Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 273 of 335
Found at i:82825893 original size:7 final size:7
Alignment explanation
Indices: 82825881--82825946 Score: 66
Period size: 7 Copynumber: 9.6 Consensus size: 7
82825871 AATATTATAC
82825881 TTTAATA
1 TTTAATA
82825888 TTTAATA
1 TTTAATA
*
82825895 TTTATTA
1 TTTAATA
82825902 TTT-ATA
1 TTTAATA
82825908 CTTTAATA
1 -TTTAATA
*
82825916 -TTATTTA
1 TTTA-ATA
*
82825923 TTTTA-A
1 TTTAATA
82825929 TTTAATA
1 TTTAATA
82825936 TTTAATA
1 TTTAATA
82825943 TTTA
1 TTTA
82825947 TTTTAATTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
6 10 0.21
7 33 0.69
8 5 0.10
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (7 bp):
TTTAATA
Found at i:82825932 original size:41 final size:40
Alignment explanation
Indices: 82825887--82825971 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 40
82825877 ATACTTTAAT
* *
82825887 ATTTAATATTTATTATTTATACTTTAA-TATTATTTAT-TTTA
1 ATTTAATATTTAATATTTAT--TTTAATTAATA-TTATGTTTA
82825928 ATTTAATATTTAATATTTATTTTAATTAATATTATGTTTA
1 ATTTAATATTTAATATTTATTTTAATTAATATTATGTTTA
82825968 ATTT
1 ATTT
82825972 TTGAAATTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
39 9 0.22
40 12 0.30
41 19 0.47
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (40 bp):
ATTTAATATTTAATATTTATTTTAATTAATATTATGTTTA
Found at i:82825958 original size:16 final size:16
Alignment explanation
Indices: 82825937--82825970 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
82825927 AATTTAATAT
82825937 TTAATATTTAT-TTTAA
1 TTAATA-TTATGTTTAA
82825953 TTAATATTATGTTTAA
1 TTAATATTATGTTTAA
82825969 TT
1 TT
82825971 TTTGAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTAATATTATGTTTAA
Found at i:82825967 original size:28 final size:28
Alignment explanation
Indices: 82825826--82825969 Score: 97
Period size: 28 Copynumber: 5.1 Consensus size: 28
82825816 AACATTTAAA
*
82825826 AATA-TTATTTTAATTAA-ATAATATTT
1 AATATTTATTTTAATTAATATTATATTT
* * *
82825852 ATTTTTTATTTCTATGATAAATATTATACTTT
1 AATATTTATTT-TA--ATTAATATTATA-TTT
82825884 AATATTTAATATTT-ATT-AT-TTATACTTT
1 AATATTT-AT-TTTAATTAATATTATA-TTT
*
82825912 AATA-TTA-TTTATTTTAAT-TTAATATTT
1 AATATTTATTTTA-ATTAATATT-ATATTT
*
82825939 AATATTTATTTTAATTAATATTATGTTT
1 AATATTTATTTTAATTAATATTATATTT
82825967 AAT
1 AAT
82825970 TTTTGAAATT
Statistics
Matches: 93, Mismatches: 10, Indels: 28
0.71 0.08 0.21
Matches are distributed among these distances:
24 3 0.03
26 5 0.05
27 19 0.20
28 34 0.37
29 8 0.09
30 6 0.06
31 5 0.05
32 8 0.09
33 3 0.03
34 2 0.02
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (28 bp):
AATATTTATTTTAATTAATATTATATTT
Found at i:82830096 original size:25 final size:23
Alignment explanation
Indices: 82830073--82830119 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
82830063 TCAATATATT
82830073 TTTATAT-TGAATAAATATAAATA
1 TTTATATATGAA-AAATATAAATA
* *
82830096 TTTATGTATGAAATATATAAATA
1 TTTATATATGAAAAATATAAATA
82830119 T
1 T
82830120 AAAATGATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (23 bp):
TTTATATATGAAAAATATAAATA
Found at i:82830588 original size:15 final size:15
Alignment explanation
Indices: 82830570--82830600 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82830560 ATACCAAAAA
*
82830570 CCATAATCCCTAAAC
1 CCATAATCCATAAAC
82830585 CCATAATCCATAAAC
1 CCATAATCCATAAAC
82830600 C
1 C
82830601 TTAAAATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.39, G:0.00, T:0.19
Consensus pattern (15 bp):
CCATAATCCATAAAC
Found at i:82830636 original size:7 final size:7
Alignment explanation
Indices: 82830624--82830663 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
82830614 TCATACACTT
82830624 TAAACCC
1 TAAACCC
*
82830631 TAAACCA
1 TAAACCC
*
82830638 TATACCC
1 TAAACCC
82830645 TAAACCC
1 TAAACCC
82830652 TAAACCC
1 TAAACCC
82830659 TAAAC
1 TAAAC
82830664 TATAATGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:82830646 original size:14 final size:14
Alignment explanation
Indices: 82830624--82830668 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
82830614 TCATACACTT
82830624 TAAACCCTAAACCA
1 TAAACCCTAAACCA
* *
82830638 TATACCCTAAACCC
1 TAAACCCTAAACCA
*
82830652 TAAACCCTAAACTA
1 TAAACCCTAAACCA
82830666 TAA
1 TAA
82830669 TGATAATTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:82830851 original size:14 final size:14
Alignment explanation
Indices: 82830834--82830879 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
82830824 CAAAACCCTA
*
82830834 AACCCCTAACACTT
1 AACCCCTAACACCT
82830848 AACCCCTAACACCT
1 AACCCCTAACACCT
*
82830862 AACCCTTAA-ACCCT
1 AACCCCTAACA-CCT
82830876 AACC
1 AACC
82830880 ATTAAACCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 1 0.03
14 28 0.97
ACGTcount: A:0.37, C:0.46, G:0.00, T:0.17
Consensus pattern (14 bp):
AACCCCTAACACCT
Found at i:82830878 original size:21 final size:21
Alignment explanation
Indices: 82830826--82830878 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
82830816 CATAAATCCA
*
82830826 AAACCCTAAACCCCTAACACTT
1 AAACCCT-AACACCTAACACTT
* *
82830848 AACCCCTAACACCTAACCCTT
1 AAACCCTAACACCTAACACTT
82830869 AAACCCTAAC
1 AAACCCTAAC
82830879 CATTAAACCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.40, C:0.43, G:0.00, T:0.17
Consensus pattern (21 bp):
AAACCCTAACACCTAACACTT
Found at i:82830910 original size:25 final size:25
Alignment explanation
Indices: 82830863--82830912 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
82830853 CTAACACCTA
* *
82830863 ACCCTTAAACCCTAACCATTAAACC
1 ACCCTTAAACCATAACCACTAAACC
82830888 ACCCTTAAACCATAATCC-CTAAACC
1 ACCCTTAAACCATAA-CCACTAAACC
82830913 CATAATCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (25 bp):
ACCCTTAAACCATAACCACTAAACC
Found at i:82830915 original size:15 final size:15
Alignment explanation
Indices: 82830893--82830927 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
82830883 AAACCACCCT
*
82830893 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
82830907 TAAACCCATAATCCA
1 TAAACCCATAATCCA
82830922 TAAACC
1 TAAACC
82830928 TTAAAATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:82830932 original size:22 final size:22
Alignment explanation
Indices: 82830888--82830932 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
82830878 CCATTAAACC
* *
82830888 ACCCTTAAACCATAATCCCTAA
1 ACCCATAAACCATAAACCCTAA
* *
82830910 ACCCATAATCCATAAACCTTAA
1 ACCCATAAACCATAAACCCTAA
82830932 A
1 A
82830933 ATAGTAACTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (22 bp):
ACCCATAAACCATAAACCCTAA
Found at i:82831295 original size:40 final size:40
Alignment explanation
Indices: 82831250--82831345 Score: 126
Period size: 40 Copynumber: 2.4 Consensus size: 40
82831240 CGGCACTTTC
**
82831250 TAAAAAGCGCCGCTAAATA-TGTA-CATATAGCGGCGTTTT
1 TAAAAAGCGCCGCTAAATACTCAATC-TATAGCGGCGTTTT
*
82831289 TAAAAAAGCGCCGCT-AATACTCAATCTTTAGCGGCGTTTT
1 T-AAAAAGCGCCGCTAAATACTCAATCTATAGCGGCGTTTT
82831329 TAAAAAGCGCCGCTAAA
1 TAAAAAGCGCCGCTAAA
82831346 GCCACTAAAG
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
39 18 0.36
40 31 0.62
41 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (40 bp):
TAAAAAGCGCCGCTAAATACTCAATCTATAGCGGCGTTTT
Found at i:82832785 original size:90 final size:89
Alignment explanation
Indices: 82832636--82832876 Score: 383
Period size: 90 Copynumber: 2.7 Consensus size: 89
82832626 ATTAAGGGAA
*
82832636 AAAACAAATATCAAATCACCATCCAAGGCACAATTAAGTGCCGGTTTATTTAAGAAACATAAAAA
1 AAAACAAATATCAAATCACCATCCAA-GCACAATTAAGTGCCCGTTTATTTAAGAAACATAAAAA
82832701 TTACAATTAATTCCACACCTTAAAAC
65 TTACAATTAATTCCACACCTT-AAAC
*
82832727 AAAACAAATATCAAATCACCATCCAAGCACAATTAAGTGCCCATTTATTTAAGAAACATAAAAAT
1 AAAACAAATATCAAATCACCATCCAAGCACAATTAAGTGCCCGTTTATTTAAGAAACATAAAAAT
* *
82832792 TATAATTAATTCCACTCCTTAAAC
66 TACAATTAATTCCACACCTTAAAC
* * * *
82832816 AAAACAAATATCAAATCACCATCCACGGCACAACTAAGTACCCGCTTATTTAAGAAACATA
1 AAAACAAATATCAAATCACCATCCA-AGCACAATTAAGTGCCCGTTTATTTAAGAAACATA
82832877 GTTATTAGCA
Statistics
Matches: 140, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
89 29 0.21
90 85 0.61
91 26 0.19
ACGTcount: A:0.47, C:0.22, G:0.07, T:0.24
Consensus pattern (89 bp):
AAAACAAATATCAAATCACCATCCAAGCACAATTAAGTGCCCGTTTATTTAAGAAACATAAAAAT
TACAATTAATTCCACACCTTAAAC
Found at i:82838650 original size:47 final size:46
Alignment explanation
Indices: 82838599--82838851 Score: 171
Period size: 47 Copynumber: 5.3 Consensus size: 46
82838589 TGCGTATCCT
* *
82838599 AGACACGTCTTACACTGGCTATCTCTGTCAAGGCCGATGCATGTCCC
1 AGACATGTCTTACACTGGCTATCTC-GTCATGGCCGATGCATGTCCC
* *
82838646 AGACATGTTTTACACTGGC-A-CTCGTCTCTGTGCCGATGCCATGTCCC
1 AGACATGTCTTACACTGGCTATCTCGTC-ATG-GCCGATG-CATGTCCC
* * * * *
82838693 AGACATTATGTTACACTGGATATCATAGT-ATGGCTGATGCATGTCCC
