Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 28 of 335
Found at i:10285606 original size:57 final size:57
Alignment explanation
Indices: 10285479--10285606 Score: 166
Period size: 57 Copynumber: 2.2 Consensus size: 57
10285469 ATGTATTAGT
* ** * *
10285479 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTGGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
10285536 TGAGTTATGTAAGTGGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTGGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
10285593 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
10285607 AATGATCAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (57 bp):
TAAGTTATGTAAGTGGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:10286600 original size:373 final size:373
Alignment explanation
Indices: 10285915--10287996 Score: 4056
Period size: 373 Copynumber: 5.6 Consensus size: 373
10285905 CTACATGGTA
*
10285915 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
10285980 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
*
10286045 ACCCGTCAGGTTTCTAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
10286110 GGTCAGCTATTGTTGTACTTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
196 GGTCAGCTATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
*
10286175 AATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
261 AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
*
10286240 AATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
326 AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTAT
*
10286288 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTTAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
10286353 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
10286418 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
10286483 GGTCAGCTATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
196 GGTCAGCTATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
10286548 AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
261 AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
10286613 AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTAT
326 AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTAT
*
10286661 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTTAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
10286726 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
10286791 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
10286856 GGTCAGCTATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
196 GGTCAGCTATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
10286921 AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
261 AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
*
10286986 AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATCAAGGTTAT
326 AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTAT
10287034 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
10287099 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
10287164 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
10287229 GGTCAGCTATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
196 GGTCAGCTATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
10287294 AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
261 AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
10287359 AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTAT
326 AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTAT
10287407 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
*
10287472 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGACA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
10287537 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
10287602 GGTCAGCTATTGTTGTACTTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
196 GGTCAGCTATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
10287667 AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
261 AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
10287732 AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTAT
326 AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTAT
10287780 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
*
10287845 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGTAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
10287910 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
10287975 AGTCAGCTATTGTTGTAATTTT
196 GGTCAGCTATTGTTGTAATTTT
10287997 AATGGACAAG
Statistics
Matches: 1694, Mismatches: 15, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
373 1694 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (373 bp):
ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTA
AATATTAAAATAAAACATTATTAATTTAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAG
AATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTAT
Found at i:10290369 original size:20 final size:20
Alignment explanation
Indices: 10290344--10290383 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
10290334 GATCTTGCAG
*
10290344 GGGATCATATAAGCATCAAA
1 GGGATCACATAAGCATCAAA
10290364 GGGATCACATAAGCATCAAA
1 GGGATCACATAAGCATCAAA
10290384 TCAGCCATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.17
Consensus pattern (20 bp):
GGGATCACATAAGCATCAAA
Found at i:10292257 original size:15 final size:15
Alignment explanation
Indices: 10292239--10292270 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10292229 AAATAATAAT
*
10292239 TTATATATATTTATC
1 TTATATACATTTATC
10292254 TTATATACATTTATC
1 TTATATACATTTATC
10292269 TT
1 TT
10292271 CTACATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:10292267 original size:25 final size:24
Alignment explanation
Indices: 10292206--10292251 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
10292196 ACCACTTTTC
*
10292206 ATATATATATTTATATATTTTTAAA
1 ATATATA-ATTTATATATATTTAAA
10292231 ATA-ATAATTTATATATATTTA
1 ATATATAATTTATATATATTTA
10292252 TCTTATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 3 0.15
25 3 0.15
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATATAATTTATATATATTTAAA
Found at i:10292717 original size:20 final size:18
Alignment explanation
Indices: 10292691--10292741 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
10292681 TTACACCCTA
10292691 AATATATATTATAA-TCTT
1 AATATATATTATAAGT-TT
*
10292709 AATATATATTAGAAGTTT
1 AATATATATTATAAGTTT
10292727 AATATATATATATAA
1 AATATATAT-TATAA
10292742 CAAGGGACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (18 bp):
AATATATATTATAAGTTT
Found at i:10293124 original size:40 final size:40
Alignment explanation
Indices: 10293080--10293212 Score: 126
Period size: 40 Copynumber: 3.3 Consensus size: 40
10293070 CCTCGACCTA
* * * * *
10293080 TAGCGGCGTTTT-TCCTAAAGCGCCGCTGTTGTTCAGTTTT
1 TAGCGGCGTTTTGGCCAAAAACGCCGCTATTGCTCAG-TTT
10293120 TAGCGGCGTTTTGGCCAAAAACGCCGCTATTGCTCAGTTT
1 TAGCGGCGTTTTGGCCAAAAACGCCGCTATTGCTCAGTTT
** * * *
10293160 TAGCGGCG-TTTGGATAAAAAACGCCTCTATTACTCTGTTTT
1 TAGCGGCGTTTTGG-CCAAAAACGCCGCTATTGCTCAG-TTT
*
10293201 TAGCAGCGTTTT
1 TAGCGGCGTTTT
10293213 ATTGAAAACG
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 5 0.06
40 41 0.53
41 29 0.37
42 3 0.04
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (40 bp):
TAGCGGCGTTTTGGCCAAAAACGCCGCTATTGCTCAGTTT
Found at i:10300229 original size:15 final size:14
Alignment explanation
Indices: 10300206--10300253 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 14
10300196 AAAAAAAAAG
10300206 AAGAG-AAAAAGGA
1 AAGAGAAAAAAGGA
10300219 AAGAGAAAAAAGGA
1 AAGAGAAAAAAGGA
*
10300233 AA-AGGAAAAA-G-
1 AAGAGAAAAAAGGA
10300244 AAGAGAAAAA
1 AAGAGAAAAA
10300254 CAAAAAAGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 2 0.06
12 7 0.23
13 12 0.39
14 10 0.32
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (14 bp):
AAGAGAAAAAAGGA
Found at i:10300287 original size:24 final size:24
Alignment explanation
Indices: 10300233--10300287 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
10300223 GAAAAAAGGA
*
10300233 AAAGGA-A-AAAGAAGAGAAAAAC
1 AAAGGAGAGAAAGAAAAGAAAAAC
** *
10300255 AAAAAAGAGAAAGAAAAGAAAAGC
1 AAAGGAGAGAAAGAAAAGAAAAAC
10300279 AAAGGAGAG
1 AAAGGAGAG
10300288 GCCAAGGCGA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 4 0.16
23 1 0.04
24 20 0.80
ACGTcount: A:0.71, C:0.04, G:0.25, T:0.00
Consensus pattern (24 bp):
AAAGGAGAGAAAGAAAAGAAAAAC
Found at i:10301791 original size:135 final size:135
Alignment explanation
Indices: 10301534--10302555 Score: 1327
Period size: 135 Copynumber: 7.6 Consensus size: 135
10301524 GATTTCGGCA
* * *
10301534 AGCCTTATC-CCACTGAGTAGGAGTGGAGCAGGCT-AA-AT-ACTAGATCTTATCTTCGCTGAGC
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAAC-AGATCTTATCTTCACTGAGC
* *
10301595 AGGAACG-GAA-CAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGCAATGGAGTAGATTC
65 AGG-A-GTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTC
10301658 CAATCATC
128 CAATCATC
*
10301666 AGCCTTATCTTTACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
* * *
10301731 GGAGTGAAGCAGATCAAATTTTGAAGAATCTTATCTCCACGTATCGGCAATTGAGCAGATTCCAA
66 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAA
10301796 TCATC
131 TCATC
* *
10301801 AGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
** * * * *
10301866 GGAGTGAAGCAGATCAAATTTTGGCGAATCTTACCTCCATGTATCGACAATGGAGCAGATTTCAG
66 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAA
*
10301931 CCATC
131 TCATC
** * *
10301936 AGCCTTATCTTCACTGAGCAAAAGTGGAGCAGGCT-AA-AT-ACTATATCTTATCTTCGCTGAGC
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAAC-AGATCTTATCTTCACTGAGC
* * * * * **
10301998 AGGAG-CAGAGCAGATCAATTTTTGATGAATATTATCTCTATGTATCGGCAATGGAGCAAATTTT
65 AGGAGTGA-AGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCC
** *
10302062 AGCCACC
129 AATCATC
* * *
10302069 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGACCTTATCTTCGCTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
* * * *
10302134 GGAGTGAAGCAGGTCAAACTTTGATGAATCTTATCTCCATGCATCGACAATGGAGCAGATTCCAA
