Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 280 of 335
Found at i:84732719 original size:101 final size:99
Alignment explanation
Indices: 84732507--84732753 Score: 309
Period size: 101 Copynumber: 2.5 Consensus size: 99
84732497 ACCAAAGTTC
* * * *
84732507 TCTGGTACGCATAGTAGCCTGCACTTAGTACTATACATGTGACCTAACAATCTGGTACACATAGG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTAAACACGTGACCTAACAATCTGGTACACATAGG
* * *
84732572 AGCCTGCACTTATACTATACACGTGACCTAACCA
66 AGCCTGCACTTATACTACACACGCGACCTAACAA
* * * * * *
84732606 TCTGATACACGTAGTAACCTGCACTTAGTACTACACACGTGATC-AGAGCTAT-TGGGTACGCAT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTAAACACGTGACCTA-A-CAATCT-GGTACACAT
* *
84732669 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
63 AGGAGCCTGCACTTA-TACTACACACGCGACCTAACAA
84732707 TCTGGTACACGTAGTAGCCTGCACTTAGTACTAAACACGTGACCTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTAAACACGTGACCTAA
84732754 AACTGTCTTA
Statistics
Matches: 125, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
98 1 0.01
99 39 0.31
100 25 0.20
101 59 0.47
102 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTAAACACGTGACCTAACAATCTGGTACACATAGG
AGCCTGCACTTATACTACACACGCGACCTAACAA
Found at i:84735218 original size:2 final size:2
Alignment explanation
Indices: 84735211--84735247 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
84735201 ACTTCTCGTG
84735211 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84735248 CATAAAGAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:84737751 original size:39 final size:39
Alignment explanation
Indices: 84737708--84737785 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
84737698 GCTTCATTCT
*
84737708 CTAATTTCTTAAAGTTTAAACAATCAATGTATAAATGCC
1 CTAATTTCTTAAAGTTTAAACAATCAATGCATAAATGCC
84737747 CTAATTTCTTAAAGTTTAAACAATCAATGCATAAATGCC
1 CTAATTTCTTAAAGTTTAAACAATCAATGCATAAATGCC
84737786 TATGTTTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.35
Consensus pattern (39 bp):
CTAATTTCTTAAAGTTTAAACAATCAATGCATAAATGCC
Found at i:84749890 original size:12 final size:12
Alignment explanation
Indices: 84749869--84749903 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
84749859 TATGTATCTA
84749869 TTTCTTACCAAT
1 TTTCTTACCAAT
*
84749881 TTTCTCACCAAT
1 TTTCTTACCAAT
84749893 TTTCTTACCAA
1 TTTCTTACCAA
84749904 ACCTCTCCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.46
Consensus pattern (12 bp):
TTTCTTACCAAT
Found at i:84753472 original size:7 final size:7
Alignment explanation
Indices: 84753460--84753494 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
84753450 AAGGAGGGAT
84753460 GATGAGG
1 GATGAGG
84753467 GATGAGG
1 GATGAGG
*
84753474 GATGATG
1 GATGAGG
*
84753481 GATGATG
1 GATGAGG
84753488 GATGAGG
1 GATGAGG
84753495 ATCAAATGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.51, T:0.20
Consensus pattern (7 bp):
GATGAGG
Found at i:84753993 original size:30 final size:31
Alignment explanation
Indices: 84753952--84754015 Score: 121
Period size: 30 Copynumber: 2.1 Consensus size: 31
84753942 ATTATTAAAT
84753952 ATAATTTTATATTTTATTATTTAATTTAATC
1 ATAATTTTATATTTTATTATTTAATTTAATC
84753983 ATAA-TTTATATTTTATTATTTAATTTAATC
1 ATAATTTTATATTTTATTATTTAATTTAATC
84754013 ATA
1 ATA
84754016 CATGGCCCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 29 0.88
31 4 0.12
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (31 bp):
ATAATTTTATATTTTATTATTTAATTTAATC
Found at i:84778790 original size:52 final size:52
Alignment explanation
Indices: 84778719--84778821 Score: 188
Period size: 52 Copynumber: 2.0 Consensus size: 52
84778709 ATCGAGTTGT
* *
84778719 CATGGAATGTGTTCTGAATGTTATTAAGCATTTTGATAATAAATTGAGTTTC
1 CATGGAATGTGTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTTC
84778771 CATGGAATGTGTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTT
1 CATGGAATGTGTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTT
84778822 AATTAAAGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (52 bp):
CATGGAATGTGTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTTC
Found at i:84783070 original size:17 final size:17
Alignment explanation
Indices: 84783048--84783092 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
84783038 CTGCCTATGT
84783048 TGGCCCACACGCTCGTG
1 TGGCCCACACGCTCGTG
84783065 TGGCCCACACGCTCGTG
1 TGGCCCACACGCTCGTG
84783082 TGGCCCACACG
1 TGGCCCACACG
84783093 ACCTAAGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.13, C:0.42, G:0.29, T:0.16
Consensus pattern (17 bp):
TGGCCCACACGCTCGTG
Found at i:84789349 original size:18 final size:17
Alignment explanation
Indices: 84789326--84789397 Score: 67
Period size: 18 Copynumber: 4.0 Consensus size: 17
84789316 AGAAGTGTCG
84789326 TTCATTTCCAAAACGTTA
1 TTCATTT-CAAAACGTTA
84789344 TTCATTATCACAAA-GTTA
1 TTCATT-TCA-AAACGTTA
84789362 TACTC-TTTCAAAACGTTA
1 T--TCATTTCAAAACGTTA
*
84789380 TTAATTTTCAAAACGTTA
1 TTCA-TTTCAAAACGTTA
84789398 CTTATAGCGG
Statistics
Matches: 46, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
16 1 0.02
17 3 0.07
18 34 0.74
19 6 0.13
20 2 0.04
ACGTcount: A:0.36, C:0.18, G:0.06, T:0.40
Consensus pattern (17 bp):
TTCATTTCAAAACGTTA
Found at i:84795719 original size:23 final size:22
Alignment explanation
Indices: 84795653--84795733 Score: 85
Period size: 21 Copynumber: 3.7 Consensus size: 22
84795643 TCAGTATACA
84795653 ACACATAAGTGCCTGAA-ATGAC
1 ACACA-AAGTGCCTGAATATGAC
* * *
84795675 ACACGAGGTGCCTG-ATACGAC
1 ACACAAAGTGCCTGAATATGAC
84795696 ACACAAAGTGCCTGAAATATGAC
1 ACACAAAGTGCCTG-AATATGAC
* *
84795719 ACATAAAGTGTCTGA
1 ACACAAAGTGCCTGA
84795734 TCAGTAAAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.02
21 24 0.50
22 5 0.10
23 18 0.38
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (22 bp):
ACACAAAGTGCCTGAATATGAC
Found at i:84808006 original size:12 final size:12
Alignment explanation
Indices: 84807989--84808014 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84807979 GGTCAAGTGG
84807989 TTTTATAAATAT
1 TTTTATAAATAT
84808001 TTTTATAAATAT
1 TTTTATAAATAT
84808013 TT
1 TT
84808015 ACAAAGTGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTTATAAATAT
Found at i:84809258 original size:29 final size:29
Alignment explanation
Indices: 84809001--84809287 Score: 290
Period size: 29 Copynumber: 9.9 Consensus size: 29
84808991 ATCCTCAAAC
* *
84809001 ATGAAAAGAGATGGTTTCGACCATCAAAT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
*
84809030 ATGAAAAGGGATGGTTTCGACCATCTAAT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
*
84809059 ATGAAAAGGGATGGTGAT-GACCATCGAAT
1 ATGAAAAGGGATGGT-TTCGACCATCGAAT
* *** *
84809088 ATGAAAAGGGAGGGTGAAGACCATCAAAT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
* * *** ** *
84809117 ATAAAAAGGGATGATGAAGACCATTAAAC
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
*
84809146 ATGAAAAGGGATGGTTTCGACCATTGAAT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
**
84809175 ATGAAAAGGGATGGTGACGACCATCGAAT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
* *
84809204 ATGAAAAGGGATGGTGAT-AACCATCGAAT
1 ATGAAAAGGGATGGT-TTCGACCATCGAAT
*
84809233 ATGAAAAGGGATGGTTTCGACCATCGATT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
* * * *
84809262 AAAGAAAAAGGATGATTACGACCATC
1 -ATGAAAAGGGATGGTTTCGACCATC
84809288 ATTTAGCACA
Statistics
Matches: 220, Mismatches: 33, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
28 1 0.00
29 197 0.90
30 22 0.10
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.21
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTTCGACCATCGAAT
Found at i:84810744 original size:29 final size:30
Alignment explanation
Indices: 84810694--84810759 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 30
84810684 ATTTTATAAT
*
84810694 TATTTAAATAGATAATTATTATT-TATTTAA
1 TATTTTAATAGATAATTATTATTAT-TTTAA
*
84810724 TATTTTAATAAGAT-ATT-TTATTATTTTAT
1 TATTTTAAT-AGATAATTATTATTATTTTAA
84810753 TATTTTA
1 TATTTTA
84810760 TTTAGTCTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 16 0.50
30 12 0.38
31 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (30 bp):
TATTTTAATAGATAATTATTATTATTTTAA
Found at i:84810748 original size:8 final size:8
Alignment explanation
Indices: 84810737--84810761 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
84810727 TTTAATAAGA
84810737 TATTTTAT
1 TATTTTAT
84810745 TATTTTAT
1 TATTTTAT
84810753 TATTTTAT
1 TATTTTAT
84810761 T
1 T
84810762 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:84810808 original size:2 final size:2
Alignment explanation
Indices: 84810803--84810842 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
84810793 TGTGGGAAAA
84810803 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
84810843 TCCATCATTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:84811431 original size:26 final size:26
Alignment explanation
Indices: 84811392--84811501 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
84811382 TGATACAAAT
84811392 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
**
84811418 TGATAATAAATTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
84811444 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
84811470 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
84811496 TGATAA
1 TGATAA
84811502 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:84815456 original size:33 final size:33
Alignment explanation
Indices: 84815414--84815480 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
84815404 TTGAGCCTAA
84815414 GGATGAAATCATCATTAATTAAAAAGTTTAGGG
1 GGATGAAATCATCATTAATTAAAAAGTTTAGGG
*
84815447 GGATGAAATCGTCATTAATTAAAAAGTTTAGGG
1 GGATGAAATCATCATTAATTAAAAAGTTTAGGG
84815480 G
1 G
84815481 TAAAATGGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.30
Consensus pattern (33 bp):
GGATGAAATCATCATTAATTAAAAAGTTTAGGG
Found at i:84816544 original size:31 final size:31
Alignment explanation
Indices: 84816506--84816565 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
84816496 GTATATGATA
84816506 AATTGATCTCAACATGGTCAAGATATAGTAT
1 AATTGATCTCAACATGGTCAAGATATAGTAT
84816537 AATTGATCTCAACATGGTCAAGATATAGT
1 AATTGATCTCAACATGGTCAAGATATAGT
84816566 TTACTTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (31 bp):
AATTGATCTCAACATGGTCAAGATATAGTAT
Found at i:84819303 original size:43 final size:42
Alignment explanation
Indices: 84819235--84819316 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