1 AGACA-TGTCTTACACTGGCTATC-TCGTCATGGCCGATGCATGTCCC
* * * *
82838740 GGACATGTCTTACACTAGC-CT-TCGTC-TGGATGTCGATGCCATGTCCC
1 AGACATGTCTTACACTGGCTATCTCGTCAT-G--GCCGATG-CATGTCCC
* * *
82838787 AGACATGGTCTTATACTGGCTCTCATATACG-CAT-GCTGATGCATGTCCC
1 AGACAT-GTCTTACACTGG--CT-ATCT-CGTCATGGCCGATGCATGTCCC
82838836 AGACATGTCTTACACT
1 AGACATGTCTTACACT
82838852 AGCACACAAA
Statistics
Matches: 160, Mismatches: 26, Indels: 39
0.71 0.12 0.17
Matches are distributed among these distances:
43 4 0.03
44 4 0.03
45 5 0.03
46 23 0.14
47 55 0.34
48 36 0.22
49 17 0.11
50 7 0.04
51 3 0.02
52 1 0.01
53 2 0.01
54 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (46 bp):
AGACATGTCTTACACTGGCTATCTCGTCATGGCCGATGCATGTCCC
Found at i:82838737 original size:94 final size:95
Alignment explanation
Indices: 82838494--82838856 Score: 298
Period size: 94 Copynumber: 3.9 Consensus size: 95
82838484 ATATATTGCT
* * * * *
82838494 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATACGCGTGCTGATG-ATGTCCCAGA
1 GATGCCATGTCCCAGACATGATCTTACACTGGATATCATATA--CGAGCTGATGCATGTCCCAGA
* ** * *
82838558 CATGTCTTGCACTAGCACAAC-TCT-TA-GCT
64 CATGTCTTACACTAGCACTTCGTCTGGATGCC
* * * * * * * * *
82838587 GATG-CGTATCCTAGACACG-TCTTACACTGGCTATC-TCTGTCAAGGCCGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGATCTTACACTGGATATCATAT-ACGA-GCTGATGCATGTCCCAGA
* * *
82838649 CATGTTTTACACTGGCAC-TCGTCTCTG-TGCC
64 CATGTCTTACACTAGCACTTCGTCT-GGATGCC
* * * *
82838680 GATGCCATGTCCCAGACATTATGTTACACTGGATATCATAGTATG-GCTGATGCATGTCCCGGAC
1 GATGCCATGTCCCAGACATGATCTTACACTGGATATCATA-TACGAGCTGATGCATGTCCCAGAC
*
82838744 ATGTCTTACACTAGC-CTTCGTCTGGATGTC
65 ATGTCTTACACTAGCACTTCGTCTGGATGCC
* * * *
82838774 GATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATATACGCATGCTGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGATCTTACACTGGATATCATATACG-A-GCTGATGCATGTCCCAGA
82838839 CATGTCTTACACTAGCAC
64 CATGTCTTACACTAGCAC
82838857 ACAAATCACC
Statistics
Matches: 211, Mismatches: 42, Indels: 30
0.75 0.15 0.11
Matches are distributed among these distances:
89 1 0.00
90 9 0.04
91 42 0.20
92 11 0.05
93 15 0.07
94 83 0.39
95 14 0.07
96 34 0.16
97 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGATCTTACACTGGATATCATATACGAGCTGATGCATGTCCCAGACA
TGTCTTACACTAGCACTTCGTCTGGATGCC
Found at i:82839234 original size:30 final size:30
Alignment explanation
Indices: 82839194--82839251 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
82839184 AAATTCACAT
* *
82839194 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGATAAAATAACCATTTTGCCCCTAGA
82839224 CTTTGATAAAATAACCATTTTGCCCCTA
1 CTTTGATAAAATAACCATTTTGCCCCTA
82839252 AGCTCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (30 bp):
CTTTGATAAAATAACCATTTTGCCCCTAGA
Found at i:82846250 original size:47 final size:46
Alignment explanation
Indices: 82846101--82846454 Score: 165
Period size: 47 Copynumber: 7.5 Consensus size: 46
82846091 TTGCTGATGC
* * *
82846101 CATGTCCCAGACATGGTCTTACACTGGC-TCTCATATACGCGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCATCTCAT-T-CGAG-GCCGATA
* * *
82846150 CATGTCCCAGACATGTCTTACACTAGCACAACTC-TT--A-GCCGATG
1 CATGTCCCAGACATGTCTTACACT-G-GCATCTCATTCGAGGCCGATA
* * *
82846194 CGTGCCCCAGACACGTCTTACACTGGCTATCTC-TGTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTGGC-ATCTCAT-TCGAGGCCGATA
* * * *
82846241 CATGTCCCAGACATGTTTTACACTAGCA-CTCGTCTCTG-TGCCGATA
1 CATGTCCCAGACATGTCTTACACTGGCATCTCAT-TC-GAGGCCGATA
* * * * *
82846287 CCATGTCCCAGACATTGTGTTACACTGGC-TATCA-TAGTATGGCTGATG
1 -CATGTCCCAGACA-TGTCTTACACTGGCATCTCATTCG-A-GGCCGATA
* * * * * * ** *
82846335 CATGTCCCGGACATGTCTTGCACTAGC-CCTCGTCTGGATACCGATGC
1 CATGTCCCAGACATGTCTTACACTGGCATCTCAT-TCGAGGCCGAT-A
* * * *
82846382 CATGTCCCAGACATGGTCTTATATTGGC-TCTCATATACGCGTGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCATCTCAT-T-CGAG-GCCGATA
82846431 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
82846455 AGCACACAAT
Statistics
Matches: 231, Mismatches: 52, Indels: 45
0.70 0.16 0.14
Matches are distributed among these distances:
42 1 0.00
43 6 0.03
44 28 0.12
45 4 0.02
46 30 0.13
47 68 0.29
48 53 0.23
49 31 0.13
50 7 0.03
51 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCATCTCATTCGAGGCCGATA
Found at i:82846476 original size:94 final size:93
Alignment explanation
Indices: 82846096--82846461 Score: 368
Period size: 94 Copynumber: 3.9 Consensus size: 93
82846086 ATATATTGCT
*
82846096 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCG-GCCGATGCATGTCCCAGA
*
82846161 CATGTCTTACACTAGCACAAC-TCTTAGCC
65 CATGTCTTACACTAGCAC-ACGTCTCAGCC
* * * * * *
82846190 GATG-CGTGCCCCAGACA-CGTCTTACACTGGCTATCTC-TGT-CGAGGCCGATACATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATATACGCGGCCGATGCATGTCCCAG
* * *
82846251 ACATGTTTTACACTAGCACTCGTCTCTGTGCC
64 ACATGTCTTACACTAGCACACGTCTC--AGCC
* * * * * * *
82846283 GATACCATGTCCCAGACATTGTGTTACACTGGCTATCATAGTA--TGGCTGATGCATGTCCCGGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGGCCGATGCATGTCCCAGA
* * * * *
82846346 CATGTCTTGCACTAGCCCTCGTCTGGATACC
65 CATGTCTTACACTAGCACACGTCT-CA-GCC
* *
82846377 GATGCCATGTCCCAGACATGGTCTTATATTGGCTCTCATATACGCGTGCCGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCG-GCCGATGCATGTCCCAGA
82846442 CATGTCTTACACTAGCACAC
65 CATGTCTTACACTAGCACAC
82846462 AATTCACCCA
Statistics
Matches: 217, Mismatches: 40, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
90 1 0.00
91 36 0.17
92 16 0.07
93 24 0.11
94 93 0.43
95 14 0.06
96 33 0.15
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACACGTCTCAGCC
Found at i:82848969 original size:10 final size:10
Alignment explanation
Indices: 82848953--82848991 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
82848943 AATTTTAGCT
82848953 TTTATCTTTA
1 TTTATCTTTA
*
82848963 GTTATCTTTA
1 TTTATCTTTA
82848973 TTTAT-TTGTA
1 TTTATCTT-TA
82848983 TTTATCTTT
1 TTTATCTTT
82848992 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.18, C:0.08, G:0.05, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:82855308 original size:12 final size:11
Alignment explanation
Indices: 82855285--82855323 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 11
82855275 TTTGTTTTTC
82855285 TTTATTTTTAT
1 TTTATTTTTAT
82855296 TTTATTATTTAT
1 TTTATT-TTTAT
82855308 TTTATTGTATTAT
1 TTTATT-T-TTAT
82855321 TTT
1 TTT
82855324 TTGGGTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 6 0.24
12 12 0.48
13 7 0.28
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:82855310 original size:17 final size:18
Alignment explanation
Indices: 82855285--82855322 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
82855275 TTTGTTTTTC
*
82855285 TTTATTTTTATTTTATTA
1 TTTATTTTTATTGTATTA
82855303 TTTA-TTTTATTGTATTA
1 TTTATTTTTATTGTATTA
82855320 TTT
1 TTT
82855323 TTTGGGTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTATTTTTATTGTATTA
Found at i:82855442 original size:38 final size:38
Alignment explanation
Indices: 82855399--82855473 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
82855389 GAAAAACTTA
82855399 AAAATTGGTATGGAATAGCCCTTATCCTATCCCTATTT
1 AAAATTGGTATGGAATAGCCCTTATCCTATCCCTATTT
*
82855437 AAAATTGGTATGGAATAGCCCTTATCCTATCCTTATT
1 AAAATTGGTATGGAATAGCCCTTATCCTATCCCTATT
82855474 CCAACCAGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.37
Consensus pattern (38 bp):
AAAATTGGTATGGAATAGCCCTTATCCTATCCCTATTT
Found at i:82865592 original size:2 final size:2
Alignment explanation
Indices: 82865585--82865617 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
82865575 AGTGTTTGTA
82865585 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82865618 ACAAATCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82873047 original size:25 final size:25
Alignment explanation
Indices: 82873019--82873067 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
82873009 TAGCATTTCG
*
82873019 TTAGTTAGATTGATACATTTGTTCA
1 TTAGCTAGATTGATACATTTGTTCA
82873044 TTAGCTAGATTGATACATTTGTTC
1 TTAGCTAGATTGATACATTTGTTC
82873068 TAATACCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.10, G:0.16, T:0.47
Consensus pattern (25 bp):
TTAGCTAGATTGATACATTTGTTCA
Found at i:82873188 original size:39 final size:38
Alignment explanation
Indices: 82873145--82873271 Score: 114
Period size: 39 Copynumber: 3.3 Consensus size: 38
82873135 ACGCTAACAC
82873145 GAGAGAATACAAAAAAATATGAGAGGTACAAAAAATTAT
1 GAGAGAATACAAAAAAATATGAG-GGTACAAAAAATTAT
** ** *
82873184 GAGAGAGA-ATTAAAAAATATGAGGAAACATCAAAATTAT
1 GAGAGA-ATACAAAAAAATATGAGGGTACA-AAAAATTAT
* ** *
82873223 GAGAGAATATAAAAAACCATGAGGGGATACCAAAAATTAT
1 GAGAGAATACAAAAAAATATGA-GGG-TACAAAAAATTAT
82873263 GAG-GAATAC
1 GAGAGAATAC
82873272 CAATTTTTTA
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
