Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 276 of 335
Found at i:83641038 original size:17 final size:17
Alignment explanation
Indices: 83641009--83641051 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
83640999 TGCCTGGCCC
* *
83641009 AAACCCAATTATCCTTT
1 AAACCCAACTATCCCTT
*
83641026 AAATCCAACTATCCCTT
1 AAACCCAACTATCCCTT
83641043 AAACCCAAC
1 AAACCCAAC
83641052 AACCTAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.26
Consensus pattern (17 bp):
AAACCCAACTATCCCTT
Found at i:83641541 original size:2 final size:2
Alignment explanation
Indices: 83641536--83641580 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
83641526 TTTTTTTGGT
83641536 TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
83641577 TA TA
1 TA TA
83641581 CGAAGTAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:83642762 original size:189 final size:185
Alignment explanation
Indices: 83642323--83642867 Score: 886
Period size: 189 Copynumber: 3.0 Consensus size: 185
83642313 ATTATGTTAC
* * *
83642323 TTTGCTAC-TTTTTAATATTATTAATACATTCTATTTATTTTTTTGTGCTGCATTACAATTTTTA
1 TTTGCTACTTTTTTAATATTATTAATATATTCTATTTA-TTTTTTGTACTGCATTATAATTTTTA
*
83642387 TTATCATATTATATTTAGTATTGCTTTAATATTATGTTAAGTATTATATTTTA-T--TATTATTA
65 TTATCATATTATATTTAGTATTGCTTTAATATTATGTTAACTATTATATTTTATTACTATTATTA
*
83642449 TTATTACATTATTAGTA-ATTATTTTATTATTTTCCTTTTTTATTGTTACTTATCA
130 TTATTACATTATTAGTACATTATTTTATTATTTTTCTTTTTTATTGTTACTTATCA
83642504 TTTGCTACTTTTTTAATATTATTAATATATTCTATTTATTTTTTGTACTGCATTATAATTTTTAT
1 TTTGCTACTTTTTTAATATTATTAATATATTCTATTTATTTTTTGTACTGCATTATAATTTTTAT
*
83642569 TATCACATTATATTTAGTATTGCTTTAATATTATGTTAACTATTATATTTTATTACTATTATTAT
66 TATCATATTATATTTAGTATTGCTTTAATATTATGTTAACTATTATATTTTATTACTATTATTAT
* * *
83642634 TATTATCACATTCTTAGTACATTATTTTAATATTTTTCTTTTTTATTGTTACTTATTA
131 TA-T-T-ACATTATTAGTACATTATTTTATTATTTTTCTTTTTTATTGTTACTTATCA
* * *
83642692 TTTGCTACTTTTTTTAATATTATTAATATATTCTATTTATTTCTTGTACTGGATTATAATTATTA
1 TTTGCTAC-TTTTTTAATATTATTAATATATTCTATTTATTTTTTGTACTGCATTATAATTTTTA
*
83642757 TTATCATATTATATTTAGTATTGCTTTAATATTATATTAACTATTATATTTTATTACTATTATTA
65 TTATCATATTATATTTAGTATTGCTTTAATATTATGTTAACTATTATATTTTATTACTATTATTA
83642822 TTATTACATTATTAGTACATTATTTTATTA-TTTTCTTTTTTATTGT
130 TTATTACATTATTAGTACATTATTTTATTATTTTTCTTTTTTATTGT
83642868 AAATATTATT
Statistics
Matches: 339, Mismatches: 16, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
181 83 0.24
182 29 0.09
184 11 0.03
185 17 0.05
186 24 0.07
187 12 0.04
188 44 0.13
189 119 0.35
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (185 bp):
TTTGCTACTTTTTTAATATTATTAATATATTCTATTTATTTTTTGTACTGCATTATAATTTTTAT
TATCATATTATATTTAGTATTGCTTTAATATTATGTTAACTATTATATTTTATTACTATTATTAT
TATTACATTATTAGTACATTATTTTATTATTTTTCTTTTTTATTGTTACTTATCA
Found at i:83642811 original size:17 final size:16
Alignment explanation
Indices: 83642744--83642825 Score: 58
Period size: 17 Copynumber: 4.6 Consensus size: 16
83642734 CTTGTACTGG
83642744 ATTATAATTATTATTATCAT
1 ATTAT-ATTA-TATTA-C-T
*
83642764 ATTATATTTAGTATTGCT
1 ATTATA-TTA-TATTACT
83642782 -TTAATATTATATTAACT
1 ATT-ATATTATATT-ACT
*
83642799 ATTATATTTTATTACT
1 ATTATATTATATTACT
83642815 ATTATTATTAT
1 ATTA-TATTAT
83642826 TACATTATTA
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
16 11 0.21
17 21 0.40
18 6 0.12
19 2 0.04
20 12 0.23
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.57
Consensus pattern (16 bp):
ATTATATTATATTACT
Found at i:83642832 original size:14 final size:15
Alignment explanation
Indices: 83642786--83642835 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
83642776 ATTGCTTTAA
83642786 TATTA-TATTAACTAT
1 TATTATTATT-ACTAT
*
83642801 TATATTTTATTACTAT
1 TAT-TATTATTACTAT
83642817 TATTATTATTAC-AT
1 TATTATTATTACTAT
83642831 TATTA
1 TATTA
83642836 GTACATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 7 0.23
15 11 0.35
16 9 0.29
17 4 0.13
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTATTATTACTAT
Found at i:83642908 original size:13 final size:13
Alignment explanation
Indices: 83642890--83642915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83642880 TCTTATTTTA
83642890 ATATTTTAATATT
1 ATATTTTAATATT
83642903 ATATTTTAATATT
1 ATATTTTAATATT
83642916 TTTCATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATATTTTAATATT
Found at i:83655148 original size:66 final size:66
Alignment explanation
Indices: 83654953--83655148 Score: 302
Period size: 66 Copynumber: 3.0 Consensus size: 66
83654943 ATTACAACTC
* **
83654953 TCTTCTCCCTGAAATGGCGTTGGAGCAGCTAGAAGCCACAACAAATCTCCTTGAAGTTTCAGTAA
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAAATCTCCTTGAAGTTTCAGCGA
83655018 A
66 A
*
83655019 TCTTCTCCCTGAAATGGCGTTGGAACGGCTAGAAGCCACAACAAATCTCCTTGAAGTTTCAGCGA
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAAATCTCCTTGAAGTTTCAGCGA
83655084 A
66 A
* * * * * *
83655085 TCTTCTCCCTGAAATAGCATTGGAGCGGCTCGAAGTCACAGCAGATCTCCTTGAAGTTTCAGCG
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAAATCTCCTTGAAGTTTCAGCG
83655149 GAGTAGATTG
Statistics
Matches: 119, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 119 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (66 bp):
TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAAATCTCCTTGAAGTTTCAGCGA
A
Found at i:83655545 original size:17 final size:17
Alignment explanation
Indices: 83655523--83655646 Score: 168
Period size: 16 Copynumber: 7.5 Consensus size: 17
83655513 GCCCGGCCCA
83655523 AAACCCAACTATCCCTT
1 AAACCCAACTATCCCTT
*
83655540 AAACCCAACTATCCC-A
1 AAACCCAACTATCCCTT
*
83655556 AAACCCAACTATCCATT
1 AAACCCAACTATCCCTT
83655573 AAACCCAACTATCCCTT
1 AAACCCAACTATCCCTT
83655590 AAA-CCAACTATCCC--
1 AAACCCAACTATCCCTT
*
83655604 AAAACCAAGCTATCCCTT
1 AAACCCAA-CTATCCCTT
*
83655622 AAACCCAACTATCCC-A
1 AAACCCAACTATCCCTT
83655638 AAACCCAAC
1 AAACCCAAC
83655647 AACCCAAAAC
Statistics
Matches: 96, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
14 3 0.03
15 4 0.04
16 41 0.43
17 41 0.43
18 7 0.07
ACGTcount: A:0.41, C:0.40, G:0.01, T:0.18
Consensus pattern (17 bp):
AAACCCAACTATCCCTT
Found at i:83655556 original size:33 final size:32
Alignment explanation
Indices: 83655519--83655658 Score: 160
Period size: 33 Copynumber: 4.3 Consensus size: 32
83655509 ATTTGCCCGG
83655519 CCCAAAACCCAACTATCCCTTAAACCCAACTAT
1 CCCAAAACCCAACTATCCC-TAAACCCAACTAT
*
83655552 CCCAAAACCCAACTATCCATTAAACCCAACTAT
1 CCCAAAACCCAACTATCC-CTAAACCCAACTAT
* *
83655585 CCCTTAAA-CCAACTATCCC-AAAACCAAGCTAT
1 CCC-AAAACCCAACTATCCCTAAACCCAA-CTAT
* * *
83655617 CCCTTAAACCCAACTATCCCAAAACCCAAC-AA
1 CCC-AAAACCCAACTATCCCTAAACCCAACTAT
83655649 CCCAAAACCC
1 CCCAAAACCC
83655659 TTTTAACCTT
Statistics
Matches: 95, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
31 13 0.14
32 16 0.17
33 56 0.59
34 10 0.11
ACGTcount: A:0.41, C:0.42, G:0.01, T:0.16
Consensus pattern (32 bp):
CCCAAAACCCAACTATCCCTAAACCCAACTAT
Found at i:83655561 original size:16 final size:16
Alignment explanation
Indices: 83655519--83655658 Score: 162
Period size: 16 Copynumber: 8.6 Consensus size: 16
83655509 ATTTGCCCGG
83655519 CCCAAAACCCAACTAT
1 CCCAAAACCCAACTAT
*
83655535 CCCTTAAACCCAACTAT
1 CCC-AAAACCCAACTAT
83655552 CCCAAAACCCAACTAT
1 CCCAAAACCCAACTAT
83655568 -CCATTAAACCCAACTAT
1 CCCA--AAACCCAACTAT
*
83655585 CCCTTAAA-CCAACTAT
1 CCC-AAAACCCAACTAT
83655601 CCCAAAA-CCAAGCTAT
1 CCCAAAACCCAA-CTAT
*
83655617 CCCTTAAACCCAACTAT
1 CCC-AAAACCCAACTAT
*
83655634 CCCAAAACCCAAC-AA
1 CCCAAAACCCAACTAT
83655649 CCCAAAACCC
1 CCCAAAACCC
83655659 TTTTAACCTT
Statistics
Matches: 109, Mismatches: 7, Indels: 17
0.82 0.05 0.13
Matches are distributed among these distances:
15 21 0.19
16 42 0.39
17 40 0.37
18 6 0.06
ACGTcount: A:0.41, C:0.42, G:0.01, T:0.16
Consensus pattern (16 bp):
CCCAAAACCCAACTAT
Found at i:83655617 original size:49 final size:49
Alignment explanation
Indices: 83655523--83655657 Score: 204
Period size: 49 Copynumber: 2.8 Consensus size: 49
83655513 GCCCGGCCCA
83655523 AAACCCAACTATCCCTTAAACCCAACTATCCCAAAACCCAACTATCCATT
1 AAACCCAACTATCCCTTAAACCCAACTATCCCAAAA-CCAACTATCCATT
*
83655573 AAACCCAACTATCCCTTAAA-CCAACTATCCCAAAACCAAGCTATCCCTT
1 AAACCCAACTATCCCTTAAACCCAACTATCCCAAAACCAA-CTATCCATT
* *
83655622 AAACCCAACTATCCC-AAAACCCAAC-AACCCAAAACC
1 AAACCCAACTATCCCTTAAACCCAACTATCCCAAAACC
83655658 CTTTTAACCT
Statistics
Matches: 80, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
48 17 0.21
49 43 0.54
50 20 0.25
ACGTcount: A:0.42, C:0.41, G:0.01, T:0.16
Consensus pattern (49 bp):
AAACCCAACTATCCCTTAAACCCAACTATCCCAAAACCAACTATCCATT
Found at i:83656143 original size:4 final size:4
Alignment explanation
Indices: 83656134--83656267 Score: 178
Period size: 4 Copynumber: 33.5 Consensus size: 4
83656124 TTTTTTTGGT
* * *
83656134 TATA TATA TATA TATA TGTA TATA TATA TACA TATG TATA TATA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * *
83656182 TATA TGTA TATA TATA CATA TATA TATA TATA CATA TATA TATA TACA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * *
83656230 TATA TGTA TATA TATA TACA TATG TATA TATA TATA TA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TA
83656268 CGAAGTAAAA
Statistics
Matches: 110, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 110 1.00
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (4 bp):
TATA
Found at i:83656143 original size:6 final size:6
Alignment explanation
Indices: 83656134--83656267 Score: 178
Period size: 6 Copynumber: 22.3 Consensus size: 6
83656124 TTTTTTTGGT
* * *