66 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAA
10302199 TCATC
131 TCATC
* *
10302204 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCATTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
* * * *
10302269 GGAGTGAAGCAAATCAAATTTTGA-CAAGTCTTATCTCCATGTATCGGCAATGGAGTAGATTTCA
66 GGAGTGAAGCAGATCAAATTTTGATGAA-TCTTATCTCCATGTATCGGCAATGGAGCAGATTCCA
** *
10302333 GCCACC
130 ATCATC
* * * * *
10302339 AGCCTTATTTTCACTAAGCAGGAGTGGAGCAGGCT--ATAT-ACTAGACCTTATCTTCGCTGAGC
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAAC-AGATCTTATCTTCACTGAGC
*
10302401 AGGAGTGAAGCAGGTCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCA
65 AGGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCA
10302466 ATCATC
130 ATCATC
* * * * *
10302472 AACCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAACATACCAGATCTTTTCTTTACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
* *
10302537 GG-GTAAAACAGATCAAATT
66 GGAGTGAAGCAGATCAAATT
10302556 ACAGCAGATC
Statistics
Matches: 773, Mismatches: 99, Indels: 34
0.85 0.11 0.04
Matches are distributed among these distances:
132 12 0.02
133 245 0.32
134 28 0.04
135 483 0.62
136 5 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (135 bp):
AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAA
TCATC
Found at i:10302074 original size:268 final size:267
Alignment explanation
Indices: 10301534--10302555 Score: 1405
Period size: 268 Copynumber: 3.8 Consensus size: 267
10301524 GATTTCGGCA
* * * *
10301534 AGCCTTATC-CCACTGAGTAGGAGTGGAGCAGGCTAA-ATACTAGATCTTATCTTCGCTGAGCAG
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAACATACCAGACCTTATCTTCGCTGAGCAG
* * *
10301597 GAACG-GAA-CAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGCAATGGAGTAGATTCCA
66 G-A-GTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGACAATGGAGCAGATTCCA
*
10301660 ATCATCAGCCTTATCTTTACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCAC
129 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACAT-ACAGATCTTATCTTCAC
* *
10301725 TGAGCAGGAGTGAAGCAGATCAAATTTTGAAGAATCTTATCTCCACGTATCGGCAATTGAGCAGA
193 TGAGCAGGAGTGAAGCAGATCAAATTTTG-AGAATCTTATCTCCATGTATCGGCAATGGAGCAGA
* ** *
10301790 TTCCAATCATC
257 TTTCAGCCACC
* * *
10301801 AGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AACATACCAGACCTTATCTTCGCTGAGCA
** * * *
10301866 GGAGTGAAGCAGATCAAATTTTGGCGAATCTTACCTCCATGTATCGACAATGGAGCAGATTTCAG
65 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGACAATGGAGCAGATTCCAA
* ** * *
10301931 CCATCAGCCTTATCTTCACTGAGCAAAAGTGGAGCAGGCT-AA-ATACTATATCTTATCTTCGCT
130 TCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAC-AGATCTTATCTTCACT
* * * * *
10301994 GAGCAGGAG-CAGAGCAGATCAATTTTTGATGAATATTATCTCTATGTATCGGCAATGGAGCAAA
194 GAGCAGGAGTGA-AGCAGATCAAATTTTGA-GAATCTTATCTCCATGTATCGGCAATGGAGCAGA
*
10302058 TTTTAGCCACC
257 TTTCAGCCACC
10302069 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGACCTTATCTTCGCTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AACATACCAGACCTTATCTTCGCTGAGCA
* * *
10302134 GGAGTGAAGCAGGTCAAACTTTGATGAATCTTATCTCCATGCATCGACAATGGAGCAGATTCCAA
65 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGACAATGGAGCAGATTCCAA
*
10302199 TCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCATT
130 TCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATA-CAGATCTTATCTTCACT
* * *
10302264 GAGCAGGAGTGAAGCAAATCAAATTTTGACAAGTCTTATCTCCATGTATCGGCAATGGAGTAGAT
194 GAGCAGGAGTGAAGCAGATCAAATTTTGAGAA-TCTTATCTCCATGTATCGGCAATGGAGCAGAT
10302329 TTCAGCCACC
258 TTCAGCCACC
* * * *
10302339 AGCCTTATTTTCACTAAGCAGGAGTGGAGCAGGCT-ATATACTAGACCTTATCTTCGCTGAGCAG
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAACATACCAGACCTTATCTTCGCTGAGCAG
* *
10302403 GAGTGAAGCAGGTCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAAT
66 GAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGACAATGGAGCAGATTCCAAT
* * * *
10302468 CATCAACCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAACATACCAGATCTTTTCTTTACTG
131 CATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATA-CAGATCTTATCTTCACTG
* *
10302533 AGCAGG-GTAAAACAGATCAAATT
195 AGCAGGAGTGAAGCAGATCAAATT
10302556 ACAGCAGATC
Statistics
Matches: 674, Mismatches: 68, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
267 27 0.04
268 411 0.61
269 12 0.02
270 222 0.33
271 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (267 bp):
AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAACATACCAGACCTTATCTTCGCTGAGCAG
GAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGACAATGGAGCAGATTCCAAT
CATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACAGATCTTATCTTCACTGA
GCAGGAGTGAAGCAGATCAAATTTTGAGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTC
AGCCACC
Found at i:10302131 original size:45 final size:45
Alignment explanation
Indices: 10302066--10302279 Score: 165
Period size: 45 Copynumber: 4.8 Consensus size: 45
10302056 AATTTTAGCC
10302066 ACCAG-CCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACAT
1 ACCAGACCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACAT
* *
10302110 ACCAGACCTTATCTTCGCTGAGCAGGAGTGAAGCAGG-TCAAAC-T
1 ACCAGACCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAACAT
*** * * * * * * * *
10302154 TTGATGAATCTTATCTCCA-TGCATC-GACAATGGAGCAGATTCCAATCAT
1 ACCA-G-ACCTTATCTTCACTG-AGCAG-GAGTGGAGCAG--GCTAAACAT
10302203 --CAG-CCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACAT
1 ACCAGACCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACAT
* * *
10302245 ACCAGATCTTATCTTCATTGAGCAGGAGTGAAGCA
1 ACCAGACCTTATCTTCACTGAGCAGGAGTGGAGCA
10302280 AATCAAATTT
Statistics
Matches: 128, Mismatches: 27, Indels: 29
0.70 0.15 0.16
Matches are distributed among these distances:
42 6 0.05
44 31 0.24
45 66 0.52
46 20 0.16
47 1 0.01
48 3 0.02
49 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (45 bp):
ACCAGACCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACAT
Found at i:10302291 original size:403 final size:403
Alignment explanation
Indices: 10301555--10302553 Score: 1527
Period size: 403 Copynumber: 2.5 Consensus size: 403
10301545 ACTGAGTAGG
* * * *
10301555 AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAACGGAACAGATCAAATTTTGG
1 AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAGCAGAGCAGATCAAATTTTGA
* *
10301620 TGAATCTTATCTCCATGTATCGGCAATGGAGTAGATTCCAATCATCAGCCTTATCTTTACTGAGC
66 TGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAGC
* *
10301685 AGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAAT
131 AGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAAC
* * *
10301750 TTTGAAGAATCTTATCTCCACGTATCGGCAATTGAGCAGATTCCAATCATCAGCCTTATCTTCAC
196 TTTGAAGAATCTTATCTCCACGCATCGACAATGGAGCAGATTCCAATCATCAGCCTTATCTTCAC
* *
10301815 TGAGTAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGAT
261 TGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGGAGTGAAGCAAAT
* *
10301880 CAAATTTTGGCGAA-TCTTACCTCCATGTATCGACAATGGAGCAGATTTCAGCCATCAGCCTTAT
326 CAAATTTTGAC-AAGTCTTACCTCCATGTATCGACAATGGAGCAGATTTCAGCCACCAGCCTTAT
*
10301944 CTTCACTGAGCAAA
390 CTTCACTAAGCAAA
* *
10301958 AGTGGAGCAGGCTAAATACTATATCTTATCTTCGCTGAGCAGGAGCAGAGCAGATCAATTTTTGA
1 AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAGCAGAGCAGATCAAATTTTGA
* * * ** ** *
10302023 TGAATATTATCTCTATGTATCGGCAATGGAGCAAATTTTAGCCACCAGCCTTATCTTCACTGAGC
66 TGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAGC
* * *
10302088 AGGAGTGGAGCAGGCTAAACATACCAGACCTTATCTTCGCTGAGCAGGAGTGAAGCAGGTCAAAC
131 AGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAAC
* *
10302153 TTTGATGAATCTTATCTCCATGCATCGACAATGGAGCAGATTCCAATCATCAGCCTTATCTTCAC
196 TTTGAAGAATCTTATCTCCACGCATCGACAATGGAGCAGATTCCAATCATCAGCCTTATCTTCAC
*
10302218 TGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCATTGAGCAGGAGTGAAGCAAAT
261 TGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGGAGTGAAGCAAAT
* * * *
10302283 CAAATTTTGACAAGTCTTATCTCCATGTATCGGCAATGGAGTAGATTTCAGCCACCAGCCTTATT
326 CAAATTTTGACAAGTCTTACCTCCATGTATCGACAATGGAGCAGATTTCAGCCACCAGCCTTATC
**
10302348 TTCACTAAGCAGG
391 TTCACTAAGCAAA
* * * *
10302361 AGTGGAGCAGGCTATATACTAGACCTTATCTTCGCTGAGCAGGAG-TGAAGCAGGTCAAATTTTG
1 AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAGCAG-AGCAGATCAAATTTTG
*
10302425 ATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATCAACCTTATCTTCACTGAG
65 ATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAG
* * * * *
10302490 TAGGAGTGGAGCAGGCTAAACATACCAGATCTTTTCTTTACTGAGCAGG-GTAAAACAGATCAAA
130 CAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAA
10302554 TTACAGCAGA
Statistics
Matches: 533, Mismatches: 61, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
402 15 0.03
403 518 0.97
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (403 bp):
AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAGCAGAGCAGATCAAATTTTGA
TGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAGC
AGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAAC
TTTGAAGAATCTTATCTCCACGCATCGACAATGGAGCAGATTCCAATCATCAGCCTTATCTTCAC
TGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCAGGAGTGAAGCAAAT
CAAATTTTGACAAGTCTTACCTCCATGTATCGACAATGGAGCAGATTTCAGCCACCAGCCTTATC
TTCACTAAGCAAA
Found at i:10302806 original size:29 final size:29
Alignment explanation
Indices: 10302768--10302827 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
10302758 CCAAATTAAA
10302768 CACCCCACTAAACCGAT-CACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
10302797 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
10302826 CA
1 CA
10302828 TCTCCACACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.33, C:0.47, G:0.02, T:0.18
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:10302844 original size:37 final size:38
Alignment explanation
Indices: 10302791--10302864 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 38
10302781 CGATCACTAA
10302791 CTCCATCACCCTACTAAACCATCCACTACCTCCATCAT
1 CTCCATCACCCTACTAAACCATCCACTACCTCCATCAT
*
10302829 CTCCA-CACCCTACTAAACCGTCCACTACCTCCATCA
1 CTCCATCACCCTACTAAACCATCCACTACCTCCATCA
10302865 CCCCCACTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 30 0.86