38 5 0.07
39 49 0.70
40 14 0.20
41 2 0.03
ACGTcount: A:0.55, C:0.07, G:0.20, T:0.18
Consensus pattern (38 bp):
GAGAGAATACAAAAAAATATGAGGGTACAAAAAATTAT
Found at i:82873198 original size:20 final size:20
Alignment explanation
Indices: 82873145--82873229 Score: 70
Period size: 19 Copynumber: 4.3 Consensus size: 20
82873135 ACGCTAACAC
*
82873145 GAGAGAATACA-AAAAAATAT
1 GAGAGAA-ACATAAAAATTAT
**
82873165 GAGAGGTACA-AAAAATTAT
1 GAGAGAAACATAAAAATTAT
* *
82873184 GAGAGAGAA-TTAAAAAATAT
1 GAGAGA-AACATAAAAATTAT
*
82873204 GAG-GAAACATCAAAATTAT
1 GAGAGAAACATAAAAATTAT
82873223 GAGAGAA
1 GAGAGAA
82873230 TATAAAAAAC
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
18 2 0.04
19 29 0.57
20 20 0.39
ACGTcount: A:0.58, C:0.05, G:0.20, T:0.18
Consensus pattern (20 bp):
GAGAGAAACATAAAAATTAT
Found at i:82873237 original size:19 final size:18
Alignment explanation
Indices: 82873175--82873237 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 18
82873165 GAGAGGTACA
82873175 AAAAATTATGAGAGAGAATT
1 AAAAATTATGAGAGA-AA-T
*
82873195 AAAAAATATGAG-GAAACAT
1 AAAAATTATGAGAG-AA-AT
*
82873214 CAAAATTATGAGAGAATAT
1 AAAAATTATGAGAGAA-AT
82873233 AAAAA
1 AAAAA
82873238 ACCATGAGGG
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
19 21 0.60
20 14 0.40
ACGTcount: A:0.60, C:0.03, G:0.16, T:0.21
Consensus pattern (18 bp):
AAAAATTATGAGAGAAAT
Found at i:82873271 original size:19 final size:19
Alignment explanation
Indices: 82873215--82873274 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 19
82873205 AGGAAACATC
**
82873215 AAAATTATGAGAGAATATAA
1 AAAATTATGAG-GAATACCA
** *
82873235 AAAACCATGAGGGGATACCA
1 AAAATTATGA-GGAATACCA
82873255 AAAATTATGAGGAATACCA
1 AAAATTATGAGGAATACCA
82873274 A
1 A
82873275 TTTTTTATTC
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
19 9 0.29
20 21 0.68
21 1 0.03
ACGTcount: A:0.53, C:0.10, G:0.18, T:0.18
Consensus pattern (19 bp):
AAAATTATGAGGAATACCA
Found at i:82873722 original size:5 final size:5
Alignment explanation
Indices: 82873712--82873746 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
82873702 TTGTGTGTTC
82873712 TTTAT TTTATTT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTA--T TTTAT TTTAT TTTAT TTTAT TTT
82873747 TCTCAAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 23 0.82
7 5 0.18
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTAT
Found at i:82883528 original size:49 final size:49
Alignment explanation
Indices: 82883455--82883641 Score: 329
Period size: 49 Copynumber: 3.8 Consensus size: 49
82883445 TATGATATAC
* * *
82883455 ATATATGTGTGATAAGGCCGAATGGCCGATGTGATGGATGTGAAAATGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
82883504 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
* *
82883553 ATATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
82883602 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
82883642 CGATATGTAT
Statistics
Matches: 132, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 132 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
Found at i:82887296 original size:30 final size:30
Alignment explanation
Indices: 82887260--82887359 Score: 116
Period size: 28 Copynumber: 3.4 Consensus size: 30
82887250 ACAAGATTGA
* * *
82887260 CACTAAGTGTGCGGGTTTAAAATTGTACAG
1 CACTAAGTGTGCGAGTTTAAAATTATATAG
* *
82887290 CACTAAGTGTGCGAGTTT--GATTCTATAG
1 CACTAAGTGTGCGAGTTTAAAATTATATAG
* *
82887318 CACTAAGTGTGCGAGCTGAAAA-TATATAG
1 CACTAAGTGTGCGAGTTTAAAATTATATAG
82887347 CACTAAGTGTGCG
1 CACTAAGTGTGCG
82887360 GATTCACTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.32
30 18 0.30
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (30 bp):
CACTAAGTGTGCGAGTTTAAAATTATATAG
Found at i:82887371 original size:29 final size:28
Alignment explanation
Indices: 82887288--82887363 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
82887278 AAAATTGTAC
* *
82887288 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
82887316 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
82887345 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
82887364 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:82889746 original size:5 final size:5
Alignment explanation
Indices: 82889736--82889768 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
82889726 TTGTGTGTTC
82889736 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
82889769 TCTCAGTTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:82889931 original size:2 final size:2
Alignment explanation
Indices: 82889924--82889953 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
82889914 ATTCTAAGTA
82889924 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82889954 GAAGACTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82890461 original size:25 final size:25
Alignment explanation
Indices: 82890433--82890488 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
82890423 TAAACACATT
*
82890433 AATTTATTTTTATAT-TAGATAAATA
1 AATTTATTTTTATATGCA-ATAAATA
*
82890458 AATTTATTTTTGTATGCAATAAATA
1 AATTTATTTTTATATGCAATAAATA
82890483 AATTTA
1 AATTTA
82890489 AATGAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 27 0.96
26 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (25 bp):
AATTTATTTTTATATGCAATAAATA
Found at i:82895323 original size:39 final size:37
Alignment explanation
Indices: 82895188--82895325 Score: 129
Period size: 37 Copynumber: 3.7 Consensus size: 37
82895178 TAGATATGTA
** * * * *
82895188 TATATATAATATAAATATGCATACAT-GGTCTTGTTA
1 TATATATAATATAAATATGTGTATATGGGTCCTATTT
*
82895224 TATATATAATATAAATACTCGT-T-TATGGGTCCTGTTT
1 TATATATAATATAAATA-T-GTGTATATGGGTCCTATTT
*
82895261 TATATATAATATAAATATGTGTATATGGGTCTTATTT
1 TATATATAATATAAATATGTGTATATGGGTCCTATTT
* *
82895298 TATATAATTTATATATATATGTGTATAT
1 TATAT-A-TAATATAAATATGTGTATAT
82895326 AGTTTTAGTA
Statistics
Matches: 87, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
35 2 0.02
36 21 0.24
37 44 0.51
38 2 0.02
39 18 0.21
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.47
Consensus pattern (37 bp):
TATATATAATATAAATATGTGTATATGGGTCCTATTT
Found at i:82901578 original size:7 final size:7
Alignment explanation
Indices: 82901566--82901590 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
82901556 TTGGAAAGAA
82901566 GTTTAAT
1 GTTTAAT
82901573 GTTTAAT
1 GTTTAAT
82901580 GTTTAAT
1 GTTTAAT
82901587 GTTT
1 GTTT
82901591 CTAGCATTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (7 bp):
GTTTAAT
Found at i:82904809 original size:27 final size:27
Alignment explanation
Indices: 82904779--82904861 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
82904769 GATGCAAAAG
* *
82904779 TATATAGTGAGTCCGCACACTTAGTGC
1 TATATAATAAGTCCGCACACTTAGTGC
*
82904806 TATATAATCAG-CTCGCACACTTAGTGC
1 TATATAATAAGTC-CGCACACTTAGTGC
* *
82904833 TATATAATCAAATTCGCACACTTAGTGC
1 TATATAAT-AAGTCCGCACACTTAGTGC
82904861 T
1 T
82904862 GTACAAATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 31 0.65
28 16 0.33
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (27 bp):
TATATAATAAGTCCGCACACTTAGTGC
Found at i:82904858 original size:28 final size:27
Alignment explanation
Indices: 82904792--82904861 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
82904782 ATAGTGAGTC
*
82904792 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
82904819 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
82904847 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82904862 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:82907607 original size:43 final size:41
Alignment explanation
Indices: 82907560--82907705 Score: 154
Period size: 43 Copynumber: 3.5 Consensus size: 41
82907550 TGCCAACGTT
*
82907560 CCAGACATGGTCTTACATGTAATCATATCTTGATGCCACTGTC
1 CCAGACATGGTCTTACATGTAATCAAATC-TGATGCCA-TGTC
* *
82907603 CCAGACAGGGTCTTACACG-AATCAAATAC-GATGCCGATGTC
1 CCAGACATGGTCTTACATGTAATCAAAT-CTGATGCC-ATGTC
*
82907644 CCAGACATGGTCTTACATGTAATCACATATC-AATGCCAATGTC
1 CCAGACATGGTCTTACATGTAATCA-A-ATCTGATGCC-ATGTC
**
82907687 CCAGATGTGGTCTTACATG
1 CCAGACATGGTCTTACATG
82907706 AATACACTTA
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
41 27 0.30
42 13 0.15
43 47 0.53
44 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (41 bp):
CCAGACATGGTCTTACATGTAATCAAATCTGATGCCATGTC
Found at i:82911496 original size:29 final size:27
Alignment explanation
Indices: 82911443--82911507 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 27
82911433 ACTCCATTAA
* * *
82911443 AAAATCAATAAAAATAATATCACAAAC
1 AAAATCCATAAAAATAACATAACAAAC
82911470 AAAATCCATAAAAAATTAACATAACAAAC
1 AAAATCCAT-AAAAA-TAACATAACAAAC
82911499 AAAATCCAT
1 AAAATCCAT
82911508 CAATCCATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 8 0.24
28 5 0.15