83656134 TATATA TATATA TATATG TATATA TATATA CATATG TATATA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
* * * *
83656182 TATATG TATATA TATACA TATATA TATATA TACATA TATATA TATACA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
* * *
83656230 TATATG TATATA TATATA CATATG TATATA TATATA TA
1 TATATA TATATA TATATA TATATA TATATA TATATA TA
83656268 CGAAGTAAAA
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 108 1.00
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (6 bp):
TATATA
Found at i:83657133 original size:14 final size:15
Alignment explanation
Indices: 83657104--83657136 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
83657094 TTAAGTATTA
83657104 TATT-TTATTACTAT
1 TATTATTATTACTAT
83657118 TATTATTATTAC-AT
1 TATTATTATTACTAT
83657132 TATTA
1 TATTA
83657137 GTACATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTATTACTAT
Found at i:83657308 original size:17 final size:18
Alignment explanation
Indices: 83657281--83657326 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
83657271 TATTACGTTA
*
83657281 ACTATTA-TATT-TTATT
1 ACTATTATTATTATTATC
83657297 ACTATTATTATTATTATC
1 ACTATTATTATTATTATC
83657315 AC-ATTATTATTA
1 ACTATTATTATTA
83657327 CATTTTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 7 0.26
17 14 0.52
18 6 0.22
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.57
Consensus pattern (18 bp):
ACTATTATTATTATTATC
Found at i:83657459 original size:186 final size:185
Alignment explanation
Indices: 83656982--83657522 Score: 869
Period size: 184 Copynumber: 2.9 Consensus size: 185
83656972 AATATGATTA
*
83656982 TGTTACTTATTATTTGCTAC-TTTTTAATATTATTAATACATTCTATTTATTTTTTTGTACTGCA
1 TGTTACTTATTATTTGCTACTTTTTTAATATTATTAATATATTCTATTTA-TTTTTTGTACTGCA
* *
83657046 TTACAATTTTTATTATCATATTATATTTAGTATTGCTTTAATATTATGTTAAGTATTATATTTTA
65 TTATAATTTTTATTATCATATTATATTTAGTATTGCTTTAATATTATGTTAACTATTATATTTTA
*
83657111 TTACTATTATTATTA-T-TACATTATTAGTACATTATTTTATTATTTTCCTTTTTTAT
130 TTACTATTATTATTATTATACATTATTATTAC--TATTTTATTATTTTCCTTTTTTAT
*
83657167 TGTTACTTATCATTTGCTA-TTTTTTAATATTATTAATATATTCTATTTATTTTTTGTACTGCAT
1 TGTTACTTATTATTTGCTACTTTTTTAATATTATTAATATATTCTATTTATTTTTTGTACTGCAT
* *
83657231 TATAATTTTTATTATCACATTATATTTAGTATTGCTTTAATATTACGTTAACTATTATATTTTAT
66 TATAATTTTTATTATCATATTATATTTAGTATTGCTTTAATATTATGTTAACTATTATATTTTAT
83657296 TACTATTATTATTATTATCACATTATTATTAC-ATTTTATTATTTTCCTTTTTTAT
131 TACTATTATTATTATTAT-ACATTATTATTACTATTTTATTATTTTCCTTTTTTAT
*
83657351 TGTTACTTATTATTTGCTACTTGTTTTAATATTATTAATATATTCTATTTATTTCTTGTACTGCA
1 TGTTACTTATTATTTGCTACTT-TTTTAATATTATTAATATATTCTATTTATTTTTTGTACTGCA
* * *
83657416 TTATAATTATTATTATCATATTATATTTAGTATTGCTTTAATATTATATGAACTATTATATTTTA
65 TTATAATTTTTATTATCATATTATATTTAGTATTGCTTTAATATTATGTTAACTATTATATTTTA
* *
83657481 TTACTATTATTATTATTAT-TATTATTATTATTATTATTATTA
130 TTACTATTATTATTATTATACATTATTATTACTATT-TTATTA
83657523 CTACATTATT
Statistics
Matches: 332, Mismatches: 16, Indels: 15
0.91 0.04 0.04
Matches are distributed among these distances:
184 141 0.42
185 52 0.16
186 127 0.38
187 12 0.04
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.59
Consensus pattern (185 bp):
TGTTACTTATTATTTGCTACTTTTTTAATATTATTAATATATTCTATTTATTTTTTGTACTGCAT
TATAATTTTTATTATCATATTATATTTAGTATTGCTTTAATATTATGTTAACTATTATATTTTAT
TACTATTATTATTATTATACATTATTATTACTATTTTATTATTTTCCTTTTTTAT
Found at i:83657493 original size:3 final size:3
Alignment explanation
Indices: 83657469--83657584 Score: 95
Period size: 3 Copynumber: 41.3 Consensus size: 3
83657459 TTATATGAAC
*
83657469 TAT TA- TAT T-T TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
83657515 TAT TAT TAC TA- CAT TAT TAG TA- CAT TAT T-T TAT TAT T-T TCT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
83657558 T-T TAT TGT AAA TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
83657585 CTAATATTCT
Statistics
Matches: 92, Mismatches: 14, Indels: 14
0.77 0.12 0.12
Matches are distributed among these distances:
2 14 0.15
3 78 0.85
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:83665971 original size:130 final size:130
Alignment explanation
Indices: 83665740--83666361 Score: 642
Period size: 130 Copynumber: 4.8 Consensus size: 130
83665730 GTGCAATAGT
** * * *
83665740 TGATTTAATATCATAGTTGATATTATTAAGGCTCACTAATTTTTGATTACAACCTAAGTTCATTG
1 TGATTTAATATCATAGTTGATATTATTAAGGCTCGTTGATTTATGATCACAACCTAAGTTCATTG
* * * * * * *
83665805 ATTTACTATCATAAACAATCTTCTCTAAGTTAGTTGATTTAGTATCGCTACTCCAAATAGCTTGT
66 ATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTCGC
* * * *
83665870 TGATTTAATATAATAGTTGATATTATTAAGGCACGTTGAATTATGATTACAACCTAAGTTCATTG
1 TGATTTAATATCATAGTTGATATTATTAAGGCTCGTTGATTTATGATCACAACCTAAGTTCATTG
* * * * * * * * *
83665935 ATTTACTATCATGAATAATATTCTCTAAGTTAGTTGATTTACTATAGTTATTTCAGATAGCTCAC
66 ATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTCGC
*** * * *
83666000 TGATTTAAGGCCACAGTTGATATTATTAAGGCTCGTTGATTTATGGTCACAA-CTCAAGTTTATT
1 TGATTTAATATCATAGTTGATATTATTAAGGCTCGTTGATTTATGATCACAACCT-AAGTTCATT
* * * * * * *
83666064 GATTTACTATCATGAACAATCTTCTCTGAGTTTGCTGATTTATTATCGCTACTCCAAACAACCCA
65 GATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTCG
83666129 C
130 C
** ** * ** *
83666130 T-AGTTTAATATCACGGAAGATATTATTAAGGCTCGTTGATTTATAATCACGGCCTAAATTCATT
1 TGA-TTTAATATCATAGTTGATATTATTAAGGCTCGTTGATTTATGATCACAACCTAAGTTCATT
* * * * *
83666194 GATTTACTATTACGAATAATCATCTCTAAGTTAGTTGATTTACTATTGCTACTCCAAACAACTTG
65 GATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTCG
83666259 -
130 C
* ** * * * * *
83666259 TGATATAATATCATAGTTGATATTATTAAGGCTCACTGATTTACGATAACAACCAAAGTTTATTT
1 TGATTTAATATCATAGTTGATATTATTAAGGCTCGTTGATTTATGATCACAACCTAAGTTCATTG
*
83666324 ATTTACAATCATGAATAATCCTTC-CTAAGTT-GTTGATT
66 ATTTACTATCATGAATAAT-CTTCTCTAAGTTAGTTGATT
83666362 CACAATAATA
Statistics
Matches: 400, Mismatches: 87, Indels: 12
0.80 0.17 0.02
Matches are distributed among these distances:
128 7 0.02
129 73 0.18
130 318 0.80
131 2 0.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (130 bp):
TGATTTAATATCATAGTTGATATTATTAAGGCTCGTTGATTTATGATCACAACCTAAGTTCATTG
ATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTCGC
Found at i:83670004 original size:73 final size:73
Alignment explanation
Indices: 83669790--83670002 Score: 392
Period size: 73 Copynumber: 2.9 Consensus size: 73
83669780 AAATGTTTAT
83669790 TTTTAATACAAATGAAAGTCGGGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
1 TTTTAATACAAATGAAAGTCGGGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
83669855 AAATTAGC
66 AAATTAGC
* * *
83669863 TTTTAATACAAATGAAAGTCGGGGATACTTAAAAAGGATGGATGTATACATATACATGCTTGTAA
1 TTTTAATACAAATGAAAGTCGGGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
83669928 AAATTAGC
66 AAATTAGC
83669936 TTTTAATACAAATGAAAGTC-GGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
1 TTTTAATACAAATGAAAGTCGGGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
83670000 AAA
66 AAA
83670003 ATATCTTCAT
Statistics
Matches: 134, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
72 44 0.33
73 90 0.67
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (73 bp):
TTTTAATACAAATGAAAGTCGGGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
AAATTAGC
Found at i:83672803 original size:17 final size:18
Alignment explanation
Indices: 83672761--83672809 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
83672751 AGTTGAAAAG
83672761 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
83672780 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
83672797 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
83672810 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:83673696 original size:40 final size:40
Alignment explanation
Indices: 83673630--83673796 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
83673620 AAATTGAATG
* * *
83673630 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
83673669 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
83673709 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
83673749 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
83673789 ATATCCGG
1 ATATCCGG
83673797 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:83680807 original size:17 final size:18
Alignment explanation
Indices: 83680765--83680813 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
83680755 AGTTGAAAAG
83680765 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
83680784 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
83680801 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
83680814 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:83681694 original size:40 final size:38
Alignment explanation
Indices: 83681628--83681792 Score: 154
Period size: 39 Copynumber: 4.2 Consensus size: 38
83681618 AAATTGAATG
* * *
83681628 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTGG-TATT
* * **
83681667 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCTGGTATT
83681706 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGCCCGAAGGCAATT-GTGCTG-G-TATT
* * **
83681745 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCTGGT-ATT
83681785 ATATCCGG
1 ATATCCGG
83681793 TTATATTCCG
Statistics
Matches: 103, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
37 3 0.03
38 14 0.14
39 43 0.42
40 41 0.40
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTGGTATT
Found at i:83681759 original size:78 final size:78
Alignment explanation
Indices: 83681628--83681776 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 78
83681618 AAATTGAATG
*
