAACTTGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
82543663 GAGAGATGTA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 59 0.59
47 31 0.31
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82543610 original size:47 final size:47
Alignment explanation
Indices: 82543541--82543708 Score: 182
Period size: 47 Copynumber: 3.6 Consensus size: 47
82543531 GATGCGAATG
*
82543541 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTTGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* *** * *
82543588 TCCGAGCTTGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAA
1 TCCGAACTTGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA
**
82543632 TGTTTGAACTTGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 --TCCGAACTTGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* *
82543681 TCCGAGCTTGTTAAGTTGAGTCCGAGTT
1 TCCGAACTTGTTGAGTTGAGTCCGAGTT
82543709 TGCTTATGGC
Statistics
Matches: 95, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 30 0.32
47 55 0.58
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (47 bp):
TCCGAACTTGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:82543650 original size:93 final size:93
Alignment explanation
Indices: 82543491--82543717 Score: 382
Period size: 93 Copynumber: 2.4 Consensus size: 93
82543481 AGGATATTTG
* *
82543491 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
82543556 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
** *
82543584 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTTGAACTTGTTGAG
1 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
82543649 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* **
82543677 GGCATCCGAGCTTGTTAAGTTGAGTCCGAGTTTGCTTATGG
1 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
82543718 CGGGTTACAT
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 126 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (93 bp):
GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:82550943 original size:29 final size:28
Alignment explanation
Indices: 82550909--82551011 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
82550899 TACTCAATCA
*
82550909 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
82550938 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
82550967 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
82550996 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
82551012 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:82558913 original size:29 final size:27
Alignment explanation
Indices: 82558879--82558981 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
82558869 TACTCAATCA
*
82558879 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
82558908 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
82558937 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
82558966 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
82558982 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:82564608 original size:51 final size:51
Alignment explanation
Indices: 82564553--82564656 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
82564543 CAAAGTTGGG
82564553 TGTTGAGACATTCTAGGTAGTCCATTGACTCTTCAGCCTAAAACAATTTTC
1 TGTTGAGACATTCTAGGTAGTCCATTGACTCTTCAGCCTAAAACAATTTTC
*
82564604 TGTTGAGACATTCTAGGTAGTCCATTGACTCTTCAGCCTAAAACGATTTTC
1 TGTTGAGACATTCTAGGTAGTCCATTGACTCTTCAGCCTAAAACAATTTTC
82564655 TG
1 TG
82564657 CACACTCAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (51 bp):
TGTTGAGACATTCTAGGTAGTCCATTGACTCTTCAGCCTAAAACAATTTTC
Found at i:82566534 original size:18 final size:18
Alignment explanation
Indices: 82566507--82566550 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
82566497 CTAGTGGTAA
* *
82566507 TAGTATTAATAGGAGGAG
1 TAGTAGTAATAGGAAGAG
* *
82566525 TAGTAGTAATAGTAATAG
1 TAGTAGTAATAGGAAGAG
82566543 TAGTAGTA
1 TAGTAGTA
82566551 GTCGTCTAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (18 bp):
TAGTAGTAATAGGAAGAG
Found at i:82576970 original size:48 final size:48
Alignment explanation
Indices: 82576876--82577135 Score: 162
Period size: 49 Copynumber: 5.5 Consensus size: 48
82576866 GACAAGGGCT
* * * ** *
82576876 AGTGTAAGA-CGTGTTTGGGACATGTATCAGCC-ACATTATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCTTGATGATGATAGCC
*
82576922 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCTTGATGATGATAGCC
* * * *** * *
82576970 AGTGTAAGA-CGTGTTTGGGACATGCATCAACAAAG-T-TTCG-T-GCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCTTGATGAT-GATAGCC
* * * * * * *
82577014 AGTGTAAGA-CATGTTTGGGACATGCATAAGCACGT-ATACACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGC-CTTGAT-GATGATAGCC
* * *
82577062 AGTGTAAGACCATGTCTGGGAAATGGCATCGGCCTCGATAGA-GATAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTTGAT-GATGATAGCC
* *
82577111 AGCGTAAGACCATGTCTAGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
82577136 GTAGCGGCAA
Statistics
Matches: 165, Mismatches: 37, Indels: 22
0.74 0.17 0.10
Matches are distributed among these distances:
44 30 0.18
45 3 0.02
46 12 0.07
47 38 0.23
48 33 0.20
49 39 0.24
50 10 0.06
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCCTTGATGATGATAGCC
Found at i:82576985 original size:94 final size:94
Alignment explanation
Indices: 82576824--82576998 Score: 244
Period size: 94 Copynumber: 1.9 Consensus size: 94
82576814 GTTATGTGAG
* * *
82576824 AGCCAGTATAAGACCATGTCTAGGACGTGGCATCGGCATTGAGACAAGGGCTAGTGTAAGACGTG
1 AGCCAGTATAAGACCATGTCTAGGACATGGCATCGGCATTGAGACAAGAGCCAGTGTAAGACGTG
*
82576889 TTTGGGACATGTATCAGCCACATTATGAT
66 TTTGGGACATGCATCAGCCACATTATGAT
* * * ** *
82576918 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTTGATGATGATAGCCAGTGTAAGACGT
1 AGCCAGTATAAGACCATGTCTAGGACATGGCATCGGCATTGA-GACAAGAGCCAGTGTAAGACGT
82576982 GTTTGGGACATGCATCA
65 GTTTGGGACATGCATCA
82576999 ACAAAGTTTC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
93 12 0.17
94 58 0.83
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (94 bp):
AGCCAGTATAAGACCATGTCTAGGACATGGCATCGGCATTGAGACAAGAGCCAGTGTAAGACGTG
TTTGGGACATGCATCAGCCACATTATGAT
Found at i:82576989 original size:47 final size:46
Alignment explanation
Indices: 82576876--82576998 Score: 165
Period size: 47 Copynumber: 2.6 Consensus size: 46
82576866 GACAAGGGCT
* *
82576876 AGTGTAAGACGTGTTTGGGACATGTATCAGCCACATTATGATAGCC
1 AGTGTAAGACGTGTTTGGGACATGCATCAGCCACATGATGATAGCC
* * * **
82576922 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGATGATGATAGCC
1 AGTGTAAGA-CGTGTTTGGGACATGCATCAGCC-ACATGATGATAGCC
82576970 AGTGTAAGACGTGTTTGGGACATGCATCA
1 AGTGTAAGACGTGTTTGGGACATGCATCA
82576999 ACAAAGTTTC
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 9 0.14
47 36 0.55
48 20 0.31
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (46 bp):
AGTGTAAGACGTGTTTGGGACATGCATCAGCCACATGATGATAGCC
Found at i:82584477 original size:47 final size:47
Alignment explanation
Indices: 82584339--82584648 Score: 163
Period size: 47 Copynumber: 6.6 Consensus size: 47
82584329 TGAGACAAGG
** * * * *
82584339 GCTAGTGTAAGATGTGTCTGGGACATGTATCGGCCAC-ATTATGA-T
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGATGATGAGT
* * * ** * *
82584384 AGCCAGTGCATGACCATGTCCGGGACATGGCATCGGCGTAGA-GATGAGT
1 -GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGATGATGAGT
* *
82584433 GCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA-T
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGATGATGAGT
* * ** **
82584479 AGCGAGTGTAAGACGTGTCTAGGACATGCATCGG-CTAAAT--TTTGT
1 -GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGATGATGAGT
* * * * *
82584524 GCTAGTGTAAGACATGTCTAGGACATGCATCAG-CACGCATACACGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCG-AT-GATGAGT
* * *
82584572 GCTAGTGTAAGATCATGTATGGGACATGGCATCAGCCTCGATG--GAGAT
1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGATGATGAG-T
* **
82584620 AGCCAACGTAAGACCATGTCTAGGACATG
1 -GCTAGTGTAAGA-CATGTCTAGGACATG
82584649 GCAGCGGCAA
Statistics
Matches: 201, Mismatches: 47, Indels: 30
0.72 0.17 0.11
Matches are distributed among these distances:
44 32 0.16
45 3 0.01
46 25 0.12
47 61 0.30
48 33 0.16
49 35 0.17
50 9 0.04
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGATGATGAGT
Found at i:82584504 original size:94 final size:93
Alignment explanation
Indices: 82584290--82584554 Score: 259
Period size: 94 Copynumber: 2.8 Consensus size: 93
82584280 GTTATGTGAG
** * * * * * **
82584290 AGCCAGTATAAGACCATGTCTAAGACGTGGCATCGGCATTGAGACAAGGGCTAGTGTAAGATGTG
1 AGCCAGTGCAAGACCATGTCTAGGACATGGCATCGGC-TAGAGATAAGTGCTAGTGTAAGACATG
* *
82584355 TCTGGGACATGTATCGGCCACATTATGAT
65 TCTGGGACATGCATCGGCCACATGATGAT
* ** * *
82584384 AGCCAGTGCATGACCATGTCCGGGACATGGCATCGGCGTAGAGATGAGTGCTAATGTAAGACATG
1 AGCCAGTGCAAGACCATGTCTAGGACATGGCATCGGC-TAGAGATAAGTGCTAGTGTAAGACATG
*
82584449 TCTGGGACATGCATCGGCCTCGATGATGAT
65 TCTGGGACATGCATCGGCCAC-ATGATGAT
* * * **
82584479 AGCGAGTGTAAGA-CGTGTCTAGGACAT-GCATCGGCTA-A-ATTTTGTGCTAGTGTAAGACATG
1 AGCCAGTGCAAGACCATGTCTAGGACATGGCATCGGCTAGAGA-TAAGTGCTAGTGTAAGACATG
*
82584540 TCTAGGACATGCATC
65 TCTGGGACATGCATC
82584555 AGCACGCATA
Statistics
Matches: 141, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
90 1 0.01
91 33 0.23
92 2 0.01
93 8 0.06
94 80 0.57
95 17 0.12
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (93 bp):
AGCCAGTGCAAGACCATGTCTAGGACATGGCATCGGCTAGAGATAAGTGCTAGTGTAAGACATGT
CTGGGACATGCATCGGCCACATGATGAT
Found at i:82585527 original size:55 final size:55
Alignment explanation
Indices: 82585418--82585530 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 55
82585408 CTTTTAAATC
* * * *
82585418 AGTATTGTCCACGGTTAGGCCACACGGGCATGTGCCATAGCTGTGTCTATAAGTT
1 AGTATTGCCCACGGGTAGGCCACACGGGCATGTGCCATAGCCGTGCCTATAAGTT
* * *
82585473 AGTATTGCCCACGGGTAGGCCACACGGGCGTGTGTCATGGCCGTGCCCTA-AAGTT
1 AGTATTGCCCACGGGTAGGCCACACGGGCATGTGCCATAGCCGTG-CCTATAAGTT
82585528 AGT
1 AGT
82585531 GTCGCACACG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 47 0.94
56 3 0.06
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (55 bp):
AGTATTGCCCACGGGTAGGCCACACGGGCATGTGCCATAGCCGTGCCTATAAGTT
Found at i:82585541 original size:55 final size:55
Alignment explanation
Indices: 82585427--82585542 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 55
82585417 CAGTATTGTC
* * * * *
82585427 CACGGTTAGGCCACACGGGCATGTGCCATAGCTGTGTCTATAAGTTAGTATTGCC
1 CACGGGTAGGCCACACGGGCATGTGCCATAGCCGTGCCTATAAGTTAGTATCGCA
* * * *
82585482 CACGGGTAGGCCACACGGGCGTGTGTCATGGCCGTGCCCTA-AAGTTAGTGTCGCA
1 CACGGGTAGGCCACACGGGCATGTGCCATAGCCGTG-CCTATAAGTTAGTATCGCA
82585537 CACGGG
1 CACGGG
82585543 CTGAGGACGT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 48 0.94
56 3 0.06
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (55 bp):
CACGGGTAGGCCACACGGGCATGTGCCATAGCCGTGCCTATAAGTTAGTATCGCA
Found at i:82588923 original size:22 final size:22
Alignment explanation
Indices: 82588861--82588923 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
82588851 GCCTAGTAGA
82588861 CTTAGTGCCAGTGTTATTCAGG
1 CTTAGTGCCAGTGTTATTCAGG
* *
82588883 CTTTGTGCC-----TA-GCAGG
1 CTTAGTGCCAGTGTTATTCAGG
82588899 CTTAGTGCCAGTGTTATTCAGG
1 CTTAGTGCCAGTGTTATTCAGG
82588921 CTT
1 CTT
82588924 TGTACCTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
16 12 0.39
17 2 0.06
21 2 0.06
22 15 0.48
ACGTcount: A:0.16, C:0.21, G:0.27, T:0.37
Consensus pattern (22 bp):
CTTAGTGCCAGTGTTATTCAGG
Found at i:82589000 original size:75 final size:76
Alignment explanation
Indices: 82588834--82589017 Score: 230
Period size: 75 Copynumber: 2.4 Consensus size: 76
82588824 AGAATTATAT
* * * *
82588834 TGTTATTCAGGCTTTGTGCCTAGTAGACTTAGTGCCAGTGTTATTCAGGCTTTGTGCCTAGCAGG
1 TGTTATTCAGGCTTTGTGCCTAGTAGGCTTAGTGCCAGTGTTATTCAAGCATTGTGCATAGCAGG
82588899 CTTAGTGCCAG
66 CTTAGTGCCAG
* * *
82588910 TGTTATTCAGGCTTTGTACCTAGTAGGCTTCA-TGCTAGTTTTATT-AAGCATTGTGCATAGCAG
1 TGTTATTCAGGCTTTGTGCCTAGTAGGCTT-AGTGCCAGTGTTATTCAAGCATTGTGCATAGCAG
**
82588973 GCATT-GTGCTGG
65 GC-TTAGTGCCAG
* *
82588985 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGT
1 TGTTATTCAGGCTTTGTGCCTAGTAGGCTTAGT
82589018 TCCGGTGTAT
Statistics
Matches: 93, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
74 1 0.01
75 50 0.54
76 41 0.44
77 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (76 bp):
TGTTATTCAGGCTTTGTGCCTAGTAGGCTTAGTGCCAGTGTTATTCAAGCATTGTGCATAGCAGG
CTTAGTGCCAG
Found at i:82589025 original size:38 final size:38
Alignment explanation
Indices: 82588834--82589017 Score: 221
Period size: 38 Copynumber: 4.9 Consensus size: 38
82588824 AGAATTATAT
* *
82588834 TGTTATTCAGGCTTTGTGCCTAGTAGACTTAGTGCCAG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCAG
82588872 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCAG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCAG
* * *
82588910 TGTTATTCAGGCTTTGTACCTAGTAGGCTTCA-TGCTAG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTT-AGTGCCAG
* * * * **