84819225 ATAAATAAAT
* * *
84819235 AAAAATAGTGAATATCAATATAAAGAGCGAAACAAAATTTTG
1 AAAAATAGCGAATACCAATATAAAGAGCAAAACAAAATTTTG
*
84819277 AAAAATTAGCGAATACCAATCA-AAAGAGCAAAACACAATT
1 AAAAA-TAGCGAATACCAAT-ATAAAGAGCAAAACAAAATT
84819317 CAAATCTCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 5 0.15
43 28 0.82
44 1 0.03
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.20
Consensus pattern (42 bp):
AAAAATAGCGAATACCAATATAAAGAGCAAAACAAAATTTTG
Found at i:84821119 original size:18 final size:19
Alignment explanation
Indices: 84821096--84821132 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
84821086 ATATATGTAT
84821096 TAGAAGTT-ATGATGGTAA
1 TAGAAGTTAATGATGGTAA
84821114 TAGAAGTTAAATGATGGTA
1 TAGAAGTT-AATGATGGTA
84821133 TGAATTGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (19 bp):
TAGAAGTTAATGATGGTAA
Found at i:84829610 original size:13 final size:13
Alignment explanation
Indices: 84829592--84829627 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
84829582 AGATATAGTG
84829592 TGTTGTGGAGGAT
1 TGTTGTGGAGGAT
*
84829605 TGTTGTGGGGGAT
1 TGTTGTGGAGGAT
*
84829618 TGTTGGGGAG
1 TGTTGTGGAG
84829628 TGATATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.53, T:0.36
Consensus pattern (13 bp):
TGTTGTGGAGGAT
Found at i:84829827 original size:36 final size:36
Alignment explanation
Indices: 84829739--84829809 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
84829729 AACCATTGGT
* * *
84829739 GTGTTTTAGATGGATTGGCTCTTATGAGTATCTAGA
1 GTGTTTCAGATGGATTAGCTCTTATGAGCATCTAGA
84829775 GTGTTTCAGATGGATTAGCTCTTATGAGCATCTAG
1 GTGTTTCAGATGGATTAGCTCTTATGAGCATCTAG
84829810 TGTTTTTTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.11, G:0.27, T:0.39
Consensus pattern (36 bp):
GTGTTTCAGATGGATTAGCTCTTATGAGCATCTAGA
Found at i:84840720 original size:18 final size:17
Alignment explanation
Indices: 84840686--84840730 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
84840676 TAAAAAAATT
84840686 ATTTTAATTTTCATTTA
1 ATTTTAATTTTCATTTA
*
84840703 ATTTTAACTTTTCGTTTA
1 ATTTTAA-TTTTCATTTA
84840721 ATTTT-ATTTT
1 ATTTTAATTTT
84840731 AAGCTTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 4 0.15
17 8 0.31
18 14 0.54
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (17 bp):
ATTTTAATTTTCATTTA
Found at i:84841580 original size:30 final size:28
Alignment explanation
Indices: 84841515--84841580 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
84841505 TAAAAAAAAG
*
84841515 TGTTGCT-TTTCCTTGCTATTTTTTATT
1 TGTTGCTATTTCCTTGCTATTTTTTAAT
* * *
84841542 TTTTGCTATTTTCTTGTTATTTTTTCACAT
1 TGTTGCTATTTCCTTGCTATTTTTT-A-AT
84841572 TGTTGCTAT
1 TGTTGCTAT
84841581 CATTTCACTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 6 0.19
28 15 0.48
29 1 0.03
30 9 0.29
ACGTcount: A:0.11, C:0.14, G:0.11, T:0.65
Consensus pattern (28 bp):
TGTTGCTATTTCCTTGCTATTTTTTAAT
Found at i:84846341 original size:22 final size:22
Alignment explanation
Indices: 84846303--84846356 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
84846293 AAATATTTCT
*
84846303 AAAATAATCAGAGTTTAACTAAA
1 AAAATAAT-AGAATTTAACTAAA
*
84846326 AAAATAATAGAATTTAACTAAG
1 AAAATAATAGAATTTAACTAAA
*
84846348 AAAAGAATA
1 AAAATAATA
84846357 TGACACACCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.61, C:0.06, G:0.09, T:0.24
Consensus pattern (22 bp):
AAAATAATAGAATTTAACTAAA
Found at i:84847578 original size:132 final size:132
Alignment explanation
Indices: 84847383--84847903 Score: 586
Period size: 132 Copynumber: 4.0 Consensus size: 132
84847373 TTTAGAGAGT
* * * * *
84847383 ATGAGTGAAATTCTAAAGGAATCTTCGA-CATTTTGGACAAAC-AGGAAATTACAACCCAACACG
1 ATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGA-GAAATTGCAACCCAACACG
* * * * *
84847446 ATAGGGCACGATTCCCCGAATTGCCAAATATCGAATATTACCTTTGTTTTGAAGAGTTTTTAGAA
65 ATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAGTTTTTAGAA
84847511 AAC
130 AAC
* * *
84847514 ATGAGTGAAATCCAAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGA
1 ATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGA
* * *
84847579 TAGGGCACGATTCCGTGAATTGCCAAATATCGAACATCACCTTTG-TTTAAAGAATTTTTTA-AA
66 TAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTTAAAG-AGTTTTTAGAA
84847642 AGAC
130 A-AC
* * * * * *
84847646 ATGGGTGTAATTCTAAAGGGACCTTCGATTACTTTGAGCAAACGAGAAATCGCAACCCAACACGT
1 ATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGA
* * * *
84847711 TAGGGCACGATTCCGTGAATTGTCAAATATCGAACATCGCCCTCGTTTTAAAG-GATTTTTAGAA
66 TAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAG-TTTTTAGAA
*
84847775 GAC
130 AAC
* * * ** * * *
84847778 ATAAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAGTTGCAACCCAGCACGT
1 ATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGA
* * * * * *
84847843 TAGGACACAATTTCGCGAATTGCCAAATATCAAATC-TCACCTTCGTTTTAGAGAATTTTTA
66 TAGGGCACGATTCCGCGAATTGCCAAATATCGAA-CATCACCTTCGTTTTAAAGAGTTTTTA
84847904 AACGAATAAT
Statistics
Matches: 330, Mismatches: 51, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
131 33 0.10
132 286 0.87
133 11 0.03
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (132 bp):
ATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGA
TAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAGTTTTTAGAAA
AC
Found at i:84853989 original size:26 final size:26
Alignment explanation
Indices: 84853953--84854086 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
84853943 ACATGAATTC
84853953 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
84853979 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
84854005 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
84854031 TTATCATG-AACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
84854055 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
84854081 TTATCA
1 TTATCA
84854087 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
24 10 0.10
25 26 0.25
26 66 0.65
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:84854077 original size:50 final size:52
Alignment explanation
Indices: 84853953--84854086 Score: 236
Period size: 50 Copynumber: 2.6 Consensus size: 52
84853943 ACATGAATTC
* *
84853953 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
84854005 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
84854055 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
84854087 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
50 35 0.44
51 13 0.16
52 32 0.40
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:84859822 original size:26 final size:26
Alignment explanation
Indices: 84859786--84859920 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
84859776 ACATGAATTC
84859786 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
84859812 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
84859838 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
84859864 TTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
84859889 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
84859915 TTATCA
1 TTATCA
84859921 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:84859897 original size:51 final size:52
Alignment explanation
Indices: 84859786--84859920 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
84859776 ACATGAATTC
* *
84859786 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
84859838 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
84859889 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
84859921 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 49 0.60
52 32 0.40
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:84861149 original size:55 final size:55
Alignment explanation
Indices: 84861061--84861167 Score: 180
Period size: 55 Copynumber: 1.9 Consensus size: 55
84861051 CTTATCATTT
* *
84861061 TTTTTCATCACACTGTCATTGTTGTATTCAAGGTTGTTGAAACTAGTTCAAAATA
1 TTTTTCATCACACTGTCATTGTTGTATTCAAGGTTGTTAAAACTAGATCAAAATA
84861116 TTTTTCATCACACTGTCATTGTTGTAGTT-AAGGTTGTTAAAACTAGATCAAA
1 TTTTTCATCACACTGTCATTGTTGTA-TTCAAGGTTGTTAAAACTAGATCAAA
84861168 TCGATTGATC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
55 47 0.96
56 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (55 bp):
TTTTTCATCACACTGTCATTGTTGTATTCAAGGTTGTTAAAACTAGATCAAAATA
Found at i:84861468 original size:16 final size:16
Alignment explanation
Indices: 84861447--84861477 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84861437 ATTCTACAAG
*
84861447 AAAATATACAAAATTA
1 AAAATATAAAAAATTA
84861463 AAAATATAAAAAATT
1 AAAATATAAAAAATT
84861478 CAGCACTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATATAAAAAATTA
Found at i:84861881 original size:2 final size:2
Alignment explanation
Indices: 84861874--84861898 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
84861864 CAATCCACCA
84861874 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
84861899 GCCACCACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:84863335 original size:3 final size:3
Alignment explanation
Indices: 84863327--84863358 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
84863317 TAAGGAAACT
*
84863327 TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
84863359 TTGGAGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:84863594 original size:26 final size:27
Alignment explanation
Indices: 84863556--84863608 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
84863546 TTAAATTTTT
* *
84863556 TATTTTTCATTAT-TTCGAAAATAAAA
1 TATTTATCATTATATTAGAAAATAAAA
* *
84863582 TATTTATCTTTATATTATAAAATAAAA
1 TATTTATCATTATATTAGAAAATAAAA
84863609 AAGTGTTTCG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (27 bp):
TATTTATCATTATATTAGAAAATAAAA
Found at i:84871589 original size:17 final size:18
Alignment explanation
Indices: 84871567--84871607 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
84871557 CAAAAAAAAA
* *
84871567 TTAAAAT-TTATATTTTT
1 TTAAAATATAATAATTTT
84871584 TTAAAATATAATAATTTT
1 TTAAAATATAATAATTTT
84871602 TTAAAA
1 TTAAAA
84871608 ATCTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTAAAATATAATAATTTT
Found at i:84872513 original size:23 final size:23
Alignment explanation
Indices: 84872483--84872533 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
84872473 TACTATTTCA
84872483 TATTTAAGCTTTATTCACCAAAG
1 TATTTAAGCTTTATTCACCAAAG
*
84872506 TATTTAAGTTTTATTCACCAAAG
1 TATTTAAGCTTTATTCACCAAAG
84872529 TATTT
1 TATTT
84872534 GAAATATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (23 bp):