38 5 0.14
ACGTcount: A:0.28, C:0.49, G:0.01, T:0.22
Consensus pattern (38 bp):
CTCCATCACCCTACTAAACCATCCACTACCTCCATCAT
Found at i:10302873 original size:18 final size:18
Alignment explanation
Indices: 10302850--10302885 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
10302840 ACTAAACCGT
10302850 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
10302868 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
10302886 TACTTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.61, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:10302986 original size:12 final size:12
Alignment explanation
Indices: 10302944--10302993 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
10302934 ATTGTATGGG
*
10302944 GAGGATTTTGGA
1 GAGGATTTTTGA
10302956 GAGGA-TTTTGA
1 GAGGATTTTTGA
10302967 GAGGATTTTTG-
1 GAGGATTTTTGA
*
10302978 GAGGAATTTTTTA
1 GAGG-ATTTTTGA
10302991 GAG
1 GAG
10302994 AATACACGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
11 14 0.42
12 16 0.48
13 3 0.09
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (12 bp):
GAGGATTTTTGA
Found at i:10302993 original size:24 final size:23
Alignment explanation
Indices: 10302944--10302987 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
10302934 ATTGTATGGG
*
10302944 GAGGATTTTGGAGAGGATTTTGA
1 GAGGATTTTGGAGAGAATTTTGA
10302967 GAGGATTTTTGGAG-GAATTTT
1 GAGGA-TTTTGGAGAGAATTTT
10302988 TTAGAGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (23 bp):
GAGGATTTTGGAGAGAATTTTGA
Found at i:10303276 original size:20 final size:21
Alignment explanation
Indices: 10303243--10303281 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
10303233 CTTTATTCTC
*
10303243 ATTATTTTTATATTTATTTTT
1 ATTATTTTTATATTAATTTTT
*
10303264 ATTA-TTTTCTATTAATTT
1 ATTATTTTTATATTAATTT
10303282 AATTAATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (21 bp):
ATTATTTTTATATTAATTTTT
Found at i:10303293 original size:61 final size:63
Alignment explanation
Indices: 10303214--10303331 Score: 156
Period size: 61 Copynumber: 1.9 Consensus size: 63
10303204 TGCTTTACTG
10303214 TTAAATTAATTAATTTGAGCTTTAT-TCTCATTATT-TT-TA-TATTTATTT-TTATTATTTTCT
1 TTAAATTAATTAATTTGAG--TTATGTCTCA-TATTATTATATTATTTATTTATTATTATTTTCT
10303274 A
63 A
* *
10303275 TTAATTTAATTAATTTGAGTTATGTTTCATATTATTATATTATTTATTTATTATTAT
1 TTAAATTAATTAATTTGAGTTATGTCTCATATTATTATATTATTTATTTATTATTAT
10303332 ATGTTTATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
59 8 0.16
60 6 0.12
61 20 0.40
62 9 0.18
63 7 0.14
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (63 bp):
TTAAATTAATTAATTTGAGTTATGTCTCATATTATTATATTATTTATTTATTATTATTTTCTA
Found at i:10303572 original size:21 final size:21
Alignment explanation
Indices: 10303548--10303589 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10303538 CTATATTTAA
*
10303548 TGTTATCGTCAACATATTTTT
1 TGTTATCATCAACATATTTTT
* *
10303569 TGTTATTATCATCATATTTTT
1 TGTTATCATCAACATATTTTT
10303590 AATATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.07, T:0.57
Consensus pattern (21 bp):
TGTTATCATCAACATATTTTT
Found at i:10304033 original size:126 final size:126
Alignment explanation
Indices: 10303803--10304046 Score: 443
Period size: 126 Copynumber: 1.9 Consensus size: 126
10303793 CATTGATCTT
* * *
10303803 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCTTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCAGTATTTAAAGAATTCGAAGAATCGTGCCCTA
*
10303868 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGATTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
10303929 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCAGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCAGTATTTAAAGAATTCGAAGAATCGTGCCCTA
*
10303994 ACGTACTGGATTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACGTACTGGATTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
10304047 AGGCAAAAAC
Statistics
Matches: 113, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 113 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (126 bp):
CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCAGTATTTAAAGAATTCGAAGAATCGTGCCCTA
ACGTACTGGATTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:10304883 original size:42 final size:42
Alignment explanation
Indices: 10304785--10304946 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 42
10304775 AGCTCGTACA
* * * *
10304785 ATGCCAATGTCTCAGATGTGGTCTTACA-TATAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA-AATCAAATA-CG
*
10304828 ATGCC-ACTGTCCCAGACG-GGTTTTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGACGTGG-TCTTACACGAAATCAAATACG
* *
10304870 ATGCCAACGTCCCAAACGTGGTCTTACGCGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCA-AA-TACG
*
10304914 ATGCCAACGTCCCAGATGTGGTCTTACACGAAA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAA
10304947 ACACATATCG
Statistics
Matches: 100, Mismatches: 11, Indels: 16
0.79 0.09 0.13
Matches are distributed among these distances:
42 26 0.26
43 41 0.41
44 32 0.32
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:10305377 original size:17 final size:18
Alignment explanation
Indices: 10305355--10305393 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
10305345 TTTAGTTTTT
*
10305355 AATTCACAAAAT-CACGA
1 AATTCACAAAATACACAA
10305372 AATTCACAAAATACACAA
1 AATTCACAAAATACACAA
10305390 AATT
1 AATT
10305394 TCTTTGTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21
Consensus pattern (18 bp):
AATTCACAAAATACACAA
Found at i:10305383 original size:9 final size:9
Alignment explanation
Indices: 10305355--10305393 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
10305345 TTTAGTTTTT
10305355 AATTCACAA
1 AATTCACAA
*
10305364 AA-TCACGA
1 AATTCACAA
10305372 AATTCACAA
1 AATTCACAA
*
10305381 AATACACAA
1 AATTCACAA
10305390 AATT
1 AATT
10305394 TCTTTGTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21
Consensus pattern (9 bp):
AATTCACAA
Found at i:10316358 original size:23 final size:22
Alignment explanation
Indices: 10316324--10316376 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
10316314 AAAAAATAGA
* *
10316324 TAAAATTATTATTTAACCAACTT
1 TAAAATTTTTA-TTAACCAAATT
* *
10316347 TAATATTTTTATTAATCAAATT
1 TAAAATTTTTATTAACCAAATT
10316369 TAAAATTT
1 TAAAATTT
10316377 AAACTTTAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (22 bp):
TAAAATTTTTATTAACCAAATT
Found at i:10316854 original size:12 final size:12
Alignment explanation
Indices: 10316833--10316863 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
10316823 AGTAAAAAAA
10316833 CGGTGCGCCCAC
1 CGGTGCGCCCAC
*
10316845 CGGTGTGCCCAC
1 CGGTGCGCCCAC
10316857 CGGTGCG
1 CGGTGCG
10316864 GTACTGACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.06, C:0.42, G:0.39, T:0.13
Consensus pattern (12 bp):
CGGTGCGCCCAC
Found at i:10317884 original size:4 final size:4
Alignment explanation
Indices: 10317871--10317900 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
10317861 TTGTTATTTG
10317871 CATT -ATT CATT CATT CATT CATT CATT CAT
1 CATT CATT CATT CATT CATT CATT CATT CAT
10317901 ATGGTATTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (4 bp):
CATT
Found at i:10318815 original size:12 final size:12
Alignment explanation
Indices: 10318798--10318823 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10318788 AGACTCCTGG
10318798 TTTTTTGTTTTT
1 TTTTTTGTTTTT
10318810 TTTTTTGTTTTT
1 TTTTTTGTTTTT
10318822 TT
1 TT
10318824 AAGAAAACGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:10321125 original size:21 final size:21
Alignment explanation
Indices: 10321099--10321140 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
10321089 ACTTTACTTA
10321099 TGGGTAATATGATTGTAACTC
1 TGGGTAATATGATTGTAACTC
10321120 TGGGTAATATGATTGTAACTC
1 TGGGTAATATGATTGTAACTC
10321141 AAGTTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.38
Consensus pattern (21 bp):
TGGGTAATATGATTGTAACTC
Found at i:10321247 original size:55 final size:57
Alignment explanation
Indices: 10321120--10321265 Score: 260
Period size: 55 Copynumber: 2.6 Consensus size: 57
10321110 ATTGTAACTC
10321120 TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
1 TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
* *
10321177 TGGGTAATATGATTGTAACTCACGTTGGAATGTTATCC-TCT-TAGAACTTTATTTA
1 TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
10321232 TGGGTAATATGATTGTAACTCAAGTTGGAATGTT
1 TGGGTAATATGATTGTAACTCAAGTTGGAATGTT
10321266 GTCAGCCAGT
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
55 46 0.53
56 3 0.03
57 37 0.43
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (57 bp):
TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
Found at i:10326424 original size:29 final size:29
Alignment explanation
Indices: 10326392--10326451 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
10326382 GGTTTGGTGG
*
10326392 TGGGTATATTTTTATTTTAATCATTTTCA
1 TGGGTACATTTTTATTTTAATCATTTTCA
10326421 TGGGTACATTTTTATTTTAATCATTTTCA
1 TGGGTACATTTTTATTTTAATCATTTTCA
10326450 TG
1 TG
10326452 CCCTTTCTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.08, G:0.12, T:0.57
Consensus pattern (29 bp):
TGGGTACATTTTTATTTTAATCATTTTCA
Found at i:10347331 original size:17 final size:17
Alignment explanation
Indices: 10347291--10347332 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
10347281 CATACGATGA
*
10347291 TTGTTTTTTTCTATTTT
1 TTGTTTATTTCTATTTT
10347308 TTG-TTATTTCTATTTT
1 TTGTTTATTTCTATTTT
10347324 TTGTTTATT
1 TTGTTTATT
10347333 GTATCTTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.10, C:0.05, G:0.07, T:0.79
Consensus pattern (17 bp):
TTGTTTATTTCTATTTT
Found at i:10356844 original size:15 final size:16
Alignment explanation
Indices: 10356800--10356849 Score: 57
Period size: 18 Copynumber: 3.0 Consensus size: 16
10356790 ATATATCAAA
*
10356800 TTTTAATTTTAATTTAAT
1 TTTTAA-TTAAATTT-AT
10356818 TTTTACATTAAATTTAT
1 TTTTA-ATTAAATTTAT
10356835 TTTT-ATTAAATTTAT
1 TTTTAATTAAATTTAT
10356850 ATGGCACAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 11 0.37
17 6 0.20
18 12 0.40