29 20 0.61
ACGTcount: A:0.65, C:0.17, G:0.00, T:0.18
Consensus pattern (27 bp):
AAAATCCATAAAAATAACATAACAAAC
Found at i:82923166 original size:12 final size:12
Alignment explanation
Indices: 82923149--82923175 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
82923139 GCCTGAAGTA
82923149 ATGCACACGGGC
1 ATGCACACGGGC
82923161 ATGCACACGGGC
1 ATGCACACGGGC
82923173 ATG
1 ATG
82923176 ATTGGCTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.30, G:0.33, T:0.11
Consensus pattern (12 bp):
ATGCACACGGGC
Found at i:82928384 original size:40 final size:40
Alignment explanation
Indices: 82928325--82928493 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
82928315 CGGGACTTTA
* * *
82928325 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
82928365 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
82928405 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
82928445 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
82928485 CCCGGATAT
1 CCCGGATAT
82928494 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:82936489 original size:40 final size:40
Alignment explanation
Indices: 82936430--82936598 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
82936420 CGGGACTTTA
* * *
82936430 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
82936470 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
82936510 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
82936550 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
82936590 CCCGGATAT
1 CCCGGATAT
82936599 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:82941321 original size:17 final size:18
Alignment explanation
Indices: 82941289--82941327 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
82941279 TGAATGGCGG
82941289 ACACATAAACCGAAAAC-
1 ACACATAAACCGAAAACT
82941306 ACACGATAAACC-AAAACT
1 ACAC-ATAAACCGAAAACT
82941324 ACAC
1 ACAC
82941328 CAGGATGAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.56, C:0.31, G:0.05, T:0.08
Consensus pattern (18 bp):
ACACATAAACCGAAAACT
Found at i:82952615 original size:48 final size:47
Alignment explanation
Indices: 82952531--82952653 Score: 124
Period size: 48 Copynumber: 2.6 Consensus size: 47
82952521 TGAGAGCCAG
* * *
82952531 TGTAAGACCATGTCTAGGACATGGAATCAGCATTGATATGTGATCCAAC
1 TGTAAGACCATGTCTGGGACATGGCATCAG-ATTGATATAT-ATCCAAC
* * * * *
82952580 T-TAAGACCATGTTTGGGACATGGCATC-GATGTTGATATATTTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGA--TTGATATATATCCAAC
82952627 TGTAAGACCATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
82952654 GGGCACTGAC
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
46 1 0.02
47 5 0.08
48 55 0.89
49 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGATTGATATATATCCAAC
Found at i:82954768 original size:16 final size:17
Alignment explanation
Indices: 82954747--82954779 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
82954737 TAAATGAGTT
82954747 AATTAGGAT-TAAATTG
1 AATTAGGATATAAATTG
*
82954763 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
82954780 GATAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (17 bp):
AATTAGGATATAAATTG
Found at i:82957984 original size:29 final size:29
Alignment explanation
Indices: 82957951--82958111 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
82957941 CCTCCGAACT
** * * *
82957951 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
82957980 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82958009 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82958038 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82958067 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82958096 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
82958112 ATCTCGTCAC
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:82958013 original size:87 final size:87
Alignment explanation
Indices: 82957893--82958111 Score: 244
Period size: 87 Copynumber: 2.5 Consensus size: 87
82957883 TACTCGATTT
** * * ** * *
82957893 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAACTCGCAC
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACTTAGTGCCATATACCTCC-AACACGCAC
* * *
82957956 ACCCAGTGCCGTATTTTTCCAGCT
64 ACCCAGTGCCATATATTTCCAGCA
* ** *
82957980 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
**
82958045 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
*
82958067 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCA
82958112 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
86 4 0.04
87 104 0.94
88 3 0.03
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:82959965 original size:40 final size:39
Alignment explanation
Indices: 82959838--82959967 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
82959828 ATGCTGGAAA
* *
82959838 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
82959878 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
82959918 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
82959958 TTATATCCGG
1 TTATATCCGG
82959968 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:82968024 original size:40 final size:39
Alignment explanation
Indices: 82967897--82968026 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
82967887 ATGCTGGAAA
* *
82967897 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
82967937 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
82967977 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
82968017 TTATATCCGG
1 TTATATCCGG
82968027 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:82970218 original size:44 final size:44
Alignment explanation
Indices: 82970169--82970260 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
82970159 TGTTCAGGTA
* *
82970169 TACTTCAACCTT-GAGTCGATGAGGCACTATAAGTGTCGTACTGT
1 TACTTCAA-CTTCGAGTCGATGAGGCACCATAAGTGTCGTACTGC
* **
82970213 TACTTCGACTTCGAGTCGATGAGGCACCATGTGTGTCGTACTGC
1 TACTTCAACTTCGAGTCGATGAGGCACCATAAGTGTCGTACTGC
82970257 TACT
1 TACT
82970261 GTTACATTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 3 0.07
44 39 0.93
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.32
Consensus pattern (44 bp):
TACTTCAACTTCGAGTCGATGAGGCACCATAAGTGTCGTACTGC
Found at i:82977072 original size:48 final size:48
Alignment explanation
Indices: 82976945--82977074 Score: 161
Period size: 48 Copynumber: 2.7 Consensus size: 48
82976935 TGGTTAATGA
* * *
82976945 GAGCCAGTGTAAGACCATGTCTAGGACATGGAATCAACATTGATATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATATAT
** ** *
82976993 GAGCCAACGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATATAT
* * *
82977041 GTGCTAGTGTAAGGCCATGTCTGGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
82977075 AGGCACTGAC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGATATAT
Found at i:82978997 original size:20 final size:20
Alignment explanation
Indices: 82978968--82979020 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
82978958 AGGGGCACAC
*
82978968 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGAACAT
*
82978988 GCCTGTGTGGCCTGGAACAT
1 GCCCGTGTGGCCTGGAACAT
82979008 GCCCGTGTGGCCT
1 GCCCGTGTGGCCT
82979021 ACCCATGGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.09, C:0.30, G:0.38, T:0.23
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAT
Found at i:82981003 original size:16 final size:16
Alignment explanation
Indices: 82980982--82981012 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82980972 CTTCTTTTGT
*
82980982 TTCTTTATTTTATTTA
1 TTCTTTATTTCATTTA
82980998 TTCTTTATTTCATTT
1 TTCTTTATTTCATTT
82981013 TATTTACTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCTTTATTTCATTTA
Found at i:82981163 original size:22 final size:22
Alignment explanation
Indices: 82981137--82981184 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
82981127 CTATCTCAAT
82981137 TAATAGATAAAATATAA-AATAA-
1 TAATA-ATAAAA-ATAATAATAAG
82981159 TAATAATAAAAATAATAATAAG
1 TAATAATAAAAATAATAATAAG
82981181 TAAT
1 TAAT
82981185 TATCTTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.17
21 11 0.46
22 9 0.38
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (22 bp):
TAATAATAAAAATAATAATAAG
Found at i:82981170 original size:15 final size:16
Alignment explanation
Indices: 82981138--82981179 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
82981128 TATCTCAATT
82981138 AATAGATAA-AATATAA
1 AATA-ATAATAATATAA
82981154 AATAATAATAATA-AA
1 AATAATAATAATATAA
82981169 AATAATAATAA
1 AATAATAATAA
82981180 GTAATTATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 17 0.68
16 8 0.32
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (16 bp):
AATAATAATAATATAA
Found at i:82983005 original size:87 final size:87
Alignment explanation
Indices: 82982859--82983032 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