TATTTAAGCTTTATTCACCAAAG
Found at i:84873227 original size:42 final size:42
Alignment explanation
Indices: 84873166--84873328 Score: 175
Period size: 42 Copynumber: 3.7 Consensus size: 42
84873156 TCGTTTTCTC
** * *
84873166 GATGCCATAGTTCAACTATGGTCTTACACATCTTCAGATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATAAT
* *
84873208 GATGCCATAGCCCAGCTATGGTCTTACACATATTCATAT-AT
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATAAT
*
84873249 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATTATCACATATT
1 -GATGCCATAGCCCAGCTATGGTCTTACAC---AT--C--T-TCACATAAT
84873300 GATGCCATAGCCCAGCTATGGTCTTACAC
1 GATGCCATAGCCCAGCTATGGTCTTACAC
84873329 GAATCACATA
Statistics
Matches: 103, Mismatches: 8, Indels: 12
0.84 0.07 0.10
Matches are distributed among these distances:
41 2 0.02
42 63 0.61
45 2 0.02
49 1 0.01
50 34 0.33
51 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATAAT
Found at i:84873421 original size:47 final size:47
Alignment explanation
Indices: 84873247--84873418 Score: 188
Period size: 47 Copynumber: 3.6 Consensus size: 47
84873237 ATATTCATAT
84873247 ATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATTATCAC
1 ATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACA-TATCAC
* *
84873295 ATATTGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATATCTC
1 --ATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCAC
* * * * * *
84873343 A-CTGATGTCATATCCCAGATATGGTCTTATACAGTAGT-ATATATCAC
1 ATC-GATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCAC
* *
84873390 ATCGATGCCATATCCCAGATATGGTCTTA
1 ATCGATGCCATAGCCCAGCTATGGTCTTA
84873419 TACGGAAATC
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
46 26 0.24
47 34 0.32
48 8 0.07
49 7 0.07
50 32 0.30
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (47 bp):
ATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCAC
Found at i:84873475 original size:31 final size:31
Alignment explanation
Indices: 84873440--84873588 Score: 230
Period size: 31 Copynumber: 4.8 Consensus size: 31
84873430 CTTGTCACTT
*
84873440 GTAGCCGAAGCTACCACTATTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTAATCAG
* *
84873471 GTAGCC-AGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTAATCAG
84873502 GTAGCC-AGAGCTACCACTTTTCACTAATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTAATCAG
*
84873533 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTAATCAG
84873564 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
84873589 TGTTATTTGT
Statistics
Matches: 109, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
30 1 0.01
31 107 0.98
32 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTAATCAG
Found at i:84873662 original size:50 final size:51
Alignment explanation
Indices: 84873564--84873692 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
84873554 CACTAATCAG
* * *
84873564 GTAGCCGAAGCTACCACTTTTCACTTGTTATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
* * *
84873615 GTAGCCGAAGCTATTACATATCACTT-TCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
84873665 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
84873693 TGCCATGGTC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 46 0.67
51 23 0.33
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:84880381 original size:48 final size:44
Alignment explanation
Indices: 84880275--84880405 Score: 138
Period size: 48 Copynumber: 2.9 Consensus size: 44
84880265 AGTAATAATT
* * *
84880275 TTAAATTTTCAATACTATTCGATATTTTTTTAATTTATGCATAA
1 TTAAAATTTCAATACTATTTGATATTTTTTTCATTTATGCATAA
* *
84880319 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATGTAATTATAA
1 TTAAAATTT-CAATACTATTTGATATTTTTTTCATTTATG----CATAA
** *
84880367 TTAAAATTTCAATACTGCTTGATTTTTTTTTCATTTATG
1 TTAAAATTTCAATACTATTTGATATTTTTTTCATTTATG
84880406 ATGTTTGCAT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
43 5 0.07
44 29 0.40
48 32 0.44
49 6 0.08
ACGTcount: A:0.32, C:0.08, G:0.06, T:0.53
Consensus pattern (44 bp):
TTAAAATTTCAATACTATTTGATATTTTTTTCATTTATGCATAA
Found at i:84887002 original size:20 final size:20
Alignment explanation
Indices: 84886977--84887015 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
84886967 CATGTATGTC
84886977 TACATTTATACTTTTTTATG
1 TACATTTATACTTTTTTATG
*
84886997 TACATTTGTACTTTTTTAT
1 TACATTTATACTTTTTTAT
84887016 CTCCCACAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (20 bp):
TACATTTATACTTTTTTATG
Found at i:84888429 original size:29 final size:30
Alignment explanation
Indices: 84888396--84888456 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
84888386 CAAGTAGCCG
* *
84888396 AAGCTAG-TTAAATCGCACATTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTACTGCCA
84888425 AAGCTAGTTTAAATCGCACACTTACTGCCA
1 AAGCTAGTTTAAATCGCACACTTACTGCCA
84888455 AA
1 AA
84888457 ACTTCCGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTACTGCCA
Found at i:84890908 original size:126 final size:126
Alignment explanation
Indices: 84890683--84891063 Score: 584
Period size: 126 Copynumber: 3.0 Consensus size: 126
84890673 TTATAGCCTC
* * *
84890683 ATTTTTCTACGAACTACTGTAGCAAAAAAGCG-TCTACGTGGGAACTTTTTTCAGAAATTTTGTT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTTC-ACGTGGGAGCTTTTTTCAGAAATTTTGCT
* *
84890747 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAACGTTTACTCAGAATT
65 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
84890809 ATTTTTCTATGAACTACTGTAGCAAAAGAGCGTTCACGTGAGAGCTTTTTTCAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
*
84890874 ACAGTGCATCCTGCTTGAAGTGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * * * *
84890935 ATTTTTCTACGAACTACTATAGCAAAAGAGTGTCCACATGGGAGTTTTTTTCAGAAATTTTGCTT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
* * *
84891000 ACAGTGCATCCTGCTTGAAGCGTTTTTGATACTATTTGTTCAGAAACGTCTACTCAAAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
84891061 ATT
1 ATT
84891064 CTTGCAGAAG
Statistics
Matches: 232, Mismatches: 22, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
126 230 0.99
127 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:84891654 original size:20 final size:20
Alignment explanation
Indices: 84891613--84891700 Score: 116
Period size: 19 Copynumber: 4.7 Consensus size: 20
84891603 ACGATTATGT
84891613 ATCAATTAACCCTAAA-TTA
1 ATCAATTAACCCTAAATTTA
*
84891632 ATCAATTAACCTTAAATTTA
1 ATCAATTAACCCTAAATTTA
84891652 ATCAATTAACCCT-AATTTA
1 ATCAATTAACCCTAAATTTA
*
84891671 ATCAA-T--CCCT-AATTAA
1 ATCAATTAACCCTAAATTTA
84891687 ATCAATTAACCCTA
1 ATCAATTAACCCTA
84891701 TACCTTAAAC
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
16 14 0.23
17 1 0.02
18 1 0.02
19 30 0.49
20 15 0.25
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (20 bp):
ATCAATTAACCCTAAATTTA
Found at i:84891682 original size:16 final size:17
Alignment explanation
Indices: 84891621--84891692 Score: 65
Period size: 20 Copynumber: 4.0 Consensus size: 17
84891611 GTATCAATTA
*
84891621 ACCCTAAATTAATCAATT
1 ACCCTAATTTAATCAA-T
*
84891639 AACCTTAAATTTAATCAATT
1 -ACCCT-AATTTAATCAA-T
84891659 AACCCTAATTTAATCAAT
1 -ACCCTAATTTAATCAAT
*
84891677 -CCCTAATTAAATCAAT
1 ACCCTAATTTAATCAAT
84891693 TAACCCTATA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
16 15 0.31
18 1 0.02
19 15 0.31
20 17 0.35
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (17 bp):
ACCCTAATTTAATCAAT
Found at i:84891697 original size:35 final size:38
Alignment explanation
Indices: 84891613--84891700 Score: 119
Period size: 39 Copynumber: 2.4 Consensus size: 38
84891603 ACGATTATGT
* *
84891613 ATCAATTAACCCTAAATTAATCAATTAACCTTAAATTTA
1 ATCAATTAACCCTAAATTAATCAATT-ACCCTAAATTAA
*
84891652 ATCAATTAACCCTAATTTAATCAA-T-CCCT-AATTAA
1 ATCAATTAACCCTAAATTAATCAATTACCCTAAATTAA
84891687 ATCAATTAACCCTA
1 ATCAATTAACCCTA
84891701 TACCTTAAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
35 19 0.41
36 3 0.07
38 1 0.02
39 23 0.50
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (38 bp):
ATCAATTAACCCTAAATTAATCAATTACCCTAAATTAA
Found at i:84892248 original size:12 final size:12
Alignment explanation
Indices: 84892233--84892264 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
84892223 ATACTCTTTT
84892233 TTATATTAAACA
1 TTATATTAAACA
84892245 TTATATTAAACA
1 TTATATTAAACA
84892257 TTATATTA
1 TTATATTA
84892265 CTAGCAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (12 bp):
TTATATTAAACA
Found at i:84892578 original size:14 final size:14
Alignment explanation
Indices: 84892559--84892585 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84892549 CCTATTAATC
84892559 ATGGTTTATAAATT
1 ATGGTTTATAAATT
84892573 ATGGTTTATAAAT
1 ATGGTTTATAAAT
84892586 AAGATAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (14 bp):
ATGGTTTATAAATT
Found at i:84892801 original size:32 final size:33
Alignment explanation
Indices: 84892749--84892820 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 33
84892739 TTATAAAGTT
* * *
84892749 ATAAATTAATTACTTGAATTTAATAATTCA-TG
1 ATAAATTAATAAATTGAATTTAATAACTCATTG
* *
84892781 ATAAATTAATAAATTTAATTTGATAACTCATTG
1 ATAAATTAATAAATTGAATTTAATAACTCATTG
*
84892814 ATTAATT
1 ATAAATT
84892821 GAATTTGTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 25 0.76
33 8 0.24
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (33 bp):
ATAAATTAATAAATTGAATTTAATAACTCATTG
Found at i:84893247 original size:2 final size:2
Alignment explanation
Indices: 84893240--84893267 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
84893230 AATTGTAGTA
84893240 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84893268 TCAACTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84897472 original size:30 final size:28
Alignment explanation
Indices: 84897417--84897492 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 28
84897407 AATTATAAAA
*
84897417 AATAAAAATCAATAAAATTTATTAAATTTC
1 AATAAAAAT--ATAAAATATATTAAATTTC
*
84897447 AATAAAAATATAAACATATATTTAAATTTT
1 AATAAAAATATAAA-ATATA-TTAAATTTC
*
84897477 ATTAAAAAATATAAAA
1 AAT-AAAAATATAAAA
84897493 ATTGTAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 5 0.12
29 4 0.10
30 20 0.50
31 11 0.28
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (28 bp):
AATAAAAATATAAAATATATTAAATTTC
Found at i:84897520 original size:9 final size:9
Alignment explanation
Indices: 84897404--84897540 Score: 64
Period size: 9 Copynumber: 14.6 Consensus size: 9
84897394 GACATAAAGA
84897404 AAAAATTAT