83681628 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
83681693 TTGTGCTAGTGGT
66 TTGTGCTAGTGGT
* * ** *
83681706 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
83681769 ATTTGTGC
64 AATTGTGC
83681777 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 4 0.06
78 58 0.94
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGT
Found at i:83689248 original size:40 final size:40
Alignment explanation
Indices: 83689161--83689372 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
83689151 CCTTCGGAAT
* * *
83689161 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
83689200 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
83689240 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
83689280 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
83689320 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
83689360 TTAGCCCGGATAT
1 TTAACCCGGATAT
83689373 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:83689286 original size:80 final size:80
Alignment explanation
Indices: 83689161--83689372 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
83689151 CCTTCGGAAT
* * * ** * ***
83689161 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
83689225 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
83689240 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
83689305 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
83689320 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
83689373 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:83691141 original size:21 final size:21
Alignment explanation
Indices: 83691080--83691141 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
83691070 AATATGCAAT
* *
83691080 ATAATATAAAGAAAAATAAATTA
1 ATAA-ATAAA-AAGAATAAAGTA
*
83691103 ATAAATAAAAAGACTAAAGTA
1 ATAAATAAAAAGAATAAAGTA
*
83691124 ATAAA-AAAATGGAATAAA
1 ATAAATAAAA-AGAATAAA
83691142 ATTTAGGACA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 4 0.12
21 20 0.61
22 5 0.15
23 4 0.12
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.21
Consensus pattern (21 bp):
ATAAATAAAAAGAATAAAGTA
Found at i:83699252 original size:49 final size:46
Alignment explanation
Indices: 83699183--83699448 Score: 213
Period size: 46 Copynumber: 5.7 Consensus size: 46
83699173 GTAAGGTGCT
*
83699183 GATGCCATGTCCCAGACATAGTCTTACACTAGCTATCATCTTCGAGGCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGC-ATCATC-TCGAGGCC
* *
83699232 GATGCCATGTCCCAGACATAGTCTTACA-TTGACA-CATCTCGTA-GTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAG-CATCATCTCG-AGGCC
* * * * *
83699278 AATG-CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCAT-CATCTCGAGGCC
* * * **
83699324 GATG-CATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATACC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCA-TCATCTCGAGGCC
* * * *
83699370 GATGCCATGTCCCAGACATCGTCTTACACTGGCACCCATAAT-GTGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCA-TCAT-CTCGAGGCC
* *
83699418 GATG-CATGTCCCATACATGTCGTACACTAGC
1 GATGCCATGTCCCAGACATGTCTTACACTAGC
83699449 TCACCCAAAT
Statistics
Matches: 178, Mismatches: 29, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 66 0.37
47 32 0.18
48 25 0.14
49 30 0.17
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCATCATCTCGAGGCC
Found at i:83699444 original size:140 final size:141
Alignment explanation
Indices: 83699183--83699445 Score: 320
Period size: 140 Copynumber: 1.9 Consensus size: 141
83699173 GTAAGGTGCT
* * *
83699183 GATGCCATGTCCCAGACATAGTCTTACACTAGCTATCATCTTCGAGGCTGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATAGTCTTACACTAGCTATCATCTTCAAGACCGATGCCATGTCCCAGA
* * * *
83699248 CATAGTCTTACATTGACACATCTCGTAGTCAATGCATGTCCCAAACATGTCTTACACTGGCTTAC
66 CATAGTCTTACATGGACACATATCGTAGCCAATGCATGTCCCAAACATGTCGTACACTGGCTTAC
83699313 GTCTCGAGGCC
131 GTCTCGAGGCC
* * *
83699324 GATG-CATGTCCTAGACAT-GTCTTACACTAGC-ACTCGTC-TCAATACCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATAGTCTTACACTAGCTA-TCATCTTCAAGACCGATGCCATGTCCCAG
* * * * *
83699385 ACATCGTCTTACACTGGCACCCATAAT-GTGGCCGATGCATGTCCCATACATGTCGTACACT
65 ACATAGTCTTACA-TGG-ACACAT-ATCGTAGCCAATGCATGTCCCAAACATGTCGTACACT
83699446 AGCTCACCCA
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
138 32 0.31
139 19 0.18
140 47 0.46
141 5 0.05
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATAGTCTTACACTAGCTATCATCTTCAAGACCGATGCCATGTCCCAGA
CATAGTCTTACATGGACACATATCGTAGCCAATGCATGTCCCAAACATGTCGTACACTGGCTTAC
GTCTCGAGGCC
Found at i:83699454 original size:48 final size:47
Alignment explanation
Indices: 83699368--83699459 Score: 116
Period size: 47 Copynumber: 1.9 Consensus size: 47
83699358 CGTCTCAATA
*
83699368 CCGATGCCATGTCCCAGACATCGTCTTACACTGGCACCCATAATGTGG
1 CCGATGCCATGTCCCAGACATCGTCGTACACTGGCACCCA-AATGTGG
* *
83699416 CCGATG-CATGTCCCATACAT-GTCGTACACTAGCTCACCCAAATG
1 CCGATGCCATGTCCCAGACATCGTCGTACACT-G-GCACCCAAATG
83699460 ACCCAAATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
46 9 0.23
47 18 0.46
48 12 0.31
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATCGTCGTACACTGGCACCCAAATGTGG
Found at i:83702612 original size:6 final size:6
Alignment explanation
Indices: 83702601--83702639 Score: 51
Period size: 6 Copynumber: 6.0 Consensus size: 6
83702591 CAAAAGTAAT
83702601 AATAAA AATAAAAA AATAAAA AATAAA AATAAA AATAAA
1 AATAAA AAT--AAA AAT-AAA AATAAA AATAAA AATAAA
83702640 CTTTCTAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 18 0.58
7 7 0.23
8 6 0.19
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:83707400 original size:49 final size:49
Alignment explanation
Indices: 83707329--83707780 Score: 750
Period size: 49 Copynumber: 9.3 Consensus size: 49
83707319 GTATGAGGTA
* *
83707329 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
83707378 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
83707427 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
83707476 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
83707525 TTTATATTTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
83707574 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATCTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
83707623 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* * * *
83707672 TATATATGTGGTAAGGCCTAATGGCCGATGTGAAGAATGTG-AA-CGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* * * *
83707719 TATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
83707766 TATAAATGTGATAAG
1 TATATATGTGATAAG
83707781 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 55 0.14
48 4 0.01
49 324 0.85
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
Found at i:83717918 original size:13 final size:13
Alignment explanation
Indices: 83717900--83717926 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
83717890 GAGTGACCCA
83717900 CACTTGTAGCAGC
1 CACTTGTAGCAGC
83717913 CACTTGTAGCAGC
1 CACTTGTAGCAGC
83717926 C
1 C
83717927 CTTCTCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.22
Consensus pattern (13 bp):
CACTTGTAGCAGC
Found at i:83720767 original size:13 final size:13
Alignment explanation
Indices: 83720745--83720777 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
83720735 AAGGATTTGT
83720745 TTAT-TAAACTAA
1 TTATCTAAACTAA
83720757 TTATCTAAACTAA
1 TTATCTAAACTAA
*
83720770 TTAACTAA
1 TTATCTAA
83720778 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:83722203 original size:46 final size:47
Alignment explanation
Indices: 83721975--83722287 Score: 206
Period size: 46 Copynumber: 6.6 Consensus size: 47
83721965 GCATTTATCA
* * *
83721975 ATGCCATGTCCCAGACATGGTCTTACATTGGCTA-TCATCTTCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-TACTCATC-TCGA-GCCG
* * * *
83722024 ATGCCATGTCCTAGACATGGTCTTACACTAGTTCTCACATATCCGTGCC-
1 ATGCCATGTCCCAGACATGGTCTTACACTAGTACT--CATCT-CGAGCCG
* *
83722073 ATTGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTAACCG
1 A-TGCCATGTCCCAGACATGGTCTTACACTAGTACTCATCTCG-AGCCG
* * *
83722120 ATG-CATGTCTCAGACAT-GTCTTACACT-G-GCTTACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGTAC-T-CATCTCGA-GCCG
* * *
83722166 ATG-CATGTCCCAGACAT-GTCTTACACTAGTACTCGTCTCAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGTACTCATCTCGA-GCCG
* *
83722212 ATGTCATGTCCCA-AGCATGGTCTTACACTAGCT-CTCATAAT-GCAGCCG
1 ATGCCATGTCCCAGA-CATGGTCTTACACTAG-TACTCAT-CTCG-AGCCG
* *
83722260 ATG-GATGTCCCAGAC-TTGTCTTACACTA
1 ATGCCATGTCCCAGACATGGTCTTACACTA
83722288 CCTCACCCAA
Statistics
Matches: 216, Mismatches: 29, Indels: 41
0.76 0.10 0.14
Matches are distributed among these distances:
44 12 0.06
45 16 0.07
46 69 0.32
47 24 0.11
48 26 0.12
49 34 0.16
50 30 0.14
51 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGTACTCATCTCGAGCCG
Found at i:83728248 original size:25 final size:25
Alignment explanation
Indices: 83728202--83728249 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
83728192 AACTTTTCTT
*
83728202 TAGGTAAAATCGACAAAGCAAAAAG
1 TAGGTAAAATCGACAAACCAAAAAG
* *
83728227 TAGGTTAAATCGA-AAACCCAAAA
1 TAGGTAAAATCGACAAACCAAAAA
83728250 CCAAAACCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.54, C:0.15, G:0.17, T:0.15
Consensus pattern (25 bp):
TAGGTAAAATCGACAAACCAAAAAG
Found at i:83728716 original size:51 final size:51
Alignment explanation
Indices: 83728656--83728758 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
83728646 TGTACTGATG
*
83728656 CAGTACATAACAGATTAAATGCAGCCAAGCTGCTAAAATATAGGCGTTAAA
1 CAGTACATAACAGATTAAATGCAGCCAAGCTGCCAAAATATAGGCGTTAAA
*
83728707 CAGTACATAACAGATTAAATGCAGCCAAGCTGCCAAAATATAGGCTTTAAA
