Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 282 of 335
Found at i:85307190 original size:145 final size:141
Alignment explanation
Indices: 85307038--85307373 Score: 564
Period size: 145 Copynumber: 2.4 Consensus size: 141
85307028 TTAGGATTTT
85307038 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
85307103 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTGAT
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG--CATATAT--GAGAT
85307168 AAGGCCGAATGGCCA
127 AAGGCCGAATGGCCA
85307183 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
85307248 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
85307313 CCGAATGGCCA
131 CCGAATGGCCA
** * * *
85307324 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
85307374 CGAAATGTGT
Statistics
Matches: 183, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
141 64 0.35
143 6 0.03
145 113 0.62
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
CCGAATGGCCA
Found at i:85307210 original size:23 final size:23
Alignment explanation
Indices: 85307183--85307257 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
85307173 CGAATGGCCA
85307183 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
85307206 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
85307230 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
85307253 ATGTG
1 ATGTG
85307258 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:85307483 original size:46 final size:46
Alignment explanation
Indices: 85307347--85307483 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
85307337 GAACATGTAT
* *
85307347 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
85307393 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
85307439 ATATGTGGTAAAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
85307484 TGTATATATA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:85310434 original size:13 final size:13
Alignment explanation
Indices: 85310412--85310444 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
85310402 AATGGTTTGT
85310412 TTAT-TAAACTAA
1 TTATCTAAACTAA
85310424 TTATCTAAACTAA
1 TTATCTAAACTAA
*
85310437 TTAACTAA
1 TTATCTAA
85310445 TTTAACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:85313262 original size:17 final size:16
Alignment explanation
Indices: 85313235--85313279 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 16
85313225 AATAAAATTG
*
85313235 AAATGAAATAAAAGAA
1 AAATAAAATAAAAGAA
*
85313251 AAAGTAAAATAAAAGTA
1 AAA-TAAAATAAAAGAA
85313268 AAATAAAATAAA
1 AAATAAAATAAA
85313280 TAAAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 12 0.46
17 14 0.54
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (16 bp):
AAATAAAATAAAAGAA
Found at i:85313266 original size:11 final size:11
Alignment explanation
Indices: 85313250--85313290 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
85313240 AAATAAAAGA
85313250 AAAAGTAAAAT
1 AAAAGTAAAAT
85313261 AAAAGTAAAAT
1 AAAAGTAAAAT
85313272 AAAA-T-AAAT
1 AAAAGTAAAAT
*
85313281 AAAATTAAAA
1 AAAAGTAAAA
85313291 AATATAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
10 2 0.07
11 18 0.64
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.20
Consensus pattern (11 bp):
AAAAGTAAAAT
Found at i:85313269 original size:6 final size:5
Alignment explanation
Indices: 85313215--85313305 Score: 64
Period size: 5 Copynumber: 17.8 Consensus size: 5
85313205 TATGTCTTTC
* * *
85313215 AAAAT AAAAT --AAT AAAATT GAAAT GAAAT AAAAGA AAAAGT AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAA-T AAAA-T AAAAT
*
85313261 AAAAGT AAAAT AAAAT -AAAT AAAATT AAAA- AATAT AAGAAT AAAA
1 AAAA-T AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AA-AAT AAAA
85313306 ATATAGGAGG
Statistics
Matches: 71, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
3 3 0.04
4 7 0.10
5 34 0.48
6 27 0.38
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:85313276 original size:16 final size:16
Alignment explanation
Indices: 85313225--85313279 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
85313215 AAAATAAAAT
* * *
85313225 AATAAAATTGAAATGA
1 AATAAAAGTAAAATAA
*
85313241 AATAAAAGAAAAAGTAA
1 AATAAAAGTAAAA-TAA
85313258 AATAAAAGTAAAATAA
1 AATAAAAGTAAAATAA
85313274 AATAAA
1 AATAAA
85313280 TAAAATTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
16 19 0.58
17 14 0.42
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (16 bp):
AATAAAAGTAAAATAA
Found at i:85327587 original size:40 final size:40
Alignment explanation
Indices: 85327543--85327619 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
85327533 TTGATAATGG
85327543 GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATT
1 GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATT
*
85327583 GTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAAT
1 GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAAT
85327620 GTTCCATGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (40 bp):
GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATT
Found at i:85329151 original size:25 final size:26
Alignment explanation
Indices: 85329119--85329170 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
85329109 TTTACAATTT
85329119 TACCCCTAGTGGATAAATT-ACC-AAA
1 TACCCCTAG-GGATAAATTGACCTAAA
*
85329144 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCTAAA
85329170 T
1 T
85329171 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 8 0.33
25 12 0.50
26 4 0.17
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCTAAA
Found at i:85331942 original size:55 final size:54
Alignment explanation
Indices: 85331813--85332009 Score: 236
Period size: 54 Copynumber: 3.6 Consensus size: 54
85331803 GCACTAAGAT
* * * *
85331813 AAGGATATCATGTAAGACCATGCCAAGGCAAGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * *
85331867 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTGTAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
85331922 AAAGG-TCCCATGTAAGACCATGCCAAGGCGTGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
*
85331975 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
85332010 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.26
54 41 0.34
55 40 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:85342731 original size:26 final size:26