19 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTAATTAAATTTAT
Found at i:10357465 original size:32 final size:32
Alignment explanation
Indices: 10357403--10357465 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
10357393 TGTAGAATTT
* * *
10357403 TTTGAAATTTGTATTTAAACACTTTCAAAATG
1 TTTGAAATTTCTATTTAAAAACTTTAAAAATG
*
10357435 TTTGAAATTTCTCA-TTAAAAATTTTAAAAAT
1 TTTGAAATTTCT-ATTTAAAAACTTTAAAAAT
10357466 TTTAGCTAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.44
Consensus pattern (32 bp):
TTTGAAATTTCTATTTAAAAACTTTAAAAATG
Found at i:10359357 original size:13 final size:13
Alignment explanation
Indices: 10359325--10359357 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
10359315 TACTAAGTAA
10359325 AAAACTTAAATATT
1 AAAA-TTAAATATT
10359339 -AAATTAAATATT
1 AAAATTAAATATT
10359351 AAAATTA
1 AAAATTA
10359358 TTATTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATTAAATATT
Found at i:10359890 original size:19 final size:21
Alignment explanation
Indices: 10359860--10359899 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
10359850 TTTTGCTATG
10359860 TTTAATATTATGTTAT-TTTT
1 TTTAATATTATGTTATATTTT
10359880 TTTAA-ATTATGTTATATTTT
1 TTTAATATTATGTTATATTTT
10359900 AACTCTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTAATATTATGTTATATTTT
Found at i:10363844 original size:16 final size:17
Alignment explanation
Indices: 10363813--10363845 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10363803 TTCATAAGTA
10363813 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
10363830 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
10363846 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:10364298 original size:92 final size:92
Alignment explanation
Indices: 10364141--10364431 Score: 465
Period size: 92 Copynumber: 3.2 Consensus size: 92
10364131 TGCCATAGCG
* * *
10364141 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATAGTCTTA
1 TCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
*
10364206 TTCATTTCATGTCACGCTGTCATGGTA
66 TTCATTTCATGTCACGCTGCCATGGTA
* * **
10364233 TCTTTCAACTATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTATCTTTTAATAATGGTCTTA
1 TCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
10364298 TTCATTTCATGTCACGCTGCCATGGTA
66 TTCATTTCATGTCACGCTGCCATGGTA
* *
10364325 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
* * *
10364390 TTCATTTCATATCATGTTGCCATGGTA
66 TTCATTTCATGTCACGCTGCCATGGTA
10364417 TCTTTCAACCATGGT
1 TCTTTCAACCATGGT
10364432 ATTACACATT
Statistics
Matches: 184, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 184 1.00
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (92 bp):
TCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
TTCATTTCATGTCACGCTGCCATGGTA
Found at i:10364449 original size:46 final size:46
Alignment explanation
Indices: 10364141--10364445 Score: 416
Period size: 46 Copynumber: 6.6 Consensus size: 46
10364131 TGCCATAGCG
* *
10364141 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCA-TTTCATGTCATGTTGCCATGGTA
* * * *
10364187 TCTTTCAACCATAGTCTTATTCATTTCATGTCACGCTGTCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATGGTA
*
10364233 TCTTTCAACTATGGTCTTATTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCA-TTTCATGTCATGTTGCCATGGTA
* ** * *
10364279 TCTTTTAATAATGGTCTTATTCATTTCATGTCACGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATGGTA
**
10364325 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATGGTA
*
10364371 TCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATGGTA
* **
10364417 TCTTTCAACCATGGTATTACACATTTCAT
1 TCTTTCAACCATGGTCTTATTCATTTCAT
10364446 ATCAGAGAGC
Statistics
Matches: 227, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
45 8 0.04
46 215 0.95
47 4 0.02
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATGGTA
Found at i:10365746 original size:46 final size:44
Alignment explanation
Indices: 10365687--10365801 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
10365677 GACAGGACAA
* *
10365687 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
10365733 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
10365777 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
10365802 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:10365782 original size:44 final size:45
Alignment explanation
Indices: 10365687--10365820 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
10365677 GACAGGACAA
* *
10365687 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
10365733 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
10365777 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
10365821 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:10373109 original size:44 final size:45
Alignment explanation
Indices: 10373026--10373148 Score: 149
Period size: 44 Copynumber: 2.7 Consensus size: 45
10373016 CAGAAATGAG
* * *
10373026 CCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTGAT
1 CCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATAAT
*
10373072 CCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATAAT
1 CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAT
* * * *
10373116 TCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 CCATGTAAGTCCATATTAAA-ATATGGCATTGG
10373149 CAGGATATTG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 37 0.56
45 1 0.02
46 28 0.42
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (45 bp):
CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAT
Found at i:10377665 original size:68 final size:67
Alignment explanation
Indices: 10377593--10377742 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
10377583 CATCATGTGT
* * * *
10377593 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
10377655 ATGTAG
62 ATGTAG
** * *
10377661 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
10377726 AG
66 AG
10377728 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
10377743 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:10377698 original size:64 final size:64
Alignment explanation
Indices: 10377617--10377800 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
10377607 AGACATTATG
* *
10377617 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
10377681 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
10377746 AA
63 AA
* * * *
10377748 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
10377801 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:10378891 original size:2 final size:2
Alignment explanation
Indices: 10378884--10378908 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10378874 ATATGACATG
10378884 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10378909 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10388071 original size:6 final size:6
Alignment explanation
Indices: 10388060--10388086 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10388050 TGGATTATTT
10388060 AAATTA AAATTA AAATTA AAATTA AAA
1 AAATTA AAATTA AAATTA AAATTA AAA
10388087 CAAATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATTA
Found at i:10403012 original size:53 final size:53
Alignment explanation
Indices: 10402871--10403021 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
10402861 ACAAGTGTGC
* **
10402871 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
10402924 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
10402977 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
10403022 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:10410528 original size:53 final size:53
Alignment explanation
Indices: 10410387--10410537 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
10410377 ACAAGTGTGC
* **
10410387 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
10410440 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
10410493 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
10410538 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:10415437 original size:18 final size:18
Alignment explanation
Indices: 10415414--10415449 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
10415404 CTCTTCACTA
*
10415414 AAAATAAGAGAGACATTT
1 AAAATAAGAAAGACATTT
10415432 AAAATAAGAAAGACATTT
1 AAAATAAGAAAGACATTT
10415450 TTTTGAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.14, T:0.22
Consensus pattern (18 bp):
AAAATAAGAAAGACATTT
Found at i:10415812 original size:11 final size:11
Alignment explanation
Indices: 10415798--10415822 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10415788 AAAGGGAAGG
10415798 AAAAGAAAAGA
1 AAAAGAAAAGA
10415809 AAAAGAAAAGA
1 AAAAGAAAAGA
10415820 AAA
1 AAA
10415823 CAGGATACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAGA
Found at i:10423782 original size:15 final size:15
Alignment explanation
Indices: 10423762--10423792 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10423752 ACTACAATGC
10423762 ACCATTCAAATGAAG
1 ACCATTCAAATGAAG
10423777 ACCATTCAAATGAAG
1 ACCATTCAAATGAAG
10423792 A
1 A
10423793 GAGTACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.13, T:0.19
Consensus pattern (15 bp):
ACCATTCAAATGAAG
Found at i:10427440 original size:16 final size:16
Alignment explanation
Indices: 10427421--10427454 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
10427411 TAGTAATACT
*
10427421 AATAATTTGACTAGAA
1 AATAATTTGACCAGAA
10427437 AATAATTTGACCAGAA
1 AATAATTTGACCAGAA
10427453 AA
1 AA
10427455 GGGAAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.26
Consensus pattern (16 bp):
AATAATTTGACCAGAA
Found at i:10430977 original size:17 final size:16
Alignment explanation
Indices: 10430949--10430980 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
10430939 TAAATTTTTT
10430949 AAAATAAAAAATATAA
1 AAAATAAAAAATATAA
10430965 AAAATAAACAAATATA
1 AAAATAAA-AAATATA
10430981 CAATAGTACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATAAAAAATATAA
Found at i:10431242 original size:14 final size:14
Alignment explanation
Indices: 10431212--10431242 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10431202 TAAGCACAAG
*