1 CAGTACATAACAGATTAAATGCAGCCAAGCTGCCAAAATATAGGCGTTAAA
83728758 C
1 C
83728759 GCCTTTCAGA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (51 bp):
CAGTACATAACAGATTAAATGCAGCCAAGCTGCCAAAATATAGGCGTTAAA
Found at i:83729671 original size:46 final size:44
Alignment explanation
Indices: 83729604--83729712 Score: 139
Period size: 46 Copynumber: 2.4 Consensus size: 44
83729594 TAATTAGTTT
83729604 AGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCCAGTGTA
1 AGACATGTCTGGGACATGCATCGG-CTACGAGACGT--GCCAGTGTA
* * * *
83729650 AGACATGTCTGAGACATGCATCGGTTACGAGATGTGTCAGTGTA
1 AGACATGTCTGGGACATGCATCGGCTACGAGACGTGCCAGTGTA
83729694 AGACCATGTCTGGGACATG
1 AGA-CATGTCTGGGACATG
83729713 GCAATGGCAC
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
44 11 0.20
45 15 0.27
46 30 0.54
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
AGACATGTCTGGGACATGCATCGGCTACGAGACGTGCCAGTGTA
Found at i:83733977 original size:107 final size:106
Alignment explanation
Indices: 83733838--83734085 Score: 325
Period size: 107 Copynumber: 2.3 Consensus size: 106
83733828 CCCACCATCA
*** * *
83733838 CGATGGCTGAGATCCTACATATGTTTTTGATTCTCGACAACTTGTATGAGCATCATCGTGAACTG
1 CGATGGCTGAGATCCTACATATGTTGCGGATTCTCAACAACTTGTATGAGCAGCATCGTGAACTG
* *
83733903 GTGAATTGAATGGCTACTCTATTATGAAGACATAGACCGTTT
66 GTGAATTGAATGACTACTCTATTATGAAGACATAGACC-ATT
* * * *
83733945 CGATAGCTAAGATCCTACATATGTTGCGGATTCTCAACAGCTTGTGTGAGCAGCATCGTGAACTG
1 CGATGGCTGAGATCCTACATATGTTGCGGATTCTCAACAACTTGTATGAGCAGCATCGTGAACTG
* * *
83734010 GTGAATTGAATGACTACTTTATTATGATGATATAGACCATT
66 GTGAATTGAATGACTACTCTATTATGAAGACATAGACCATT
* * *
83734051 CTGATGGCTGAGATCTTGCATATATTGCGGATTCT
1 C-GATGGCTGAGATCCTACATATGTTGCGGATTCT
83734086 TGTCAGCTTG
Statistics
Matches: 121, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
106 3 0.02
107 118 0.98
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (106 bp):
CGATGGCTGAGATCCTACATATGTTGCGGATTCTCAACAACTTGTATGAGCAGCATCGTGAACTG
GTGAATTGAATGACTACTCTATTATGAAGACATAGACCATT
Found at i:83734093 original size:107 final size:107
Alignment explanation
Indices: 83733838--83734114 Score: 306
Period size: 107 Copynumber: 2.6 Consensus size: 107
83733828 CCCACCATCA
* * * *** * * * *
83733838 CGATGGCTGAGATCCTACATATGTTTTTGATTCTCGACAACTTGTATGAGCATCATCGTGAACTG
1 CGATAGCTAAGATCCTACATATATTGCGGATTCTCAACAGCTTGTGTGAGCAGCATCGTGAACTG
* *
83733903 GTGAATTGAATGGCTACTCTATTATGAAGACATAGACCGTTT
66 GTGAATTGAATGACTACTCTATTATGAAGACATAGACCATTT
*
83733945 CGATAGCTAAGATCCTACATATGTTGCGGATTCTCAACAGCTTGTGTGAGCAGCATCGTGAACTG
1 CGATAGCTAAGATCCTACATATATTGCGGATTCTCAACAGCTTGTGTGAGCAGCATCGTGAACTG
* * *
83734010 GTGAATTGAATGACTACTTTATTATGATGATATAGACCA-TT
66 GTGAATTGAATGACTACTCTATTATGAAGACATAGACCATTT
* * * * *** *
83734051 CTGATGGCTGAGATCTTGCATATATTGCGGATTCTTGTCAGCTTGTGTGAACAGTC-TCGTGAAC
1 C-GATAGCTAAGATCCTACATATATTGCGGATTCTCAACAGCTTGTGTGAGCAG-CATCGTGAAC
83734115 CCTATGAAAA
Statistics
Matches: 145, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
106 3 0.02
107 141 0.97
108 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (107 bp):
CGATAGCTAAGATCCTACATATATTGCGGATTCTCAACAGCTTGTGTGAGCAGCATCGTGAACTG
GTGAATTGAATGACTACTCTATTATGAAGACATAGACCATTT
Found at i:83735266 original size:19 final size:19
Alignment explanation
Indices: 83735242--83735280 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
83735232 ATTAAATGGA
83735242 GTTAGTAGATAATTATGAT
1 GTTAGTAGATAATTATGAT
83735261 GTTAGTAGATAATTATGAT
1 GTTAGTAGATAATTATGAT
83735280 G
1 G
83735281 ATTCATCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (19 bp):
GTTAGTAGATAATTATGAT
Found at i:83738757 original size:26 final size:26
Alignment explanation
Indices: 83738721--83738856 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
83738711 CATGAAATTC
*
83738721 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
83738747 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
83738773 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
83738799 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
83738825 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
83738851 TTATCA
1 TTATCA
83738857 ATTTGTATCA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:83739307 original size:24 final size:25
Alignment explanation
Indices: 83739275--83739330 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
83739265 CAGCTTGAAA
*
83739275 GAGCATCCCATTATTAGC-CTTCTC
1 GAGCATCCCATTAATAGCTCTTCTC
* *
83739299 GAGCTTCCCATTAATAGCTCTTC-G
1 GAGCATCCCATTAATAGCTCTTCTC
83739323 GAGCATCC
1 GAGCATCC
83739331 TAATTGGTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.30
Consensus pattern (25 bp):
GAGCATCCCATTAATAGCTCTTCTC
Found at i:83741421 original size:13 final size:13
Alignment explanation
Indices: 83741400--83741429 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
83741390 TCTTTAGGCG
*
83741400 AGCCGCAGCCCCC
1 AGCCCCAGCCCCC
83741413 AGCCCCAGCCCCC
1 AGCCCCAGCCCCC
83741426 AGCC
1 AGCC
83741430 TACAGCACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.63, G:0.20, T:0.00
Consensus pattern (13 bp):
AGCCCCAGCCCCC
Found at i:83741601 original size:14 final size:13
Alignment explanation
Indices: 83741562--83741604 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
83741552 GAAAATAAGA
*
83741562 TTTCTTGTATTTT
1 TTTCTTGTATATT
83741575 TTTCTTGTATATT
1 TTTCTTGTATATT
*
83741588 TTTCTTGATTTATT
1 TTTCTTG-TATATT
83741602 TTT
1 TTT
83741605 GCTATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 19 0.70
14 8 0.30
ACGTcount: A:0.12, C:0.07, G:0.07, T:0.74
Consensus pattern (13 bp):
TTTCTTGTATATT
Found at i:83741610 original size:25 final size:26
Alignment explanation
Indices: 83741562--83741610 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
83741552 GAAAATAAGA
*
83741562 TTTCTTGTATTTTTTTCTTGTATATT
1 TTTCTTGTATTTATTTCTTGTATATT
83741588 TTTCTTG-ATTTATTT-TTGCTATA
1 TTTCTTGTATTTATTTCTTG-TATA
83741611 AAAAGGCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 11 0.52
26 7 0.33
ACGTcount: A:0.14, C:0.08, G:0.08, T:0.69
Consensus pattern (26 bp):
TTTCTTGTATTTATTTCTTGTATATT
Found at i:83745232 original size:24 final size:25
Alignment explanation
Indices: 83745161--83745305 Score: 242
Period size: 24 Copynumber: 5.9 Consensus size: 25
83745151 ACATGATCAT
*
83745161 AACATTTACCTAACCATTATCATGA
1 AACATTTACCTAACCATTATCATGG
83745186 AACATTTACCTAACCCATTATCATGG
1 AACATTTACCTAA-CCATTATCATGG
83745212 AACA-TTACCTAACCATTATCAT-G
1 AACATTTACCTAACCATTATCATGG
83745235 AACATTTACCTAACCATTATCATGG
1 AACATTTACCTAACCATTATCATGG
83745260 AACATTTACCTAACCATTATCAT-G
1 AACATTTACCTAACCATTATCATGG
*
83745284 AACATTTACCTAACCTTTATCA
1 AACATTTACCTAACCATTATCA
83745306 ATTTGTATCA
Statistics
Matches: 115, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
23 5 0.04
24 50 0.43
25 45 0.39
26 15 0.13
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (25 bp):
AACATTTACCTAACCATTATCATGG
Found at i:83745304 original size:49 final size:49
Alignment explanation
Indices: 83745161--83745305 Score: 256
Period size: 49 Copynumber: 2.9 Consensus size: 49
83745151 ACATGATCAT
83745161 AACATTTACCTAACCATTATCATGAAACATTTACCTAACCCATTATCATGG
1 AACATTTACCTAACCATTATCATG-AACATTTACCTAA-CCATTATCATGG
83745212 AACA-TTACCTAACCATTATCATGAACATTTACCTAACCATTATCATGG
1 AACATTTACCTAACCATTATCATGAACATTTACCTAACCATTATCATGG
*
83745260 AACATTTACCTAACCATTATCATGAACATTTACCTAACCTTTATCA
1 AACATTTACCTAACCATTATCATGAACATTTACCTAACCATTATCA
83745306 ATTTGTATCA
Statistics
Matches: 92, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
48 16 0.17
49 53 0.58
50 19 0.21
51 4 0.04
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (49 bp):
AACATTTACCTAACCATTATCATGAACATTTACCTAACCATTATCATGG
Found at i:83752214 original size:26 final size:26
Alignment explanation
Indices: 83752185--83752337 Score: 254
Period size: 26 Copynumber: 5.9 Consensus size: 26
83752175 CATGAAATTC
*
83752185 TTATCATAAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
83752211 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
83752237 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
83752263 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
83752289 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
83752315 TTATCATG-AACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
83752338 TTTATCAATT
Statistics
Matches: 120, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 15 0.12
26 105 0.88
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:83752795 original size:26 final size:26
Alignment explanation
Indices: 83752757--83752808 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
83752747 TATTATTTTA
*
83752757 TATATATAATTTCTTTTAAATCTATT
1 TATATATAATTTCTTTCAAATCTATT
*
83752783 TATATATATTTTCTTTCAAATCTATT
1 TATATATAATTTCTTTCAAATCTATT
83752809 ATGTACATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.58
Consensus pattern (26 bp):
TATATATAATTTCTTTCAAATCTATT
Found at i:83752853 original size:30 final size:31
Alignment explanation
Indices: 83752779--83752863 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 31
83752769 CTTTTAAATC
* * *
83752779 TATTTAT-ATATATT-TTCTTTCAAATCTAT
1 TATTTATCATATTTTATTCTTTAAAATATAT
* *
83752808 TATGTA-CATAGTTTATTCTTTAAAATATAT
1 TATTTATCATATTTTATTCTTTAAAATATAT
*
83752838 T-TTTATCATATTTTATTATTTAAAAT
1 TATTTATCATATTTTATTCTTTAAAAT
83752864 TCTTTCATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
29 13 0.29
30 32 0.71
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (31 bp):
TATTTATCATATTTTATTCTTTAAAATATAT
Found at i:83755548 original size:24 final size:25