82588948 TTTTATT-AAGCATTGTGCATAGCAGGCATT-GTGCTGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGC-TTAGTGCCAG
*
82588985 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGT
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGT
82589018 TCCGGTGTAT
Statistics
Matches: 126, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
37 28 0.22
38 97 0.77
39 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (38 bp):
TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCAG
Found at i:82589227 original size:16 final size:19
Alignment explanation
Indices: 82589192--82589227 Score: 51
Period size: 16 Copynumber: 2.1 Consensus size: 19
82589182 ATCATCATCA
82589192 TCTTAGTTGTCAGTTTGGT
1 TCTTAGTTGTCAGTTTGGT
82589211 TCTT-GTTGT-AG-TTGGT
1 TCTTAGTTGTCAGTTTGGT
82589227 T
1 T
82589228 AAAGTGGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.35
17 2 0.12
18 5 0.29
19 4 0.24
ACGTcount: A:0.08, C:0.08, G:0.28, T:0.56
Consensus pattern (19 bp):
TCTTAGTTGTCAGTTTGGT
Found at i:82593821 original size:13 final size:13
Alignment explanation
Indices: 82593803--82593842 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
82593793 GGAGTAATGG
82593803 CACATGGGCGTGT
1 CACATGGGCGTGT
82593816 CACATGGGCGTGT
1 CACATGGGCGTGT
*
82593829 CACATGAGCGTGT
1 CACATGGGCGTGT
82593842 C
1 C
82593843 CTTACCGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.23
Consensus pattern (13 bp):
CACATGGGCGTGT
Found at i:82595961 original size:39 final size:39
Alignment explanation
Indices: 82595876--82596028 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
82595866 TATGGTAACC
** *
82595876 TGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 TGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* * *
82595916 TGCACAATTGCCTTCGGGCTTAGCCCAGATATCATAACT
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
**
82595955 CCCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
82595994 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
82596029 TCGAACATTC
Statistics
Matches: 100, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 84 0.84
40 16 0.16
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (39 bp):
TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:82604777 original size:5 final size:5
Alignment explanation
Indices: 82604769--82604824 Score: 71
Period size: 5 Copynumber: 11.6 Consensus size: 5
82604759 AACCTAAATT
* * *
82604769 AATAA AATAA AATAA AATAA AA-AT AA-AA AATAA AATAA AATAA TACAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
82604817 AATAA AAT
1 AATAA AAT
82604825 CTTTCTATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
4 6 0.14
5 38 0.86
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:82604789 original size:23 final size:22
Alignment explanation
Indices: 82604772--82604824 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
82604762 CTAAATTAAT
82604772 AAAATAAAATAAAATAAAAATAA
1 AAAATAAAATAAAAT-AAAATAA
*
82604795 AAAATAAAATAAAAT--AATAC
1 AAAATAAAATAAAATAAAATAA
82604815 AAAATAAAAT
1 AAAATAAAAT
82604825 CTTTCTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 14 0.48
23 15 0.52
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (22 bp):
AAAATAAAATAAAATAAAATAA
Found at i:82604800 original size:28 final size:27
Alignment explanation
Indices: 82604769--82604823 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
82604759 AACCTAAATT
82604769 AATAAAATAAAATAAAATA-AAAATAAAA
1 AATAAAATAAAAT--AATACAAAATAAAA
82604797 AATAAAATAAAATAATACAAAATAAAA
1 AATAAAATAAAATAATACAAAATAAAA
82604824 TCTTTCTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 4 0.15
27 9 0.35
28 13 0.50
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (27 bp):
AATAAAATAAAATAATACAAAATAAAA
Found at i:82615951 original size:13 final size:13
Alignment explanation
Indices: 82615933--82615957 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82615923 AACGAAGACA
82615933 GACATGGCCGTGT
1 GACATGGCCGTGT
82615946 GACATGGCCGTG
1 GACATGGCCGTG
82615958 GGCAAACATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
GACATGGCCGTGT
Found at i:82627373 original size:21 final size:22
Alignment explanation
Indices: 82627334--82627379 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
82627324 GTACTTTTTA
* *
82627334 TTTAATTTTCCTTTATTATTAT
1 TTTAATTTTACTTTATTATAAT
*
82627356 TTTAATTTTAGTTT-TTATAAT
1 TTTAATTTTACTTTATTATAAT
82627377 TTT
1 TTT
82627380 TATTGAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTAATTTTACTTTATTATAAT
Found at i:82628474 original size:2 final size:2
Alignment explanation
Indices: 82628467--82628503 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
82628457 GTTCTTAAAA
82628467 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82628504 CTTCAACACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82647131 original size:40 final size:39
Alignment explanation
Indices: 82647019--82647123 Score: 183
Period size: 39 Copynumber: 2.7 Consensus size: 39
82647009 GAATGTTCGA
82647019 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
82647058 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
82647097 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
82647124 CTTTGTGCGG
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
39 53 0.85
40 9 0.15
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:82655051 original size:38 final size:39
Alignment explanation
Indices: 82654999--82655141 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
82654989 GAATGTTCGA
82654999 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
82655038 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
82655076 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
82655115 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
82655142 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:82655087 original size:77 final size:79
Alignment explanation
Indices: 82655000--82655181 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
82654990 AATGTTCGAG
82655000 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
82655063 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
82655077 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
82655142 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
82655156 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
82655182 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:82663168 original size:46 final size:46