10431212 AAAGAGAAACAAAA
1 AAAGAGAAAAAAAA
10431226 AAAGAGAAAAAAAA
1 AAAGAGAAAAAAAA
10431240 AAA
1 AAA
10431243 AAAAGCTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.84, C:0.03, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAGAGAAAAAAAA
Found at i:10434393 original size:19 final size:19
Alignment explanation
Indices: 10434316--10434394 Score: 68
Period size: 19 Copynumber: 3.9 Consensus size: 19
10434306 TCTCTAACAA
* *
10434316 ATTTTAAAACTAAAAAATA
1 ATTTTAAAATTAAAAAATT
*
10434335 ATTATAATAATTAAAAAAAGTT
1 ATTTTAA-AATT-AAAAAA-TT
* **
10434357 TTTTTAAAAATTTTAAAATT
1 ATTTT-AAAATTAAAAAATT
10434377 ATTTTAAAATTAAAAAAT
1 ATTTTAAAATTAAAAAAT
10434395 AAAGCTAACA
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
19 17 0.37
20 9 0.20
21 10 0.22
22 8 0.17
23 2 0.04
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (19 bp):
ATTTTAAAATTAAAAAATT
Found at i:10437794 original size:79 final size:79
Alignment explanation
Indices: 10437694--10437926 Score: 349
Period size: 79 Copynumber: 2.9 Consensus size: 79
10437684 CCAATATTGA
* * * * ** * *
10437694 CCATAAATTCCCTCTAATAGTGGTTCTATTGTTGATATTGAGTTATTCTAGAACATCTTTTTTCC
1 CCAT-AATCCCCTCTATTAGTGGTTCTGTAGTTGATATCAAGTTATTGTAGAACATCTTTTTGCC
10437759 AAATATACTTATTCC
65 AAATATACTTATTCC
*
10437774 CCATAATCCCCTCTATTAGTGGTTCTGCAGTTGATATCAAGTTATTGTAGAACATCTTTTTGCCA
1 CCATAATCCCCTCTATTAGTGGTTCTGTAGTTGATATCAAGTTATTGTAGAACATCTTTTTGCCA
10437839 AATATACTTATTCC
66 AATATACTTATTCC
* *
10437853 CCATAATCCCCTCTATTAGTGGTTCTGTCGTTGATATCAAGTTATTGTAGAACATCTTTTTGGCA
1 CCATAATCCCCTCTATTAGTGGTTCTGTAGTTGATATCAAGTTATTGTAGAACATCTTTTTGCCA
*
10437918 AATTTACTT
66 AATATACTT
10437927 TCAGATATAA
Statistics
Matches: 140, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 136 0.97
80 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (79 bp):
CCATAATCCCCTCTATTAGTGGTTCTGTAGTTGATATCAAGTTATTGTAGAACATCTTTTTGCCA
AATATACTTATTCC
Found at i:10439053 original size:92 final size:91
Alignment explanation
Indices: 10438896--10439075 Score: 317
Period size: 92 Copynumber: 2.0 Consensus size: 91
10438886 TCCTCCAAAA
10438896 TTTTTTTCCCCTTTTAATAACATGGCTCTGTAAAAGAAGTACAAAATGGCTAGTTTGGTTGATCA
1 TTTTTTTCCCCTTTTAATAACATGGCTCTGTAAAAGAAGTACAAAATGGCTAGTTTGGTTGATCA
*
10438961 AAAAGTTTCCAACATGTTACAATATTT
66 AAAAGATTCCAACAT-TTACAATATTT
10438988 TTTTTTTCCCCCTTTTAATAACATGGCTCTGTAAAAG-AGTACAAAATGGCTAGTTTGGTTGATC
1 TTTTTTT-CCCCTTTTAATAACATGGCTCTGTAAAAGAAGTACAAAATGGCTAGTTTGGTTGATC
*
10439052 AAAAAGATTCCAACATTTTCAATA
65 AAAAAGATTCCAACATTTACAATA
10439076 GTTTATACTT
Statistics
Matches: 85, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
91 7 0.08
92 49 0.58
93 29 0.34
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (91 bp):
TTTTTTTCCCCTTTTAATAACATGGCTCTGTAAAAGAAGTACAAAATGGCTAGTTTGGTTGATCA
AAAAGATTCCAACATTTACAATATTT
Found at i:10459157 original size:24 final size:25
Alignment explanation
Indices: 10459110--10459157 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
10459100 GAAACTAAAA
* **
10459110 AATTTAATATAAATGATATTTTAAT
1 AATTTAAAATAAATGATAGATTAAT
10459135 AATTTAAAAT-AATGATAGATTAA
1 AATTTAAAATAAATGATAGATTAA
10459158 ATATTCAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (25 bp):
AATTTAAAATAAATGATAGATTAAT
Found at i:10459160 original size:25 final size:25
Alignment explanation
Indices: 10459105--10459160 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
10459095 GTTTAGAAAC
* * *
10459105 TAAAAAATTTAATATAAATGATATT
1 TAAATAATTTAAAATAAATGATAAT
*
10459130 TTAATAATTTAAAAT-AATGATAGAT
1 TAAATAATTTAAAATAAATGATA-AT
10459155 TAAATA
1 TAAATA
10459161 TTCAAGTACA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (25 bp):
TAAATAATTTAAAATAAATGATAAT
Found at i:10462507 original size:28 final size:29
Alignment explanation
Indices: 10462442--10462509 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
10462432 GTTATTAGCT
10462442 TTTAAGTACTAAAATAGATAAAGAAAAAGG
1 TTTAAGTACTAAAATAGATAAAGAAAAA-G
*
10462472 TTCAAGTACT-AAATATGATAAA-AAATAA-
1 TTTAAGTACTAAAATA-GATAAAGAAA-AAG
10462500 TTTAAGTACT
1 TTTAAGTACT
10462510 CAATTGAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 9 0.26
29 8 0.24
30 17 0.50
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (29 bp):
TTTAAGTACTAAAATAGATAAAGAAAAAG
Found at i:10466938 original size:27 final size:27
Alignment explanation
Indices: 10466908--10466967 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
10466898 CAACCTCTAC
10466908 GAAAACTCGTTGTATGGTTCACTAAGG
1 GAAAACTCGTTGTATGGTTCACTAAGG
10466935 GAAAACTCGTTGTATGGTTCACTAAGG
1 GAAAACTCGTTGTATGGTTCACTAAGG
*
10466962 AAAAAC
1 GAAAAC
10466968 ATCGGTTGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (27 bp):
GAAAACTCGTTGTATGGTTCACTAAGG
Found at i:10468691 original size:23 final size:25
Alignment explanation
Indices: 10468665--10468711 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
10468655 TATCATTCAT
*
10468665 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
10468688 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
10468712 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:10472051 original size:46 final size:46
Alignment explanation
Indices: 10471991--10472256 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
10471981 TTTGACGTGA
* * * * * *
10471991 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
10472037 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
10472083 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10472129 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10472175 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10472213 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
10472257 AGAGCACACT
Statistics
Matches: 198, Mismatches: 13, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
38 33 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 151 0.76
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:10472221 original size:38 final size:38
Alignment explanation
Indices: 10472170--10472245 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
10472160 CATTTCATAT
10472170 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
10472208 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
10472246 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:10477488 original size:53 final size:53
Alignment explanation
Indices: 10477356--10477506 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
10477346 ACAAGTGTGC
* **
10477356 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
10477409 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* * *
10477462 CCGTATAAGACCAT-GTCTAGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
10477507 ACCGTGTAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:10488001 original size:23 final size:23
Alignment explanation
Indices: 10487955--10488001 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
10487945 AAGTGACTAC
*
10487955 ATTTTATTATTTTAAATATTATA
1 ATTTTATTATTTTAAATATAATA
*
10487978 ATTTTACTTATTTTAATTA-AATA
1 ATTTTA-TTATTTTAAATATAATA
10488001 A
1 A
10488002 AATAATTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
ATTTTATTATTTTAAATATAATA
Found at i:10489815 original size:6 final size:7
Alignment explanation
Indices: 10489800--10489825 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10489790 GATTGAGGAT
10489800 AAAATAA
1 AAAATAA
10489807 AAAATAA
1 AAAATAA
10489814 AAAATAA
1 AAAATAA
10489821 AAAAT
1 AAAAT
10489826 TAGCGCAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:10492084 original size:11 final size:12
Alignment explanation
Indices: 10492036--10492077 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
10492026 ATTCTGTGAT
*
10492036 AAAAAAAGAAGA
1 AAAAAAACAAGA
10492048 AAAAGAAA-AAGA
1 AAAA-AAACAAGA
10492060 AAAAAAACAAGA
1 AAAAAAACAAGA
10492072 AAAAAA
1 AAAAAA
10492078 TCAGAAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.11
12 22 0.79
13 3 0.11
ACGTcount: A:0.86, C:0.02, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAAACAAGA
Found at i:10496657 original size:32 final size:32
Alignment explanation
Indices: 10496621--10496683 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
10496611 CTAAATAGTA
*
10496621 TGTGATGAAATACA-TTTTATGGATTGCTTGTC
1 TGTGATAAAATA-AGTTTTATGGATTGCTTGTC
*
10496653 TGTGATAAAATAAGTTTTATGGGTTGCTTGT
1 TGTGATAAAATAAGTTTTATGGATTGCTTGT
10496684 TATGTTCTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.25, C:0.06, G:0.24, T:0.44
Consensus pattern (32 bp):
TGTGATAAAATAAGTTTTATGGATTGCTTGTC
Found at i:10496763 original size:96 final size:97
Alignment explanation
Indices: 10496593--10496788 Score: 349
Period size: 96 Copynumber: 2.0 Consensus size: 97
10496583 GGTGGATTGC
10496593 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACATTTTATGGATTGCTTGTCTGTGA
1 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACATTTTATGGATTGCTTGTCTGTGA
* *
10496658 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
66 TAAAATAAGTTTTATGAGTTGCTTCTTATGTT
*
10496690 CTGCTTACATCTCTTAAGCT-AATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTGTGA
1 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACATTTTATGGATTGCTTGTCTGTGA
*
10496754 TAAAGTAAGTTTTATGAGTTGCTTCTTATGTT
66 TAAAATAAGTTTTATGAGTTGCTTCTTATGTT
10496786 CTG
1 CTG
10496789 TTTATGGATA
Statistics
Matches: 95, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
96 75 0.79
97 20 0.21
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (97 bp):
CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACATTTTATGGATTGCTTGTCTGTGA
TAAAATAAGTTTTATGAGTTGCTTCTTATGTT
Found at i:10496766 original size:32 final size:32
Alignment explanation
Indices: 10496717--10496777 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
10496707 GCTAATAGTA
*
10496717 TGTGATGAAATACGTTTTATG-GATTGCTTGTC
1 TGTGATGAAATAAGTTTTATGAG-TTGCTTGTC
10496749 TGTGAT-AAAGTAAGTTTTATGAGTTGCTT
1 TGTGATGAAA-TAAGTTTTATGAGTTGCTT
10496778 CTTATGTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 3 0.12
32 22 0.85
33 1 0.04
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.44