Alignment explanation
Indices: 83755521--83755572 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
83755511 GCCTAGCCTC
*
83755521 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
**
83755545 TTTTGGTAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
83755570 TTT
1 TTT
83755573 CGCACTACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:83755647 original size:21 final size:22
Alignment explanation
Indices: 83755623--83755680 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
83755613 AATGAGTATA
*
83755623 TCATGGCATATCATGTGCAT-C
1 TCATGACATATCATGTGCATAC
83755644 TCATGACATATCATGTGCATAC
1 TCATGACATATCATGTGCATAC
*
83755666 -CATGTCATATCATGT
1 TCATGACATATCATGT
83755681 ATTAACAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 33 0.97
22 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (22 bp):
TCATGACATATCATGTGCATAC
Found at i:83755680 original size:10 final size:10
Alignment explanation
Indices: 83755620--83755680 Score: 68
Period size: 10 Copynumber: 5.9 Consensus size: 10
83755610 TATAATGAGT
*
83755620 ATATCATGGC
1 ATATCATGTC
83755630 ATATCATGTGC
1 ATATCATGT-C
* *
83755641 ATCTCATGAC
1 ATATCATGTC
83755651 ATATCATGTGC
1 ATATCATGT-C
*
83755662 ATACCATGTC
1 ATATCATGTC
83755672 ATATCATGT
1 ATATCATGT
83755681 ATTAACAATA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 25 0.60
11 17 0.40
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (10 bp):
ATATCATGTC
Found at i:83763705 original size:24 final size:25
Alignment explanation
Indices: 83763678--83763729 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
83763668 GCCTAGCCTC
*
83763678 TTTTAAT-AACAGGGGCAAAGCCCT
1 TTTTAATAAACAGGGGAAAAGCCCT
** *
83763702 TTTTGGTAAACTGGGGAAAAGCCCT
1 TTTTAATAAACAGGGGAAAAGCCCT
83763727 TTT
1 TTT
83763730 CGCACTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
TTTTAATAAACAGGGGAAAAGCCCT
Found at i:83763804 original size:21 final size:22
Alignment explanation
Indices: 83763780--83763837 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
83763770 AATGAGTATA
*
83763780 TCATGGCATATCATGTGCAT-C
1 TCATGACATATCATGTGCATAC
83763801 TCATGACATATCATGTGCATAC
1 TCATGACATATCATGTGCATAC
*
83763823 -CATGTCATATCATGT
1 TCATGACATATCATGT
83763838 ATAACAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 33 0.97
22 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (22 bp):
TCATGACATATCATGTGCATAC
Found at i:83763837 original size:10 final size:10
Alignment explanation
Indices: 83763777--83763837 Score: 68
Period size: 10 Copynumber: 5.9 Consensus size: 10
83763767 TATAATGAGT
*
83763777 ATATCATGGC
1 ATATCATGTC
83763787 ATATCATGTGC
1 ATATCATGT-C
* *
83763798 ATCTCATGAC
1 ATATCATGTC
83763808 ATATCATGTGC
1 ATATCATGT-C
*
83763819 ATACCATGTC
1 ATATCATGTC
83763829 ATATCATGT
1 ATATCATGT
83763838 ATAACAATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 25 0.60
11 17 0.40
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (10 bp):
ATATCATGTC
Found at i:83768557 original size:18 final size:18
Alignment explanation
Indices: 83768534--83768570 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
83768524 TCGTAGGCCA
* *
83768534 AAAATAATATTTTTTAAT
1 AAAATAAAATGTTTTAAT
83768552 AAAATAAAATGTTTTAAT
1 AAAATAAAATGTTTTAAT
83768570 A
1 A
83768571 GGTGATCTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
AAAATAAAATGTTTTAAT
Found at i:83769068 original size:26 final size:26
Alignment explanation
Indices: 83769032--83769093 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
83769022 AGAAAGGTAC
83769032 GTATATGAAATAAGCTATAATGTTGA
1 GTATATGAAATAAGCTATAATGTTGA
* *
83769058 GTATATGAAATGAGCTATGATGTTGA
1 GTATATGAAATAAGCTATAATGTTGA
*
83769084 ATATAT-AAAT
1 GTATATGAAAT
83769094 GGATAGTATG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 4 0.12
26 29 0.88
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35
Consensus pattern (26 bp):
GTATATGAAATAAGCTATAATGTTGA
Found at i:83777227 original size:25 final size:24
Alignment explanation
Indices: 83777193--83777239 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
83777183 TAAAAGAGAT
83777193 AAAAAAATTCTTATAAAAATATTA
1 AAAAAAATTCTTATAAAAATATTA
83777217 AAAAAATATTCTTATAAAAATAT
1 AAAAAA-ATTCTTATAAAAATAT
83777240 AATCTAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (24 bp):
AAAAAAATTCTTATAAAAATATTA
Found at i:83777237 original size:14 final size:14
Alignment explanation
Indices: 83777191--83777239 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
83777181 TGTAAAAGAG
*
83777191 ATAAAAAAATTCTT
1 ATAAAAATATTCTT
83777205 ATAAAAATA---TT
1 ATAAAAATATTCTT
*
83777216 AAAAAAATATTCTT
1 ATAAAAATATTCTT
83777230 ATAAAAATAT
1 ATAAAAATAT
83777240 AATCTAATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
11 10 0.34
14 19 0.66
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAAAAATATTCTT
Found at i:83780502 original size:123 final size:123
Alignment explanation
Indices: 83780296--83780545 Score: 500
Period size: 123 Copynumber: 2.0 Consensus size: 123
83780286 CTTGATATTC
83780296 AAATGTTTGAACTTTTCCAATACTTTCTCGATGTAGTGAGATTGGCTTAGTGCAAAGCCTCTTTT
1 AAATGTTTGAACTTTTCCAATACTTTCTCGATGTAGTGAGATTGGCTTAGTGCAAAGCCTCTTTT
83780361 ATGCTTTTTCATCTTTATAACTAGAATTGTATCTACCTTGTTAAGATCCTTCATCTTA
66 ATGCTTTTTCATCTTTATAACTAGAATTGTATCTACCTTGTTAAGATCCTTCATCTTA
83780419 AAATGTTTGAACTTTTCCAATACTTTCTCGATGTAGTGAGATTGGCTTAGTGCAAAGCCTCTTTT
1 AAATGTTTGAACTTTTCCAATACTTTCTCGATGTAGTGAGATTGGCTTAGTGCAAAGCCTCTTTT
83780484 ATGCTTTTTCATCTTTATAACTAGAATTGTATCTACCTTGTTAAGATCCTTCATCTTA
66 ATGCTTTTTCATCTTTATAACTAGAATTGTATCTACCTTGTTAAGATCCTTCATCTTA
83780542 AAAT
1 AAAT
83780546 TCAAGGCTAG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
123 127 1.00
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.43
Consensus pattern (123 bp):
AAATGTTTGAACTTTTCCAATACTTTCTCGATGTAGTGAGATTGGCTTAGTGCAAAGCCTCTTTT
ATGCTTTTTCATCTTTATAACTAGAATTGTATCTACCTTGTTAAGATCCTTCATCTTA
Found at i:83788099 original size:50 final size:50
Alignment explanation
Indices: 83788024--83788250 Score: 346
Period size: 50 Copynumber: 4.5 Consensus size: 50
83788014 CCATGGCAAC
* * *
83788024 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGG
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
*
83788074 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATAAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
*
83788124 AAGTAATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* *
83788174 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* * **
83788224 CAACTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTAATAGCTTCGGCTAC
83788251 CTGATCAGTG
Statistics
Matches: 163, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 141 0.87
51 22 0.13
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
Found at i:83788266 original size:31 final size:31
Alignment explanation
Indices: 83788228--83788431 Score: 302
Period size: 31 Copynumber: 6.6 Consensus size: 31
83788218 AAATGACAAC
83788228 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
83788259 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* * *
83788290 TGAAAAGTGGTAGCTTCTGCTACCTAATAAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
83788321 TGAAAAGTGGTAGCTTCTGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* * * *
83788352 TGAAAAATGGTAGCTCCGACTACCTGATCAA
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
83788383 TGAAAA-TGGTAGCTCCGGCTACCTGATCAA
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
83788413 TGAATAGTGGTAGCTTCGG
1 TGAAAAGTGGTAGCTTCGG
83788432 TGTGATATAT
Statistics
Matches: 159, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
30 28 0.18
31 131 0.82
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Found at i:83788503 original size:46 final size:49
Alignment explanation
Indices: 83788451--83788576 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 49
83788441 TGCTACTGTA
* * * *
83788451 TAAGACCATATCTGGGATATGTCATC-A-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGACATCGATATGAGATATGTGATTACGTG
* *
83788497 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGACATCGATATGAGATATGTGATTACGTG
*
83788546 TAAGACTATAGCTGGGCTATGACATCGATAT
1 TAAGACCATAGCTGGGCTATGACATCGATAT
83788577 ATGAAGATGT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
46 23 0.33
47 1 0.01
48 13 0.19
49 33 0.47
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGACATCGATATGAGATATGTGATTACGTG
Found at i:83804684 original size:27 final size:26
Alignment explanation
Indices: 83804646--83804703 Score: 107
Period size: 27 Copynumber: 2.2 Consensus size: 26
83804636 TGTATTAAGC
83804646 ATAAATTTTTTGTTGGAAAAAAGGGGA
1 ATAAATTTTTTGTTGGAAAAAA-GGGA
83804673 ATAAATTTTTTGTTGGAAAAAAGGGA
1 ATAAATTTTTTGTTGGAAAAAAGGGA
83804699 ATAAA
1 ATAAA
83804704 ACTTTGCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.45, C:0.00, G:0.22, T:0.33
Consensus pattern (26 bp):
ATAAATTTTTTGTTGGAAAAAAGGGA
Found at i:83805038 original size:8 final size:8
Alignment explanation
Indices: 83805025--83805064 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
83805015 TTTATTTAAT
*
83805025 TTTTAATA
1 TTTTAAAA
83805033 TTTTAAAA
1 TTTTAAAA
83805041 TTTTAAAA
1 TTTTAAAA
83805049 -TTTAAAA
1 TTTTAAAA
83805056 TTATTAAAA
1 TT-TTAAAA
83805065 AAGTATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 7 0.24
8 16 0.55
9 6 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TTTTAAAA
Found at i:83805052 original size:15 final size:16
Alignment explanation