Alignment explanation
Indices: 85342702--85342811 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
85342692 TGATACAAAT
85342702 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
85342728 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85342754 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
85342780 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85342806 TGATAA
1 TGATAA
85342812 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85344843 original size:137 final size:137
Alignment explanation
Indices: 85344597--85344882 Score: 527
Period size: 137 Copynumber: 2.1 Consensus size: 137
85344587 GAGTAGTCTC
85344597 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
85344662 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
85344727 ACTGTTA
131 ACTGTTA
85344734 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
85344799 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAATGGGCTCTAGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
85344864 ACTGTTA
131 ACTGTTA
**
85344871 CCTGAATGGGCT
1 CCCAAATGGGCT
85344883 AAGGCCCAAT
Statistics
Matches: 144, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:85344890 original size:32 final size:32
Alignment explanation
Indices: 85344814--85344890 Score: 77
Period size: 32 Copynumber: 2.4 Consensus size: 32
85344804 TCTGAATAAG
* * *
85344814 GGGCTAAGGCCCAGTTTATTGTAATCTGAAAT
1 GGGCTAAGGCCCAGTTCACTGTAACCTGAAAT
* *
85344846 GGGCTCTA-GCCCAGTATCACTGTTACCTG-AAT
1 GGGCT-AAGGCCCAGT-TCACTGTAACCTGAAAT
85344878 GGGCTAAGGCCCA
1 GGGCTAAGGCCCA
85344891 ATGGGCTTGA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
31 1 0.03
32 25 0.69
33 10 0.28
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (32 bp):
GGGCTAAGGCCCAGTTCACTGTAACCTGAAAT
Found at i:85348204 original size:40 final size:40
Alignment explanation
Indices: 85348102--85348269 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
85348092 AAATTGAATG
* * * * *
85348102 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
85348142 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
85348182 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * * *
85348222 CTATCCGGGCTAGGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
85348262 ATATCCGG
1 ATATCCGG
85348270 TTATATTCCG
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 4 0.04
40 100 0.94
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:85353143 original size:26 final size:26
Alignment explanation
Indices: 85353114--85353223 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
85353104 TGATACAAAT
85353114 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
85353140 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85353166 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
85353192 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85353218 TGATAA
1 TGATAA
85353224 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85355249 original size:137 final size:137
Alignment explanation
Indices: 85355003--85355288 Score: 509
Period size: 137 Copynumber: 2.1 Consensus size: 137
85354993 GAGTAGTCTC
85355003 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
85355068 TGTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
85355133 ACTGTTA
131 ACTGTTA
85355140 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
85355205 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAATGGGCTCTAGCCTAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
85355270 ACTGTTA
131 ACTGTTA
**
85355277 CCTGAATGGGCT
1 CCCAAATGGGCT
85355289 AAGGCCCAAT
Statistics
Matches: 142, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 142 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:85358854 original size:13 final size:13
Alignment explanation
Indices: 85358836--85358860 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85358826 GGAGCACCAC
85358836 ATGGCCGTGTGAT
1 ATGGCCGTGTGAT
85358849 ATGGCCGTGTGA
1 ATGGCCGTGTGA
85358861 CTGGACACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.40, T:0.28
Consensus pattern (13 bp):
ATGGCCGTGTGAT
Found at i:85359574 original size:12 final size:12
Alignment explanation
Indices: 85359541--85359582 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
85359531 CTTTTGATGG
85359541 TTTTCTACATATT
1 TTTTCT-CATATT
*
85359554 TATTCTCATATT
1 TTTTCTCATATT
*
85359566 TTTTTTCAT-TT
1 TTTTCTCATATT
85359577 TTTTCT
1 TTTTCT
85359583 ATTTACTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 7 0.28
12 13 0.52
13 5 0.20
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTCTCATATT
Found at i:85366026 original size:8 final size:8
Alignment explanation
Indices: 85366010--85366048 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
85366000 TATTAAAGTG
85366010 TAAAATAA
1 TAAAATAA
*
85366018 TATAATAA
1 TAAAATAA
85366026 TAAAAT-A
1 TAAAATAA
*
85366033 TAAAATAG
1 TAAAATAA
85366041 TAAAATAA
1 TAAAATAA
85366049 ATATTATGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (8 bp):
TAAAATAA
Found at i:85366036 original size:23 final size:23
Alignment explanation
Indices: 85365977--85366048 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
85365967 AAATATGATG
*
85365977 TAATAATAATATAAAATAACAT-A
1 TAATAA-AATATAAAATAATATAA
* * *
85366000 TATTAAAGTGTAAAATAATATAA
1 TAATAAAATATAAAATAATATAA
* *
85366023 TAATAAAATATAAAATAGTAAAA
1 TAATAAAATATAAAATAATATAA
85366046 TAA
1 TAA
85366049 ATATTATGTA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 12 0.31
23 27 0.69
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (23 bp):
TAATAAAATATAAAATAATATAA
Found at i:85366044 original size:15 final size:15
Alignment explanation
Indices: 85366009--85366047 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
85365999 ATATTAAAGT
*
85366009 GTAAAATAATATAATA
1 GTAAAAT-ATAAAATA
*
85366025 ATAAAATATAAAATA
1 GTAAAATATAAAATA
85366040 GTAAAATA
1 GTAAAATA
85366048 AATATTATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (15 bp):
GTAAAATATAAAATA
Found at i:85367732 original size:44 final size:44
Alignment explanation
Indices: 85367667--85368099 Score: 191
Period size: 44 Copynumber: 9.8 Consensus size: 44
85367657 ATCTATTATT
* * *
85367667 TTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATTTGTCAGC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCAGC
* * *
85367711 TTCGATTTGCTCTCTAACAATACAGAGATGCCAAATCTGTCATC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCAGC
* * * *
85367755 TTTGATCTGTTTTCTGACAATACAGAGATGCCAAA----TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCAGC
* * * * * *
85367795 TTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAG-CTATGTC
1 TTCGATCTGCTCTCTGAC--AATACA-GAG-ATGCCAAATCTGTC-A-G-C
* * * * * *
85367842 TTCGATTTACTCCCTGTCGAATACAGAGATGTCAAATCTG-CTATC
1 TTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGTC-AGC
* ** * *
85367887 TTCAATCTATTCTCTGACAATACAGAGACGCCAAA----TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCAGC
* * * ** * * **
85367927 TTAGATTTGCT-TCAAGGTAA-ACACGTGAAAGCCAAATC-AACTATGTC
1 TTCGATCTGCTCTC-TGACAATACA-GAG-ATGCCAAATCTGTC-A-G-C
* * *
85367974 TTCGATCTGCTCCCTGTCGAATACAGAGATGCCAAATCTG-CTATC
1 TTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGTC-AGC
* * * *
85368019 TTCGATCTACTCTTTGACAATACAGAGATGCCAAATATG-CTGTC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCAG-C
85368063 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATC
85368100 ATCTTAGATT
Statistics
Matches: 292, Mismatches: 68, Indels: 58
0.70 0.16 0.14
Matches are distributed among these distances:
38 2 0.01
39 10 0.03
40 31 0.11
41 15 0.05
44 141 0.48
45 31 0.11
47 45 0.15
48 10 0.03
49 7 0.02
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCAGC
Found at i:85367971 original size:132 final size:132
Alignment explanation
Indices: 85367729--85368054 Score: 528
Period size: 132 Copynumber: 2.5 Consensus size: 132
85367719 GCTCTCTAAC
* * *
85367729 AATACAGAGATGCCAAATCTG-TCATCTTTGATCTGTTTTCTGACAATACAGAGATGCCAAATCA
1 AATACAGAGATGCCAAATCTGCT-ATCTTCGATCTATTCTCTGACAATACAGAGATGCCAAATCA
* *
85367793 TCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTACTCCCTG
65 TCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTACTCCCTG
85367858 TCG
130 TCG
* * *
85367861 AATACAGAGATGTCAAATCTGCTATCTTCAATCTATTCTCTGACAATACAGAGACGCCAAATCAT
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTATTCTCTGACAATACAGAGATGCCAAATCAT
* *
85367926 CTTAGATTTGCTTCAAGGTAAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTGCTCCCTGT
66 CTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTACTCCCTGT
85367991 CG
131 CG
* *
85367993 AATACAGAGATGCCAAATCTGCTATCTTCGATCTACTCTTTGACAATACAGAGATGCCAAAT
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTATTCTCTGACAATACAGAGATGCCAAAT
85368055 ATGCTGTCTT
Statistics
Matches: 178, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 177 0.99
133 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.29
Consensus pattern (132 bp):
AATACAGAGATGCCAAATCTGCTATCTTCGATCTATTCTCTGACAATACAGAGATGCCAAATCAT
CTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTACTCCCTGT
CG
Found at i:85368008 original size:88 final size:88
Alignment explanation
Indices: 85367905--85368187 Score: 294
Period size: 88 Copynumber: 3.2 Consensus size: 88
85367895 ATTCTCTGAC
* *
85367905 AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAAGGTAAACACGTGAAAGCCAAATCAACTA
1 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAACTA
85367970 TGTCTTCGATCTGCTCCCTGTCG
66 TGTCTTCGATCTGCTCCCTGTCG
* * * ** * * *
85367993 AATACAGAGATGCCAAATCTGCTATCTTCGATCTAC-TCTTTG-ACAATAC-AGAGATGCCAAAT
1 AATACAGAGATGCCAAA--T-C-ATCTTAGATTTGCTTCAATGTA-AACACGTGA-AAGCCAAAT
* * *
85368055 --A-TGCTGTCTTCGATCTGCTCTCTGAC-
60 CAACT-ATGTCTTCGATCTGCTCCCTGTCG
*
85368081 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGCTA
1 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAACTA
85368146 TGTCTTCGATCTGCTCTCC-GTCG
66 TGTCTTCGATCTGCTC-CCTGTCG
**
85368169 AATATGGAGATGCCAAATC
1 AATACAGAGATGCCAAATC
85368188 TATTTCTTCG
Statistics
Matches: 153, Mismatches: 27, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
84 10 0.07
85 17 0.11
86 4 0.03
87 18 0.12
88 53 0.35
89 21 0.14
90 4 0.03
91 16 0.10
92 10 0.07
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (88 bp):
AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAACTA
TGTCTTCGATCTGCTCCCTGTCG
Found at i:85368043 original size:176 final size:178
Alignment explanation
Indices: 85367825--85368188 Score: 545
Period size: 176 Copynumber: 2.1 Consensus size: 178
85367815 ACACGTGAAA
* * * * *
85367825 GCCAAATCAGCTATGTCTTCGATTTACTCCCTGTCGAATACAGAGATGTCAAATCTGCTATCTTC
1 GCCAAATCTGCTA-GTCTTCGATCTACTCCCTGACGAATACAGAGATGCCAAATATGCTATCTTC
*
85367890 AATCTATTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAAGGTAAACACGTGA
65 AATCTACTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAAGGTAAACACGTGA
85367955 AAGCCAAATCAACTATGTCTTCGATCTGCTC-CCTGTCGAATACAGAGAT
130 AAGCCAAATCAACTATGTCTTCGATCTGCTCTCC-GTCGAATACAGAGAT
** * *
85368004 GCCAAATCTGCTA-TCTTCGATCTACTCTTTGAC-AATACAGAGATGCCAAATATGCTGTCTTCG
1 GCCAAATCTGCTAGTCTTCGATCTACTCCCTGACGAATACAGAGATGCCAAATATGCTATCTTCA
* * *
85368067 ATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAA
66 ATCTACTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAAGGTAAACACGTGAA
* **
85368132 AGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGAT
131 AGCCAAATCAACTATGTCTTCGATCTGCTCTCCGTCGAATACAGAGAT
85368180 GCCAAATCT
1 GCCAAATCT
85368189 ATTTCTTCGA
Statistics
Matches: 168, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
176 138 0.82
177 18 0.11
179 12 0.07
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (178 bp):
GCCAAATCTGCTAGTCTTCGATCTACTCCCTGACGAATACAGAGATGCCAAATATGCTATCTTCA
ATCTACTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAAGGTAAACACGTGAA
AGCCAAATCAACTATGTCTTCGATCTGCTCTCCGTCGAATACAGAGAT
Found at i:85368198 original size:220 final size:218
Alignment explanation
Indices: 85368048--85368482 Score: 497
Period size: 220 Copynumber: 2.0 Consensus size: 218
85368038 ATACAGAGAT
*
85368048 GCCAAATATGC-TGTCTTCGATCTGCT-CTCTG-ACAATAC-AGAGATGCCAAATCATCTTAGAT
1 GCCAAATATACATGTCTTCGATCTGCTCCT-TGTA-AATACAAG-GATGCCAAATCATCTTAGAT
* * *
85368109 TTGCTTCAATGT-AAACA-CGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGTCGAAT
63 CTACTTCAATGTAAAACATC-CGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGTCGAAT
* * * *
85368172 ATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTAATAGTACAGAGATGCCAAATCATCTTA