Consensus pattern (32 bp):
TGTGATGAAATAAGTTTTATGAGTTGCTTGTC
Found at i:10498040 original size:45 final size:46
Alignment explanation
Indices: 10497989--10498082 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
10497979 TTAATGTTTG
10497989 AATAAAA-TTTCTTTTGATTACAATATTTTGTAAATTTGCAATAAC
1 AATAAAATTTTCTTTTGATTACAATATTTTGTAAATTTGCAATAAC
*
10498034 AATAAAATTTTCTTTTGTTTACAATATTTTGTAAATTTGCAATAAC
1 AATAAAATTTTCTTTTGATTACAATATTTTGTAAATTTGCAATAAC
10498080 AAT
1 AAT
10498083 GTCGATAATG
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 7 0.15
46 40 0.85
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (46 bp):
AATAAAATTTTCTTTTGATTACAATATTTTGTAAATTTGCAATAAC
Found at i:10507729 original size:2 final size:2
Alignment explanation
Indices: 10507722--10507766 Score: 81
Period size: 2 Copynumber: 22.0 Consensus size: 2
10507712 ATCAAATTAA
10507722 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT
10507765 AT
1 AT
10507767 TCTTTTACTT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 40 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10508017 original size:2 final size:2
Alignment explanation
Indices: 10508005--10508039 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
10507995 TCAAGCTTTC
10508005 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10508040 GAATCATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10509290 original size:16 final size:16
Alignment explanation
Indices: 10509236--10509295 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
10509226 TTTTGCCTAT
10509236 GTTTTTTAGGGTTAG-
1 GTTTTTTAGGGTTAGA
* *
10509251 GATTTTTAAGGTTTA-A
1 G-TTTTTTAGGGTTAGA
*
10509267 -TTGATTTAGGGTTAGA
1 GTT-TTTTAGGGTTAGA
10509283 GTTTTTTAGGGTT
1 GTTTTTTAGGGTT
10509296 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 9
0.69 0.12 0.18
Matches are distributed among these distances:
14 2 0.06
15 9 0.26
16 21 0.62
17 2 0.06
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (16 bp):
GTTTTTTAGGGTTAGA
Found at i:10509435 original size:20 final size:19
Alignment explanation
Indices: 10509385--10509435 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 19
10509375 AGTTTAGGGT
10509385 ATTA-GGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
10509403 ATTAGGG---ATTGATTAA
1 ATTAGGGTTAATTGATTAA
10509419 ATTTAGGGTTAATTGAT
1 A-TTAGGGTTAATTGAT
10509436 ACATAATCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 10 0.36
17 6 0.21
18 4 0.14
19 2 0.07
20 6 0.21
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (19 bp):
ATTAGGGTTAATTGATTAA
Found at i:10510193 original size:126 final size:126
Alignment explanation
Indices: 10509968--10510212 Score: 391
Period size: 126 Copynumber: 1.9 Consensus size: 126
10509958 TTTCTGCAAG
* * * *
10509968 AATAATTTTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAATGCTTCAAGTAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
*
10510033 AGCAAAATTTCTAAAAAAAGCTCCCACATGGACGCTCTTTTACTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTAAAAAAAGCTACCACATGGACGCTCTTTTACTACAGTAGTTCGTAGAAA
*
10510094 AATAATTCTGAGTATACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
* * * * *
10510159 AGTAAAATTTCTGAAAAAAGCTACCACGTGGACGCTCTTTTGCTATAGTAGTTC
66 AGCAAAATTTCTAAAAAAAGCTACCACATGGACGCTCTTTTACTACAGTAGTTC
10510213 ATATTCAGCA
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 108 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTAAAAAAAGCTACCACATGGACGCTCTTTTACTACAGTAGTTCGTAGAAA
Found at i:10510236 original size:60 final size:60
Alignment explanation
Indices: 10510157--10510271 Score: 194
Period size: 60 Copynumber: 1.9 Consensus size: 60
10510147 GGATGCACTG
* * *
10510157 TCAGTAAAATTTCTGAAAAAAGCTACCACGTGGACGCTCTTTTGCTATAGTAGTTCATAT
1 TCAGCAAAATTTCTAAAAAAAGCTACCACGTGGACGCTCTTTTGCTACAGTAGTTCATAT
*
10510217 TCAGCAAAATTTCTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTT
1 TCAGCAAAATTTCTAAAAAAAGCTACCACGTGGACGCTCTTTTGCTACAGTAGTT
10510272 TGTAGAAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (60 bp):
TCAGCAAAATTTCTAAAAAAAGCTACCACGTGGACGCTCTTTTGCTACAGTAGTTCATAT
Found at i:10510345 original size:186 final size:186
Alignment explanation
Indices: 10510031--10510400 Score: 650
Period size: 186 Copynumber: 2.0 Consensus size: 186
10510021 GGATGCACTG
10510031 TCAGCAAAATTTCTAAAAAAAGCTCCCACATGGACGCTCTTTTACTACAGTAGTTCGTAGAAAAA
1 TCAGCAAAATTTCTAAAAAAAGCTCCCACATGGACGCTCTTTTACTACAGTAGTTCGTAGAAAAA
* * *
10510096 TAATTCTGAGTATACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAG
66 TAATTCTGAATAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGAATGCACTGTCAG
* *
10510161 TAAAATTTCTGAAAAAAGCTACCACGTGGACGCTCTTTTGCTATAGTAGTTCATAT
131 TAAAATTTCTGAAAAAAGCTACCACGTAGACGCTCTTTTGCTACAGTAGTTCATAT
* * *
10510217 TCAGCAAAATTTCTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTGTAGAAAAA
1 TCAGCAAAATTTCTAAAAAAAGCTCCCACATGGACGCTCTTTTACTACAGTAGTTCGTAGAAAAA
*
10510282 TAATTCTGAATAGACGTTTCTGAACAAATAGTGTCAAAATCGCTTCAAGCAGAATGCACTGTCAG
66 TAATTCTGAATAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGAATGCACTGTCAG
*
10510347 TAAAATTTCTGAAAAAAGCTCCCACGTAGACGCTCTTTTGCTACAGTAGTTCAT
131 TAAAATTTCTGAAAAAAGCTACCACGTAGACGCTCTTTTGCTACAGTAGTTCAT
10510401 GGAAAAATAA
Statistics
Matches: 174, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
186 174 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.29
Consensus pattern (186 bp):
TCAGCAAAATTTCTAAAAAAAGCTCCCACATGGACGCTCTTTTACTACAGTAGTTCGTAGAAAAA
TAATTCTGAATAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGAATGCACTGTCAG
TAAAATTTCTGAAAAAAGCTACCACGTAGACGCTCTTTTGCTACAGTAGTTCATAT
Found at i:10510454 original size:126 final size:126
Alignment explanation
Indices: 10510217--10510534 Score: 469
Period size: 126 Copynumber: 2.5 Consensus size: 126
10510207 TAGTTCATAT
* * * *
10510217 TCAGCAAAATTTCTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTGTAGAAAAA
1 TCAGTAAAATTTCTGAAAAAAGCTCCCACGTAGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAA
* *
10510282 TAATTCTGAATAGACGTTTCTGAACAAATAGTGTCAAAATCGCTTCAAGC-AGAATGCACTG
66 TAATTCTGAATAGACGTGTCTGAACAAATAGTGTCAAAATCACTTCAAGCAAG-ATGCACTG
* *
10510343 TCAGTAAAATTTCTGAAAAAAGCTCCCACGTAGACGCTCTTTTGCTACAGTAGTTCATGGAAAAA
1 TCAGTAAAATTTCTGAAAAAAGCTCCCACGTAGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAA
* * *
10510408 TAATTCTGAGTAGACGTGTCTGAACAAATAGTGTTGAAAA-CACTTCAAGTAAGATGCACTG
66 TAATTCTGAATAGACGTGTCTGAACAAATAGTG-TCAAAATCACTTCAAGCAAGATGCACTG
* * * *
10510469 TCAGTAAATTTTTTGAAAAAAACTCCCACATAGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAA
1 TCAGTAAAATTTCTGAAAAAAGCTCCCACGTAGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAA
10510534 T
66 T
10510535 GAGGCTATAA
Statistics
Matches: 173, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
126 166 0.96
127 7 0.04
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (126 bp):
TCAGTAAAATTTCTGAAAAAAGCTCCCACGTAGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAA
TAATTCTGAATAGACGTGTCTGAACAAATAGTGTCAAAATCACTTCAAGCAAGATGCACTG
Found at i:10512191 original size:46 final size:46
Alignment explanation
Indices: 10512115--10512264 Score: 205
Period size: 46 Copynumber: 3.3 Consensus size: 46
10512105 TATGGTCTTA
* *
10512115 CTTATTCATTT--TGTCATGTTGCCATTGTATCTTTCAACCATGGT
1 CTTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGT
* *
10512159 TTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGT
1 CTTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGT
* * *
10512205 CTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAGCCATGGT
1 CTTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGT
**
10512251 CTTACACATTTCAT
1 CTTATTCATTTCAT
10512265 ATCAAAAAGC
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
44 9 0.10
46 84 0.90
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (46 bp):
CTTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGT
Found at i:10512938 original size:5 final size:5
Alignment explanation
Indices: 10512928--10512963 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
10512918 AATAATTAAG
10512928 TATAT TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT
10512964 ATAAAAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:10513033 original size:31 final size:30
Alignment explanation
Indices: 10512998--10513058 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
10512988 GAAACAGAAT
*
10512998 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
10513029 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
10513059 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:10514423 original size:39 final size:39
Alignment explanation
Indices: 10514316--10514450 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
10514306 GACCTCGAGT
* * *
10514316 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
10514357 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
10514395 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
10514434 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
10514451 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:10517170 original size:16 final size:16
Alignment explanation
Indices: 10517149--10517187 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
10517139 AATTTTTTCC
*
10517149 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
10517165 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
10517181 TCTTTCC
1 TTTTTCC
10517188 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:10517240 original size:16 final size:18
Alignment explanation
Indices: 10517214--10517251 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
10517204 TTTCATCCTT
10517214 TTTTTCTTTTTCTATT-C
1 TTTTTCTTTTTCTATTCC
10517231 TTTTTCTTTTT-TATTCC
1 TTTTTCTTTTTCTATTCC
10517248 TTTT
1 TTTT
10517252 ATCTAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTCTTTTTCTATTCC
Found at i:10519698 original size:4 final size:4
Alignment explanation
Indices: 10519689--10519717 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
10519679 AGCAAACGTG