1 AAAAATTAT
84897413 AAAAA--AT
1 AAAAATTAT
*
84897420 AAAAATCAAT
1 AAAAAT-TAT
*
84897430 AAAATTTAT
1 AAAAATTAT
* *
84897439 TAAATTTCAAT
1 AAAAATT--AT
84897450 AAAAA-TAT
1 AAAAATTAT
*
84897458 AAACATATATTT
1 AAA-A-AT-TAT
**
84897470 AAATTTTATT
1 AAAAATTA-T
*
84897480 AAAAAATAT
1 AAAAATTAT
*
84897489 AAAAATTGT
1 AAAAATTAT
*
84897498 AAAAATATAA
1 AAAAAT-TAT
84897508 AAAAATTAT
1 AAAAATTAT
*
84897517 AAAATTTTAT
1 AAAA-ATTAT
*
84897527 AAAAATCAT
1 AAAAATTAT
84897536 AAAAA
1 AAAAA
84897541 AACTATTAAA
Statistics
Matches: 96, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
7 7 0.07
8 5 0.05
9 43 0.45
10 31 0.32
11 5 0.05
12 5 0.05
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:84897530 original size:19 final size:19
Alignment explanation
Indices: 84897448--84897540 Score: 73
Period size: 19 Copynumber: 4.8 Consensus size: 19
84897438 TTAAATTTCA
84897448 ATAAAAA-TATAAACATATAT
1 ATAAAAATTATAAA-A-ATAT
* **
84897468 TTAAATTTTATTAAAAA-AT
1 ATAAAAATTA-TAAAAATAT
*
84897487 ATAAAAATTGTAAAAATAT
1 ATAAAAATTATAAAAATAT
* * *
84897506 AAAAAAATTATAAAATTTT
1 ATAAAAATTATAAAAATAT
*
84897525 ATAAAAATCATAAAAA
1 ATAAAAATTATAAAAA
84897541 AACTATTAAA
Statistics
Matches: 56, Mismatches: 14, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
18 6 0.11
19 38 0.68
20 5 0.09
21 3 0.05
22 4 0.07
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.33
Consensus pattern (19 bp):
ATAAAAATTATAAAAATAT
Found at i:84897541 original size:48 final size:48
Alignment explanation
Indices: 84897449--84897540 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 48
84897439 TAAATTTCAA
*
84897449 TAAAAATATAAACATATATTTAAATTTTATTAAAAAATATAAAAATTG
1 TAAAAATATAAACATAAATTTAAATTTTATTAAAAAATATAAAAATTG
84897497 TAAAAATATAAA-A-AAATTATAAAATTTTA-T-AAAAATCATAAAAA
1 TAAAAATATAAACATAAATT-T-AAATTTTATTAAAAAAT-ATAAAAA
84897541 AACTATTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
46 10 0.25
47 10 0.25
48 20 0.50
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34
Consensus pattern (48 bp):
TAAAAATATAAACATAAATTTAAATTTTATTAAAAAATATAAAAATTG
Found at i:84897770 original size:10 final size:9
Alignment explanation
Indices: 84897755--84897865 Score: 62
Period size: 10 Copynumber: 11.6 Consensus size: 9
84897745 TTTTACAAAA
84897755 TTTATATTT
1 TTTATATTT
84897764 CTTTATATTT
1 -TTTATATTT
84897774 TTTATAATTT
1 TTTAT-ATTT
84897784 TCTTATGACTTT
1 T-TTAT-A-TTT
* *
84897796 ATAATATTT
1 TTTATATTT
* *
84897805 TATAAACTTT
1 TTTATA-TTT
*
84897815 TTTCTATATT
1 TTTATAT-TT
* *
84897825 TCTATATAT
1 TTTATATTT
84897834 TTTATAATTT
1 TTTAT-ATTT
* *
84897844 TGTATAATT
1 TTTATATTT
84897853 TTTA-ATTT
1 TTTATATTT
84897861 TTTAT
1 TTTAT
84897866 TAAAATTTAA
Statistics
Matches: 75, Mismatches: 19, Indels: 15
0.69 0.17 0.14
Matches are distributed among these distances:
8 7 0.09
9 22 0.29
10 35 0.47
11 8 0.11
12 3 0.04
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTATATTT
Found at i:84897816 original size:41 final size:41
Alignment explanation
Indices: 84897771--84897850 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 41
84897761 TTTCTTTATA
84897771 TTTTTTATA-ATTTTCT-TATGACTTTATAATATTT-TATAAAC
1 TTTTTTATATA-TTTCTATAT-ACTTTATAAT-TTTGTATAAAC
* *
84897812 TTTTTTCTATATTTCTATATATTTTATAATTTTGTATAA
1 TTTTTTATATATTTCTATATACTTTATAATTTTGTATAA
84897851 TTTTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
40 3 0.09
41 27 0.79
42 4 0.12
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (41 bp):
TTTTTTATATATTTCTATATACTTTATAATTTTGTATAAAC
Found at i:84897834 original size:31 final size:29
Alignment explanation
Indices: 84897756--84897844 Score: 83
Period size: 31 Copynumber: 3.0 Consensus size: 29
84897746 TTTACAAAAT
* *
84897756 TTATATTTCTTTATATTTTTTATAATTTTC
1 TTATATTTCTATATATTTTATA-AATTTTC
* *
84897786 TTATGACTT-TATAATATTTTATAAACTTTTT
1 TTAT-ATTTCTAT-ATATTTTATAAA-TTTTC
84897817 TCTATATTTCTATATATTTTAT-AATTTT
1 T-TATATTTCTATATATTTTATAAATTTT
84897845 GTATAATTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
29 4 0.08
30 10 0.20
31 29 0.59
32 6 0.12
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.64
Consensus pattern (29 bp):
TTATATTTCTATATATTTTATAAATTTTC
Found at i:84897836 original size:21 final size:20
Alignment explanation
Indices: 84897755--84897836 Score: 53
Period size: 21 Copynumber: 4.0 Consensus size: 20
84897745 TTTTACAAAA
*
84897755 TTTATATTTCTTTATA-TTT
1 TTTATATTTCTATATATTTT
*
84897774 TTTATAATTTTCT-TATGACTTT
1 TTTAT-A-TTTCTATAT-ATTTT
* * *
84897796 ATAATATTT-TATAAACTTTT
1 TTTATATTTCTATATA-TTTT
84897816 TTCTATATTTCTATATATTTT
1 TT-TATATTTCTATATATTTT
84897837 ATAATTTTGT
Statistics
Matches: 48, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
19 7 0.15
20 13 0.27
21 17 0.35
22 11 0.23
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (20 bp):
TTTATATTTCTATATATTTT
Found at i:84897849 original size:17 final size:17
Alignment explanation
Indices: 84897827--84897861 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
84897817 TCTATATTTC
84897827 TATATATTTTATAATTTTG
1 TATA-ATTTT-TAATTTTG
84897846 TATAATTTTTAATTTT
1 TATAATTTTTAATTTT
84897862 TTATTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 5 0.31
19 4 0.25
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
TATAATTTTTAATTTTG
Found at i:84897862 original size:18 final size:17
Alignment explanation
Indices: 84897827--84897882 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
84897817 TCTATATTTC
*
84897827 TATATATTTTATAATTTTG
1 TATA-ATTTT-TAATTTTT
84897846 TATAATTTTTAATTTTT
1 TATAATTTTTAATTTTT
**
84897863 TATTAAAATTTAATTTTT
1 TA-TAATTTTTAATTTTT
84897881 TA
1 TA
84897883 GAACTTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 9 0.27
18 20 0.61
19 4 0.12
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TATAATTTTTAATTTTT
Found at i:84900016 original size:16 final size:16
Alignment explanation
Indices: 84899979--84900017 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
84899969 ATTTTGCTTA
84899979 AAATTCTTTAAAAATC
1 AAATTCTTTAAAAATC
84899995 ATAATT-TTTAAAAATAC
1 A-AATTCTTTAAAAAT-C
84900012 AAATTC
1 AAATTC
84900018 ATATAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTCTTTAAAAATC
Found at i:84900190 original size:25 final size:24
Alignment explanation
Indices: 84900142--84900190 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
84900132 TAAAAGATCC
***
84900142 AAAATTTTGAAAAAAAATGTATGA
1 AAAATTTTGAAAAAAAAAAAATGA
84900166 AAAATTTTGAAAAAGAAAAAAATGA
1 AAAATTTTGAAAAA-AAAAAAATGA
84900191 CGATTTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.24
Consensus pattern (24 bp):
AAAATTTTGAAAAAAAAAAAATGA
Found at i:84901010 original size:3 final size:3
Alignment explanation
Indices: 84901004--84901048 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
84900994 TACATATATA
84901004 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
84901049 CATAATATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:84904761 original size:3 final size:3
Alignment explanation
Indices: 84904753--84904829 Score: 154
Period size: 3 Copynumber: 25.7 Consensus size: 3
84904743 TATTTAACAT
84904753 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
84904801 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
84904830 TCTTTTACTT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:84904883 original size:24 final size:23
Alignment explanation
Indices: 84904856--84904923 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 23
84904846 TAAGTAAATT
*
84904856 ATTTATTAATTTACATTTGTATTC
1 ATTTATTAA-TTACACTTGTATTC
84904880 ATTTTCATT-ATTACACTTGTATTC
1 A-TTT-ATTAATTACACTTGTATTC
* *
84904904 AATTATTACCTTACACTTGT
1 ATTTATTA-ATTACACTTGT
84904924 CACTCCTATA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 3 0.08
23 2 0.05
24 25 0.68
25 4 0.11
26 3 0.08
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (23 bp):
ATTTATTAATTACACTTGTATTC
Found at i:84906872 original size:22 final size:22
Alignment explanation
Indices: 84906830--84906875 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
84906820 CTAACTAAAC
*
84906830 TCATATATTTTTCTTCTTCAAT
1 TCATATATTTTTATTCTTCAAT
*
84906852 TCATATCTTTTTATTAC-TCAAT
1 TCATATATTTTTATT-CTTCAAT
84906874 TC
1 TC
84906876 CCTACCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.57
Consensus pattern (22 bp):
TCATATATTTTTATTCTTCAAT
Found at i:84919918 original size:33 final size:33
Alignment explanation
Indices: 84919876--84919984 Score: 155
Period size: 33 Copynumber: 3.3 Consensus size: 33
84919866 CGTGTGACAT
* *
84919876 GCCCGTGTGGGCACACATGCTCAACTCGGCCTA
1 GCCCATGTGGGCACACATGCCCAACTCGGCCTA
84919909 GCCCATGTGGGCACACATGCCCAACTCGGCCTA
1 GCCCATGTGGGCACACATGCCCAACTCGGCCTA
* * * *
84919942 GGCCATGTGGGCCCACACGCCCAACTTGGCCTA
1 GCCCATGTGGGCACACATGCCCAACTCGGCCTA
*
84919975 GCCCGTGTGG
1 GCCCATGTGG
84919985 CTCATATTGT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 68 1.00
ACGTcount: A:0.17, C:0.38, G:0.28, T:0.17
Consensus pattern (33 bp):
GCCCATGTGGGCACACATGCCCAACTCGGCCTA
Found at i:84922635 original size:28 final size:28
Alignment explanation
Indices: 84922582--84922635 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
84922572 CAGCAGAGTC
* *
84922582 GACCATATATCATTTAGGTGGTAGAATT
1 GACCATATATCATTTAGGCGGCAGAATT
* *
84922610 GACCATTTATCGTTTAGGCGGCAGAA
1 GACCATATATCATTTAGGCGGCAGAA
84922636 GCAACCAGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (28 bp):
GACCATATATCATTTAGGCGGCAGAATT
Found at i:84940797 original size:40 final size:40
Alignment explanation
Indices: 84940689--84940938 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
84940679 CGGGATTTAA
* * * * *
84940689 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
84940729 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84940769 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84940809 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84940849 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84940889 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84940929 CCGGATATAT
1 CCGGATATAT
84940939 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84948965 original size:40 final size:40
Alignment explanation
Indices: 84948857--84949099 Score: 322
Period size: 40 Copynumber: 6.2 Consensus size: 40
84948847 CGGGATTTAA
* * * * *
84948857 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