127 ATGGAGATGCCAAATCTATTTCTTCGATCTGCTCCCTAATAATACAGAGATGCCAAATCATCTTA
85368237 GATCTACTTCAGCGTAAACACATGAAA
192 GATCTACTTCAGCGTAAACACATGAAA
* * *
85368264 GCCAAATCTACTATGTCTTCGATCTGCTCCTTGTAAATGCAAGGATGCCAAATCATCTTGGATCT
1 GCCAAATATAC-ATGTCTTCGATCTGCTCCTTGTAAATACAAGGATGCCAAATCATCTTAGATCT
* * ** * *
85368329 ACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATAT
65 ACTTCAATGT-AAAACATCCGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGTCGAATAT
** * * * * * ** *
85368394 GGAGATGCCAAATC-ATCTTCTTTAATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGG
129 GGAGATGCCAAATCTAT-TTCTTCGATCTGCTCCCTAATAATACAGAGATGCCAAATCATCTTAG
* *
85368458 ATCTGCTTCAGCGTAAACACCTGAA
193 ATCTACTTCAGCGTAAACACATGAA
85368483 GGTCAAATCT
Statistics
Matches: 187, Mismatches: 23, Indels: 14
0.83 0.10 0.06
Matches are distributed among these distances:
216 9 0.05
218 49 0.26
219 7 0.04
220 121 0.65
221 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (218 bp):
GCCAAATATACATGTCTTCGATCTGCTCCTTGTAAATACAAGGATGCCAAATCATCTTAGATCTA
CTTCAATGTAAAACATCCGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGTCGAATATGG
AGATGCCAAATCTATTTCTTCGATCTGCTCCCTAATAATACAGAGATGCCAAATCATCTTAGATC
TACTTCAGCGTAAACACATGAAA
Found at i:85368208 original size:131 final size:132
Alignment explanation
Indices: 85368043--85368292 Score: 360
Period size: 131 Copynumber: 1.9 Consensus size: 132
85368033 TGACAATACA
* *
85368043 GAGATGCCAAATATGCTGTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGA
1 GAGATGCCAAATATGATGTCTTCGATCTGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGA
* * * *
85368108 TTTGCTTCAATGTAAACACGTGAAAGCCAAATC-AGCTATGTCTTCGATCTGCTCTCCGTCGAAT
66 TCTACTTCAACGTAAACACATGAAAGCCAAATCTA-CTATGTCTTCGATCTGCTCTCCGTCGAAT
85368172 ATG
130 ATG
* * * * * *
85368175 GAGATGCCAAATCT-ATTTCTTCGATTTGTTCTCTAATAGTACAGAGATGCCAAATCATCTTAGA
1 GAGATGCCAAATATGATGTCTTCGATCTGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGA
*
85368239 TCTACTTCAGCGTAAACACATGAAAGCCAAATCTACTATGTCTTCGATCTGCTC
66 TCTACTTCAACGTAAACACATGAAAGCCAAATCTACTATGTCTTCGATCTGCTC
85368293 CTTGTAAATG
Statistics
Matches: 104, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
131 90 0.87
132 14 0.13
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (132 bp):
GAGATGCCAAATATGATGTCTTCGATCTGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGA
TCTACTTCAACGTAAACACATGAAAGCCAAATCTACTATGTCTTCGATCTGCTCTCCGTCGAATA
TG
Found at i:85368401 original size:308 final size:307
Alignment explanation
Indices: 85367770--85368412 Score: 800
Period size: 308 Copynumber: 2.1 Consensus size: 307
85367760 TCTGTTTTCT
85367770 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAG
1 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAG
* * *
85367835 CTATGTCTTCGATTTACTCCCTGTCGAATACAGAGATGTCAAATCTGCTATCTTCAATCTATTCT
66 CTATGTCTTCGATCTACTCCCTGTCGAATACAGAGATGCCAAATCTGATATCTTCAATCTATTCT
* * * *
85367900 CTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAAGGTAAACACGTGAAAGCCAAATC
131 CTAACAATACAGAGACGCCAAATCATCTTAGATCTACTTCAAGGTAAACACATGAAAGCCAAATC
*
85367965 AACTATGTCTTCGATCTGCTCCCTGTCGAATACAGAGATGCCAAATCTGCTATCTTCGATCTACT
196 AACTATGTCTTCGATCTGCTCCCTGTCAAATACAGAGATGCCAAA-CTGCTATCTTCGATCTACT
* * * * *
85368030 CTTTGACAATACAGAGATGCCAAATATGCTGTCTTCGATCTGCTCTCT
260 CTGTGAAAACACAGAGAGGCCAAATATGCTGTCTTCGATCTGCTCTCC
*
85368078 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAG
1 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAG
* ** * * * *
85368143 CTATGTCTTCGATCTGCTCTCC-GTCGAATATGGAGATGCCAAATCT-ATTTCTTCGATTTGTTC
66 CTATGTCTTCGATCTACTC-CCTGTCGAATACAGAGATGCCAAATCTGATATCTTCAATCTATTC
* * *
85368206 TCTAATAGTACAGAGATGCCAAATCATCTTAGATCTACTTC-AGCGTAAACACATGAAAGCCAAA
130 TCTAACAATACAGAGACGCCAAATCATCTTAGATCTACTTCAAG-GTAAACACATGAAAGCCAAA
* * * *
85368270 TCTACTATGTCTTCGATCTGCTCCTTGT-AAATGCA-AGGATGCCAAA-T-C-ATCTTGGATCTA
194 TCAACTATGTCTTCGATCTGCTCCCTGTCAAATACAGA-GATGCCAAACTGCTATCTTCGATCTA
* ** * *
85368330 CTTCGATGTGAAAACATCCGA-AGGTTAGATCTGCTATGTCTTCGATCTGCTCTCC
258 C-TC--TGTGAAAACA-CAGAGAGGCCAAATATGC--TGTCTTCGATCTGCTCTCC
* **
85368385 GTCGAATATGGAGATGCCAAATCATCTT
1 GAC-AATACAGAGATGCCAAATCATCTT
85368413 CTTTAATTTG
Statistics
Matches: 289, Mismatches: 36, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
302 12 0.04
303 3 0.01
304 1 0.00
305 16 0.06
306 19 0.07
307 112 0.39
308 124 0.43
309 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (307 bp):
GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAG
CTATGTCTTCGATCTACTCCCTGTCGAATACAGAGATGCCAAATCTGATATCTTCAATCTATTCT
CTAACAATACAGAGACGCCAAATCATCTTAGATCTACTTCAAGGTAAACACATGAAAGCCAAATC
AACTATGTCTTCGATCTGCTCCCTGTCAAATACAGAGATGCCAAACTGCTATCTTCGATCTACTC
TGTGAAAACACAGAGAGGCCAAATATGCTGTCTTCGATCTGCTCTCC
Found at i:85369433 original size:7 final size:7
Alignment explanation
Indices: 85369421--85369481 Score: 67
Period size: 7 Copynumber: 9.0 Consensus size: 7
85369411 GGCCTCTCCA
85369421 TTTTTTC
1 TTTTTTC
85369428 TTTTTTC
1 TTTTTTC
85369435 TTTTTTC
1 TTTTTTC
85369442 TCTTTTT-
1 T-TTTTTC
*
85369449 TCTTTT-
1 TTTTTTC
85369455 TTTTTTC
1 TTTTTTC
85369462 TCTTTTTC
1 T-TTTTTC
85369470 --TTTTC
1 TTTTTTC
85369475 TTTTTTC
1 TTTTTTC
85369482 CCTTTTTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
5 5 0.11
6 9 0.19
7 22 0.47
8 11 0.23
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTC
Found at i:85369444 original size:27 final size:28
Alignment explanation
Indices: 85369414--85369470 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
85369404 TCACCTAGGC
85369414 CTCTCCATTT-TTTCTTTTTTCT-TTTTT
1 CTCT-CATTTCTTTCTTTTTTCTCTTTTT
** *
85369441 CTCTTTTTTCTTTTTTTTTTCTCTTTTT
1 CTCTCATTTCTTTCTTTTTTCTCTTTTT
85369469 CT
1 CT
85369471 TTTCTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 3 0.12
27 15 0.60
28 7 0.28
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (28 bp):
CTCTCATTTCTTTCTTTTTTCTCTTTTT
Found at i:85369445 original size:16 final size:15
Alignment explanation
Indices: 85369421--85369481 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 15
85369411 GGCCTCTCCA
85369421 TTTTTTCTTTTTTCT
1 TTTTTTCTTTTTTCT
85369436 TTTTTCTCTTTTTTCT
1 TTTTT-TCTTTTTTCT
85369452 TTTTTT-TTTCTCTT-T
1 TTTTTTCTTT-T-TTCT
85369467 TTCTTTTCTTTTTTC