Indices: 83805034--83805064 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
83805024 TTTTTAATAT
83805034 TTTAAAATT-TTAAAA
1 TTTAAAATTATTAAAA
83805049 TTTAAAATTATTAAAA
1 TTTAAAATTATTAAAA
83805065 AAGTATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAAAATTATTAAAA
Found at i:83806453 original size:2 final size:2
Alignment explanation
Indices: 83806448--83806482 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
83806438 ATGTTTCGTT
83806448 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
83806483 GCATGCTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:83812102 original size:19 final size:19
Alignment explanation
Indices: 83812078--83812137 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 19
83812068 ACAAAATAAC
83812078 TCAAAATAATTTTTAAAAT
1 TCAAAATAATTTTTAAAAT
*
83812097 TCAAAAT-ATTTATAAAAAT
1 TCAAAATAATTT-TTAAAAT
83812116 TCCAAAATTTATATTTTTAAAA
1 T-CAAAA--TA-ATTTTTAAAA
83812138 AATAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
18 4 0.12
19 14 0.42
20 5 0.15
22 1 0.03
23 5 0.15
24 4 0.12
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.42
Consensus pattern (19 bp):
TCAAAATAATTTTTAAAAT
Found at i:83812265 original size:3 final size:3
Alignment explanation
Indices: 83812257--83812296 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
83812247 CTAAAGTATC
83812257 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
83812297 GATGCTTTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:83812596 original size:3 final size:3
Alignment explanation
Indices: 83812588--83812629 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
83812578 ATTCTCCCTA
83812588 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
83812630 ATAAATCTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:83812708 original size:3 final size:3
Alignment explanation
Indices: 83812700--83812751 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
83812690 AAGATTAAAA
83812700 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
83812748 ATT A
1 ATT A
83812752 GCCATAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:83825347 original size:3 final size:3
Alignment explanation
Indices: 83825339--83825385 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
83825329 AATTTGGATG
83825339 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
83825386 TCGTATGTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:83826729 original size:2 final size:2
Alignment explanation
Indices: 83826722--83826746 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
83826712 CCTTGTTAAT
83826722 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
83826747 TCTACATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:83830799 original size:20 final size:20
Alignment explanation
Indices: 83830769--83830813 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
83830759 CTGTTTTGTT
83830769 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
83830788 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
83830808 ATGGGC
1 ATGGGC
83830814 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:83832469 original size:3 final size:3
Alignment explanation
Indices: 83832461--83832771 Score: 170
Period size: 3 Copynumber: 99.7 Consensus size: 3
83832451 GTTTCTTTAC
*
83832461 TTA TTA TTA -CA TTA TTAA TTGA TCTA TTA TT- TCTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TT-A TT-A T-TA TTA TTA T-TA TTA TTA TTA TTA
* * * ** * *
83832507 TTCA CTA TTA CTA TTA TTT TCTA ACA TTA TTA TTA CTA TTA CTA TTA
1 TT-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
83832554 TTTA TTTA TTTA TT- TATA TCA TTG TTG TTA TTA TTA TTA TTCC TGA
1 -TTA -TTA -TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
* *
83832600 TT- TTA TTA TTA TTGG TGTA TTA TTA TTA TTA TTC TTCA TT- TTA TTA
1 TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
* * * *
83832646 TTA TTA TTT TCTA TT- TTA TCA TTTA TTA CTA TTA TTTA TTA TCA TTA
1 TTA TTA TTA T-TA TTA TTA TTA -TTA TTA TTA TTA -TTA TTA TTA TTA
* ** *
83832693 TTA TCA CCA TT- TCCTA CTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA
1 TTA TTA TTA TTA T--TA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
*
83832740 TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
83832772 TATTTGTTTA
Statistics
Matches: 238, Mismatches: 45, Indels: 50
0.71 0.14 0.15
Matches are distributed among these distances:
2 12 0.05
3 186 0.78
4 38 0.16
5 2 0.01
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:83834576 original size:18 final size:18
Alignment explanation
Indices: 83834537--83834609 Score: 92
Period size: 18 Copynumber: 4.1 Consensus size: 18
83834527 CATTTACGGC
** *
83834537 ACTATTCACGTATATGGC
1 ACTATTCACGTATACAGT
*
83834555 ACTATTCATGTATACAGT
1 ACTATTCACGTATACAGT
*
83834573 ACTATTTACGTATACAGT
1 ACTATTCACGTATACAGT
*
83834591 ACTGTTCACGTATACAGT
1 ACTATTCACGTATACAGT
83834609 A
1 A
83834610 GTTGGGATTG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (18 bp):
ACTATTCACGTATACAGT
Found at i:83840072 original size:18 final size:18
Alignment explanation
Indices: 83840046--83840099 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
83840036 AAATAAACAC
* *
83840046 ATAATTATTCAATTAATT
1 ATAACTATTCAAATAATT
83840064 ATAACTATTCAAATAA-T
1 ATAACTATTCAAATAATT
*
83840081 AT---TATTTAAATAATT
1 ATAACTATTCAAATAATT
83840096 ATAA
1 ATAA
83840100 TTCTTTTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
14 10 0.33
15 3 0.10
17 3 0.10
18 14 0.47
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (18 bp):
ATAACTATTCAAATAATT
Found at i:83842021 original size:29 final size:29
Alignment explanation
Indices: 83841927--83841999 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
83841917 GTGACGAGAT
83841927 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83841956 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83841985 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
83842000 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:83849968 original size:29 final size:29
Alignment explanation
Indices: 83849874--83849946 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
83849864 GTGACGAGAT
83849874 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83849903 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83849932 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
83849947 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:83850040 original size:2 final size:2
Alignment explanation
Indices: 83850035--83850060 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
83850025 TGTGTGCGTA
83850035 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
83850061 CTCCGATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83854851 original size:12 final size:13
Alignment explanation
Indices: 83854834--83854863 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
83854824 AATTTAAAAG
83854834 ATAAAAAATT-AA
1 ATAAAAAATTAAA
83854846 ATAAAAAATTAAA
1 ATAAAAAATTAAA
83854859 ATAAA
1 ATAAA
83854864 TTTCTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
ATAAAAAATTAAA
Found at i:83856129 original size:16 final size:16
Alignment explanation
Indices: 83856092--83856131 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
83856082 ATTTTGGCAC
*
83856092 TCTTTTTTTCCTACTT
1 TCTTTTGTTCCTACTT
*
83856108 TC-TTTGTTCCTATTT
1 TCTTTTGTTCCTACTT
83856123 TCTTTTGTT
1 TCTTTTGTT
83856132 TTAGTTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.05, C:0.20, G:0.05, T:0.70
Consensus pattern (16 bp):
TCTTTTGTTCCTACTT
Found at i:83856144 original size:15 final size:15
Alignment explanation
Indices: 83856099--83856146 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
83856089 CACTCTTTTT
*
83856099 TTCCTACTTTCTTTG
1 TTCCTATTTTCTTTG
83856114 TTCCTATTTTCTTTTG
1 TTCCTATTTTC-TTTG
*
83856130 TT-TTAGTTTTCTTTG
1 TTCCTA-TTTTCTTTG
83856145 TT
1 TT
83856147 ATTGTTTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 18 0.62
16 11 0.38
ACGTcount: A:0.06, C:0.17, G:0.08, T:0.69
Consensus pattern (15 bp):
TTCCTATTTTCTTTG
Found at i:83868173 original size:3 final size:3
Alignment explanation
Indices: 83868165--83868217 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
83868155 GCCTTCATTA
83868165 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
83868213 ATC AT
1 ATC AT
83868218 GTGCATCAGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:83868429 original size:26 final size:26
Alignment explanation
Indices: 83868393--83868444 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
83868383 TTATTAAAGT
83868393 AAGATGTTTAATAAATATGAAATTTA
1 AAGATGTTTAATAAATATGAAATTTA
83868419 AAGATGTTTAATAAATATGAAATTTA
1 AAGATGTTTAATAAATATGAAATTTA
83868445 TGATACACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (26 bp):
AAGATGTTTAATAAATATGAAATTTA
Found at i:83868766 original size:6 final size:6
Alignment explanation
Indices: 83868757--83868796 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
83868747 CCCAACCCTA
*
83868757 ATATCT ATATCT ATATCT ATATCT ATATCT TTATCT ATAT
1 ATATCT ATATCT ATATCT ATATCT ATATCT ATATCT ATAT
83868797 AATTTCCATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.53
Consensus pattern (6 bp):
ATATCT
Found at i:83874114 original size:42 final size:43
Alignment explanation
Indices: 83874058--83874152 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
83874048 GAGATTTATG
** * *
83874058 TGTAAGACCATGTCTGGAACATTGGCATC-ATATTTGATTTCA
1 TGTAAGACCATGTCTGGAACAGAGGCATCGATAATTGATTACA
* * *
83874100 TGTAAGACCCTGTCTGGGATAGAGGCATCGATAATTGATTACA