Alignment explanation
Indices: 82663118--82663339 Score: 290
Period size: 46 Copynumber: 4.8 Consensus size: 46
82663108 TGGTTGAGCA
*
82663118 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
82663164 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
82663210 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
82663255 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
82663303 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82663340 GCGGGTTACA
Statistics
Matches: 153, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
45 3 0.02
46 106 0.69
47 28 0.18
48 3 0.02
50 4 0.03
51 3 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:82663287 original size:93 final size:93
Alignment explanation
Indices: 82663164--82663332 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
82663154 GATGCGAATG
* *
82663164 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGA
82663229 GTCCGAGTTCGTGAGATGTAACTAGGCA
66 GTCCGAGTTCGTGAGATGTAACTAGGCA
* *
82663257 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGA
82663322 GTCCGAGTTCG
66 GTCCGAGTTCG
82663333 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGA
GTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:82674904 original size:39 final size:40
Alignment explanation
Indices: 82674745--82675007 Score: 288
Period size: 40 Copynumber: 6.7 Consensus size: 40
82674735 GGATATAACC
* * * * *
82674745 ACTCACAC-AAGGCCGTCGGGCCTTAGCCCGG-ATATGGTC
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
82674784 ACT-AGCACAAATGTCTTCAGGACTTAGCCCGG-ATATAGTA
1 ACTCA-CACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
82674824 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
** *
82674864 ACTCGTACAAATGCCTTCGGGAGTT-GCCCGGAATTAGTA
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
82674903 ACTCACACAAATACCTTCGGGACTT-GCCCGAAATTAGTA
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
82674942 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
82674982 ACT-AGCACAAATGTCTTCGAGACTTA
1 ACTCA-CACAAATGCCTTCGGGACTTA
82675008 ACCCCGTTAG
Statistics
Matches: 195, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 79 0.41
40 113 0.58
41 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:82674914 original size:79 final size:80
Alignment explanation
Indices: 82674745--82675007 Score: 295
Period size: 79 Copynumber: 3.3 Consensus size: 80
82674735 GGATATAACC
* * * * * * * *
82674745 ACTCACAC-AAGGCCGTCGGGCCTTAGCCCGG-ATATGGTCACTAGCACAAATGTCTTCAGGACT
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACT
82674808 TAGCCCGG-ATATAGTA
65 TAGCCCGGAAT-TAGTA
* * *
82674824 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGTACAAATGCCTTCGGGAGTT
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTT
82674889 -GCCCGGAATTAGTA
66 AGCCCGGAATTAGTA
* * *
82674903 ACTCACACAAATACCTTCGGGACTT-GCCCGAAATTAGTAACTCACACAAATGCCTTCGGGACTT
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTT
* *
82674967 AGCCCGGAATTAATC
66 AGCCCGGAATTAGTA
* *
82674982 ACT-AGCACAAATGTCTTCGAGACTTA
1 ACTCA-CACAAATGCCTTCGGGACTTA
82675008 ACCCCGTTAG
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
78 36 0.23
79 73 0.47
80 45 0.29
81 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (80 bp):
ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGAATTAGTA
Found at i:82683149 original size:39 final size:40
Alignment explanation
Indices: 82683011--82683255 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
82683001 GCCGTCAGGC
* * * * *
82683011 CTTAGCCCGG-ATATGGTCACTAGCACAAATGTCTTTGGGA
1 CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGA
82683051 CTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA
1 CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGA
*
82683091 CTTAGCCCGGAATTAGTAACTTGCACAAATGCCTTCGGGA
1 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA
* *
82683131 CTT-GCCCGGAATTAGTAACTCACACAAATACCTTCGGGA
1 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA
*
82683170 CTT-GCCCGGAATTAGCAACTCGCACAATTAATGCCTTCGGGA
1 CTTAGCCCGGAATTAGTAACTCGCAC-A--AATGCCTTCGGGA
* * * *
82683212 CTTAGCCCGGAATTAATCACTAGCACAAATGTCTTCGGGA
1 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA
82683252 CTTA
1 CTTA
82683256 ACCCCGTTAG
Statistics
Matches: 182, Mismatches: 17, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 57 0.31
40 87 0.48
41 4 0.02
42 16 0.09
43 18 0.10
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA
Found at i:82692267 original size:6 final size:6
Alignment explanation
Indices: 82692256--82692283 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
82692246 TTTATGTAAG
82692256 AAAACA AAAACA AAAACA AAAACA AAAA
1 AAAACA AAAACA AAAACA AAAACA AAAA
82692284 AAATTCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACA
Found at i:82693666 original size:131 final size:131
Alignment explanation
Indices: 82693526--82693912 Score: 516
Period size: 118 Copynumber: 3.0 Consensus size: 131
82693516 CAAACTCTTA
82693526 ATTTTTTTTCTTTTAAAAACATGTTTATATGAAATCAAATACGATGTATTGCTCAAATTCAATGA
1 ATTTTTTTTCTTTTAAAAACATGTTTATATGAAATCAAATACGATGTATTGCTCAAATTCAATGA
82693591 ATTTTCATGTGTAAAAAGAATTTCAGAAAAAAATCAACAAGATGATCAATGTATGATTTATGCAC
66 ATTTTCATGTGTAAAAAGAATTTCAGAAAAAAATCAACAAGATGATCAATGTATGATTTATGCAC
82693656 T
131 T
82693657 ATTTTTTTTCTTTTAAAAACATGTTTATATGAAATCAAATACGATGTATTGCTCAAATTCAATGA
1 ATTTTTTTTCTTTTAAAAACATGTTTATATGAAATCAAATACGATGTATTGCTCAAATTCAATGA
* * ** * ** ** ** * *
82693722 ATTTTCATGTGT-AAAA-AA--T---AAAATAAGCTTTCACG--GCCCTTTCCA-AACTCT-T--
66 ATTTTCATGTGTAAAAAGAATTTCAGAAAAAAATC-AACAAGATGATCAATGTATGA-TTTATGC
82693774 A--
129 ACT
82693775 ATTTTTTTTCTTTTAAAAACATGTTTATATGAAATCAAATACGATGTATTGCTCAAATTCAATGA
1 ATTTTTTTTCTTTTAAAAACATGTTTATATGAAATCAAATACGATGTATTGCTCAAATTCAATGA
*
82693840 ATTTTCATGTGTAAAAAGAATTTCAGAAAAAAAATCAACAAGATGGTCAATGTATGATTTATGCA
66 ATTTTCATGTGTAAAAAGAATTTCAG-AAAAAAATCAACAAGATGATCAATGTATGATTTATGCA
82693905 CT
130 CT
82693907 ATTTTT
1 ATTTTT
82693913 ATAGACTAAT
Statistics
Matches: 212, Mismatches: 26, Indels: 35
0.78 0.10 0.13
Matches are distributed among these distances:
118 77 0.36
119 4 0.02
120 3 0.01
122 3 0.01
123 6 0.03
124 7 0.03
125 6 0.03
126 7 0.03
127 7 0.03
128 2 0.01
129 2 0.01
130 5 0.02
131 77 0.36
132 6 0.03
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.39
Consensus pattern (131 bp):
ATTTTTTTTCTTTTAAAAACATGTTTATATGAAATCAAATACGATGTATTGCTCAAATTCAATGA