1 TT-TTTTCTTTTTTC
85369482 CCTTTTTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.08
15 12 0.30
16 22 0.55
17 3 0.08
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTCTTTTTTCT
Found at i:85369460 original size:20 final size:21
Alignment explanation
Indices: 85369421--85369489 Score: 72
Period size: 20 Copynumber: 3.3 Consensus size: 21
85369411 GGCCTCTCCA
*
85369421 TTTTTTCTTTT-TTCTTTTTTC
1 TTTTTTCTTTTCTT-TTTTCTC
85369442 TCTTTTTTCTTTT-TTTTTTCTC
1 T-TTT-TTCTTTTCTTTTTTCTC
*
85369464 -TTTTTCTTTTCTTTTTTCCC
1 TTTTTTCTTTTCTTTTTTCTC
85369484 TTTTTT
1 TTTTTT
85369490 TTTGAAATAG
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.17
20 11 0.26
21 6 0.14
22 9 0.21
23 9 0.21
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTCTTTTCTTTTTTCTC
Found at i:85371956 original size:40 final size:39
Alignment explanation
Indices: 85371788--85371958 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
85371778 AGAAATTGAA
* *
85371788 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
85371828 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
85371868 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
85371908 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
85371948 TGATATCCGGG
1 TGATATCCGGG
85371959 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:85379990 original size:40 final size:39
Alignment explanation
Indices: 85379822--85379992 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
85379812 AGAAATTGAA
* *
85379822 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
85379862 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
85379902 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
85379942 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
85379982 TGATATCCGGG
1 TGATATCCGGG
85379993 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:85386309 original size:23 final size:23
Alignment explanation
Indices: 85386250--85386321 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
85386240 AAATATGATG
*
85386250 TAATAATAATATAAAATAACAT-A
1 TAATAA-AATATAAAATAATATAA
* * *
85386273 TATTAAAGTGTAAAATAATATAA
1 TAATAAAATATAAAATAATATAA
*
85386296 TAATAAAATATAAAATAGTATAA
1 TAATAAAATATAAAATAATATAA
85386319 TAA
1 TAA
85386322 ATATTATGTA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 12 0.30
23 28 0.70
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (23 bp):
TAATAAAATATAAAATAATATAA
Found at i:85386341 original size:24 final size:25
Alignment explanation
Indices: 85386309--85386374 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
85386299 TAAAATATAA
* *
85386309 AATAGTATAATAAATATTATGT-AAT
1 AATAATATAATAAATA-TAGGTAAAT
85386334 AA-AATATAATATAGATATAGGTAAAT
1 AATAATATAATA-A-ATATAGGTAAAT
85386360 AATAATAT-ATAAATA
1 AATAATATAATAAATA
85386375 AAGTTTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 8 0.23
26 11 0.31
27 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AATAATATAATAAATATAGGTAAAT
Found at i:85388408 original size:51 final size:50
Alignment explanation
Indices: 85388352--85388448 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 50
85388342 AATAAATAAT
* * *
85388352 AAAATATATATAAGT-TAA-AATATAATATATAATAATAATTTACAAATTTTG
1 AAAATATAAATAA-TATAATAA-ATAATATAT-ATAATAAATTAAAAATTTTG
85388403 AAAATATAAATAATATAATAAATAATATATATAATAAATTAAAAAT
1 AAAATATAAATAATATAATAAATAATATATATAATAAATTAAAAAT
85388449 AAGTTTAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
50 15 0.37
51 24 0.59
52 2 0.05
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (50 bp):
AAAATATAAATAATATAATAAATAATATATATAATAAATTAAAAATTTTG
Found at i:85388425 original size:12 final size:13
Alignment explanation
Indices: 85388406--85388436 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
85388396 AATTTTGAAA
85388406 ATATAAATAATAT
1 ATATAAATAATAT
85388419 A-ATAAATAATAT
1 ATATAAATAATAT
85388431 ATATAA
1 ATATAA
85388437 TAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAAATAATAT
Found at i:85388434 original size:16 final size:15
Alignment explanation
Indices: 85388411--85388441 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
85388401 TGAAAATATA
85388411 AATAATATAATAAAT
1 AATAATATAATAAAT
85388426 AATATATATAATAAAT
1 AATA-ATATAATAAAT
85388442 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAATATAATAAAT
Found at i:85390521 original size:205 final size:205
Alignment explanation
Indices: 85390154--85390696 Score: 969
Period size: 205 Copynumber: 2.6 Consensus size: 205
85390144 CTGCTTCTTT
*
85390154 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
*
85390219 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACTAAATCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTTGGAT
85390284 CTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGAT
131 CTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGAT
85390349 GCCAGACTTC
196 GCCAGACTTC
* *
85390359 GATTTGCTCTCTAATAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
85390424 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTTGGAT
85390489 CTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGAT
131 CTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGAT
85390554 GCCAGACTTC
196 GCCAGACTTC
* *
85390564 GATTTGCTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGA
1 GATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* * * * * *
85390629 AAGCCCAAATCAGCTATGTCTTTGGTTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCTTGGA
66 AAG-CCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTTGGA
85390694 TCT
130 TCT
85390697 TACTTCAGCC
Statistics
Matches: 323, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
205 265 0.82
206 58 0.18
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (205 bp):
GATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTTGGAT
CTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGAT
GCCAGACTTC
Found at i:85396600 original size:49 final size:49
Alignment explanation
Indices: 85396477--85396836 Score: 567
Period size: 49 Copynumber: 7.5 Consensus size: 49
85396467 TATCACAGTT
* * *
85396477 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTAT--CATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACACATAC
*
85396524 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