1 TGTAAGACCATGTCTGGAACAGAGGCATCGATAATTGATTACA
83874143 TGTAAGACCA
1 TGTAAGACCA
83874153 CGTTTGGGAC
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 24 0.55
43 20 0.45
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGAACAGAGGCATCGATAATTGATTACA
Found at i:83874170 original size:43 final size:42
Alignment explanation
Indices: 83874014--83874170 Score: 115
Period size: 43 Copynumber: 3.7 Consensus size: 42
83874004 TGTGATTTCG
* * **
83874014 TGTAAGACCACATCTAGGACGTTGGCATCACT--TTGAGATTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCA-TAATT--GA-TTACA
* * * * *
83874058 TGTAAGACCATGTCTGGAACATTGGCATCATATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCATAATTGATTACA
* *
83874100 TGTAAGACC-CTGTCTGGGATAG-AGGCATCGATAATTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATC-ATAATTGATTACA
*
83874143 TGTAAGACCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
83874171 TGTACGAGTC
Statistics
Matches: 88, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
42 25 0.28
43 35 0.40
44 26 0.30
45 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATAATTGATTACA
Found at i:83876636 original size:43 final size:43
Alignment explanation
Indices: 83876585--83876683 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
83876575 TAAGAACTCG
* *
83876585 CACACTTAGTGCAT-AAATTATTAGCTGAAGCTAT-AAGATATCA
1 CACACTTAGTGCATCAAATTA--AACTGAAACTATCAAGATATCA
* * *
83876628 CACACTTAGTGCCATCACATTAAACTGAAACTATCATGGTATCA
1 CACACTTAGTG-CATCAAATTAAACTGAAACTATCAAGATATCA
83876672 CACACTTAGTGC
1 CACACTTAGTGC
83876684 CACATATAGC
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
43 22 0.46
44 21 0.44
45 5 0.10
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.28
Consensus pattern (43 bp):
CACACTTAGTGCATCAAATTAAACTGAAACTATCAAGATATCA
Found at i:83880662 original size:49 final size:50
Alignment explanation
Indices: 83880595--83880841 Score: 273
Period size: 49 Copynumber: 5.0 Consensus size: 50
83880585 AGCTATTGTG
* * * *
83880595 AGGTCACGTGTGTTGTACTAAGTGCATGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
83880645 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * * *
83880695 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
83880745 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * *
83880795 -GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
83880842 CTTCGGCTAC
Statistics
Matches: 162, Mismatches: 33, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
49 78 0.48
50 47 0.29
51 37 0.23
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:83880792 original size:101 final size:98
Alignment explanation
Indices: 83880598--83880836 Score: 307
Period size: 100 Copynumber: 2.4 Consensus size: 98
83880588 TATTGTGAGG
* * * * *
83880598 TCACGTGTGTTGTACTAAGTGCATGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTGGTCACATGTGTAGTACT
* *
83880663 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCGGATAA-TT-GA
* *
83880698 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTT-GGTCACATGTGTAGTAC
* *
83880763 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCGGATAATTGA
* * * * *
83880797 TCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
83880837 GATAGCTTCG
Statistics
Matches: 121, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
99 35 0.29
100 44 0.36
101 42 0.35
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAATTGA
Found at i:83883597 original size:16 final size:15
Alignment explanation
Indices: 83883559--83883597 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
83883549 TGGATTCTCG
*
83883559 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
83883574 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
83883589 TATTCTTGG
1 TA-TCTTGG
83883598 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:83886402 original size:49 final size:49
Alignment explanation
Indices: 83886343--83886577 Score: 296
Period size: 49 Copynumber: 4.8 Consensus size: 49
83886333 TGAGGTCACG
**
83886343 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * *
83886392 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACT--TCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCG--CA
* ** * *
83886441 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-ATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
*
83886490 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
83886539 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
83886578 GCTTCGGCTA
Statistics
Matches: 156, Mismatches: 24, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
47 3 0.02
48 3 0.02
49 144 0.92
50 4 0.03
51 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:83886471 original size:26 final size:26
Alignment explanation
Indices: 83886442--83886521 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
83886432 CTTCGATCAT
83886442 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAGTGCAGGCTACTAC
*
83886468 GTGTA-T-C-AA-TGGTTAGG-T-C-AC
1 GTGTAGTACTAAGT-G-CAGGCTACTAC
83886489 GTGTGTAGTACTAAGTGCAGGCTACTAC
1 --GTGTAGTACTAAGTGCAGGCTACTAC
83886517 GTGTA
1 GTGTA
83886522 CCGGATAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 22
0.63 0.03 0.34
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 9 0.22
24 5 0.12
25 5 0.12
26 14 0.34
27 2 0.05
28 2 0.05
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (26 bp):
GTGTAGTACTAAGTGCAGGCTACTAC
Found at i:83886512 original size:98 final size:97
Alignment explanation
Indices: 83886343--83886576 Score: 328
Period size: 98 Copynumber: 2.4 Consensus size: 97
83886333 TGAGGTCACG
* *
83886343 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACTAAGTG
* *
83886408 CAGGCTACTATGCGTACCTGATAACTTCGAT-CA
66 CAGGCTACTACGCGTACCGGATAA-TT-GATCCA
* *
83886441 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-ATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTT-GGTCACATGTGTAGTACTAAGT
* *
83886505 GCAGGCTACTACGTGTACCGGATAATTGGTCGCA
65 GCAGGCTACTACGCGTACCGGATAATTGATC-CA
* *
83886539 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
83886577 AGCTTCGGCT
Statistics
Matches: 121, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
96 2 0.02
97 7 0.06
98 110 0.91
99 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (97 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACTAAGTG
CAGGCTACTACGCGTACCGGATAATTGATCCA
Found at i:83888841 original size:51 final size:51
Alignment explanation
Indices: 83888681--83888838 Score: 253
Period size: 51 Copynumber: 3.1 Consensus size: 51
83888671 ACTTCTAATC
* * *
83888681 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
83888732 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* * *
83888783 AGTGATAAGTGATAAGTGGTAGCTTTACCTACAGTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
83888834 AGTGA
1 AGTGA
83888839 TAAATGTGAT
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 99 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:83896832 original size:12 final size:12
Alignment explanation
Indices: 83896815--83896842 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
83896805 ATTTGAAAAT
83896815 TTAATATTTTTA
1 TTAATATTTTTA
83896827 TTAATATTTTTA
1 TTAATATTTTTA
83896839 TTAA
1 TTAA
83896843 AAAAACGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTAATATTTTTA
Found at i:83898067 original size:162 final size:162
Alignment explanation
Indices: 83897790--83898167 Score: 571
Period size: 162 Copynumber: 2.3 Consensus size: 162
83897780 TTTGATACAG
* *** *
83897790 TGTCTATTGCTAATAGCCTTGGGAGATTACAAACTCCAAAGATATGGGACTGCTCCCAATTGAAA
1 TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACTATGAAGATATGAGACTGCTCCCAATTGAAA
83897855 GAAATAATCCAAGGCTCAGAAGTGTAAGACATAAACCTCCAAAGTTTAAGGGAAGTAAAAGTTAG
66 GAAATAATCCAAGGCTCAGAAGTGTAAGACATAAACCTCCAAAGTTTAAGGGAAGTAAAAGTTAG
83897920 AAACTACAATAATTTGAGGTATCTCTTCCCAA
131 AAACTACAATAATTTGAGGTATCTCTTCCCAA
*
83897952 TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACTTTGAAGATATGAGACTGCTCCCAATTGAAA
1 TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACTATGAAGATATGAGACTGCTCCCAATTGAAA
* * *
83898017 G-AATAATTCAAGGCTCAGAAGTGTCAA-ACATAAGCCTCCAAAGTTTTAAGGGAAGTAGAAGTT
66 GAAATAATCCAAGGCTCAGAAGTGT-AAGACATAAACCTCCAAAG-TTTAAGGGAAGTAAAAGTT
** *
83898080 AGAAACTGTAATAATTTGATGTATCTCTTCCCAA
129 AGAAACTACAATAATTTGAGGTATCTCTTCCCAA
* * * * *
83898114 TATCTATTGCTAATAGCCTTAGGAGATTGCAAACTATGCAGATAAGTGACTGCT
1 TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACTATGAAGATATGAGACTGCT
83898168 TCTGTCACGG
Statistics
Matches: 197, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
161 37 0.19
162 160 0.81
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (162 bp):
TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACTATGAAGATATGAGACTGCTCCCAATTGAAA
GAAATAATCCAAGGCTCAGAAGTGTAAGACATAAACCTCCAAAGTTTAAGGGAAGTAAAAGTTAG
AAACTACAATAATTTGAGGTATCTCTTCCCAA
Found at i:83898646 original size:51 final size:51
Alignment explanation
Indices: 83898529--83898664 Score: 148
Period size: 51 Copynumber: 2.7 Consensus size: 51
83898519 CTACCACCAA
* * *
83898529 ATCTCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAG
1 ATCTCTAAGACTATAATATCATATCTTATAAGATTACATATCATAGATAAG
* * * * * * **
83898580 ATATGTAA-TCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGAC-TATAATATCATATCTTATAAGATTACATATCATAGATAAG
*
83898631 ATCTCTAAGACTATAATATCATATCTTTTAAGAT
1 ATCTCTAAGACTATAATATCATATCTTATAAGAT
83898665 CATGTTTCCA
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
51 65 0.98