82982849 ATTGTTAGAG
82982859 TTGAGTGACTTGAATCCTTGTTGAAATAAAATATAGTGTAACACCCCAAACCTGGCATAGAAGTT
1 TTGAGTGACTTGAATCCTTGTTGAAATAAAATATAGTGTAACACCCCAAACCTGGCATAGAAGTT
82982924 TAAGCCGAACTTGGATGAGTTA
66 TAAGCCGAACTTGGATGAGTTA
82982946 TTGAGTGACTTGAATCCTTGTTGAAATAAAATATAGTGTAACACCCCAAACCTGGCATAGAAGTT
1 TTGAGTGACTTGAATCCTTGTTGAAATAAAATATAGTGTAACACCCCAAACCTGGCATAGAAGTT
82983011 TAAGCCGAACTTGGATGAGTTA
66 TAAGCCGAACTTGGATGAGTTA
82983033 CACCAACACA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (87 bp):
TTGAGTGACTTGAATCCTTGTTGAAATAAAATATAGTGTAACACCCCAAACCTGGCATAGAAGTT
TAAGCCGAACTTGGATGAGTTA
Found at i:82983487 original size:25 final size:25
Alignment explanation
Indices: 82983421--82983489 Score: 66
Period size: 30 Copynumber: 2.6 Consensus size: 25
82983411 AACAAAGAAA
*
82983421 AATAAAATAGAGCAGAACTAAACTG
1 AATAGAATAGAGCAGAACTAAACTG
**
82983446 AATGGTACAGAGCAGAGCAGAACTAAACTG
1 AA---T--AGAATAGAGCAGAACTAAACTG
82983476 AATAGAATAGAGCA
1 AATAGAATAGAGCA
82983490 TATATGTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
25 11 0.32
27 1 0.03
28 1 0.03
30 21 0.62
ACGTcount: A:0.51, C:0.13, G:0.22, T:0.14
Consensus pattern (25 bp):
AATAGAATAGAGCAGAACTAAACTG
Found at i:82983488 original size:30 final size:30
Alignment explanation
Indices: 82983429--82983489 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
82983419 AAAATAAAAT
* *
82983429 AGAGCAGAACTAAACTGAATGGTACAGAGC
1 AGAGCAGAACTAAACTGAATAGAACAGAGC
*
82983459 AGAGCAGAACTAAACTGAATAGAATAGAGC
1 AGAGCAGAACTAAACTGAATAGAACAGAGC
82983489 A
1 A
82983490 TATATGTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.48, C:0.15, G:0.25, T:0.13
Consensus pattern (30 bp):
AGAGCAGAACTAAACTGAATAGAACAGAGC
Found at i:82991469 original size:29 final size:28
Alignment explanation
Indices: 82991437--82991539 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
82991427 GGGACGAGAT
* *
82991437 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
82991466 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
82991495 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
82991524 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82991540 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:82996876 original size:28 final size:28
Alignment explanation
Indices: 82996839--82996945 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
82996829 GCAATCAAAT
*
82996839 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
82996867 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
82996895 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
82996923 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
82996946 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:83002314 original size:21 final size:20
Alignment explanation
Indices: 83002274--83002318 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
83002264 CCCTTTAATG
*
83002274 TTTTCTCTCTTTTTTTTTCT
1 TTTTCTCTCTTTTGTTTTCT
*
83002294 TTTTCTCTGTTATTGTTTTCT
1 TTTTCTCTCTT-TTGTTTTCT
83002315 TTTT
1 TTTT
83002319 GGCCCATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.78
Consensus pattern (20 bp):
TTTTCTCTCTTTTGTTTTCT
Found at i:83003576 original size:23 final size:23
Alignment explanation
Indices: 83003494--83003590 Score: 90
Period size: 23 Copynumber: 4.3 Consensus size: 23
83003484 ATGGGGGTAG
*
83003494 GATAT-GCTCTGATATGTTATAA
1 GATATGGCTCTGATATGTTATAT
* *
83003516 GATAT-GCTCTAATATGCTATAT
1 GATATGGCTCTGATATGTTATAT
* * * *
83003538 GACATGGTTCTTATATGATATAT
1 GATATGGCTCTGATATGTTATAT
* * *
83003561 GATATGGCTTTGATATTTTAAAT
1 GATATGGCTCTGATATGTTATAT
83003584 GATATGG
1 GATATGG
83003591 AAAATTTCAG
Statistics
Matches: 60, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
22 23 0.38
23 37 0.62
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (23 bp):
GATATGGCTCTGATATGTTATAT
Found at i:83008014 original size:13 final size:13
Alignment explanation
Indices: 83007996--83008021 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83007986 CCAATACCTT
83007996 ATTTTCTAAAACC
1 ATTTTCTAAAACC
83008009 ATTTTCTAAAACC
1 ATTTTCTAAAACC
83008022 CTTTGTCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
ATTTTCTAAAACC
Found at i:83009646 original size:14 final size:14
Alignment explanation
Indices: 83009620--83009661 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
83009610 TTTTTGCAAC
83009620 GTTTTCTATCATTTT
1 GTTTTC-ATCATTTT
**
83009635 GTTTTCATCATTCA
1 GTTTTCATCATTTT
83009649 G-TTTCATCATTTT
1 GTTTTCATCATTTT
83009662 CATTTCTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 10 0.43
14 7 0.30
15 6 0.26
ACGTcount: A:0.17, C:0.17, G:0.07, T:0.60
Consensus pattern (14 bp):
GTTTTCATCATTTT
Found at i:83011183 original size:26 final size:25
Alignment explanation
Indices: 83011143--83011192 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
83011133 CCACCCAGCC
*
83011143 AATACGCAACAAAGCTGCCAGTAAT
1 AATACGCAACAAAGCTACCAGTAAT
*
83011168 AATATCGCAGCAAAGCTACCAGTAA
1 AATA-CGCAACAAAGCTACCAGTAA
83011193 CAGTAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (25 bp):
AATACGCAACAAAGCTACCAGTAAT
Found at i:83018623 original size:29 final size:29
Alignment explanation
Indices: 83018590--83018663 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
83018580 GTGACGAGAT
83018590 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83018619 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
83018648 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83018664 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83018679 original size:29 final size:29
Alignment explanation
Indices: 83018647--83018722 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
83018637 CTGGAAATAT
* *
83018647 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
83018676 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
83018705 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
83018723 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:83019561 original size:17 final size:16
Alignment explanation
Indices: 83019539--83019572 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
83019529 AAATCACTAA
83019539 AAATAGTAAGTAGAATT
1 AAATAGTAAGTA-AATT
*
83019556 AAATAGTGAGTAAATT
1 AAATAGTAAGTAAATT
83019572 A
1 A
83019573 TGGAACTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.53, C:0.00, G:0.18, T:0.29
Consensus pattern (16 bp):
AAATAGTAAGTAAATT
Found at i:83026457 original size:29 final size:29
Alignment explanation
Indices: 83026424--83026497 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
83026414 GTGACGAGAT
83026424 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83026453 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
83026482 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83026498 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83026513 original size:29 final size:29
Alignment explanation
Indices: 83026481--83026556 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
83026471 CTGGAAATAT
* *
83026481 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
83026510 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
83026539 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
83026557 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:83029734 original size:26 final size:26
Alignment explanation
Indices: 83029704--83029777 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
83029694 GCCAACACAC
83029704 TAATATCGCAGCAAAGCTGCCAGTAA
1 TAATATCGCAGCAAAGCTGCCAGTAA
*
83029730 TAATATCACAGCAAAGCTGCCAGTAA
1 TAATATCGCAGCAAAGCTGCCAGTAA
* * * *
83029756 CAGTAACGCAGCAGAGCTGCCA
1 TAATATCGCAGCAAAGCTGCCA
83029778 ATATCAGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.38, C:0.26, G:0.20, T:0.16
Consensus pattern (26 bp):
TAATATCGCAGCAAAGCTGCCAGTAA
Found at i:83031845 original size:15 final size:15
Alignment explanation
Indices: 83031827--83031861 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
83031817 TATTCTACTC
*
83031827 TGTTTTGTTCTGTTT
1 TGTTCTGTTCTGTTT
83031842 TGTTCTGTTCTGTTT
1 TGTTCTGTTCTGTTT
83031857 TGTTC
1 TGTTC
83031862 AATTTTGCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.20, T:0.69
Consensus pattern (15 bp):
TGTTCTGTTCTGTTT
Found at i:83031861 original size:10 final size:10
Alignment explanation
Indices: 83031825--83031860 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
83031815 TCTATTCTAC
83031825 TCTGTTTTGT
1 TCTGTTTTGT
83031835 TCTGTTTTGT
1 TCTGTTTTGT
*
83031845 TCTGTTCTGT
1 TCTGTTTTGT
*
83031855 TTTGTT
1 TCTGTT
83031861 CAATTTTGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.00, C:0.11, G:0.19, T:0.69
Consensus pattern (10 bp):
TCTGTTTTGT