84948897 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84948937 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84948977 CCGGATATATCAACTCGCACGAATGCCTTC--G-CTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84949014 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84949054 CC---TATATCAACTCGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84949090 CCGGATATAT
1 CCGGATATAT
84949100 TTCCAATGTT
Statistics
Matches: 180, Mismatches: 15, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
36 11 0.06
37 61 0.34
38 1 0.01
39 7 0.04
40 100 0.56
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84950908 original size:34 final size:34
Alignment explanation
Indices: 84950853--84950923 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
84950843 GTATGCATTT
84950853 CTGATACTGCCACTGTAATGGGCTAAGGCCCACA
1 CTGATACTGCCACTGTAATGGGCTAAGGCCCACA
* * * *
84950887 CTGATATTGCTACTG-ATATGGGCTTAGGCCCAGA
1 CTGATACTGCCACTGTA-ATGGGCTAAGGCCCACA
84950921 CTG
1 CTG
84950924 TTCAGCACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 1 0.03
34 31 0.97
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (34 bp):
CTGATACTGCCACTGTAATGGGCTAAGGCCCACA
Found at i:84961141 original size:32 final size:32
Alignment explanation
Indices: 84961077--84961142 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
84961067 TCGTTTGCAA
* *
84961077 TTTCCATTCATGAATCTAGAGAATTAGAGTAG
1 TTTCCATTCATGAATCTAGACAATTACAGTAG
* * *
84961109 TTTCTATTCATGAATCTAGACAATTTCTGTAG
1 TTTCCATTCATGAATCTAGACAATTACAGTAG
84961141 TT
1 TT
84961143 GGGTTAAGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (32 bp):
TTTCCATTCATGAATCTAGACAATTACAGTAG
Found at i:84962119 original size:18 final size:18
Alignment explanation
Indices: 84962096--84962130 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
84962086 TGGCCCATTA
84962096 CAGTAACAGTAAACAGTG
1 CAGTAACAGTAAACAGTG
84962114 CAGTAACAGTAAACAGT
1 CAGTAACAGTAAACAGT
84962131 ATGCAAGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTG
Found at i:84962526 original size:27 final size:27
Alignment explanation
Indices: 84962496--84962584 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
84962486 GGCGTTTCAA
* *
84962496 TCATTTTACCTCATAAGGGCAAAACAG
1 TCATTTTACCTCATGAGGGAAAAACAG
* *
84962523 TCATTTTACCTTATGAGGGTAAAACAG
1 TCATTTTACCTCATGAGGGAAAAACAG
*
84962550 TCATTTTACCTCATGAGGGAAAAATAG
1 TCATTTTACCTCATGAGGGAAAAACAG
*
84962577 TTATTTTA
1 TCATTTTA
84962585 TCGATTAAGG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
Consensus pattern (27 bp):
TCATTTTACCTCATGAGGGAAAAACAG
Found at i:84968370 original size:3 final size:3
Alignment explanation
Indices: 84968362--84968434 Score: 146
Period size: 3 Copynumber: 24.3 Consensus size: 3
84968352 AGCCTCGCTT
84968362 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
84968410 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
84968435 GAATACCAAG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:84971275 original size:27 final size:27
Alignment explanation
Indices: 84971228--84971358 Score: 120
Period size: 27 Copynumber: 4.9 Consensus size: 27
84971218 CGTCAAGAAA
* *
84971228 GAAATTCCTTTGTGGCGAACTCTGAAG
1 GAAATGCCTTTGTGGCAAACTCTGAAG
* * *
84971255 GACATGCCTTTGTGGCAAACTTTGAAA
1 GAAATGCCTTTGTGGCAAACTCTGAAG
* * * *
84971282 GAAATGCCTTTGTAGCGAACCCTAAAG
1 GAAATGCCTTTGTGGCAAACTCTGAAG
* **
84971309 GAAATTCCTTTGTGGCAAGTTCT-AAG
1 GAAATGCCTTTGTGGCAAACTCTGAAG
* *
84971335 AGAATTACCTTTGTGGCAAACTCT
1 -GAAATGCCTTTGTGGCAAACTCT
84971359 AAATGAAAGG
Statistics
Matches: 81, Mismatches: 22, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
26 3 0.04
27 78 0.96
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (27 bp):
GAAATGCCTTTGTGGCAAACTCTGAAG
Found at i:84971310 original size:54 final size:54
Alignment explanation
Indices: 84971224--84971326 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
84971214 AACACGTCAA
* * * * *
84971224 GAAAGAAATTCCTTTGTGGCGAACTCTGAAGGACATGCCTTTGTGGCAAACTTT
1 GAAAGAAATGCCTTTGTAGCGAACCCTAAAGGAAATGCCTTTGTGGCAAACTTT
*
84971278 GAAAGAAATGCCTTTGTAGCGAACCCTAAAGGAAATTCCTTTGTGGCAA
1 GAAAGAAATGCCTTTGTAGCGAACCCTAAAGGAAATGCCTTTGTGGCAA
84971327 GTTCTAAGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (54 bp):
GAAAGAAATGCCTTTGTAGCGAACCCTAAAGGAAATGCCTTTGTGGCAAACTTT
Found at i:84971346 original size:54 final size:54
Alignment explanation
Indices: 84971226--84971366 Score: 146
Period size: 54 Copynumber: 2.6 Consensus size: 54
84971216 CACGTCAAGA
* *
84971226 AAGA-AATTCCTTTGTGGCGAACTCTGAAGGACATGCCTTTGTGGCAAACTTTG
1 AAGAGAATTCCTTTGTGGCGAACTCTAAAGGAAATGCCTTTGTGGCAAACTTTG
* * * * *
84971279 AA-AGAAATGCCTTTGTAGCGAACCCTAAAGGAAATTCCTTTGTGGC-AAGTTCT-
1 AAGAG-AATTCCTTTGTGGCGAACTCTAAAGGAAATGCCTTTGTGGCAAACTT-TG
* *
84971332 AAGAGAATTACCTTTGTGGCAAACTCTAAATGAAA
1 AAGAGAATT-CCTTTGTGGCGAACTCTAAAGGAAA
84971367 GGCCATTGAG
Statistics
Matches: 71, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
52 1 0.01
53 11 0.15
54 59 0.83
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (54 bp):
AAGAGAATTCCTTTGTGGCGAACTCTAAAGGAAATGCCTTTGTGGCAAACTTTG
Found at i:84971666 original size:34 final size:30
Alignment explanation
Indices: 84971586--84971649 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
84971576 AAGGTTGAAT
84971586 TATGAATGTTCGAAGAAGGCATTTGCCAAC
1 TATGAATGTTCGAAGAAGGCATTTGCCAAC
84971616 TATGAATGTTCGAAGAAGGCATTTGCCAAC
1 TATGAATGTTCGAAGAAGGCATTTGCCAAC
84971646 TATG
1 TATG
84971650 TATGAGTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (30 bp):
TATGAATGTTCGAAGAAGGCATTTGCCAAC
Found at i:84972459 original size:18 final size:18
Alignment explanation
Indices: 84972436--84972483 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
84972426 TTCTCAAAGT
84972436 ATTATTATTATTA-TCATC
1 ATTATTATTATTATTCA-C
84972454 ATTATTATTATTATTCAC
1 ATTATTATTATTATTCAC
*
84972472 ATTATTAATATT
1 ATTATTATTATT
84972484 TTTCTAGTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 25 0.89
19 3 0.11
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTATTATTATTATTCAC
Found at i:84972478 original size:3 final size:3
Alignment explanation
Indices: 84972435--84972468 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
84972425 CTTCTCAAAG
* *
84972435 TAT TAT TAT TAT TAT CAT CAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
84972469 CACATTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:84974070 original size:16 final size:18
Alignment explanation
Indices: 84974035--84974072 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
84974025 ATTCATTTTT
84974035 ATATTCTATTATTGTTAA
1 ATATTCTATTATTGTTAA
*
84974053 ATATT-TATTCTT-TTAA
1 ATATTCTATTATTGTTAA
84974069 ATAT
1 ATAT
84974073 GCAATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (18 bp):
ATATTCTATTATTGTTAA
Found at i:84974347 original size:199 final size:195
Alignment explanation
Indices: 84974112--84974509 Score: 457
Period size: 199 Copynumber: 2.0 Consensus size: 195
84974102 ATAAATTAAT
* * ** *
84974112 GAACTATATTTTAATTCAATTGATTTATTTTATTTTTAATATACTTAAATTAAGAAAAAAATTCA
1 GAACTATATTTTAATTAAATTAAACTAATTTATTTTT--TATACTTAAA-T-AG-AAAAAATTCA
** * *
84974177 TT-TT-TTAATTTAAACAAAAT-TGATT-ATTATT-ATTATTTAAATTTATTAATTTTGAAGTAG
61 TTATTAAAAATTTAAA-AAAATCTAATTAATT-TTCA-GATTTAAATTTATTAATTTTGAAGTAG
* *
84974237 AATAATATAATGTGAATTCTAATTTTAAATATTAATTAATTT-AGTTTAAATAAAATATTAAAAT
123 AATAATATAATGTAAATTCTAATTTTAAATATTAATTAATTTAAGTTTAAAT-AAATAAT-AAAT
84974301 TACTTATTTA
186 TACTTATTTA
* * *
84974311 GAACTATATTTTAATTAAATTAAACTAATTTATTTTTTATACTTAAATAGATAAACTTTATTAAG
1 GAACTATATTTTAATTAAATTAAACTAATTTATTTTTTATACTTAAATAGAAAAAATTCATT-A-
** *
84974376 TTAAAAATTTTGAAAAATCTAATTAAATTTTCAGATTTAAATTTATTAATTTTGAAGTAGATTAA
64 TTAAAAATTTAAAAAAATCTAATT-AATTTTCAGATTTAAATTTATTAATTTTGAAGTAGAATAA
* * *
84974441 TATATTGTAAATTCTATTTTTAAATATTAATTAATTTAAGTTTAAATTAATAATAAATTACTTAT
128 TATAATGTAAATTCTAATTTTAAATATTAATTAATTTAAGTTTAAATAAATAATAAATTACTTAT
84974506 TTA
193 TTA
84974509 G
1 G
84974510 GTAGCATATT
Statistics
Matches: 170, Mismatches: 20, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
194 9 0.05
195 2 0.01
196 1 0.01
197 17 0.10
198 25 0.15
199 103 0.61
200 13 0.08
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.48
Consensus pattern (195 bp):
GAACTATATTTTAATTAAATTAAACTAATTTATTTTTTATACTTAAATAGAAAAAATTCATTATT
AAAAATTTAAAAAAATCTAATTAATTTTCAGATTTAAATTTATTAATTTTGAAGTAGAATAATAT
AATGTAAATTCTAATTTTAAATATTAATTAATTTAAGTTTAAATAAATAATAAATTACTTATTTA
Found at i:84974730 original size:7 final size:6
Alignment explanation
Indices: 84974687--84974735 Score: 53
Period size: 7 Copynumber: 7.5 Consensus size: 6
84974677 GAGTTGCACC
*
84974687 ATATAAG ATATATT ATATAG ATATAG ATATAG ATATATG ATATATG ATA
1 ATAT-AG ATATA-G ATATAG ATATAG ATATAG ATATA-G ATATA-G ATA
84974736 GTTATTTGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 18 0.47
7 20 0.53
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (6 bp):
ATATAG
Found at i:84975276 original size:48 final size:49
Alignment explanation
Indices: 84975184--84975277 Score: 113
Period size: 49 Copynumber: 1.9 Consensus size: 49
84975174 AAAAAATGAT
* * *
84975184 TTTTTGTTTTTTTTTTGTGTCAACATTCTCTTTGTTGGCACTGGTGTAG
1 TTTTTGATTTTTTTTTGTGTCAACATGCTCTTTGTCGGCACTGGTGTAG
*
84975233 TTTTTGATTTTTTTTTGT-T-AGCATGCTCTGGTTGTCGG-ACTGGTG
1 TTTTTGATTTTTTTTTGTGTCAACATGCTCT--TTGTCGGCACTGGTG
84975278 ACCATTTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
47 8 0.21
48 8 0.21
49 23 0.59
ACGTcount: A:0.10, C:0.12, G:0.23, T:0.55
Consensus pattern (49 bp):
TTTTTGATTTTTTTTTGTGTCAACATGCTCTTTGTCGGCACTGGTGTAG
Found at i:84982975 original size:93 final size:88
Alignment explanation
Indices: 84982789--84983271 Score: 357
Period size: 87 Copynumber: 5.4 Consensus size: 88
84982779 ACATGAGCCA
* * * * *
84982789 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-AAAACA-AAATTTGTAAAACAGATTA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGCAAACATAAA-TTG-AAAAAAAATAAT
** *
84982851 TGAAAATACCTCGATATGTGACCCG
64 TGAAAATACCTCGGCATGTGACCTG
* * *
84982876 AAGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGCAAAGCATAAATTAAAAAAAAAACATC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGCAAA-CATAAATT--GAAAAAAA-AT-
* *
84982941 AATTGAAAATACCTCGGCATGTGGCTTG
61 AATTGAAAATACCTCGGCATGTGACCTG
84982969 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAA-AA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-CAAACATAAATTGAAAAAAAATAA