ATTTTCATGTGTAAAAAGAATTTCAGAAAAAAATCAACAAGATGATCAATGTATGATTTATGCAC
T
Found at i:82702933 original size:20 final size:20
Alignment explanation
Indices: 82702908--82703013 Score: 81
Period size: 20 Copynumber: 5.3 Consensus size: 20
82702898 TAAATGTATT
82702908 TAGGGGTACCAAAGTACAAA
1 TAGGGGTACCAAAGTACAAA
* *
82702928 TAGGGGCA-CATATGTGA-AAA
1 TAGGGGTACCA-AAGT-ACAAA
*
82702948 TAGGGGTACCGAAGTACAAA
1 TAGGGGTACCAAAGTACAAA
* * ** * *
82702968 TAAGGGCACGTATGTGCAAA
1 TAGGGGTACCAAAGTACAAA
*
82702988 TAGGGGTACCGAAGTACAAA
1 TAGGGGTACCAAAGTACAAA
*
82703008 CAGGGG
1 TAGGGG
82703014 CACATATGTG
Statistics
Matches: 64, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
19 3 0.05
20 59 0.92
21 2 0.03
ACGTcount: A:0.39, C:0.14, G:0.31, T:0.16
Consensus pattern (20 bp):
TAGGGGTACCAAAGTACAAA
Found at i:82703024 original size:40 final size:40
Alignment explanation
Indices: 82702908--82703027 Score: 195
Period size: 40 Copynumber: 3.0 Consensus size: 40
82702898 TAAATGTATT
* *
82702908 TAGGGGTACCAAAGTACAAATAGGGGCACATATGTGAAAA
1 TAGGGGTACCGAAGTACAAATAGGGGCACATATGTGCAAA
* *
82702948 TAGGGGTACCGAAGTACAAATAAGGGCACGTATGTGCAAA
1 TAGGGGTACCGAAGTACAAATAGGGGCACATATGTGCAAA
*
82702988 TAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAA
1 TAGGGGTACCGAAGTACAAATAGGGGCACATATGTGCAAA
82703028 CATTCAATAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.39, C:0.15, G:0.29, T:0.17
Consensus pattern (40 bp):
TAGGGGTACCGAAGTACAAATAGGGGCACATATGTGCAAA
Found at i:82703029 original size:20 final size:20
Alignment explanation
Indices: 82702924--82703027 Score: 82
Period size: 20 Copynumber: 5.2 Consensus size: 20
82702914 TACCAAAGTA
82702924 CAAATAGGGGCACATATGTG
1 CAAATAGGGGCACATATGTG
* * ** * *
82702944 AAAATAGGGGTACCGAAGTA
1 CAAATAGGGGCACATATGTG
* *
82702964 CAAATAAGGGCACGTATGTG
1 CAAATAGGGGCACATATGTG
* ** * *
82702984 CAAATAGGGGTACCGAAGTA
1 CAAATAGGGGCACATATGTG
*
82703004 CAAACAGGGGCACATATGTG
1 CAAATAGGGGCACATATGTG
82703024 CAAA
1 CAAA
82703028 CATTCAATAA
Statistics
Matches: 59, Mismatches: 25, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.39, C:0.15, G:0.29, T:0.16
Consensus pattern (20 bp):
CAAATAGGGGCACATATGTG
Found at i:82712416 original size:83 final size:83
Alignment explanation
Indices: 82712259--82712429 Score: 211
Period size: 83 Copynumber: 2.1 Consensus size: 83
82712249 TAATCCGACT
* * * * *
82712259 GTGTGTCCCTTGCACCATAATTATGCAAAACAGAATGCCCAGTACTTAAAACATGGGCAGAGACA
1 GTGTGTCCCCTACACCATAATTATACAAAACAGAATGCCCAGTACGTAAAACATGGGCAAAGACA
*
82712324 CAACTGTGTGTCTCAGCC
66 CAACCGTGTGTCTCAGCC
* * *
82712342 GTGTGTCCCCTACACCCTAATTATACAAAACAGAATGCCCAGTA-GTAAACACACT-GGTAAAGT
1 GTGTGTCCCCTACACCATAATTATACAAAACAGAATGCCCAGTACGTAAA-ACA-TGGGCAAAGA
**
82712405 CACGGCCGTGTGTCTCAGCC
64 CACAACCGTGTGTCTCAGCC
82712425 GTGTG
1 GTGTG
82712430 AAGGACACGG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
82 4 0.05
83 70 0.93
84 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (83 bp):
GTGTGTCCCCTACACCATAATTATACAAAACAGAATGCCCAGTACGTAAAACATGGGCAAAGACA
CAACCGTGTGTCTCAGCC
Found at i:82716434 original size:20 final size:20
Alignment explanation
Indices: 82716409--82716449 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
82716399 TTTGCTAAGT
82716409 TAATAGAAAAATTTTATTGA
1 TAATAGAAAAATTTTATTGA
82716429 TAATAGAAAAATTTTATTGA
1 TAATAGAAAAATTTTATTGA
82716449 T
1 T
82716450 TTAATTTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (20 bp):
TAATAGAAAAATTTTATTGA
Found at i:82718921 original size:49 final size:49
Alignment explanation
Indices: 82718868--82718965 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
82718858 TTCAAGAAAC
82718868 TCCATCAAAAATAGAATTTAAAAAAT-ATGTAAAATGCCTTACTCCAATT
1 TCCATCAAAAATAGAATTT-AAAAATGATGTAAAATGCCTTACTCCAATT
82718917 TCCATCAAAAATAGAATTTAAAAATGATGTAAAATGCCTTACTCCAATT
1 TCCATCAAAAATAGAATTTAAAAATGATGTAAAATGCCTTACTCCAATT
82718966 GATGATTAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
48 6 0.12
49 42 0.88
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.31
Consensus pattern (49 bp):
TCCATCAAAAATAGAATTTAAAAATGATGTAAAATGCCTTACTCCAATT
Found at i:82722699 original size:47 final size:46
Alignment explanation
Indices: 82722640--82722786 Score: 159
Period size: 47 Copynumber: 3.1 Consensus size: 46
82722630 CATACATATC
* * ** *
82722640 TCACATTAGCCATTCGGCTTTCCCACATATATACACTTCCACGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACACTT-CACATTCA
** * * *
82722687 TCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACATATATACA-CTTCACATTCA
* *
82722734 TCACATTGGCCATTCGGCCTTATCAGATATATACACATTCACATCCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACAC-TTCACATTCA
82722781 TCACAT
1 TCACAT
82722787 AAAATCCTAA
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
47 79 0.98
48 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACACTTCACATTCA
Found at i:82726461 original size:28 final size:28
Alignment explanation
Indices: 82726430--82726580 Score: 133
Period size: 28 Copynumber: 5.3 Consensus size: 28
82726420 CTGATTGATT
*
82726430 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
82726458 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
* *
82726487 TCGCACACATAGTGCTTGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
82726515 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * *
82726544 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
*
82726572 TTGCACACA
1 TCGCACACA
82726581 CAATGCCTCA
Statistics
Matches: 94, Mismatches: 25, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
27 1 0.01
28 49 0.52
29 43 0.46
30 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:82726490 original size:29 final size:29
Alignment explanation
Indices: 82726457--82726558 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
82726447 GATTAAAGAA
82726457 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
** **
82726486 CTCGCACACATAGTG-CTTGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
82726514 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
82726543 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
82726559 TCGGTTGAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:82726497 original size:57 final size:57
Alignment explanation
Indices: 82726430--82726590 Score: 223
Period size: 57 Copynumber: 2.8 Consensus size: 57
82726420 CTGATTGATT
* * *
82726430 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* **
82726487 TCGCACACATAGTGCTTGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * *
82726544 TGGCACACATAGTGCTCGGTTGAAGAACTTGCACACACAATGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
82726591 TGATTCCAGC
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:82726668 original size:40 final size:40
Alignment explanation
Indices: 82726598--82726951 Score: 568
Period size: 40 Copynumber: 8.9 Consensus size: 40
82726588 TCATGATTCC
*
82726598 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* *
82726637 AGCACGAATGCTTTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * *
82726677 AGCACGAATGCTCTTCAGGATTTAGCCCGGATATATTACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
82726717 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
82726757 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
82726797 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
82726837 AGCACGAATGCTCTTTGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
82726877 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
82726917 AGCACGAATGCTCTTCAGGACTTAACCCGGATATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
82726952 ACATACTGAA
Statistics
Matches: 290, Mismatches: 23, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.04
40 277 0.96
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:82728488 original size:47 final size:47
Alignment explanation
Indices: 82728437--82728557 Score: 127
Period size: 47 Copynumber: 2.6 Consensus size: 47
82728427 GCTTTCCCAC
* *
82728437 ATATATACACT-TCCACGTTCATCACATTGGCCATTCTGCCTTATCAA
1 ATATATACA-TGTCCACATTCATCACATTGGCCATTCGGCCTTATCAA
* * * * *
82728484 ATATATGCATGTTCACATTTATCACATTGGCCATTCGGTCTTATCAC
1 ATATATACATGTCCACATTCATCACATTGGCCATTCGGCCTTATCAA
* * * *
82728531 ATATATACTTATTCACATCCATCACAT
1 ATATATACATGTCCACATTCATCACAT
82728558 AAAATCCTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
46 1 0.02
47 60 0.98
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.36
Consensus pattern (47 bp):
ATATATACATGTCCACATTCATCACATTGGCCATTCGGCCTTATCAA
Found at i:82738089 original size:44 final size:44
Alignment explanation
Indices: 82738026--82738114 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
82738016 CAGAACCAAC
* *
82738026 TTCCAACACGCACAAACATGACCATAAATTGATTCTATATATCA
1 TTCCAACACACACAAACATGACCATAAATTCATTCTATATATCA
82738070 TTCCAACACACACAAACATGACCATAAATTCATTCTATATATCA
1 TTCCAACACACACAAACATGACCATAAATTCATTCTATATATCA
82738114 T
1 T
82738115 ACATTTTTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.42, C:0.26, G:0.04, T:0.28
Consensus pattern (44 bp):
TTCCAACACACACAAACATGACCATAAATTCATTCTATATATCA
Found at i:82744702 original size:130 final size:130
Alignment explanation
Indices: 82744511--82744770 Score: 495
Period size: 130 Copynumber: 2.0 Consensus size: 130
82744501 CTAGATAAAG
82744511 ATTTATGGGCTTATAGTACTGCATTTAAAACACCATCGGGAATGTCACCTTTTAAGCTTTTCTAT
1 ATTTATGGGCTTATAGTACTGCATTTAAAACACCATCGGGAATGTCACCTTTTAAGCTTTTCTAT
*
82744576 GGAAAGCCATGTCACCTACCTATTGAACTAGAGCACAAGGCCA-TTTGGGCCATTAAAAAGTTGA
66 GGAAAGCCATGTCACCTACCTATTGAACTAGACCACAAGG-CATTTTGGGCCATTAAAAAGTTGA
82744640 A
130 A
82744641 ATTTATGGGCTTATAGTACTGCATTTAAAACACCATCGGGAATGTCACCTTTTAAGCTTTTCTAT
1 ATTTATGGGCTTATAGTACTGCATTTAAAACACCATCGGGAATGTCACCTTTTAAGCTTTTCTAT
82744706 GGAAAGCCATGTCACCTACCTATTGAACTAGACCACAAGGCATTTTGGGCCATTAAAAAGTTGAA
66 GGAAAGCCATGTCACCTACCTATTGAACTAGACCACAAGGCATTTTGGGCCATTAAAAAGTTGAA
82744771 TATGGATTGG
Statistics
Matches: 128, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
129 2 0.02
130 126 0.98
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (130 bp):
ATTTATGGGCTTATAGTACTGCATTTAAAACACCATCGGGAATGTCACCTTTTAAGCTTTTCTAT
GGAAAGCCATGTCACCTACCTATTGAACTAGACCACAAGGCATTTTGGGCCATTAAAAAGTTGAA
Found at i:82748633 original size:40 final size:40
Alignment explanation
Indices: 82748525--82748634 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
82748515 ATTGAATGAT
* * * * *
82748525 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
82748565 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
82748605 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
82748635 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:82748649 original size:40 final size:39
Alignment explanation
Indices: 82748525--82748674 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
82748515 ATTGAATGAT
* * * * * * *
82748525 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
82748565 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
82748605 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
82748645 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
82748675 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:82750803 original size:60 final size:60
Alignment explanation
Indices: 82750678--82750863 Score: 155
Period size: 60 Copynumber: 3.1 Consensus size: 60
82750668 GTCACTGCCA
* * * * * * ***
82750678 TGTGTCCCATAACACATGCCCGTGTGGAATCTCT-A-GGCCCCAAATCAGTCACACCACTG
1 TGTGTCCCATAACACACGCCAGTGTGGAAGCCCTAATTG-CCCAAAGCAGTCACATGGCTG
* * * * ** *
82750737 TATGTCCCGA-AGCACATGCCAGTGTGGGAA-CCCTAATTTCCCAACTCAGTTACATGGCTG
1 TGTGTCCC-ATAACACACGCCAGTGT-GGAAGCCCTAATTGCCCAAAGCAGTCACATGGCTG
* *
82750797 TGTGTCCCATAACACACGCCCGTGTGGAAGCCCTAATTGCCCAAAGCAGTCACATGGCTA
1 TGTGTCCCATAACACACGCCAGTGTGGAAGCCCTAATTGCCCAAAGCAGTCACATGGCTG
82750857 TGTGTCC
1 TGTGTCC
82750864 AATGGACACG
Statistics
Matches: 101, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
59 28 0.28
60 73 0.72
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (60 bp):
TGTGTCCCATAACACACGCCAGTGTGGAAGCCCTAATTGCCCAAAGCAGTCACATGGCTG
Found at i:82759318 original size:36 final size:36
Alignment explanation
Indices: 82759271--82759356 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 36
82759261 AATATTACAA
* * *
82759271 CCGAAACACACCATATGCTCATGA-GAGCTAATCCAT
1 CCGAAACACACCAGATGCTCAT-ACGAGCCAATCCAC
82759307 CCGAAACACACCAGATGCTCATACGAGCCAATCCAC
1 CCGAAACACACCAGATGCTCATACGAGCCAATCCAC
*
82759343 CCTATAACACACCA
1 CCGA-AACACACCA
82759357 ATGGCCTCCA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
35 1 0.02
36 34 0.77
37 9 0.20
ACGTcount: A:0.37, C:0.36, G:0.12, T:0.15
Consensus pattern (36 bp):
CCGAAACACACCAGATGCTCATACGAGCCAATCCAC
Found at i:82770847 original size:9 final size:9
Alignment explanation
Indices: 82770833--82770867 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
82770823 AGGCCCAAAT
82770833 TATTATTAC
1 TATTATTAC