Found at i:83033623 original size:19 final size:19
Alignment explanation
Indices: 83033601--83033640 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
83033591 TTAAACTTTT
* *
83033601 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
83033620 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
83033639 AT
1 AT
83033641 AAAAAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:83040232 original size:27 final size:27
Alignment explanation
Indices: 83040197--83040275 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
83040187 CAAGGTCACG
83040197 ATCAATAGCGTCACTATCATCAATAGC
1 ATCAATAGCGTCACTATCATCAATAGC
* * * * *
83040224 GTCACTAGCATCAATATCATCACTAGC
1 ATCAATAGCGTCACTATCATCAATAGC
*
83040251 ATCAATATCGTCACTATCATCAATA
1 ATCAATAGCGTCACTATCATCAATA
83040276 TCGATATCAT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.28
Consensus pattern (27 bp):
ATCAATAGCGTCACTATCATCAATAGC
Found at i:83040244 original size:9 final size:9
Alignment explanation
Indices: 83040197--83040277 Score: 63
Period size: 9 Copynumber: 9.0 Consensus size: 9
83040187 CAAGGTCACG
*
83040197 ATCAATAGC
1 ATCAATATC
* *
83040206 GTCACTATC
1 ATCAATATC
*
83040215 ATCAATAGC
1 ATCAATATC
* * *
83040224 GTCACTAGC
1 ATCAATATC
83040233 ATCAATATC
1 ATCAATATC
* *
83040242 ATCACTAGC
1 ATCAATATC
83040251 ATCAATATC
1 ATCAATATC
* *
83040260 GTCACTATC
1 ATCAATATC
83040269 ATCAATATC
1 ATCAATATC
83040278 GATATCATCA
Statistics
Matches: 53, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.36, C:0.27, G:0.09, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:83040276 original size:18 final size:18
Alignment explanation
Indices: 83040197--83040290 Score: 122
Period size: 18 Copynumber: 5.4 Consensus size: 18
83040187 CAAGGTCACG
*
83040197 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
83040215 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
* *
83040233 ATCAATATCATCACTAGC
1 ATCAATATCGTCACTATC
83040251 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
83040269 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
83040284 ATCAATA
1 ATCAATA
83040291 AGAAAACCTT
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 59 0.83
ACGTcount: A:0.37, C:0.26, G:0.09, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:83045624 original size:20 final size:21
Alignment explanation
Indices: 83045558--83045626 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
83045548 TCACTTCGTT
83045558 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
83045579 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
83045600 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
83045621 -CTTTTT
1 TCTTTTT
83045627 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:83056462 original size:39 final size:40
Alignment explanation
Indices: 83056418--83056514 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
83056408 AAATACTAAT
83056418 ATGAGGGAATACCAAAAAA-TAT-AAGAAATACCAAAAATG
1 ATGAGGGAATACCAAAAAATTATGAAGAAATA-CAAAAATG
** * *
83056457 ATGA-GGAATATTAAAAAATTATGAAGAAATACTAAAATT
1 ATGAGGGAATACCAAAAAATTATGAAGAAATACAAAAATG
* *
83056496 ACGAGGAAATACCAAAAAA
1 ATGAGGGAATACCAAAAAA
83056515 AAATGTGGGG
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
38 12 0.26
39 16 0.34
40 19 0.40
ACGTcount: A:0.59, C:0.08, G:0.14, T:0.19
Consensus pattern (40 bp):
ATGAGGGAATACCAAAAAATTATGAAGAAATACAAAAATG
Found at i:83056466 original size:19 final size:19
Alignment explanation
Indices: 83056415--83056514 Score: 69
Period size: 20 Copynumber: 5.1 Consensus size: 19
83056405 TCAAAATACT
83056415 AATATGAGGGAATACCAAAA
1 AATATGA-GGAATACCAAAA
* *
83056435 AATATAAGAAATACC-AAA
1 AATATGAGGAATACCAAAA
**
83056453 AATGATGAGGAATATTAAAA
1 AAT-ATGAGGAATACCAAAA
* *
83056473 AATTATGAAGAAATA-CTAAA
1 AA-TATG-AGGAATACCAAAA
* *
83056493 ATTACGAGGAAATACCAAAA
1 AATATGAGG-AATACCAAAA
83056513 AA
1 AA
83056515 AAATGTGGGG
Statistics
Matches: 60, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
18 8 0.13
19 22 0.37
20 23 0.38
21 7 0.12
ACGTcount: A:0.59, C:0.08, G:0.14, T:0.19
Consensus pattern (19 bp):
AATATGAGGAATACCAAAA
Found at i:83056487 original size:21 final size:20
Alignment explanation
Indices: 83056425--83056493 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 20
83056415 AATATGAGGG
* *
83056425 AATACCAAAAAAT-ATAAGA
1 AATACTAAAAAATGATGAGA
* *
83056444 AATAC-CAAAAATGATGAGG
1 AATACTAAAAAATGATGAGA
* *
83056463 AATATTAAAAAATTATGAAGA
1 AATACTAAAAAATGATG-AGA
83056484 AATACTAAAA
1 AATACTAAAA
83056494 TTACGAGGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
18 6 0.15
19 13 0.33
20 9 0.23
21 11 0.28
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.20
Consensus pattern (20 bp):
AATACTAAAAAATGATGAGA
Found at i:83058397 original size:1 final size:1
Alignment explanation
Indices: 83058360--83058384 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
83058350 GCAGTAAGGC
83058360 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
83058385 GAACCCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:83059779 original size:15 final size:15
Alignment explanation
Indices: 83059759--83059788 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
83059749 AACACTTGAC
83059759 TTTGGAATAAGTATT
1 TTTGGAATAAGTATT
83059774 TTTGGAATAAGTATT
1 TTTGGAATAAGTATT
83059789 GATAATGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (15 bp):
TTTGGAATAAGTATT
Found at i:83068091 original size:19 final size:19
Alignment explanation
Indices: 83068067--83068106 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
83068057 ATGCTATCTA
* *
83068067 TAATAGTCTTAGTGTTTAC
1 TAATAGTCTCAGTATTTAC
83068086 TAATAGTCTCAGTATTTAC
1 TAATAGTCTCAGTATTTAC
83068105 TA
1 TA
83068107 TCTATAGCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (19 bp):
TAATAGTCTCAGTATTTAC
Found at i:83069522 original size:17 final size:18
Alignment explanation
Indices: 83069490--83069523 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
83069480 GTGGTTCACC
*
83069490 CGTGTGGGCTCACACGAT
1 CGTGTGGGCCCACACGAT
83069508 CGTGT-GGCCCACACGA
1 CGTGTGGGCCCACACGA
83069524 CCCAAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (18 bp):
CGTGTGGGCCCACACGAT
Found at i:83092787 original size:41 final size:41
Alignment explanation
Indices: 83092742--83092831 Score: 128
Period size: 41 Copynumber: 2.2 Consensus size: 41
83092732 TACAACATCC
* * *
83092742 TTTTCATTTGT-TATCCTTTTTGGATAGCATCCTTTTCAATA
1 TTTTCATTT-TATATCATTTTTGGATAACATCCTTTTCAACA
*
83092783 TTTTCATTTTATATCATTTTTGGATAACATCCTTTTCAACC
1 TTTTCATTTTATATCATTTTTGGATAACATCCTTTTCAACA
83092824 TTTTCATT
1 TTTTCATT
83092832 GATTCGGTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 1 0.02
41 43 0.98
ACGTcount: A:0.21, C:0.18, G:0.07, T:0.54
Consensus pattern (41 bp):
TTTTCATTTTATATCATTTTTGGATAACATCCTTTTCAACA
Found at i:83092906 original size:46 final size:45
Alignment explanation
Indices: 83092842--83092933 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 45
83092832 GATTCGGTAA
* * * *
83092842 TATCGAATGTAATGCCATGGTATCTTTCAACCATGGTCTTTTTCCT
1 TATCGAATATAATACCATGATATATTTCAACCATGGTC-TTTTCCT
* * *
83092888 TATCGAGTATAATACCATGATGTATTTCAATCATGGTCTTTTCCT
1 TATCGAATATAATACCATGATATATTTCAACCATGGTCTTTTCCT
83092933 T
1 T
83092934 TTCTCAGTCA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
45 8 0.21
46 31 0.79
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.42
Consensus pattern (45 bp):
TATCGAATATAATACCATGATATATTTCAACCATGGTCTTTTCCT
Found at i:83093811 original size:22 final size:20
Alignment explanation
Indices: 83093764--83093812 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
83093754 ATTATCCCAA
*
83093764 TCATTTTTAACTAATTCATC
1 TCATTTGTAACTAATTCATC
*
83093784 TACATTTGTAACTGAATTCTTTC
1 T-CATTTGTAACT-AATTC-ATC
83093807 TCATTT
1 TCATTT
83093813 TCATGTTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 1 0.04
21 10 0.42
22 10 0.42
23 3 0.12
ACGTcount: A:0.27, C:0.18, G:0.04, T:0.51
Consensus pattern (20 bp):
TCATTTGTAACTAATTCATC
Found at i:83093835 original size:12 final size:12
Alignment explanation
Indices: 83093803--83093849 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
83093793 AACTGAATTC
83093803 TTTCTCATTTTCA
1 TTTC-CATTTTCA
83093816 TGTT-CATTTTCA
1 T-TTCCATTTTCA
*
83093828 TTTCCATTTCCA
1 TTTCCATTTTCA
*
83093840 TTCCCATTTT
1 TTTCCATTTT
83093850 GAGAAAACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 2 0.07
12 24 0.83
13 1 0.03
14 2 0.07
ACGTcount: A:0.15, C:0.26, G:0.02, T:0.57
Consensus pattern (12 bp):
TTTCCATTTTCA
Found at i:83094956 original size:68 final size:68
Alignment explanation
Indices: 83094877--83095015 Score: 269
Period size: 68 Copynumber: 2.0 Consensus size: 68
83094867 ATATAATTCA