* *
84983033 TTGAAAATACCTCAGC--GTGTCCTG
63 TTGAAAATACCTCGGCATGTGACCTG
* * *
84983057 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTGAAAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-G-CAAACATAAA-TTGAAAA-AAAA
* * * *
84983121 T--TTGAAAATACCTCAGCGTGTGA-GTCA
60 TAATTGAAAATACCTCGGCATGTGACCT-G
* * * * * *
84983148 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGA-A
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGCAA-ACATAAATTGAA-AAAAAATA
* * * * *
84983212 ATGGAAAACACCTC--AACGT--CTTG
62 ATTGAAAATACCTCGGCATGTGACCTG
* *
84983235 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
84983272 TTTGAAAGAC
Statistics
Matches: 332, Mismatches: 40, Indels: 50
0.79 0.09 0.12
Matches are distributed among these distances:
85 5 0.02
87 64 0.19
88 51 0.15
89 39 0.12
90 39 0.12
91 57 0.17
92 2 0.01
93 57 0.17
95 14 0.04
96 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGCAAACATAAATTGAAAAAAAATAATTG
AAAATACCTCGGCATGTGACCTG
Found at i:84983117 original size:13 final size:13
Alignment explanation
Indices: 84983099--84983128 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
84983089 TTTTTTTGGA
84983099 AAAACAAAATTTG
1 AAAACAAAATTTG
*
84983112 AAAACAGAATTTG
1 AAAACAAAATTTG
84983125 AAAA
1 AAAA
84983129 TACCTCAGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.63, C:0.07, G:0.10, T:0.20
Consensus pattern (13 bp):
AAAACAAAATTTG
Found at i:84983328 original size:76 final size:74
Alignment explanation
Indices: 84983206--84983347 Score: 221
Period size: 76 Copynumber: 1.9 Consensus size: 74
84983196 AAATTGAAGA
* *
84983206 ACAGAAATGGAAAACACCTCAACGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 ACAGAAATGAAAAACACCTCAACGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
84983271 TTTTGAAAG
66 TTTTGAAAG
* * *
84983280 ACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATGAAAAACACCTCAAC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
84983345 TTT
64 TTT
84983348 GAAACTTAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 20 0.33
76 41 0.67
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (74 bp):
ACAGAAATGAAAAACACCTCAACGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
TTTTGAAAG
Found at i:84983418 original size:87 final size:81
Alignment explanation
Indices: 84983387--84983851 Score: 237
Period size: 91 Copynumber: 5.6 Consensus size: 81
84983377 AATGCCTCGA
84983387 TATGTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGA
1 TATGTGATCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAATATAAATTGA
84983451 AAAAAAAAATACCTCAG
65 AAAAAAAAATACCTCAG
* * * *
84983468 TGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTG
1 TATGTGATCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ATATAAATTG
*
84983532 ------AAAATAGCTCAG
64 AAAAAAAAAATACCTCAG
*** * * * ** *
84983544 CGCGTGAGC-CAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTGAAAGGCAGAAATT
1 TATGTGATCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ATATAAATT
*
84983608 GAAAAACGAAAATTGAAAATACCTCGG
63 G---AA--AAAA---AAAATACCTCAG
** * * *
84983635 CGTGTGATCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATT
1 TATGTGATCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ATATAAATT
*
84983699 G------AAAATAGCTCAG
63 GAAAAAAAAAATACCTCAG
*** * * * ** *
84983712 CGCGTGAGC-CAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTTGAAAGGCAGAAAT
1 TATGTGATCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAA-ATATAAAT
*
84983776 TGAAAAATGGAAATTGAAAATACCTCGG
62 TG--AAA---AAA---AAAATACCTCAG
** *
84983804 CGTGTGATCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TATGTGATCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
84983852 TTGAAAGACA
Statistics
Matches: 312, Mismatches: 35, Indels: 66
0.76 0.08 0.16
Matches are distributed among these distances:
75 2 0.01
76 45 0.14
77 67 0.21
78 21 0.07
81 39 0.12
82 18 0.06
89 5 0.02
91 68 0.22
92 47 0.15
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (81 bp):
TATGTGATCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATATAAATTGAA
AAAAAAAATACCTCAG
Found at i:84983568 original size:244 final size:240
Alignment explanation
Indices: 84983239--84984267 Score: 647
Period size: 244 Copynumber: 4.1 Consensus size: 240
84983229 GTCTTGAGGT
* *
84983239 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAAGACAGAAATTAAAAATACCTCAACG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACG
* ** * ** * *
84983304 TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-CTTAACTTGAAAAGC
65 TGGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAAGCAGAAATTGAAAAAC
** * *
84983367 -AGATTTTGAAAATGCCTCGATATGTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
130 GA-AAATTGAAAATACCTCGACATGTGATCT-AAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * * *
84983430 -TTTTTGAAAAATATAAATTGAAAAAAAAAATACCTCAGTGTGTGATCTGAA-GC
193 TTTTTTGAAAAACAGAAATTG------AAAATACCTCAGCGCGTGAGC-CAAGGC
* *
84983483 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA--AC
*
84983547 GTGAGC-CAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTGAAAGGCAGAAATTGAA
64 GTG-GCTCAAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTTTGAAA-GCAGAAATTGAA
* * *
84983611 AAACGAAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
126 AAACGAAAATTGAAAATACCTCGACATGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
84983676 GATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGC
191 GA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGC
* * *
84983727 TCAACTCACCTCTCGTAATATGAGTCGATTTTTTTTGAAAGGCAGAAATTGAAAAATGGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT--------GAAA--G--ACA--GAAATTG
** * * *
84983792 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT----
51 AAAATACCTCAACGTG-GCTC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAA
* * * ** * * *
84983853 --TGAAA--G--ACA-G-AAATTGAAAATAGCTC-AGCGCGTGAGCCAAGGCTTAACTCACCTCT
114 GCAGAAATTGAAAAACGAAAATTGAAAATACCTCGA-CATGTGATCTAAGGCTCAACTCACCTCT
* * *
84983909 CGCAATATGAGTCGATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGC
178 CGCAATATGAGTTGA----TTTT------------TTGAAAAACAGAAATTGAAAATACCTCAGC
* *
84983974 GTGTGA-CCTGAGGC
227 GCGTGAGCC-AAGGC
* * * * * * *
84983988 TCAACTCGCCGCTTGCAATACGAGTTGATTTTTTTTTTGACA-ACAGAAATTGAAATTACCTCAG
1 TCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAGACAGAAATTGAAAATACCTCAA
* * * *
84984052 CGTGTC-CTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATT
63 CGTGGCTC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGA---TTTTTTGAAA-GCAGAAA-T
* * * * * **
84984116 TGAAAAACGAAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCGCCTCTAGCAATACA
122 TGAAAAACGAAAATTGAAAATACCTCGACATGTGATCTAAGGCTCAACTCACCTCTCGCAATATG
* * * * *
84984181 AGTTGATTTTTTTG-ACAACAGAAATTGAAATTACCTCA--GCATG-TCCTGAGGC
187 AGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGC
*
84984233 TCAACTCACCTCTCGTAATATGAGTTGATTTTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
84984268 TAAAATACCT
Statistics
Matches: 626, Mismatches: 91, Indels: 138
0.73 0.11 0.16
Matches are distributed among these distances:
242 37 0.06
243 2 0.00
244 106 0.17
245 35 0.06
246 101 0.16
247 21 0.03
248 88 0.14
249 14 0.02
250 20 0.03
252 4 0.01
254 4 0.01
255 3 0.00
256 5 0.01
258 8 0.01
259 8 0.01
260 53 0.08
261 59 0.09
262 1 0.00
263 56 0.09
264 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (240 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGT
GGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAAGCAGAAATTGAAAAACG
AAAATTGAAAATACCTCGACATGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGC
Found at i:84983581 original size:76 final size:77
Alignment explanation
Indices: 84983390--84983612 Score: 256
Period size: 76 Copynumber: 2.9 Consensus size: 77
84983380 GCCTCGATAT
* * *
84983390 GTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTG---
* *
84983453 AAAAAAATACCTCAGTGT
63 ---AAAATACCTCAGCGC
* *
84983471 GTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAA
*
84983535 ATAGCTCAGCGC
66 ATACCTCAGCGC
* * *
84983547 GTGAGC-CAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTGAAAGGCAGAAATTGAA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTGAA
84983611 AA
65 AA
84983613 ACGAAAATTG
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
75 2 0.02
76 45 0.36
77 24 0.19
81 34 0.27
82 21 0.17
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (77 bp):
GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAA
ATACCTCAGCGC
Found at i:84983670 original size:91 final size:91
Alignment explanation
Indices: 84983526--84983703 Score: 275
Period size: 91 Copynumber: 2.0 Consensus size: 91
84983516 TGAAAGACAG
* *
84983526 AAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
*
84983591 TTTGAAAGGCAGAAATTGAAAAACGA
66 TTTGAAAGACAGAAATTGAAAAACGA
* * * ** *
84983617 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
84983682 TTTGAAAGACAGAAATTGAAAA
66 TTTGAAAGACAGAAATTGAAAA
84983704 TAGCTCAGCG
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
91 78 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (91 bp):
AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
TTTGAAAGACAGAAATTGAAAAACGA
Found at i:84983733 original size:77 final size:78
Alignment explanation
Indices: 84983617--84983781 Score: 242
Period size: 77 Copynumber: 2.1 Consensus size: 78
84983607 TGAAAAACGA
* * * ** *
84983617 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
84983681 TTTTGAAAGACAG
66 TTTTGAAAGACAG
* *
84983694 AAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
*
84983759 TTTTGAAAGGCAG
66 TTTTGAAAGACAG
84983772 AAATTGAAAA
1 AAATTGAAAA
84983782 ATGGAAATTG
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
77 53 0.68
78 25 0.32
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (78 bp):
AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
TTTTGAAAGACAG
Found at i:84983840 original size:92 final size:91
Alignment explanation
Indices: 84983693--84983872 Score: 270
Period size: 92 Copynumber: 2.0 Consensus size: 91
84983683 TTGAAAGACA
* *
84983693 GAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTT
1 GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TT
*
84983758 TTTTTGAAAGGCAGAAATTGAAAAATG
65 TTTTTGAAAGACAGAAATTGAAAAATG
* * * ** *