*
82770842 TATTATCAC
1 TATTATTAC
*
82770851 TACTATTAC
1 TATTATTAC
82770860 TATTATTA
1 TATTATTA
82770868 AATACTATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.51
Consensus pattern (9 bp):
TATTATTAC
Found at i:82771423 original size:152 final size:153
Alignment explanation
Indices: 82771215--82771614 Score: 526
Period size: 152 Copynumber: 2.6 Consensus size: 153
82771205 TTTTTTAAAT
* * *
82771215 GAGAAAGATTAGATTTTGAAGAAATAAA-AATCT-ATTTTTTAGTTATCTTAAAGGAAAGTTTAA
1 GAGAAAGTTTAGATTTTGAA-AAATAAATAATCTGTTTTTTTAGTTATTTTAAAGGAAAGTTTAA
* * *
82771278 ATTTTTAAAACAAAATTTTTATTTGTTTTTCAACTATTTCAAAGTAAAAACTTTAATATTTAAG-
65 ATTTTTAAAACAAAGTTTTTATTT-TTTTT-AACTACTTCAAAATAAAAACTTTAATATTTAAGA
82771342 AAAATAATGTA-TTTTTTAAAAAAAA
128 AAAATAATGTATTTTTTTAAAAAAAA
82771367 GAGAAA-TTTAGATTTTGAAAAATAAATAAT-TGTTTTTTGTAGTTATTTTAAAGGAAAGTTTAA
1 GAGAAAGTTTAGATTTTGAAAAATAAATAATCTGTTTTTT-TAGTTATTTTAAAGGAAAGTTTAA
* *
82771430 ATTTTTAAAACAAAGTTTTTATTTTTTTTAACTACTTCAAAATAAAAGCTTTAATCTTTAAGAAA
65 ATTTTTAAAACAAAGTTTTTATTTTTTTTAACTACTTCAAAATAAAAACTTTAATATTTAAG-AA
* **
82771495 AAATAGTGTATTTTTTTTTAAAAAAGG
129 AAATAATGTA--TTTTTTTAAAAAAAA
* **
82771522 GAGAAAGTTTAGAATTTGAAAAATAAAT-ATCTGTTTTTTTTAAGACATTTTAAAGGAAAGTTTA
1 GAGAAAGTTTAGATTTTGAAAAATAAATAATCTG-TTTTTTT-AGTTATTTTAAAGGAAAGTTTA
* *
82771586 ATTTTTTAAAACAAAGTTTTGATTTTTTT
64 AATTTTTAAAACAAAGTTTTTATTTTTTT
82771615 GTTAATTATT
Statistics
Matches: 220, Mismatches: 16, Indels: 19
0.86 0.06 0.07
Matches are distributed among these distances:
150 37 0.17
151 25 0.11
152 62 0.28
155 20 0.09
156 23 0.10
157 53 0.24
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.43
Consensus pattern (153 bp):
GAGAAAGTTTAGATTTTGAAAAATAAATAATCTGTTTTTTTAGTTATTTTAAAGGAAAGTTTAAA
TTTTTAAAACAAAGTTTTTATTTTTTTTAACTACTTCAAAATAAAAACTTTAATATTTAAGAAAA
ATAATGTATTTTTTTAAAAAAAA
Found at i:82771620 original size:33 final size:34
Alignment explanation
Indices: 82771583--82771646 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
82771573 AAAGGAAAGT
*
82771583 TTAATT-TTTTAAAACAAAGTTTTGATTTTTTTG
1 TTAATTATTTCAAAACAAAGTTTTGATTTTTTTG
* * *
82771616 TTAATTATTTCGAAATAAGGTTTTGATTTTT
1 TTAATTATTTCAAAACAAAGTTTTGATTTTT
82771647 AAGAAAAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 6 0.23
34 20 0.77
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.56
Consensus pattern (34 bp):
TTAATTATTTCAAAACAAAGTTTTGATTTTTTTG
Found at i:82775684 original size:14 final size:14
Alignment explanation
Indices: 82775665--82775694 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
82775655 ATACTTTATC
82775665 ATGCTAAATTCATA
1 ATGCTAAATTCATA
82775679 ATGCTAAATTCATA
1 ATGCTAAATTCATA
82775693 AT
1 AT
82775695 CAATTTATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (14 bp):
ATGCTAAATTCATA
Found at i:82777423 original size:23 final size:23
Alignment explanation
Indices: 82777337--82777434 Score: 98
Period size: 22 Copynumber: 4.3 Consensus size: 23
82777327 CAACTAATTG
*
82777337 GAGCTTACCGT-TTCAGCTC-GTA
1 GAGCTTACC-TATTCAGCTCAATA
*
82777359 TGAGCTTA-CTATTCAACTCAATA
1 -GAGCTTACCTATTCAGCTCAATA
82777382 GAGCTTA-CTATTCAGCTCAATA
1 GAGCTTACCTATTCAGCTCAATA
*
82777404 GAGCTTACCGT-TTCAGCTCATTA
1 GAGCTTACC-TATTCAGCTCAATA
*
82777427 GAACTTAC
1 GAGCTTAC
82777435 TGTTCATCAA
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.02
22 36 0.55
23 28 0.42
24 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (23 bp):
GAGCTTACCTATTCAGCTCAATA
Found at i:82779122 original size:30 final size:30
Alignment explanation
Indices: 82779088--82779147 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
82779078 TATTTTATTA
82779088 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
82779118 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
82779148 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:82779837 original size:70 final size:67
Alignment explanation
Indices: 82779756--82779888 Score: 176
Period size: 70 Copynumber: 1.9 Consensus size: 67
82779746 TCCGAATAAG
** *
82779756 AAAAGGCAAAACTACGTCATTTTGATAAATGTTTACCTTTTCTAAAGTTAAAAGTCAAAACCATT
1 AAAAGGCAAAACTACGTCATTTTGATAAATGTTTA-CTAAT-T-AAGTTAAAAGGCAAAACCATT
82779821 AAGTT
63 AAGTT
* * **
82779826 AAAAGGTAAAACTATGTTGTTTTGATAAATGTTTACTAATTAAGTTAAAAGGCAAAACCATTA
1 AAAAGGCAAAACTACGTCATTTTGATAAATGTTTACTAATTAAGTTAAAAGGCAAAACCATTA
82779889 TATTGTTTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
67 21 0.38
68 1 0.02
69 3 0.05
70 31 0.55
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (67 bp):
AAAAGGCAAAACTACGTCATTTTGATAAATGTTTACTAATTAAGTTAAAAGGCAAAACCATTAAG
TT
Found at i:82780706 original size:14 final size:14
Alignment explanation
Indices: 82780687--82780713 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
82780677 ATTTATAAGT
82780687 TTATTATATATATA
1 TTATTATATATATA
82780701 TTATTATATATAT
1 TTATTATATATAT
82780714 TTTTAATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTATATATATA
Found at i:82780995 original size:16 final size:17
Alignment explanation
Indices: 82780964--82780998 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
82780954 AGGCCTAGGG
82780964 TTTAGTGGTTTAGGGTT
1 TTTAGTGGTTTAGGGTT
*
82780981 TTTAG-GGTTTTGGGTT
1 TTTAGTGGTTTAGGGTT
82780997 TT
1 TT
82780999 AGTATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.57
Consensus pattern (17 bp):
TTTAGTGGTTTAGGGTT
Found at i:82781352 original size:126 final size:126
Alignment explanation
Indices: 82781127--82781561 Score: 699
Period size: 126 Copynumber: 3.5 Consensus size: 126
82781117 ATTAACTATT
*
82781127 AATTACGGAAAAAAGCTCCCACGTGGACGCTTTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
* * *
82781192 GAGAAGATGTTTCTGAACGAATAGTGTCAAAAATGCTTCAAGAAGGATACACTGTCAGCAA
66 GAGAAGATGTTTTTGAACAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGCAA
* * *
82781253 AATTACGGAAAAAAGCTCCCACATGGATGCTCTTTTACTACAGTAGTATCTGAAAAAATAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
* *
82781318 GAGAAGATGTTTTTGAATAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGTAA
66 GAGAAGATGTTTTTGAACAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGCAA
* * * *
82781379 AATTACGGAAAACAGCTCTCACGTGGGCGCTCTTTTGCTACAGTAGTATCTGAAAAATTAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
*
82781444 GAGAAGATGTTTTTGAACAAATAGTGTCAAAAATACTTCAAGAAGGATGCACTGTCAGCAA
66 GAGAAGATGTTTTTGAACAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGCAA
* * ** *