83094877 TGAATAATTATATTAACCAATATGTTCGAAAAAATTACAAGTGTACTTAGACGAAAATAATTAGA
1 TGAATAATTATATTAACCAATATGTTCGAAAAAATTACAAGTGTACTTAGACGAAAATAATTAGA
83094942 ATG
66 ATG
*
83094945 TGAATAATTATATTAACCAATATGTTTGAAAAAATTACAAGTGTACTTAGACGAAAATAATTAGA
1 TGAATAATTATATTAACCAATATGTTCGAAAAAATTACAAGTGTACTTAGACGAAAATAATTAGA
83095010 ATG
66 ATG
83095013 TGA
1 TGA
83095016 CATTTGATTG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.32
Consensus pattern (68 bp):
TGAATAATTATATTAACCAATATGTTCGAAAAAATTACAAGTGTACTTAGACGAAAATAATTAGA
ATG
Found at i:83097975 original size:39 final size:39
Alignment explanation
Indices: 83097932--83098107 Score: 174
Period size: 39 Copynumber: 4.5 Consensus size: 39
83097922 AGAGTCCTCT
* *
83097932 GATTTTCTCTTTGGCCCTGATAAATTACAGGAATCTTCA
1 GATTTTCTCTTTGGCCCTGAGAAATCACAGGAATCTTCA
* * * * *
83097971 GATTTTCTCTTTGGTCCTGAGGAATTAGAGGAATCTCCA
1 GATTTTCTCTTTGGCCCTGAGAAATCACAGGAATCTTCA
* * * * *
83098010 TATTTTCTCTTTGCCCCTGAGACATCACAAGAATCTTCT
1 GATTTTCTCTTTGGCCCTGAGAAATCACAGGAATCTTCA
* * * * *
83098049 GGTTTTCGCTTTGCCCCTGAAAAATCATAGGAATCTTC-
1 GATTTTCTCTTTGGCCCTGAGAAATCACAGGAATCTTCA
*
83098087 TATTTTCCTCTTTGGCCCTGA
1 GATTTT-CTCTTTGGCCCTGA
83098108 AATAGCAAAA
Statistics
Matches: 110, Mismatches: 26, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
38 4 0.04
39 106 0.96
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.38
Consensus pattern (39 bp):
GATTTTCTCTTTGGCCCTGAGAAATCACAGGAATCTTCA
Found at i:83098029 original size:78 final size:77
Alignment explanation
Indices: 83097933--83098107 Score: 197
Period size: 78 Copynumber: 2.2 Consensus size: 77
83097923 GAGTCCTCTG
* * * * ** ** *
83097933 ATTTTCTCTTTGGCCCTGATAAATTACAGGAATCTTCAGATTTTCTCTTTGGTCCTGAGGAATTA
1 ATTTTCTCTTTGGCCCTGAGAAATCACAAGAATCTTCAGATTTTCGCTTTGCCCCTGAAAAATCA
83097998 GAGGAATCTCCAT
66 GAGGAATCTCC-T
* * * *
83098011 ATTTTCTCTTTGCCCCTGAGACATCACAAGAATCTTCTGGTTTTCGCTTTGCCCCTGAAAAATCA
1 ATTTTCTCTTTGGCCCTGAGAAATCACAAGAATCTTCAGATTTTCGCTTTGCCCCTGAAAAATCA
* *
83098076 TAGGAATCTTCT
66 GAGGAATCTCCT
83098088 ATTTTCCTCTTTGGCCCTGA
1 ATTTT-CTCTTTGGCCCTGA
83098108 AATAGCAAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
77 6 0.08
78 74 0.93
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.38
Consensus pattern (77 bp):
ATTTTCTCTTTGGCCCTGAGAAATCACAAGAATCTTCAGATTTTCGCTTTGCCCCTGAAAAATCA
GAGGAATCTCCT
Found at i:83100158 original size:6 final size:6
Alignment explanation
Indices: 83100148--83100184 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
83100138 GTCCGGTGTG
*
83100148 AGGAAG AGGAAC AGGAAC AGGAAC AGGAAC AGGAAC A
1 AGGAAC AGGAAC AGGAAC AGGAAC AGGAAC AGGAAC A
83100185 CAAATCGTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.51, C:0.14, G:0.35, T:0.00
Consensus pattern (6 bp):
AGGAAC
Found at i:83105425 original size:19 final size:20
Alignment explanation
Indices: 83105388--83105426 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
83105378 TTATTACTAA
*
83105388 ATATTTATAAATTGTAATAT
1 ATATTTATAAATTGAAATAT
*
83105408 ATATTTAT-TATTGAAATAT
1 ATATTTATAAATTGAAATAT
83105427 TAATATAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
ATATTTATAAATTGAAATAT
Found at i:83107554 original size:64 final size:64
Alignment explanation
Indices: 83107467--83107608 Score: 205
Period size: 64 Copynumber: 2.2 Consensus size: 64
83107457 TATCAATGTT
* * * *
83107467 TTTAAATA-TTTCTCATATATATTTATAGTCTAATTTTTAGTTTCTTGATAAATTATATACACA
1 TTTAAATATTTTCACATATATATTTATAGTCTAATTTTTAATTTCTTAATAAATTATATAAACA
*
83107530 TTTAAATATTTTCACATATATATTTATTGTCTAATTTTTAATTTCTTAATAAATTATATAAACA
1 TTTAAATATTTTCACATATATATTTATAGTCTAATTTTTAATTTCTTAATAAATTATATAAACA
**
83107594 TGCAAATATATTTCA
1 TTTAAATAT-TTTCA
83107609 ATTACATTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
63 8 0.11
64 57 0.81
65 5 0.07
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (64 bp):
TTTAAATATTTTCACATATATATTTATAGTCTAATTTTTAATTTCTTAATAAATTATATAAACA
Found at i:83110262 original size:12 final size:12
Alignment explanation
Indices: 83110245--83110270 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83110235 ATGTAAGTTG
83110245 AACTTCTTTAAA
1 AACTTCTTTAAA
83110257 AACTTCTTTAAA
1 AACTTCTTTAAA
83110269 AA
1 AA
83110271 AAAAAACCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (12 bp):
AACTTCTTTAAA
Found at i:83110277 original size:18 final size:20
Alignment explanation
Indices: 83110254--83110293 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
83110244 GAACTTCTTT
83110254 AAAAA-CTTCTTTAAA-AAA
1 AAAAACCTTCTTTAAAGAAA
83110272 AAAAACCTTCTTTAAAGAAA
1 AAAAACCTTCTTTAAAGAAA
83110292 AA
1 AA
83110294 GAAAAAACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.60, C:0.12, G:0.03, T:0.25
Consensus pattern (20 bp):
AAAAACCTTCTTTAAAGAAA
Found at i:83112340 original size:22 final size:25
Alignment explanation
Indices: 83112309--83112365 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
83112299 AATTAATACC
*
83112309 AATATTTTTATAAATA-TAATAAATT
1 AATATTTAT-TAAATATTAATAAATT
83112334 -ATATTTATTTAAATATTAATAAATT
1 AATATTTA-TTAAATATTAATAAATT
83112359 AATATTT
1 AATATTT
83112366 TTCACGTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 12 0.43
25 10 0.36
26 6 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
AATATTTATTAAATATTAATAAATT
Found at i:83112346 original size:24 final size:26
Alignment explanation
Indices: 83112309--83112367 Score: 88
Period size: 25 Copynumber: 2.3 Consensus size: 26
83112299 AATTAATACC
83112309 AATATTTTTATAAATA-TAATAAATT
1 AATATTTTTATAAATATTAATAAATT
83112334 -ATATTTATT-TAAATATTAATAAATT
1 AATATTT-TTATAAATATTAATAAATT
83112359 AATATTTTT
1 AATATTTTT
83112368 CACGTACATT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
24 12 0.39
25 13 0.42
26 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
AATATTTTTATAAATATTAATAAATT
Found at i:83113592 original size:26 final size:26
Alignment explanation
Indices: 83113534--83113592 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
83113524 CAAACTATTC
83113534 GGTTAAACTTGAAATTGAATAAAAAT
1 GGTTAAACTTGAAATTGAATAAAAAT
**
83113560 GACTAAACTTGAAATTGAATAAAAAT
1 GGTTAAACTTGAAATTGAATAAAAAT
83113586 GGTTAAA
1 GGTTAAA
83113593 TTGCATGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.51, C:0.05, G:0.15, T:0.29
Consensus pattern (26 bp):
GGTTAAACTTGAAATTGAATAAAAAT
Found at i:83114086 original size:114 final size:114
Alignment explanation
Indices: 83113874--83114096 Score: 374
Period size: 114 Copynumber: 2.0 Consensus size: 114
83113864 TATGCCTTAA
* *
83113874 TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATGAATTAACATAACG
1 TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATAAATTAACATAACA
**
83113939 TCGATCATTGATTGAGCTATTCTGAATTATTACTGCAAATCAGTTTTGT
66 TCGATCATTGATTGAGCTATTCTGAACCATTACTGCAAATCAGTTTTGT
*
83113988 TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATAAATTGACATAACA
1 TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATAAATTAACATAACA
** *
83114053 TCGATCATTGATTGAGCTATTCTGGGCCGTTACTGCAAATCAGT
66 TCGATCATTGATTGAGCTATTCTGAACCATTACTGCAAATCAGT
83114097 CCTATAAGTT
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
114 101 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (114 bp):
TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATAAATTAACATAACA
TCGATCATTGATTGAGCTATTCTGAACCATTACTGCAAATCAGTTTTGT
Found at i:83116000 original size:40 final size:41
Alignment explanation
Indices: 83115931--83116023 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 41
83115921 CGAAAGTGTT
* * *
83115931 TGGCACTAAGTGTGCGATTTAATAAAGCTTCGGCTACA-AA
1 TGGCACTAAGTGTGCGAATTAACAAAGCTTCAGCTACATAA
** * *
83115971 TGGCACTAAGTGTGCGAATTGGCATAGCTTCAGCTATATAA
1 TGGCACTAAGTGTGCGAATTAACAAAGCTTCAGCTACATAA
*
83116012 -GGCACCAAGTGT
1 TGGCACTAAGTGT
83116024 ACGATATCGA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 42 0.95
41 2 0.05
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAATTAACAAAGCTTCAGCTACATAA
Found at i:83118123 original size:47 final size:45
Alignment explanation
Indices: 83118049--83118172 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 45
83118039 ATGGTTGAGT
* *
83118049 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTA-AGATGT-AACTAGGC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTATAGATGTGAAC---GC
* *
83118095 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGC
1 -TCCGAGCTCGTTGAGTTGAGTCCGAGTT--CGTATAGATGTGAACGC
83118143 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGT
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGT
83118173 TTATGGGCGG
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
44 2 0.03
46 27 0.40
47 26 0.38
48 2 0.03
49 3 0.04
50 5 0.07