84983785 GAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
84983850 TTTTGAAAGACAGAAATTGAAAA
66 TTTTGAAAGACAGAAATTGAAAA
84983873 TAGCTCAGCG
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
91 25 0.32
92 54 0.68
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (91 bp):
GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
TTTTGAAAGACAGAAATTGAAAAATG
Found at i:84983841 original size:169 final size:169
Alignment explanation
Indices: 84983456--84984268 Score: 1187
Period size: 169 Copynumber: 4.8 Consensus size: 169
84983446 ATTGAAAAAA
* * *
84983456 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
84983520 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTC
66 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTC
84983585 GA-TTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
131 GATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
84983623 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
84983688 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTC
66 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTC
* *
84983753 GATTTTTTTTGAAAGGCAGAAATTGAAAAATGGAAATTG
131 GATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
84983792 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* *
84983857 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTTAACTCACCTCTCGCAATATGAGTC
66 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTC
*
84983922 GATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
131 GATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
* * * * *
84983961 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTTGCAATACGAGTTGATTTTTTTTTT
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTT
* * * * * **
84984026 GACA-ACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCACAATATG
63 GAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGTAATATG
*
84984087 AGTTGATTTTTTTTTGAAAGGCAGAAATTTGAAAAACGAAAATTG
127 AGTCGA-TTTTTTTTGAAAGGCAGAAA-TTGAAAAACGAAAATTG
* * * * ** *
84984132 AAAATACCTCGACGTGTGACCTGAGGCTCAACTCGCCTCTAGCAATACAAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * * *
84984197 A-ACAGAAATTGAAATTACCTCA--GCATG-TCCTGAGGCTCAACTCACCTCTCGTAATATGAGT
66 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGTAATATGAGT
*
84984258 TGATTTTTTTT
130 CGATTTTTTTT
84984269 AAAATACCTC
Statistics
Matches: 609, Mismatches: 29, Indels: 16
0.93 0.04 0.02
Matches are distributed among these distances:
167 60 0.10
168 149 0.24
169 284 0.47
170 20 0.03
171 86 0.14
172 10 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (169 bp):
AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTC
GATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
Found at i:84983902 original size:77 final size:78
Alignment explanation
Indices: 84983785--84983950 Score: 244
Period size: 77 Copynumber: 2.1 Consensus size: 78
84983775 TTGAAAAATG
* * * ** *
84983785 GAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
84983849 TTTTTGAAAGACA
66 TTTTTGAAAGACA
* *
84983862 GAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTTAACTCACCTCTCGCAATATGAGTCGATTT
1 GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
*
84983927 TTTTTGAAAGGCA
66 TTTTTGAAAGACA
84983940 GAAATTGAAAA
1 GAAATTGAAAA
84983951 ACGGAAATTG
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
77 54 0.68
78 25 0.32
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (78 bp):
GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
TTTTTGAAAGACA
Found at i:84984018 original size:92 final size:92
Alignment explanation
Indices: 84983852--84984023 Score: 220
Period size: 92 Copynumber: 1.9 Consensus size: 92
84983842 GTTGATTTTT
* * * * *
84983852 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTTAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAC
84983917 GAGTCGATTTTTTTTGAAAGGCAGAAA
66 GAGTCGATTTTTTTTGAAAGGCAGAAA
* * * * * *
84983944 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTTGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCGCTCGCAATA
*
84984008 CGAGTTGATTTTTTTT
65 CGAGTCGATTTTTTTT
84984024 TTGACAACAG
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
91 2 0.03
92 65 0.97
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (92 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAC
GAGTCGATTTTTTTTGAAAGGCAGAAA
Found at i:84984115 original size:77 final size:78
Alignment explanation
Indices: 84983954--84984101 Score: 217
Period size: 77 Copynumber: 1.9 Consensus size: 78
84983944 TTGAAAAACG
* * **
84983954 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTTGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTT
84984019 TTTTTTTGACAACA
65 TTTTTTTGACAACA
* * *
84984033 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
84984097 TTTTT
66 TTTTT
84984102 GAAAGGCAGA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
77 40 0.65
79 22 0.35
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (78 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
TTTTTTGACAACA
Found at i:84984307 original size:61 final size:61
Alignment explanation
Indices: 84984212--84984326 Score: 212
Period size: 61 Copynumber: 1.9 Consensus size: 61
84984202 AAATTGAAAT
* *
84984212 TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTTAAAA
1 TACCTCAGCACGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
84984273 TACCTCAGCACGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TACCTCAGCACGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
84984327 GAAACATACG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (61 bp):
TACCTCAGCACGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
Found at i:84984378 original size:137 final size:135
Alignment explanation
Indices: 84984151--84984402 Score: 353
Period size: 137 Copynumber: 1.9 Consensus size: 135
84984141 CGACGTGTGA
* *** *
84984151 CCTGAGGCTCAACTCGCCTCTAGCAATACAAGTTGATTTTTTTGACAACAGAAATTGAAATTACC
1 CCTGAGGCTCAACTCACCTCTAGCAATACAAGTTGATTTTTGAAACAACAAAAATTGAAATTACC
* * * *
84984216 TCAGCATGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTTAAAATACCTCAG
66 TCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTTTTAAAATACCTCAG
84984281 CACGT
131 CACGT
* **
84984286 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACGAAAAATTGACAA-T
1 CCTGAGGCTCAACTCACCTCTAGCAATACAAGTTGATTTTTGAAACA-AC-AAAAATTGA-AATT
*
84984350 ACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTT
63 ACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTT
84984403 GAAATAAAAC
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
135 40 0.40
136 2 0.02
137 57 0.56
138 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (135 bp):
CCTGAGGCTCAACTCACCTCTAGCAATACAAGTTGATTTTTGAAACAACAAAAATTGAAATTACC
TCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTTTTAAAATACCTCAG
CACGT
Found at i:84992159 original size:25 final size:25
Alignment explanation
Indices: 84992130--84992177 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84992120 TTATAATATG
* * *
84992130 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
84992155 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
84992178 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:84992246 original size:20 final size:20
Alignment explanation
Indices: 84992221--84992279 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
84992211 TAAATATGGT
84992221 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
84992241 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
84992261 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
84992280 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:84992385 original size:23 final size:23
Alignment explanation
Indices: 84992330--84992448 Score: 152
Period size: 24 Copynumber: 5.0 Consensus size: 23
84992320 GAGGAAGTGA
84992330 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
84992353 CGAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
84992377 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
84992401 GAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
84992424 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
84992448 A
1 A
84992449 TGATAAAGCA
Statistics
Matches: 86, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
23 39 0.45
24 40 0.47
25 7 0.08
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:84992399 original size:47 final size:47
Alignment explanation
Indices: 84992330--84992447 Score: 177
Period size: 47 Copynumber: 2.5 Consensus size: 47
84992320 GAGGAAGTGA
84992330 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGCCCCAGTTATT
*
84992377 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGCCCCAGTTATT
*
84992424 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
84992448 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
46 11 0.17
47 44 0.67
48 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGCCCCAGTTATT
Found at i:84992433 original size:24 final size:24
Alignment explanation
Indices: 84992330--84992447 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
84992320 GAGGAAGTGA
*
84992330 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
84992354 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
84992377 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
84992401 GAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
84992424 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
84992448 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
23 39 0.46
24 37 0.44
25 8 0.10
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:84992690 original size:38 final size:38
Alignment explanation
Indices: 84992639--84992732 Score: 161
Period size: 38 Copynumber: 2.4 Consensus size: 38
84992629 CGTTTACAGT
84992639 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
84992677 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
84992715 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
84992733 GCATGATTGA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
38 40 0.75
39 13 0.25
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:85000556 original size:20 final size:20
Alignment explanation
Indices: 85000531--85000589 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
85000521 TAAATATGGT
85000531 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
85000551 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
85000571 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