82781505 AATTAAGGAAAAAATCTCTTACGTGGACGCTCTTTTGCTACAGTAGTATTTGAAAAA
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAA
82781562 GACTTAGACT
Statistics
Matches: 284, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 284 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (126 bp):
AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
GAGAAGATGTTTTTGAACAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGCAA
Found at i:82784934 original size:40 final size:40
Alignment explanation
Indices: 82784832--82785015 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
82784822 AAATTGAATG
* * * * *
82784832 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
82784872 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
82784912 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
82784952 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
82784992 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
82785016 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:82788235 original size:130 final size:130
Alignment explanation
Indices: 82787795--82788296 Score: 739
Period size: 128 Copynumber: 3.9 Consensus size: 130
82787785 ACATTTATTT
* * *
82787795 TAATAAAAATTATTAGCTAATTTAAAAGAACATTTATTGTATTAAAATTAAAAAAAGT-AAGTAC
1 TAATAAAAAATATTAGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
* * **
82787859 AATTAAAATATTAAAAACAACTTTTATTTTATTATTTAAAACTATATAAAAAACAAATATAAAAA
66 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTCAAACTATATAAAAATTAAATATAAAAA
* *
82787924 TAAT-AAAAATATTGGCTAATTTAAAATAACATTTATTTTAATAAAATTAAAAAAA-TAAAGTAC
1 TAATAAAAAATATTAGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
* *
82787987 AATTAAAATATTAAAAACAACTTTTATTTTATCAATTCAAACTATATAAAAATTAAATACAAAAA
66 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTCAAACTATATAAAAATTAAATATAAAAA
* * * *
82788052 -AACAAAAAATATT-TCTTAATTTAAAAGAAAATTTATTTTAATAAAACTAAAAAAAGTAAAGTA
1 TAATAAAAAATATTAGC-TAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTA
82788115 CAATTAAAATATTAAAAACAACTTTTATTTTATTAATTCAAACTATATAAAAATTAAATATAAAA
65 CAATTAAAATATTAAAAACAACTTTTATTTTATTAATTCAAACTATATAAAAATTAAATATAAAA
82788180 A
130 A
* *
82788181 TAATAAAAAATATT-TCTTAATTTAAAAGAACATTTATTTTAATAAAAGTAAAAAAAGTAAAGTA
1 TAATAAAAAATATTAGC-TAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTA
* * * *
82788245 CAATTAAAATAATAAAAACAATTTTTATTTTATT-ATATGAAACCATATAAAA
65 CAATTAAAATATTAAAAACAACTTTTATTTTATTAAT-TCAAACTATATAAAA
82788297 TAAGTTTCTA
Statistics
Matches: 342, Mismatches: 25, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
127 4 0.01
128 156 0.46
129 77 0.23
130 105 0.31
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (130 bp):
TAATAAAAAATATTAGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
AATTAAAATATTAAAAACAACTTTTATTTTATTAATTCAAACTATATAAAAATTAAATATAAAAA
Found at i:82789376 original size:7 final size:7
Alignment explanation
Indices: 82789364--82789389 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
82789354 TTATATAGGT
82789364 AATACTA
1 AATACTA
82789371 AATACTA
1 AATACTA
82789378 AATACTA
1 AATACTA
82789385 AATAC
1 AATAC
82789390 GAAACGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:82801335 original size:29 final size:29
Alignment explanation
Indices: 82801273--82801345 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
82801263 CCTCCGAGAT
** * * *
82801273 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
82801302 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82801331 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
82801346 GATCTCGTCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.34, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:82809151 original size:29 final size:29
Alignment explanation
Indices: 82809119--82809196 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
82809109 ATACCCTCCG
** *
82809119 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
82809148 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
82809177 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
82809197 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:82811195 original size:37 final size:37
Alignment explanation
Indices: 82811136--82811233 Score: 110
Period size: 37 Copynumber: 2.7 Consensus size: 37
82811126 ATCGGTATAT
* * *
82811136 ATATATTGAAATGTG-TCTTGGAAATGATATTTACTTG
1 ATATATTGAAAAGTGAT-ATGGAAATGATATTTACTTA
* *
82811173 ATATATTGAAACGTGATATGGAAATGATATTTATTTA
1 ATATATTGAAAAGTGATATGGAAATGATATTTACTTA
* *
82811210 ATATATT-AAAAGTGACATGTAAAT
1 ATATATTGAAAAGTGATATGGAAAT
82811234 ATGTGATTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
36 14 0.26
37 38 0.72
38 1 0.02
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (37 bp):
ATATATTGAAAAGTGATATGGAAATGATATTTACTTA
Found at i:82813491 original size:36 final size:36
Alignment explanation
Indices: 82813451--82813524 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
82813441 TATTATACTT
*
82813451 AATTTTAAATAATATATCAAACAAAGTTTATAAATC
1 AATTTTAAATAATATATCAAACAAAATTTATAAATC
* *
82813487 AATTTTAAATAATGTATCAAGCAAAATTTATAAATC
1 AATTTTAAATAATATATCAAACAAAATTTATAAATC
82813523 AA
1 AA
82813525 ATTCAATACT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.35
Consensus pattern (36 bp):
AATTTTAAATAATATATCAAACAAAATTTATAAATC
Found at i:82816138 original size:19 final size:18
Alignment explanation
Indices: 82816103--82816138 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
82816093 TAAATTTTCA
*
82816103 TCAAATCAACTCTAAAAC
1 TCAAATCAACACTAAAAC
82816121 TCAAATCAAACACTAAAA
1 TCAAATC-AACACTAAAA
82816139 ACAGCATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.56, C:0.25, G:0.00, T:0.19
Consensus pattern (18 bp):
TCAAATCAACACTAAAAC
Found at i:82825740 original size:43 final size:41
Alignment explanation
Indices: 82825692--82825805 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 41
82825682 GAACATGACA
*
82825692 TTTAGCGTCGCTTTCTCCACAAACGCCGCTAAAAACCATA-ACC
1 TTTAGCGGCGCTTT-TCCACAAACGCCGCTAAAAA--ATAGACC
* * * * *
82825735 TTTAGCGGCGCTTTTCCCACAAACACTGCTATAGAGTAGACC
1 TTTAGCGGCGCTTTT-CCACAAACGCCGCTAAAAAATAGACC
82825777 TTTAGCGGCGCTTTTCTCACAAACGCCGC
1 TTTAGCGGCGCTTTTC-CACAAACGCCGC
82825806 CAAAGAACAA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 3 0.05
42 29 0.48
43 28 0.47
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.25
Consensus pattern (41 bp):
TTTAGCGGCGCTTTTCCACAAACGCCGCTAAAAAATAGACC
Done.