85396573 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
85396622 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
*
85396671 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
85396720 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
*
85396769 --GCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
1 ATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
*
85396816 --GCA-TATTCACATTCATCACAT
1 ATACACT-TTCACATTCATCACAT
85396837 AAAATCCTAA
Statistics
Matches: 300, Mismatches: 9, Indels: 8
0.95 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 99 0.33
48 2 0.01
49 198 0.66
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
Found at i:85396833 original size:25 final size:25
Alignment explanation
Indices: 85396758--85396835 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
85396748 ATTCGGCCTT
*
85396758 ATCACACATACGCATGTTCACATTC
1 ATCACACATACGCATATTCACATTC
** * * *
85396783 AT--CACATTGGC-CATTCGGCCTT-
1 ATCACACATACGCATATTC-ACATTC
85396805 ATCACACATACGCATATTCACATTC
1 ATCACACATACGCATATTCACATTC
85396830 ATCACA
1 ATCACA
85396836 TAAAATCCTA
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 5 0.14
23 10 0.27
24 10 0.27
25 12 0.32
ACGTcount: A:0.31, C:0.32, G:0.09, T:0.28
Consensus pattern (25 bp):
ATCACACATACGCATATTCACATTC
Found at i:85401043 original size:16 final size:14
Alignment explanation
Indices: 85401002--85401054 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
85400992 TCTATAACTT
*
85401002 TGAATGCAAACG-A
1 TGAATGCAAATGCA
85401015 TGCAATG-AAATGCTA
1 TG-AATGCAAATGC-A
85401030 TGAGATGCAAATGCA
1 TGA-ATGCAAATGCA
85401045 TGAATGCAAA
1 TGAATGCAAA
85401055 AAGGATATCG
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 6 0.18
14 12 0.35
15 10 0.29
16 6 0.18
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (14 bp):
TGAATGCAAATGCA
Found at i:85401098 original size:14 final size:14
Alignment explanation
Indices: 85401075--85401104 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
85401065 ATTCTGGTTC
85401075 AACTTCATTTAGAA
1 AACTTCATTTAGAA
*
85401089 AACTTTATTTAGAA
1 AACTTCATTTAGAA
85401103 AA
1 AA
85401105 ATAATATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (14 bp):
AACTTCATTTAGAA
Found at i:85404006 original size:40 final size:40
Alignment explanation
Indices: 85403971--85404152 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
85403961 TACTCGCTTG
* *
85403971 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACA
* * *
85404011 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACAAA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACA
*
85404051 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACA
* * *
85404091 AATGCCTTCGGGACTTAGCCCGAA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCGCACA
85404131 AATGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
85404153 GTTATCATCC
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.01
40 129 0.99
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACA
Found at i:85408227 original size:3 final size:3
Alignment explanation
Indices: 85408215--85408243 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
85408205 TAATTTTAAG
85408215 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
85408244 TGATATTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:85408305 original size:25 final size:25
Alignment explanation
Indices: 85408227--85408306 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
85408217 AAAATAATAA
*
85408227 TAATAATA-ATAATAATATGATATT
1 TAATAATACATAATAATATAATATT
* *
85408251 GT-ATTATATCA-AATAATATAAACATT
1 -TAATAATA-CATAATAATAT-AATATT
*
85408277 TAATAATACATAAAAATATAATATT
1 TAATAATACATAATAATATAATATT
85408302 TAATA
1 TAATA
85408307 GTGAATTTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
24 5 0.11
25 22 0.50
26 17 0.39
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.39
Consensus pattern (25 bp):
TAATAATACATAATAATATAATATT
Found at i:85408350 original size:15 final size:16
Alignment explanation
Indices: 85408330--85408472 Score: 60
Period size: 15 Copynumber: 9.3 Consensus size: 16
85408320 TAGATAGTAT
*
85408330 ATAATAGTAT-ATAAA
1 ATAATAATATAATAAA
85408345 ATAATAATATAAT-AA
1 ATAATAATATAATAAA
* *
85408360 ATGAAATAAT-TTATAAT
1 AT--AATAATATAATAAA
85408377 AT-ATAATAT-A-AAA
1 ATAATAATATAATAAA
* * **
85408390 AT-GTAATTTTTTAAA
1 ATAATAATATAATAAA
*
85408405 ATAAT-GTATAATATAA
1 ATAATAATATAATA-AA
85408421 ATAAATAA-ATAATAAA
1 AT-AATAATATAATAAA
85408437 AT-AT-ATATAAGTTAAA
1 ATAATAATATAA--TAAA
85408453 AT-ATAATAT-ATAATA
1 ATAATAATATAATAA-A
85408468 ATAAT
1 ATAAT
85408473 TTACAAATTT
Statistics
Matches: 98, Mismatches: 13, Indels: 33
0.68 0.09 0.23
Matches are distributed among these distances:
13 10 0.10
14 15 0.15
15 26 0.27
16 25 0.26
17 22 0.22
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.37
Consensus pattern (16 bp):
ATAATAATATAATAAA
Found at i:85408408 original size:26 final size:29
Alignment explanation
Indices: 85408344--85408409 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
85408334 TAGTATATAA
85408344 AATAATAATATAATAAATGAAATAATTTAT
1 AATAATAATATAATAAATGAAAT-ATTTAT
* *
85408374 AATATATAATATAA-AAATGTAAT-TTTTT
1 AATA-ATAATATAATAAATGAAATATTTAT
85408402 AA-AATAAT
1 AATAATAAT
85408410 GTATAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 5 0.15
27 1 0.03
28 6 0.18
30 12 0.36
31 9 0.27
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (29 bp):
AATAATAATATAATAAATGAAATATTTAT
Found at i:85408507 original size:12 final size:13
Alignment explanation
Indices: 85408488--85408518 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
85408478 AATTTTGAAA
85408488 ATATAAATAATAT
1 ATATAAATAATAT
85408501 A-ATAAATAATAT
1 ATATAAATAATAT
85408513 ATATAA
1 ATATAA
85408519 TAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAAATAATAT
Found at i:85408510 original size:51 final size:50
Alignment explanation
Indices: 85408434--85408530 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 50
85408424 AATAAATAAT
* * *
85408434 AAAATATATATAAGTTAAAATATAATATATAATAATAATTTACAAATTTTG
1 AAAATATAAATAAGTTAAAATATAATATAT-ATAATAAATTAAAAATTTTG
85408485 AAAATATAAATAA-TATAATAA-ATAATATATATAATAAATTAAAAAT
1 AAAATATAAATAAGT-TAA-AATATAATATATATAATAAATTAAAAAT