85000590 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:85000709 original size:47 final size:48
Alignment explanation
Indices: 85000640--85000758 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
85000630 GAGGAAGTGA
85000640 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGGCCCCAGTTATT
*
85000687 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
*
85000735 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85000759 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 1 0.02
47 43 0.65
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:85000734 original size:24 final size:24
Alignment explanation
Indices: 85000640--85000758 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
85000630 GAGGAAGTGA
*
85000640 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
85000664 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
85000687 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
85000711 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
85000735 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85000759 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.26
24 51 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:85001001 original size:38 final size:38
Alignment explanation
Indices: 85000950--85001043 Score: 161
Period size: 38 Copynumber: 2.4 Consensus size: 38
85000940 CGTTTACAGT
85000950 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
85000988 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
85001026 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
85001044 GCATGATTGA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
38 40 0.75
39 13 0.25
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:85003061 original size:25 final size:25
Alignment explanation
Indices: 85003033--85003100 Score: 73
Period size: 30 Copynumber: 2.5 Consensus size: 25
85003023 TATTTTGGTA
85003033 TTTATTTTATTTTCGAATTTTATTT
1 TTTATTTTATTTTCGAATTTTATTT
*
85003058 TTTAAAATATATTATTTTCGTATTTTATTT
1 TTT---AT-T-TTATTTTCGAATTTTATTT
*
85003088 TTTATATTATTTT
1 TTTATTTTATTTT
85003101 AGCACATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
25 10 0.28
27 2 0.06
28 2 0.06
29 1 0.03
30 21 0.58
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (25 bp):
TTTATTTTATTTTCGAATTTTATTT
Found at i:85003192 original size:150 final size:148
Alignment explanation
Indices: 85003033--85003359 Score: 534
Period size: 150 Copynumber: 2.2 Consensus size: 148
85003023 TATTTTGGTA
*
85003033 TTTATTTTATTTTCGAATTTTATTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTTATATTA
1 TTTATTTTATTTTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATTA
*
85003097 TTTTAGCACATAATGTTTCAAATGTATTGTTTTTA-TATTTTTTATATTAATTTAGTAAAAAAAC
66 TTTTAGCACATAATGTTTCAAATGTATT-ATTTTAGT-TTTTTTATATTAATTTAGT-AAAAAAC
* *
85003161 TCTGATTTTGGCCGTTTGTTTT
128 TCTAATTTTGGCCGTTT-ATTT
85003183 TTTATTTTATTTTC-AGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATT
1 TTTATTTTATTTTCGA-ATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATT
*
85003247 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAACTC
65 ATTTTAGCACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAACTC
85003312 TAATTTTGGCCGTTTATTT
130 TAATTTTGGCCGTTTATTT
*
85003331 TTTATTTTATTTTCGGATTTTATTTTTTA
1 TTTATTTTATTTTCGAATTTTATTTTTTA
85003360 TTATTGTTTT
Statistics
Matches: 167, Mismatches: 6, Indels: 10
0.91 0.03 0.05
Matches are distributed among these distances:
148 30 0.18
149 24 0.14
150 73 0.44
151 40 0.24
ACGTcount: A:0.27, C:0.06, G:0.07, T:0.60
Consensus pattern (148 bp):
TTTATTTTATTTTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATTA
TTTTAGCACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAACTCT
AATTTTGGCCGTTTATTT
Found at i:85003354 original size:118 final size:116
Alignment explanation
Indices: 85003220--85003473 Score: 395
Period size: 118 Copynumber: 2.2 Consensus size: 116
85003210 TAAAATATAC
*
85003220 TATTTTCGTATTTTATTTTTTTA-TATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT
1 TATTTTCGGATTTTATTTTTTTATTATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT
* * * * *
85003284 TTTTTTATATTAATTTAGTAAAAAACTCTAATTTTGGCCGTTTATTTTTTATTT
66 TTTTTTATATTAATTTAGAAAAAAACTATAATTTTGACC-CTT-TTTTAT-TTT
*
85003338 TATTTTCGGATTTTA-TTTTTTATTATTGTTTTAGTACATAATGTTTCAAATGTATTATTTTAGT
1 TATTTTCGGATTTTATTTTTTTATTATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT
*
85003402 TTTTTTATATTAATTTAGAAAAAAACTATGATTTTGACCCTTTTTTATTTT
66 TTTTTTATATTAATTTAGAAAAAAACTATAATTTTGACCCTTTTTTATTTT
85003453 TATTTTCGGATTTTATTTTTT
1 TATTTTCGGATTTTATTTTTT
85003474 AAAATATACT
Statistics
Matches: 126, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
115 18 0.14
116 10 0.08
117 9 0.07
118 89 0.71
ACGTcount: A:0.26, C:0.06, G:0.08, T:0.59
Consensus pattern (116 bp):
TATTTTCGGATTTTATTTTTTTATTATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT
TTTTTTATATTAATTTAGAAAAAAACTATAATTTTGACCCTTTTTTATTTT
Found at i:85003515 original size:145 final size:144
Alignment explanation
Indices: 85003338--85003898 Score: 871
Period size: 143 Copynumber: 3.9 Consensus size: 144
85003328 TTTTTTATTT
* *
85003338 TATTTTCGGATTTTATTTTTTATTATTGTTTTAGTACATAATGTTTCAAATGTATTATTTTAGTT
1 TATTTTCGTATTTTATTTTTTA-TATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTT
* * *
85003403 TTTTTATATTAATTTAGAAAAAAACTATGATTTTGACCCTTTTTTATTTTTATTTTCGGATTTTA
65 TTTTTATATTAATTTAGTAAAAAACTCTGATTTTGGCCCTTTTTTATTTTTATTTTCGGATTTTA
85003468 TTTTTTAAAATATAC
130 TTTTTTAAAATATAC
85003483 TATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATGTTTC--ATGTATTATTTTAGTT
1 TATTTTCGTATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTT
* * * * *
85003546 TTTTTATATTAATTTAGTAAAAATCTGTGATTTTGGCCATTTTTTAATTTTATTTTTGGATTTTA
65 TTTTTATATTAATTTAGTAAAAAACTCTGATTTTGGCCCTTTTTTATTTTTATTTTCGGATTTTA
85003611 TTTTTTAAAATATAC
130 TTTTTTAAAATATAC
*
85003626 TATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTT
1 TATTTTCGTATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAG-T
* * *
85003691 TTTTTTATATTAATTTAGTAAAAAACTCTGATTTTGGCCGTTTATTTTTATTTTATTTTTGGATT
64 TTTTTTATATTAATTTAGTAAAAAACTCTGATTTTGGCCCTTT-TTTAT-TTTTATTTTCGGATT
*
85003756 TTATTTTTCAAAATATAC
127 TTATTTTTTAAAATATAC
* *
85003774 TATTTTCGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCATATGTATTATTTTAGTAT
1 TATTTTCGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTT
*
85003839 ATTTATATTAATTTAGT-AAAAACTCTGATTTTGG-CCTTTTTTA-TTTTATTTTCGGATTTT
66 TTTTATATTAATTTAGTAAAAAACTCTGATTTTGGCCCTTTTTTATTTTTATTTTCGGATTTT
85003899 TTAAAATATT
Statistics
Matches: 387, Mismatches: 23, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
141 16 0.04
143 138 0.36
144 4 0.01
145 68 0.18
146 66 0.17
147 48 0.12
148 47 0.12
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (144 bp):
TATTTTCGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTT
TTTTATATTAATTTAGTAAAAAACTCTGATTTTGGCCCTTTTTTATTTTTATTTTCGGATTTTAT
TTTTTAAAATATAC
Found at i:85003599 original size:263 final size:266
Alignment explanation
Indices: 85003069--85003617 Score: 857
Period size: 263 Copynumber: 2.1 Consensus size: 266
85003059 TTAAAATATA
* *
85003069 TTATTTTCGTATTTTATTTTTTATATTATTTTAGCACATAATGTTTCAAATGTATTGTTTTTATA
1 TTATTTTCGGATTTTATTTTTTATATTATTTTAGCACATAATGTTTCAAATGTATTGATTTTATA
* * * *
85003134 TTTTTTATATTAATTTAGTAAAAAAACTCTGATTTTGGCCGTTTGTTTTTTTATTTTATTTTCAG
66 TTTTTTATATTAATTTAGTAAAAAAACTATGATTTTGACCG-CTGTTTTTATATTTTATTTTCAG
85003199 ATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATGT
130 ATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATGT
*
85003264 TTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAACTCTAATTTTGGCCGTTTAT
195 TTC-AATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAACTCTAATTTTGGCCATTTAT
85003329 TTTTTATT
259 TTTTTATT
* *
85003337 TTATTTTCGGATTTTATTTTTTATTATTGTTTTAGTACATAATGTTTCAAATGTATT-ATTTTAG
1 TTATTTTCGGATTTTATTTTTTA-TATTATTTTAGCACATAATGTTTCAAATGTATTGATTTTA-
*
85003401 T-TTTTTTATATTAATTTAG-AAAAAAACTATGATTTTGACC-CT-TTTTTAT-TTTTATTTTCG
64 TATTTTTTATATTAATTTAGTAAAAAAACTATGATTTTGACCGCTGTTTTTATATTTTATTTTCA
85003461 GATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATG
129 GATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATG
* * *
85003526 TTTC-ATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAATCTGTGATTTTGGCCA--T-T
194 TTTCAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAACTCTAATTTTGGCCATTTAT
*
85003587 TTTTAATT
259 TTTTTATT
*
85003595 TTATTTTTGGATTTTATTTTTTA
1 TTATTTTCGGATTTTATTTTTTA
85003618 AAATATACTA
Statistics
Matches: 264, Mismatches: 15, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
258 30 0.11
259 1 0.00
261 51 0.19
263 79 0.30
264 6 0.02
265 1 0.00
267 19 0.07
268 45 0.17
269 32 0.12
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (266 bp):
TTATTTTCGGATTTTATTTTTTATATTATTTTAGCACATAATGTTTCAAATGTATTGATTTTATA
TTTTTTATATTAATTTAGTAAAAAAACTATGATTTTGACCGCTGTTTTTATATTTTATTTTCAGA
TTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATGTT
TCAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAACTCTAATTTTGGCCATTTATTT
TTTATT
Found at i:85003602 original size:13 final size:13
Alignment explanation
Indices: 85003584--85003618 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
85003574 GATTTTGGCC
85003584 ATTTTTTAATTTT
1 ATTTTTTAATTTT
**
85003597 ATTTTTGGATTTT
1 ATTTTTTAATTTT
85003610 ATTTTTTAA
1 ATTTTTTAA
85003619 AATATACTAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (13 bp):
ATTTTTTAATTTT
Found at i:85003911 original size:13 final size:13
Alignment explanation
Indices: 85003895--85003920 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85003885 TATTTTCGGA
85003895 TTTTTTAAAATAT
1 TTTTTTAAAATAT
85003908 TTTTTTAAAATAT
1 TTTTTTAAAATAT
85003921 ACTATTAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTTTAAAATAT
Found at i:85004397 original size:18 final size:18
Alignment explanation
Indices: 85004363--85004413 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
85004353 TTCCCTCCCT
*
85004363 CTTCTTCTTCTTC-TTCTC
1 CTTC-TCTTTTTCTTTCTC
85004381 CTTCTCTTTTTCTTTCTC
1 CTTCTCTTTTTCTTTCTC
* *
85004399 TTTTTCTTTTTCTTT
1 CTTCTCTTTTTCTTT
85004414 TTTCTTCCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 7 0.24
18 22 0.76
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
CTTCTCTTTTTCTTTCTC
Done.