10519689 AGAA AGAA AGAA AGAA AGAA AGAA A-AA AG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
10519718 GGAAATTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:10522722 original size:18 final size:18
Alignment explanation
Indices: 10522696--10522738 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
10522686 GACTAGGAAA
* *
10522696 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
10522714 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
10522732 AGGATAC
1 AGGATAC
10522739 GCACCTAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:10523339 original size:7 final size:7
Alignment explanation
Indices: 10523327--10523359 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
10523317 TATAGTACAT
10523327 AATACTA
1 AATACTA
10523334 AATACTA
1 AATACTA
10523341 AATACTA
1 AATACTA
*
10523348 AATACCA
1 AATACTA
10523355 AATAC
1 AATAC
10523360 GAAACGACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (7 bp):
AATACTA
Found at i:10524421 original size:49 final size:47
Alignment explanation
Indices: 10524368--10524504 Score: 161
Period size: 49 Copynumber: 2.8 Consensus size: 47
10524358 ATGCAAACAT
* *
10524368 CATAAATGAAAAAAAAAATCAAGCAGTATTGAAATTTTAATTATAA-TTG
1 CATAAATGAAAAAAAATATCAA-TAGTATTGAAA-TTTAATTA-AATTTG
*
10524417 CATAAATG-AATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAAAAAAAATATC-AATAGTATTG-AAATTTAATTAAATTTG
*
10524465 CATAAATTAAAAAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAAAATATC-AATAGTATTG-AAATTTAA
10524505 AATTATCACT
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
47 2 0.03
48 34 0.44
49 41 0.53
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (47 bp):
CATAAATGAAAAAAAATATCAATAGTATTGAAATTTAATTAAATTTG
Found at i:10524638 original size:15 final size:16
Alignment explanation
Indices: 10524606--10524638 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
10524596 TTTTTAATTT
10524606 AAAAAAATTAAATTCAA
1 AAAAAAATTAAA-TCAA
10524623 AAAAAAATTAAA-CAA
1 AAAAAAATTAAATCAA
10524638 A
1 A
10524639 GAATTTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
17 12 0.75
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAAATTAAATCAA
Found at i:10527098 original size:26 final size:28
Alignment explanation
Indices: 10527048--10527101 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
10527038 GAGCTCATCT
* *
10527048 AAAATCAGTCAGTGTTATAACCTTTTAA
1 AAAACCAGTCAGTGTTACAACCTTTTAA
10527076 AAAACCAGTCAGTG-TACAA-CTTTTAA
1 AAAACCAGTCAGTGTTACAACCTTTTAA
10527102 GTGAGAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 7 0.29
27 4 0.17
28 13 0.54
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (28 bp):
AAAACCAGTCAGTGTTACAACCTTTTAA
Found at i:10538530 original size:84 final size:84
Alignment explanation
Indices: 10538442--10539048 Score: 667
Period size: 84 Copynumber: 7.3 Consensus size: 84
10538432 AATCGGCCCA
* **** * * * *
10538442 TTTTCTTGCTTCAACAGCCTTCTTCTTGGTTTCTTCTGCAATCTTTCTTTGCGCCTCTGCTTCAG
1 TTTTCTTTCTTCAACAGCCTTCTTCTTCAACTCTTCTGCAATCTTCCTTTGCTCCTGTGCTTTAG
**
10538507 CCATCTGTAAATCAGCATG
66 CCATCTCCAAATCAGCATG
* *
10538526 TTTTCGTTCTTCAACTGCCTTCTTCTT-AATCTCTTCTGCAATCTT-CTTCTGCTCCTGTGCTTT
1 TTTTCTTTCTTCAACAGCCTTCTTCTTCAA-CTCTTCTGCAATCTTCCTT-TGCTCCTGTGCTTT
*
10538589 AGCCATCTCCAAAGCCA-CATG
64 AGCCATCTCCAAA-TCAGCATG
* * *
10538610 TTTTCTTTCTTCAACAGCCTTCTTCTTCGACTCTTCTGCAATCTTCCTCTCCTCCTGTGCTTTAG
1 TTTTCTTTCTTCAACAGCCTTCTTCTTCAACTCTTCTGCAATCTTCCTTTGCTCCTGTGCTTTAG
*
10538675 CCATCTCCAAAGCAGCATG
66 CCATCTCCAAATCAGCATG
* *
10538694 TTTTCTTTCTTCAGA-AGCCTTCTTCTTCAATTCTTCTGCAGTCTTCCTCTT-CTCCTGTGCTTT
1 TTTTCTTTCTTCA-ACAGCCTTCTTCTTCAACTCTTCTGCAATCTTCCT-TTGCTCCTGTGCTTT
* **
10538757 AGCAATCTCCAAATCAGCACA
64 AGCCATCTCCAAATCAGCATG
* * *
10538778 TTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTGCAGTCTTCCTTCGCTCCTGTGCTTTAG
1 TTTTCTTTCTTCAACAGCCTTCTTCTTCAACTCTTCTGCAATCTTCCTTTGCTCCTGTGCTTTAG
* **
10538843 CAATCTCCAAATCAGCACA
66 CCATCTCCAAATCAGCATG
* * * *
10538862 TTTTCTTTCTTCAACAGCCTTCTTCTTCATCTCTTCTGCAACCTTCCTCTCCTCCTGTGCTTTAG
1 TTTTCTTTCTTCAACAGCCTTCTTCTTCAACTCTTCTGCAATCTTCCTTTGCTCCTGTGCTTTAG
* **
10538927 CCATCTCCAGATCAGCACA
66 CCATCTCCAAATCAGCATG
* * * * * * *
10538946 TTTTCTATCTTCAAAAG-C-T-TTCTT-AGATTTTTC-GACAAACTTCCTCTGCTCCTTTGCTTT
1 TTTTCTTTCTTCAACAGCCTTCTTCTTCA-ACTCTTCTG-CAATCTTCCTTTGCTCCTGTGCTTT
**
10539006 AGCCATCTCCAAATCAGCACA
64 AGCCATCTCCAAATCAGCATG
*
10539027 TTTTCTTTCTTCAACCGCCTTC
1 TTTTCTTTCTTCAACAGCCTTC
10539049 CTTGTTTCTT
Statistics
Matches: 460, Mismatches: 48, Indels: 30
0.86 0.09 0.06
Matches are distributed among these distances:
80 2 0.00
81 65 0.14
82 2 0.00
83 9 0.02
84 375 0.82
85 7 0.02
ACGTcount: A:0.17, C:0.32, G:0.10, T:0.41
Consensus pattern (84 bp):
TTTTCTTTCTTCAACAGCCTTCTTCTTCAACTCTTCTGCAATCTTCCTTTGCTCCTGTGCTTTAG
CCATCTCCAAATCAGCATG
Found at i:10538868 original size:252 final size:249
Alignment explanation
Indices: 10538416--10539048 Score: 771
Period size: 252 Copynumber: 2.5 Consensus size: 249
10538406 AGTCGCTTCC
* * * * * * **
10538416 GCTTTAGCGATCTCAAAATCGGCCCATTTTCTTGCTTCAACAGCCTTCTTCTTGGTTTCTTCTGC
1 GCTTTAGCCATCTCCAAAGCAGCACATTTTCTTTCTTCAA-AGCCTTCTTCTT-AATTCTTCTGC
* * * ** ** * *
10538481 AATCTTTCT-TTGCGCCTCTGCTTCAGCCATCTGTAAATCAGCATGTTTTCGTTCTTCAACTGCC
64 AATCTTCCTCTT-CTCCTCTGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCC
*
10538545 TTCTTCTTAATCTCTTCTGCAATCTTCTTCTGCTCCTGTGCTTTAGCCATCTCCAAAGCCACATG
128 TTCTTCTTAATCTCTTCTGCAATCTTCTTCTGCTCCTGTGCTTTAGCAATCTCCAAAGCCACA-G
*
10538610 TTTTCTTTCTTCAACAGCCTTCTTCTTCGA-CTCTTCTGCAATCTTCCTCTCCTCCTGT
192 TTTTCTTTCTTCAACAGCCTTCTTCTTC-ATCTCTTCTGCAACCTTCCTCTCCTCCTGT
**
10538668 GCTTTAGCCATCTCCAAAGCAGCATGTTTTCTTTCTTCAGAAGCCTTCTTCTTCAATTCTTCTGC
1 GCTTTAGCCATCTCCAAAGCAGCACATTTTCTTTCTTCA-AAGCCTTCTTCTT-AATTCTTCTGC
* * *
10538733 AGTCTTCCTCTTCTCCTGTGCTTTAGCAATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCT
64 AATCTTCCTCTTCTCCTCTGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCT
* *
10538798 TCTTCTTCAAT-TCTTCTGCAGTCTTCCTTC-GCTCCTGTGCTTTAGCAATCTCCAAATCAGCAC
129 TCTTCTT-AATCTCTTCTGCAATCTT-CTTCTGCTCCTGTGCTTTAGCAATCTCCAAAGC--CAC
10538861 A-TTTTCTTTCTTCAACAGCCTTCTTCTTCATCTCTTCTGCAACCTTCCTCTCCTCCTGT
190 AGTTTTCTTTCTTCAACAGCCTTCTTCTTCATCTCTTCTGCAACCTTCCTCTCCTCCTGT
* * * *
10538920 GCTTTAGCCATCTCCAGATCAGCACATTTTCTATCTTCAAAAG-C-T-TTCTTAGATTTTTC-GA
1 GCTTTAGCCATCTCCAAAGCAGCACATTTTCTTTCTTC-AAAGCCTTCTTCTTA-ATTCTTCTG-
* * * *
10538981 CAAACTTCCTCTGCTCCTTTGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACCGCC
63 CAATCTTCCTCTTCTCCTCTGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCC
10539046 TTC
128 TTC
10539049 CTTGTTTCTT
Statistics
Matches: 332, Mismatches: 39, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
248 2 0.01
249 73 0.22
250 1 0.00
251 2 0.01
252 239 0.72
253 11 0.03
254 4 0.01
ACGTcount: A:0.17, C:0.32, G:0.10, T:0.40
Consensus pattern (249 bp):
GCTTTAGCCATCTCCAAAGCAGCACATTTTCTTTCTTCAAAGCCTTCTTCTTAATTCTTCTGCAA
TCTTCCTCTTCTCCTCTGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTC
TTCTTAATCTCTTCTGCAATCTTCTTCTGCTCCTGTGCTTTAGCAATCTCCAAAGCCACAGTTTT
CTTTCTTCAACAGCCTTCTTCTTCATCTCTTCTGCAACCTTCCTCTCCTCCTGT
Found at i:10539564 original size:17 final size:17
Alignment explanation
Indices: 10539538--10539572 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
10539528 GGGCAAAGTT
*
10539538 ACCAATTAGGGGAACAA
1 ACCAAATAGGGGAACAA
10539555 ACCAAATAGGGGAACAA
1 ACCAAATAGGGGAACAA
10539572 A
1 A
10539573 TATTGAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.17, G:0.23, T:0.09
Consensus pattern (17 bp):
ACCAAATAGGGGAACAA
Found at i:10540908 original size:18 final size:18
Alignment explanation
Indices: 10540874--10540911 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
10540864 TCAAAAAATC
10540874 ATAAAAATAAACTTTTTTA
1 ATAAAAATAAAC-TTTTTA
10540893 ATAAAAATATAA-TTTTTA
1 ATAAAAATA-AACTTTTTA
10540911 A
1 A
10540912 AGTAGTAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 9 0.50
20 2 0.11
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAAAATAAACTTTTTA
Found at i:10548645 original size:23 final size:23
Alignment explanation
Indices: 10548619--10548706 Score: 131
Period size: 23 Copynumber: 3.8 Consensus size: 23
10548609 ATGGTTTTAG
* * *
10548619 TTTTTAGGGTTTAGGGTTCATGA
1 TTTTTAGGGTTTATGATTTATGA
* *
10548642 TTTTTAGGGCTTATGATTTATGG
1 TTTTTAGGGTTTATGATTTATGA
10548665 TTTTTAGGGTTTATGATTTATGA
1 TTTTTAGGGTTTATGATTTATGA
10548688 TTTTTAGGGTTTATGATTT
1 TTTTTAGGGTTTATGATTT
10548707 TATGTTTGTG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.18, C:0.02, G:0.25, T:0.55
Consensus pattern (23 bp):
TTTTTAGGGTTTATGATTTATGA
Found at i:10548649 original size:16 final size:16
Alignment explanation
Indices: 10548628--10548660 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10548618 GTTTTTAGGG
10548628 TTTAGGG-TTCATGATT
1 TTTAGGGCTT-ATGATT
10548644 TTTAGGGCTTATGATT
1 TTTAGGGCTTATGATT
10548660 T
1 T
10548661 ATGGTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.18, C:0.06, G:0.24, T:0.52
Consensus pattern (16 bp):
TTTAGGGCTTATGATT
Found at i:10548673 original size:46 final size:46
Alignment explanation
Indices: 10548607--10548726 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 46
10548597 TTTTTGGGTT
*
10548607 TTATGGTTTTA-GTTTTTAGGGTTTAGGGTTCATGATTTTTAGGGC
1 TTATGATTTTATGTTTTTAGGGTTTAGGGTTCATGATTTTTAGGGC
* * * *
10548652 TTATGA-TTTATGGTTTTTAGGGTTTATGATTTATGATTTTTAGGGT
1 TTATGATTTTAT-GTTTTTAGGGTTTAGGGTTCATGATTTTTAGGGC
*
10548698 TTATGATTTTATGTTTGT-GGG-TTAGGGTT
1 TTATGATTTTATGTTTTTAGGGTTTAGGGTT
10548727 TAGAGTTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
44 10 0.16
45 8 0.12
46 41 0.64
47 5 0.08
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.54
Consensus pattern (46 bp):
TTATGATTTTATGTTTTTAGGGTTTAGGGTTCATGATTTTTAGGGC
Found at i:10548693 original size:16 final size:16
Alignment explanation
Indices: 10548674--10548707 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10548664 GTTTTTAGGG
*
10548674 TTTATGATTTATGATT
1 TTTAGGATTTATGATT