85408531 AAGTTTAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
50 15 0.37
51 24 0.59
52 2 0.05
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (50 bp):
AAAATATAAATAAGTTAAAATATAATATATATAATAAATTAAAAATTTTG
Found at i:85408516 original size:16 final size:15
Alignment explanation
Indices: 85408493--85408523 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
85408483 TGAAAATATA
85408493 AATAATATAATAAAT
1 AATAATATAATAAAT
85408508 AATATATATAATAAAT
1 AATA-ATATAATAAAT
85408524 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAATATAATAAAT
Found at i:85411094 original size:21 final size:19
Alignment explanation
Indices: 85411068--85411114 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
85411058 ATCTAATTAC
*
85411068 AAATATTTAATTATTATATTT
1 AAATATTTAAATA-TAT-TTT
85411089 AAATATTTAAATATATTTT
1 AAATATTTAAATATATTTT
*
85411108 ATATATT
1 AAATATT
85411115 CCAATTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 9 0.38
20 3 0.12
21 12 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AAATATTTAAATATATTTT
Found at i:85411376 original size:13 final size:13
Alignment explanation
Indices: 85411355--85411402 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
85411345 AACACTCAAA
85411355 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
85411368 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
85411381 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
85411394 TTTTCAAAA
1 TTTTCAAAA
85411403 ACATTGCCAA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:85411739 original size:3 final size:3
Alignment explanation
Indices: 85411731--85411762 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
85411721 GAGCTTTCAA
85411731 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
85411763 ATAAAGACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:85413988 original size:54 final size:54
Alignment explanation
Indices: 85413921--85414071 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
85413911 TACCCTACAA
* *
85413921 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
85413975 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
85414029 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
85414072 CTGTAAATTG
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:85414009 original size:81 final size:81
Alignment explanation
Indices: 85413918--85414078 Score: 232
Period size: 81 Copynumber: 2.0 Consensus size: 81
85413908 TTCTACCCTA
* * *
85413918 CAAGGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
*
85413983 TGGTAATTTTGTAAAC
66 TGGTAATTCTGTAAAC
* * * * * *
85413999 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
85414064 TGGTAATTCTGTAAA
66 TGGTAATTCTGTAAA
85414079 TTGAAGGTAA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
TGGTAATTCTGTAAAC
Found at i:85414078 original size:27 final size:27
Alignment explanation
Indices: 85413918--85414071 Score: 209
Period size: 27 Copynumber: 5.7 Consensus size: 27
85413908 TTCTACCCTA
*
85413918 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
85413945 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
85413972 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
85413999 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
85414026 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
85414053 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
85414072 CTGTAAATTG
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:85414097 original size:81 final size:81
Alignment explanation
Indices: 85413929--85414098 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
85413919 AAGGGTATTT
* * *
85413929 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
***
85413994 TAAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * * *
85414010 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
**
85414075 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
85414091 CGGTAATT
1 CGGTAATT
85414099 CTGTAAACTG
Statistics
Matches: 71, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
81 69 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
TAAACCAAGGGTAAAA
Found at i:85414328 original size:27 final size:27
Alignment explanation
Indices: 85414066--85414306 Score: 310
Period size: 27 Copynumber: 8.9 Consensus size: 27
85414056 GGGTATTTTG
* * *
85414066 GTAATTCTGTAAATTGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
85414093 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
85414120 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
85414147 GTAATTCTGTAAA-CTGAGGGGAAAACA
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
85414174 GTAATTCTGTAAATCGAGGATAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
85414201 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
85414228 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
**
85414255 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
85414282 GTAATTCTGTAAATCGAGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAA
85414307 TGGTAATTTT
Statistics
Matches: 189, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
26 3 0.02
27 182 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:85414328 original size:54 final size:54
Alignment explanation
Indices: 85414065--85414314 Score: 401
Period size: 54 Copynumber: 4.6 Consensus size: 54
85414055 AGGGTATTTT
* * **
85414065 GGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
85414119 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGGAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
85414173 AGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
85414227 GGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
*
85414281 GGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATT
85414315 TTACAAGTCG
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
Found at i:85414328 original size:81 final size:81
Alignment explanation
Indices: 85414064--85414314 Score: 364
Period size: 81 Copynumber: 3.1 Consensus size: 81
85414054 AAGGGTATTT
* * * * *
85414064 TGGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
85414129 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * *
85414145 TAGTAATTCTGTAAA-CTGAGGGGAAAACAGTAATTCTGTAAA-TCGAGGATAAAATAGTAATTC