51 3 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTATAGATGTGAACGC
Found at i:83121966 original size:21 final size:21
Alignment explanation
Indices: 83121942--83121987 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
83121932 TCTGTTTAAC
* *
83121942 CTTATTGGTTTCCGTTCAACT
1 CTTATGGGTTTCCATTCAACT
* *
83121963 CTTATGGGTTTTCATTCAGCT
1 CTTATGGGTTTCCATTCAACT
83121984 CTTA
1 CTTA
83121988 CGAGCTTCTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (21 bp):
CTTATGGGTTTCCATTCAACT
Found at i:83124909 original size:20 final size:20
Alignment explanation
Indices: 83124876--83124915 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
83124866 AAGTGTATAC
*
83124876 AGAGGCAACAAAGTGCAAAT
1 AGAGGCAACAAAGTACAAAT
* *
83124896 AGAGGCATCGAAGTACAAAT
1 AGAGGCAACAAAGTACAAAT
83124916 CTTGTACAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.15, G:0.25, T:0.12
Consensus pattern (20 bp):
AGAGGCAACAAAGTACAAAT
Found at i:83127723 original size:20 final size:20
Alignment explanation
Indices: 83127695--83127733 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
83127685 TCCTAACTTG
* *
83127695 AAATTTTTTAATTTTTTCCT
1 AAATGTTTTAATTTATTCCT
*
83127715 AAATGTTTTGATTTATTCC
1 AAATGTTTTAATTTATTCC
83127734 GAATTGGTCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.59
Consensus pattern (20 bp):
AAATGTTTTAATTTATTCCT
Found at i:83128613 original size:20 final size:19
Alignment explanation
Indices: 83128574--83128623 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 19
83128564 TTGGTGTAGG
83128574 AATATCGATACCTTAGGAA
1 AATATCGATACCTTAGGAA
83128593 ATATATCGATACCTT-GAGAA
1 A-ATATCGATACCTTAG-GAA
83128613 AAGTATCGATA
1 AA-TATCGATA
83128624 TCGGATCGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (19 bp):
AATATCGATACCTTAGGAA
Found at i:83131162 original size:28 final size:27
Alignment explanation
Indices: 83131130--83131256 Score: 77
Period size: 28 Copynumber: 4.6 Consensus size: 27
83131120 AGAAAATTTA
*
83131130 TTAAATTTTAATAAAACTATA-AAAAAAT
1 TTAAAATTTAATAAAA--ATAGAAAAAAT
*
83131158 TTAAAATTTATTAAAAATAGAAAAAAT
1 TTAAAATTTAATAAAAATAGAAAAAAT
**
83131185 TATAAAAATTT--TAAAAA-ATTAAAAAT
1 T-T-AAAATTTAATAAAAATAGAAAAAAT
*
83131211 TGTAAAATATT-ATAAAAATCATAAAAAAGT
1 T-TAAAAT-TTAATAAAAAT-AGAAAAAA-T
* *
83131241 ATAAAATAT-ATAAAAA
1 TTAAAATTTAATAAAAA
83131257 AAAATCCCGT
Statistics
Matches: 83, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
25 5 0.06
26 14 0.17
27 20 0.24
28 23 0.28
29 20 0.24
30 1 0.01
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (27 bp):
TTAAAATTTAATAAAAATAGAAAAAAT
Found at i:83131163 original size:9 final size:9
Alignment explanation
Indices: 83131113--83131228 Score: 51
Period size: 10 Copynumber: 12.3 Consensus size: 9
83131103 AATAAATAAT
*
83131113 AAAATTTAG
1 AAAATTTAA
*
83131122 AAAATTTATT
1 AAAATTTA-A
*
83131132 AAATTTTAA
1 AAAATTTAA
*
83131141 TAAAACTATAAA
1 -AAAA-T-TTAA
83131153 AAAATTT--
1 AAAATTTAA
83131160 AAAATTTATTA
1 AAAATTTA--A
**
83131171 AAAATAGAA
1 AAAATTTAA
83131180 AAAATTATAA
1 AAAATT-TAA
*
83131190 AAATTTTAA
1 AAAATTTAA
83131199 AAAA-TT-A
1 AAAATTTAA
83131206 AAAATTGTAA
1 AAAATT-TAA
*
83131216 AATATTATAA
1 AAAATT-TAA
83131226 AAA
1 AAA
83131229 TCATAAAAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 23
0.68 0.13 0.19
Matches are distributed among these distances:
7 12 0.15
8 3 0.04
9 22 0.28
10 29 0.36
11 11 0.14
12 3 0.04
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (9 bp):
AAAATTTAA
Found at i:83131200 original size:19 final size:19
Alignment explanation
Indices: 83131132--83131246 Score: 85
Period size: 19 Copynumber: 6.1 Consensus size: 19
83131122 AAAATTTATT
*
83131132 AAATTTTAATAAAACTATAAA
1 AAATTTTAA-AAAATTAT-AA
* *
83131153 AAAATTT-AAAATTTATTAA
1 AAATTTTAAAAAATTA-TAA
**
83131172 AAA-TAGAAAAAATTATAA
1 AAATTTTAAAAAATTATAA
83131190 AAATTTTAAAAAA-T-TAA
1 AAATTTTAAAAAATTATAA
* *
83131207 AAATTGTAAAATATTATAA
1 AAATTTTAAAAAATTATAA
** *
83131226 AAATCATAAAAAAGTATAA
1 AAATTTTAAAAAATTATAA
83131245 AA
1 AA
83131247 TATATAAAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
17 14 0.19
18 9 0.12
19 44 0.59
20 2 0.03
21 6 0.08
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (19 bp):
AAATTTTAAAAAATTATAA
Found at i:83131246 original size:9 final size:9
Alignment explanation
Indices: 83131152--83131256 Score: 74
Period size: 9 Copynumber: 11.6 Consensus size: 9
83131142 AAAACTATAA
83131152 AAAAATT-T
1 AAAAATTAT
*
83131160 AAAATTTATT
1 AAAAATTA-T
*
83131170 AAAAA-TAGA
1 AAAAATTA-T
83131179 AAAAATTAT
1 AAAAATTAT
*
83131188 AAAAATTTT
1 AAAAATTAT
*
83131197 AAAAAAT-T
1 AAAAATTAT
*
83131205 AAAAATTGT
1 AAAAATTAT
83131214 AAAATATTAT
1 AAAA-ATTAT
*
83131224 AAAAATCAT
1 AAAAATTAT
*
83131233 AAAAAAGTAT
1 -AAAAATTAT
83131243 -AAAATATAT
1 AAAAAT-TAT
83131252 AAAAA
1 AAAAA
83131257 AAAATCCCGT
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
8 17 0.22
9 33 0.43
10 26 0.34
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:83131253 original size:19 final size:18
Alignment explanation
Indices: 83131169--83131257 Score: 90
Period size: 19 Copynumber: 4.8 Consensus size: 18
83131159 TAAAATTTAT
*
83131169 TAAAAATAGAAAAAATTA
1 TAAAAATATAAAAAATTA
*
83131187 TAAAAATTTTAAAAAATTA
1 TAAAAA-TATAAAAAATTA
* * *
83131206 -AAAATTGTAAAATATTA
1 TAAAAATATAAAAAATTA
*
83131223 TAAAAATCATAAAAAAGTA
1 TAAAAAT-ATAAAAAATTA
83131242 TAAAATATATAAAAAA
1 TAAAA-ATATAAAAAA
83131258 AAATCCCGTT
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
17 10 0.17
18 15 0.26
19 31 0.53
20 2 0.03
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (18 bp):
TAAAAATATAAAAAATTA
Found at i:83131506 original size:19 final size:19
Alignment explanation
Indices: 83131472--83131574 Score: 77
Period size: 19 Copynumber: 5.4 Consensus size: 19
83131462 AAAATTTTAT
*
83131472 ATTTCTATACATTTTTATAA
1 ATTTTTATA-ATTTTTATAA
*
83131492 ATTTTTATGATTTTTATAA
1 ATTTTTATAATTTTTATAA
* * **
83131511 AATTTTATAATTTTTTTTT
1 ATTTTTATAATTTTTATAA
83131530 ATTTTT-TACGATTTTTAT--
1 ATTTTTATA--ATTTTTATAA
*
83131548 ATTTTTCTAATTTTTAATAA
1 ATTTTTATAATTTTT-ATAA
*
83131568 AATTTTA
1 ATTTTTA
83131575 ATATATTAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
17 6 0.09
18 10 0.15
19 31 0.47
20 19 0.29
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTTTTATAATTTTTATAA
Found at i:83131516 original size:29 final size:28
Alignment explanation
Indices: 83131457--83131608 Score: 98
Period size: 29 Copynumber: 5.4 Consensus size: 28
83131447 TTATTTCGAC
* * * *
83131457 TTTATAAAATTTTATATTTCTATACATT
1 TTTATAAATTTTTATATTTTTATAAAAT
83131485 TTTATAAATTTTTATGATTTTTATAAAAT
1 TTTATAAATTTTTAT-ATTTTTATAAAAT
* * **
83131514 TTTATAATTTTTTTTTATTTTT-TACGAT
1 TTTATAA-ATTTTTATATTTTTATAAAAT
* *
83131542 TTT-TATATTTTTCTAATTTTTAATAAAAT
1 TTTATAAATTTTTAT-ATTTTT-ATAAAAT
* *
83131571 TTTA-ATA-TATTA-ATTTTTATTAAAAT
1 TTTATAAATTTTTATATTTTTA-TAAAAT
*
83131597 TTAATAATATTT
1 TTTATAA-ATTT
83131609 ATAACTTTTA
Statistics
Matches: 96, Mismatches: 18, Indels: 19
0.72 0.14 0.14
Matches are distributed among these distances:
25 1 0.01
26 21 0.22
27 9 0.09
28 25 0.26
29 34 0.35
30 6 0.06
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (28 bp):
TTTATAAATTTTTATATTTTTATAAAAT
Found at i:83131526 original size:10 final size:9
Alignment explanation
Indices: 83131466--83131633 Score: 71
Period size: 10 Copynumber: 18.4 Consensus size: 9
83131456 CTTTATAAAA
83131466 TTTTAT-AT
1 TTTTATAAT
*
83131474 TTCTATACAT
1 TTTTATA-AT
83131484 TTTTATAAAT
1 TTTTAT-AAT
*
83131494 TTTTATGAT
1 TTTTATAAT
*
83131503 TTTTATAAAA
1 TTTTAT-AAT
83131513 TTTTATAATT
1 TTTTATAA-T
* *
83131523 TTTTTTTAT
1 TTTTATAAT
83131532 TTTT-TACGAT
1 TTTTATA--AT
83131542 TTTTAT-AT
1 TTTTATAAT
*
83131550 TTTTCTAAT
1 TTTTATAAT
*
83131559 TTTTAATAAA
1 TTTT-ATAAT
*
83131569 ATTT-TAAT
1 TTTTATAAT
* *
83131577 ATAT-TAAT
1 TTTTATAAT
*
83131585 TTTTATTAAAA
1 TTTTA-T-AAT
*
83131596 TTTAATAAT
1 TTTTATAAT
* *
83131605 ATTTATAAC
1 TTTTATAAT
*
83131614 TTTTA-ATT
1 TTTTATAAT
83131622 TTTTAT-AT
1 TTTTATAAT
83131630 TTTT
1 TTTT
83131634 TTTCTAATTT
Statistics
Matches: 119, Mismatches: 27, Indels: 28
0.68 0.16 0.16
Matches are distributed among these distances:
8 36 0.30
9 33 0.28
10 42 0.35
11 8 0.07
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:83131584 original size:26 final size:26
Alignment explanation
Indices: 83131555--83131607 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
83131545 TATATTTTTC
83131555 TAATTTTTAATAAAATTTTAAT-ATAT
1 TAATTTTTAATAAAA-TTTAATAATAT
*
83131581 TAATTTTTATTAAAATTTAATAATAT
1 TAATTTTTAATAAAATTTAATAATAT
83131607 T
1 T
83131608 TATAACTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
TAATTTTTAATAAAATTTAATAATAT
Done.