52 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGACTATAATATCATATCTTATAAGATTACATATCATAGATAAG
Found at i:83901119 original size:20 final size:20
Alignment explanation
Indices: 83901094--83901132 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
83901084 TCTTAAGAAC
83901094 TCCTCCAAGGCACCAACTCG
1 TCCTCCAAGGCACCAACTCG
83901114 TCCTCCAAGGCACCAACTC
1 TCCTCCAAGGCACCAACTC
83901133 AAAGTACAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.46, G:0.13, T:0.15
Consensus pattern (20 bp):
TCCTCCAAGGCACCAACTCG
Found at i:83901487 original size:51 final size:51
Alignment explanation
Indices: 83901370--83901505 Score: 148
Period size: 51 Copynumber: 2.7 Consensus size: 51
83901360 CTACCACCAA
* * *
83901370 ATCTCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAG
1 ATCTCTAAGACTATAATATCATATCTTATAAGATTACATATCATAGATAAG
* * * * * * **
83901421 ATATGTAA-TCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGAC-TATAATATCATATCTTATAAGATTACATATCATAGATAAG
*
83901472 ATCTCTAAGACTATAATATCATATCTTTTAAGAT
1 ATCTCTAAGACTATAATATCATATCTTATAAGAT
83901506 CATGTTTCCA
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
51 65 0.98
52 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGACTATAATATCATATCTTATAAGATTACATATCATAGATAAG
Found at i:83906096 original size:20 final size:20
Alignment explanation
Indices: 83906071--83906109 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
83906061 GATAATCATC
*
83906071 GTAGGTATCGATACTAATGA
1 GTAGGTATCGATACCAATGA
*
83906091 GTAGGTATTGATACCAATG
1 GTAGGTATCGATACCAATG
83906110 TAAAAATCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
GTAGGTATCGATACCAATGA
Found at i:83906487 original size:20 final size:20
Alignment explanation
Indices: 83906462--83906501 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
83906452 CGAGAATGAT
83906462 GATCATGCATCACCAAACTC
1 GATCATGCATCACCAAACTC
*
83906482 GATCATGCATCATCAAACTC
1 GATCATGCATCACCAAACTC
83906502 AATCTTTAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.33, G:0.10, T:0.23
Consensus pattern (20 bp):
GATCATGCATCACCAAACTC
Found at i:83911347 original size:15 final size:15
Alignment explanation
Indices: 83911327--83911356 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83911317 CATTTTATTT
*
83911327 ATATTAGGATAATTA
1 ATATTAAGATAATTA
83911342 ATATTAAGATAATTA
1 ATATTAAGATAATTA
83911357 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:83911384 original size:27 final size:26
Alignment explanation
Indices: 83911323--83911385 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
83911313 ACTCCATTTT
83911323 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
83911350 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
83911378 ATTTTATT
1 ATTTTATT
83911386 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:83912327 original size:12 final size:12
Alignment explanation
Indices: 83912310--83912342 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
83912300 CTACTTCCCC
83912310 TTTACTATTATA
1 TTTACTATTATA
*
83912322 TTTACTATTATT
1 TTTACTATTATA
83912334 TTTACTATT
1 TTTACTATT
83912343 TTACAGGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTACTATTATA
Found at i:83915153 original size:5 final size:5
Alignment explanation
Indices: 83915139--83915212 Score: 105
Period size: 5 Copynumber: 14.4 Consensus size: 5
83915129 GCAACCCAAT
83915139 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTA TTTTA TTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
*
83915189 TTTTA TTTTTC TTATTA TTTTA TT
1 TTTTA -TTTTA TT-TTA TTTTA TT
83915213 ATTTTCAGAT
Statistics
Matches: 63, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
4 4 0.06
5 46 0.73
6 13 0.21
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:83915183 original size:24 final size:24
Alignment explanation
Indices: 83915139--83915212 Score: 100
Period size: 24 Copynumber: 3.1 Consensus size: 24
83915129 GCAACCCAAT
83915139 TTTTATTTTTATTTTATTTTATTTTA
1 TTTTA-TTTTA-TTTATTTTATTTTA
83915165 TTTTATTTTATTTATTTTATTTTA
1 TTTTATTTTATTTATTTTATTTTA
83915189 TTTTATTTT-TCTTA--TTATTTTA
1 TTTTATTTTAT-TTATTTTATTTTA
83915211 TT
1 TT
83915213 ATTTTCAGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
22 10 0.21
23 1 0.02
24 26 0.55
25 5 0.11
26 5 0.11
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTATTTTATTTATTTTATTTTA
Found at i:83915218 original size:19 final size:19
Alignment explanation
Indices: 83915139--83915217 Score: 103
Period size: 19 Copynumber: 4.2 Consensus size: 19
83915129 GCAACCCAAT
83915139 TTTTATTTTTATTTTATTTTA
1 TTTTA-TTTTATTTTA-TTTA
83915160 TTTTATTTTATTTTATTTA
1 TTTTATTTTATTTTATTTA
83915179 TTTTATTTTATTTTATTT-
1 TTTTATTTTATTTTATTTA
83915197 TTCTTA--TTATTTTA-TTA
1 TT-TTATTTTATTTTATTTA
83915214 TTTT
1 TTTT
83915218 CAGATATTAA
Statistics
Matches: 56, Mismatches: 0, Indels: 9
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.07
17 10 0.18
18 2 0.04
19 25 0.45
20 10 0.18
21 5 0.09
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTATTTTATTTTATTTA
Found at i:83916103 original size:99 final size:101
Alignment explanation
Indices: 83915926--83916109 Score: 284
Period size: 99 Copynumber: 1.8 Consensus size: 101
83915916 TAATTTCTAA
*
83915926 GAATGTGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGGTTGTCATCTCTCTTCGCGTCAAAAGG
1 GAATGTGCTGGGCTGAGTAACCGGGGTGAGGTGCTTGGGTTGTCATCTCTCTTCGCGTCAAAAGG
* *
83915991 TTCGATATGTTCCT-AGGAATAATAAAAGAAATTAG
66 TACGATATATTCCTAAGGAATAATAAAAGAAATTAG
* * *
83916026 GAATGTGCTGGGTTGAGTAACTGGGGTGGGGTGCTT-GGTTGTCATCTCTCTTCGCGTCAAAAGG
1 GAATGTGCTGGGCTGAGTAACCGGGGTGAGGTGCTTGGGTTGTCATCTCTCTTCGCGTCAAAAGG
83916090 TAC-AGTATATTCCTAAGGAA
66 TACGA-TATATTCCTAAGGAA
83916110 AGTAAATAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
98 1 0.01
99 38 0.50
100 37 0.49
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.30
Consensus pattern (101 bp):
GAATGTGCTGGGCTGAGTAACCGGGGTGAGGTGCTTGGGTTGTCATCTCTCTTCGCGTCAAAAGG
TACGATATATTCCTAAGGAATAATAAAAGAAATTAG
Found at i:83916750 original size:15 final size:15
Alignment explanation
Indices: 83916730--83916759 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83916720 CATTTTATTT
*
83916730 ATATTAGGATAATTA
1 ATATTAAGATAATTA
83916745 ATATTAAGATAATTA
1 ATATTAAGATAATTA
83916760 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:83916787 original size:27 final size:26
Alignment explanation
Indices: 83916726--83916788 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
83916716 ACTCCATTTT
83916726 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
83916753 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
83916781 ATTTTATT
1 ATTTTATT
83916789 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:83917736 original size:12 final size:12
Alignment explanation
Indices: 83917715--83917748 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
83917705 CCTACTTCCC
83917715 CTTTACTATTAT
1 CTTTACTATTAT
*
83917727 CTTTAGTATTAT
1 CTTTACTATTAT
*
83917739 TTTTACTATT
1 CTTTACTATT
83917749 TTACAGGGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.12, G:0.03, T:0.62
Consensus pattern (12 bp):
CTTTACTATTAT
Found at i:83918939 original size:29 final size:30
Alignment explanation
Indices: 83918892--83918959 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
83918882 TGGCCCAAGA
* * *
83918892 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
83918922 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
83918952 GCAAATAT
1 GTAAATAT
83918960 TTTAAGGGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:83925487 original size:18 final size:18
Alignment explanation
Indices: 83925464--83925500 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
83925454 TATGTGTTAG
83925464 AGAACAACATACTGGACT
1 AGAACAACATACTGGACT
83925482 AGAACAACATACTGGACT
1 AGAACAACATACTGGACT
83925500 A
1 A
83925501 ACTTGCCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.22, G:0.16, T:0.16
Consensus pattern (18 bp):
AGAACAACATACTGGACT
Found at i:83927926 original size:5 final size:5
Alignment explanation
Indices: 83927916--83927986 Score: 54
Period size: 5 Copynumber: 14.2 Consensus size: 5
83927906 GTAGGATGTA
* * * * * *
83927916 ATATG ATATG ATATG TTATG CA-ATG CTTTG CTACG ATATG ACATG ATATG
1 ATATG ATATG ATATG ATATG -ATATG ATATG ATATG ATATG ATATG ATATG
**
83927966 ATGCG ATATG ATATG ATATG A
1 ATATG ATATG ATATG ATATG A
83927987 CCTAATATGG
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (5 bp):
ATATG
Found at i:83927972 original size:20 final size:20
Alignment explanation
Indices: 83927949--83927986 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
83927939 TGCTTTGCTA
83927949 CGATATGACATGATATGATG
1 CGATATGACATGATATGATG
*
83927969 CGATATGATATGATATGA
1 CGATATGACATGATATGA
83927987 CCTAATATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.32
Consensus pattern (20 bp):
CGATATGACATGATATGATG
Found at i:83931882 original size:50 final size:51
Alignment explanation
Indices: 83931822--83931943 Score: 138
Period size: 50 Copynumber: 2.4 Consensus size: 51
83931812 TTAGGTCATG
** * * *
83931822 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAGCTTAGATCACA
* * * * *
83931872 TGTGTAGTACTAAGTGTAAGCTACTATGCATACCCGATAGCTTTGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAGCTTAGATCACA
*
83931923 TGTGTGGTACTAAGTGCAGGC
1 TGTGTAGTACTAAGTGCAGGC
83931944 CAATATGTGT
Statistics
Matches: 58, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
50 32 0.55
51 26 0.45
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAGCTTAGATCACA
Done.