*
10548690 TTTAGGGTTTATGATT
1 TTTAGGATTTATGATT
10548706 TT
1 TT
10548708 ATGTTTGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.62
Consensus pattern (16 bp):
TTTAGGATTTATGATT
Found at i:10548907 original size:15 final size:16
Alignment explanation
Indices: 10548870--10548910 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
10548860 TGTTTATTAA
*
10548870 TTTTAGGGTTTAGTGG
1 TTTTAAGGTTTAGTGG
10548886 -TTT-AGGTTTAG-GG
1 TTTTAAGGTTTAGTGG
10548899 TTTTAAGGTTTA
1 TTTTAAGGTTTA
10548911 TGATTTATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
13 2 0.09
14 10 0.45
15 10 0.45
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (16 bp):
TTTTAAGGTTTAGTGG
Found at i:10548908 original size:21 final size:21
Alignment explanation
Indices: 10548871--10548910 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10548861 GTTTATTAAT
*
10548871 TTTAGGGTTTAGTGGTTTAGG
1 TTTAGGGTTTAGAGGTTTAGG
10548892 TTTAGGGTTTTA-AGGTTTA
1 TTTAGGG-TTTAGAGGTTTA
10548911 TGATTTATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (21 bp):
TTTAGGGTTTAGAGGTTTAGG
Found at i:10548929 original size:29 final size:29
Alignment explanation
Indices: 10548870--10548931 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
10548860 TGTTTATTAA
* * * *
10548870 TTTTAGGGTTTAGTGGTTTAGGTTTAGGG
1 TTTTAAGGTTTAGTGATTTAGGCTTAAGG
10548899 TTTTAAGGTTTA-TGATTTATGGCTTAAGG
1 TTTTAAGGTTTAGTGATTTA-GGCTTAAGG
10548928 TTTT
1 TTTT
10548932 GGTGGTGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.18, C:0.02, G:0.29, T:0.52
Consensus pattern (29 bp):
TTTTAAGGTTTAGTGATTTAGGCTTAAGG
Found at i:10548979 original size:24 final size:23
Alignment explanation
Indices: 10548943--10549017 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 23
10548933 GTGGTGTTGG
* *
10548943 TGTTTTAGGGTTTATTGTTTTAT
1 TGTTTTAAGGTTTAGTGTTTTAT
10548966 TGTTATTAAGGTTTAGTGTTTT-T
1 TGTT-TTAAGGTTTAGTGTTTTAT
* ** * *
10548989 GGGGTTAAGTTTTAGGGTTTTA-
1 TGTTTTAAGGTTTAGTGTTTTAT
10549011 TGTTTTA
1 TGTTTTA
10549018 TGTTTTAGCG
Statistics
Matches: 40, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
22 19 0.47
23 6 0.15
24 15 0.38
ACGTcount: A:0.16, C:0.00, G:0.25, T:0.59
Consensus pattern (23 bp):
TGTTTTAAGGTTTAGTGTTTTAT
Found at i:10549134 original size:30 final size:30
Alignment explanation
Indices: 10549100--10549162 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
10549090 GGGTTTATTA
*
10549100 TTTTTAGGGTTTAGGATTTTATTA-TCATGG
1 TTTTTA-GGTTTAGGACTTTATTACTCATGG
* *
10549130 TTTTTAGGTTTAGGGCTTTATTACTTATGG
1 TTTTTAGGTTTAGGACTTTATTACTCATGG
10549160 TTT
1 TTT
10549163 ATGATTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.17, C:0.05, G:0.22, T:0.56
Consensus pattern (30 bp):
TTTTTAGGTTTAGGACTTTATTACTCATGG
Found at i:10549163 original size:14 final size:14
Alignment explanation
Indices: 10549146--10549192 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
10549136 GGTTTAGGGC
*
10549146 TTTATTACTTATGG
1 TTTATTATTTATGG
* *
10549160 TTTATGATTTATTG
1 TTTATTATTTATGG
10549174 TTTA-TAGTTTATGG
1 TTTATTA-TTTATGG
10549188 TTTAT
1 TTTAT
10549193 GGTTTTAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
13 1 0.04
14 25 0.96
ACGTcount: A:0.21, C:0.02, G:0.15, T:0.62
Consensus pattern (14 bp):
TTTATTATTTATGG
Found at i:10549164 original size:7 final size:7
Alignment explanation
Indices: 10549154--10549197 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
10549144 GCTTTATTAC
10549154 TTATGGT
1 TTATGGT
*
10549161 TTATGAT
1 TTATGGT
*
10549168 TTATTGT
1 TTATGGT
*
10549175 TTATAGT
1 TTATGGT
10549182 TTATGGT
1 TTATGGT
10549189 TTATGGT
1 TTATGGT
10549196 TT
1 TT
10549198 TAGGATTTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.18, C:0.00, G:0.20, T:0.61
Consensus pattern (7 bp):
TTATGGT
Found at i:10549172 original size:21 final size:21
Alignment explanation
Indices: 10549146--10549192 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
10549136 GGTTTAGGGC
*
10549146 TTTATTACTTATGGTTTATGA
1 TTTATTACTTATAGTTTATGA
** *
10549167 TTTATTGTTTATAGTTTATGG
1 TTTATTACTTATAGTTTATGA
10549188 TTTAT
1 TTTAT
10549193 GGTTTTAGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.02, G:0.15, T:0.62
Consensus pattern (21 bp):
TTTATTACTTATAGTTTATGA
Found at i:10549415 original size:15 final size:16
Alignment explanation
Indices: 10549387--10549430 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
10549377 AGAGTTTATT
10549387 GTTTTTAGTATTTAGG
1 GTTTTTAGTATTTAGG
*
10549403 GTTTTTA-TTTTTAGG
1 GTTTTTAGTATTTAGG
* *
10549418 GTGTTTAGGATTT
1 GTTTTTAGTATTT
10549431 TATGTTTAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.16, C:0.00, G:0.25, T:0.59
Consensus pattern (16 bp):
GTTTTTAGTATTTAGG
Found at i:10550687 original size:40 final size:38
Alignment explanation
Indices: 10550630--10550751 Score: 148
Period size: 35 Copynumber: 3.3 Consensus size: 38
10550620 GAAATGCCAT
**
10550630 CTACATTTCTTAACTCAGTATGGATTTGATAATACCATAC
1 CTACATTTCACAACTCAGTATGGA--TGATAATACCATAC
* *
10550670 CTACATTTCACAGCTCAGTAT-G--GATAATACTATAC
1 CTACATTTCACAACTCAGTATGGATGATAATACCATAC
10550705 CTACATTTCACAACTCAGTATGGATG---ATACCATAC
1 CTACATTTCACAACTCAGTATGGATGATAATACCATAC
10550740 CTACATTTCACA
1 CTACATTTCACA
10550752 CTTTGCCATG
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
35 52 0.71
36 1 0.01
38 1 0.01
39 1 0.01
40 18 0.25
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.33
Consensus pattern (38 bp):
CTACATTTCACAACTCAGTATGGATGATAATACCATAC
Found at i:10550705 original size:35 final size:35
Alignment explanation
Indices: 10550657--10550751 Score: 163
Period size: 35 Copynumber: 2.7 Consensus size: 35
10550647 GTATGGATTT
*
10550657 GATAATACCATACCTACATTTCACAGCTCAGTATG
1 GATAATACCATACCTACATTTCACAACTCAGTATG
*
10550692 GATAATACTATACCTACATTTCACAACTCAGTATG
1 GATAATACCATACCTACATTTCACAACTCAGTATG
*
10550727 GATGATACCATACCTACATTTCACA
1 GATAATACCATACCTACATTTCACA
10550752 CTTTGCCATG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 56 1.00
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.29
Consensus pattern (35 bp):
GATAATACCATACCTACATTTCACAACTCAGTATG
Found at i:10552152 original size:21 final size:21
Alignment explanation
Indices: 10552128--10552178 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
10552118 CATTTATTGC
*
10552128 TTATAGTTTAGGGTTTA-TAGT
1 TTATAGTTTAAGGTTTAGT-GT
*
10552149 TTATATTTTAAGGTTTAGTGT
1 TTATAGTTTAAGGTTTAGTGT
*
10552170 TTATGGTTT
1 TTATAGTTT
10552179 TATTATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.57
Consensus pattern (21 bp):
TTATAGTTTAAGGTTTAGTGT
Found at i:10552231 original size:22 final size:22
Alignment explanation
Indices: 10552205--10552281 Score: 93
Period size: 22 Copynumber: 3.5 Consensus size: 22
10552195 TAGGAATTAT
*
10552205 GGTTTATTGTTTTTGTTTTTAG
1 GGTTTATTGTTTTTATTTTTAG
* *
10552227 GGTTTAGTGTTTTTATTTTTAA
1 GGTTTATTGTTTTTATTTTTAG
*
10552249 GGTATTA-TGTTTTTATGTTTAG
1 GGT-TTATTGTTTTTATTTTTAG
*
10552271 GGTTTCTTGTT
1 GGTTTATTGTT
10552282 GTAGTGCCTA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.04
22 42 0.89
23 3 0.06
ACGTcount: A:0.13, C:0.01, G:0.22, T:0.64
Consensus pattern (22 bp):
GGTTTATTGTTTTTATTTTTAG
Found at i:10552402 original size:22 final size:23
Alignment explanation
Indices: 10552377--10552427 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
10552367 GGGGTTATAG
*
10552377 TTTTAGAT-T-TGAGTTTCAGGGT
1 TTTTAGATCTATGAGTTT-AGGAT
10552399 TTTTAGATCTATGAGTTTAGGAT
1 TTTTAGATCTATGAGTTTAGGAT
10552422 TTTTAG
1 TTTTAG
10552428 TTTATTGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 8 0.31
23 11 0.42
24 7 0.27
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.51
Consensus pattern (23 bp):
TTTTAGATCTATGAGTTTAGGAT
Found at i:10552534 original size:15 final size:14
Alignment explanation
Indices: 10552516--10552561 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
10552506 GTGTTTGTGA
*
10552516 TTTTATGTTTATGG
1 TTTTTTGTTTATGG
*
10552530 TTTTTGTGTTTATTG
1 TTTTT-TGTTTATGG
*
10552545 TTTTTTATTTATGG
1 TTTTTTGTTTATGG
10552559 TTT
1 TTT
10552562 AGCATATAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 14 0.52
15 13 0.48
ACGTcount: A:0.11, C:0.00, G:0.17, T:0.72
Consensus pattern (14 bp):
TTTTTTGTTTATGG
Found at i:10554052 original size:17 final size:17
Alignment explanation
Indices: 10554030--10554063 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10554020 TTTTCTAAGG
10554030 TGATATTGCACTCATCA
1 TGATATTGCACTCATCA
10554047 TGATATTGCACTCATCA
1 TGATATTGCACTCATCA
10554064 CATGGCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (17 bp):
TGATATTGCACTCATCA
Found at i:10557537 original size:25 final size:25
Alignment explanation
Indices: 10557486--10557534 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
10557476 AATTTAAATT
10557486 TTATATTAATATTAAATAAATATAA
1 TTATATTAATATTAAATAAATATAA
*
10557511 TTATATTAATCTTAAATAAA-ATAA
1 TTATATTAATATTAAATAAATATAA
10557535 ATTCCCCTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (25 bp):
TTATATTAATATTAAATAAATATAA
Found at i:10562860 original size:23 final size:20
Alignment explanation
Indices: 10562834--10562889 Score: 51
Period size: 23 Copynumber: 2.5 Consensus size: 20
10562824 ATAATTAATG
10562834 TTTAATTATATTTAATATATTT
1 TTTAATT-TATTT-ATATATTT
10562856 ATTTATATGTCT-TTTATATATTT
1 -TTTA-AT-T-TATTTATATATTT
10562879 TTTAATTTATT
1 TTTAATTTATT
10562890 GATGATGTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
19 1 0.03
20 3 0.10
21 2 0.07
22 4 0.14
23 12 0.41
24 5 0.17
25 2 0.07
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTAATTTATTTATATATTT
Found at i:10568653 original size:27 final size:28
Alignment explanation
Indices: 10568620--10568672 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
10568610 AACTAAATAT
*
10568620 ATGATGTTTTATACTAT-CTAATTTTAC
1 ATGATGTTTTATACCATACTAATTTTAC
10568647 ATGATGTTTTATACCATACTAATTTT
1 ATGATGTTTTATACCATACTAATTTT
10568673 TAAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.51
Consensus pattern (28 bp):
ATGATGTTTTATACCATACTAATTTTAC
Done.