1 TGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAAATGGTAATTC
85414208 TGTAAA-CTGAGGGTAAAA
64 TGTAAATC-GAGGGTAAAA
*
85414226 CGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
1 TGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
85414291 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
85414307 TGGTAATT
1 TGGTAATT
85414315 TTACAAGTCG
Statistics
Matches: 149, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
80 2 0.01
81 144 0.97
82 3 0.02
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:85417815 original size:27 final size:27
Alignment explanation
Indices: 85417785--85418033 Score: 318
Period size: 27 Copynumber: 9.2 Consensus size: 27
85417775 GGGTATTTTA
* *
85417785 GTAATTCTGTAAATTGAAGGTAAAACG
1 GTAATTCTGTAAATTGAGGGTAAAATG
*
85417812 GTAATTCTGTAAACTGAGGGTAAAATG
1 GTAATTCTGTAAATTGAGGGTAAAATG
* * *
85417839 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATTGAGGGTAAAATG
* * *
85417866 GTAATTCTGTAAACTGAGGGGAAAATA
1 GTAATTCTGTAAATTGAGGGTAAAATG
* * *
85417893 GTAATTCTGTAAATCGAGGATAAAATA
1 GTAATTCTGTAAATTGAGGGTAAAATG
* *
85417920 GTAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAATTGAGGGTAAAATG
* * **
85417947 GTAATTCTGGAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATTGAGGGTAAAATG
*
85417974 GTAATTCTGTAAACTGAGGGTAAAATG
1 GTAATTCTGTAAATTGAGGGTAAAATG
*
85418001 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATTGAGGGTAAAATG
85418028 GTAATT
1 GTAATT
85418034 TTACAAGTCG
Statistics
Matches: 191, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 191 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATTGAGGGTAAAATG
Found at i:85418047 original size:54 final size:54
Alignment explanation
Indices: 85417785--85418033 Score: 390
Period size: 54 Copynumber: 4.6 Consensus size: 54
85417775 GGGTATTTTA
* * **
85417785 GTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATG
* * *
85417839 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGGAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATG
* *
85417893 GTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATG
* *
85417947 GTAATTCTGGAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATG
*
85418001 GTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATT
85418034 TTACAAGTCG
Statistics
Matches: 176, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 176 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATG
Found at i:85419139 original size:7 final size:7
Alignment explanation
Indices: 85419127--85419185 Score: 59
Period size: 7 Copynumber: 8.0 Consensus size: 7
85419117 TTATTTTGTT
85419127 TTATTTA
1 TTATTTA
85419134 TTATTTA
1 TTATTTA
85419141 TTATTTA
1 TTATTTA
85419148 TTA-TTA
1 TTATTTA
85419154 TT-TATTA
1 TTAT-TTA
85419161 TTATTTTA
1 TTA-TTTA
85419169 TTTTATTTA
1 --TTATTTA
85419178 TTAATTTA
1 TT-ATTTA
85419186 GGTTAGGCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
6 5 0.11
7 24 0.53
8 8 0.18
9 5 0.11
10 3 0.07
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTATTTA
Found at i:85419144 original size:10 final size:10
Alignment explanation
Indices: 85419138--85419180 Score: 70
Period size: 10 Copynumber: 4.3 Consensus size: 10
85419128 TATTTATTAT
85419138 TTATTATTTA
1 TTATTATTTA
85419148 TTATTATTTA
1 TTATTATTTA
85419158 TTATTATTTTA
1 TTATTA-TTTA
85419169 TT-TTATTTA
1 TTATTATTTA
85419178 TTA
1 TTA
85419181 ATTTAGGTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 6 0.19
10 19 0.61
11 6 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTATTTA
Found at i:85419178 original size:17 final size:15
Alignment explanation
Indices: 85419126--85419185 Score: 72
Period size: 14 Copynumber: 4.0 Consensus size: 15
85419116 ATTATTTTGT
85419126 TTTATTTATTATTTA
1 TTTATTTATTATTTA
85419141 -TTATTTATTA-TTA
1 TTTATTTATTATTTA
85419154 TTTA-TTATTATTTTA
1 TTTATTTATTA-TTTA
85419169 TTTTATTTATTAATTTA
1 -TTTATTTATT-ATTTA
85419186 GGTTAGGCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
13 9 0.23
14 13 0.33
15 3 0.08
16 4 0.10
17 9 0.23
18 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTATTTATTATTTA
Found at i:85425786 original size:19 final size:21
Alignment explanation
Indices: 85425746--85425795 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
85425736 AAAATTGTAG
85425746 ATATTTTTATTATATTTATAT
1 ATATTTTTATTATATTTATAT
85425767 ATATTTTT-TGTA-ATTT-TAT
1 ATATTTTTAT-TATATTTATAT
85425786 ATAATTTTTA
1 AT-ATTTTTA
85425796 ATTTTCTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 5 0.19
20 11 0.42
21 10 0.38
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
ATATTTTTATTATATTTATAT
Found at i:85425926 original size:25 final size:26
Alignment explanation
Indices: 85425886--85425939 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
85425876 ATTTTTTTCA
*
85425886 TATTTTTTCATAATTTATAT-AATTTT
1 TATTTTTTAATAATTT-TATCAATTTT
*
85425912 TATTTTTTAAT-ATTTTTTCAATTTT
1 TATTTTTTAATAATTTTATCAATTTT
85425937 TAT
1 TAT
85425940 AATGTATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 2 0.08
25 13 0.52
26 10 0.40
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.69
Consensus pattern (26 bp):
TATTTTTTAATAATTTTATCAATTTT
Found at i:85425952 original size:18 final size:18
Alignment explanation
Indices: 85425931--85425990 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
85425921 ATATTTTTTC
85425931 AATTTTTATAATGTATAT
1 AATTTTTATAATGTATAT
* *
85425949 AATTTTTGAGTCATTTATTAT
1 AATTTTT-A-TAATGTA-TAT
*
85425970 ACTTTTTATAATGTATAT
1 AATTTTTATAATGTATAT
85425988 AAT
1 AAT
85425991 ATATTTTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
18 12 0.36
19 6 0.18
20 6 0.18
21 9 0.27
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (18 bp):
AATTTTTATAATGTATAT
Found at i:85425955 original size:36 final size:36
Alignment explanation
Indices: 85425879--85425990 Score: 95
Period size: 36 Copynumber: 3.0 Consensus size: 36
85425869 TATTAAAATT
* * * *
85425879 TTTTTCATATTTTTTCATAATTTATATAAT-T-TTTAT
1 TTTTTAATATTTTTTC--AATTTTTATAATGTATATAA
85425915 TTTTTAATATTTTTTCAATTTTTATAATGTATATAA
1 TTTTTAATATTTTTTCAATTTTTATAATGTATATAA
* *
85425951 TTTTTGAGTCATTTATTAT-ACTTTTTATAATGTATATAA
1 TTTTT-AAT-ATTT-TT-TCAATTTTTATAATGTATATAA
85425990 T
1 T
85425991 ATATTTTTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
34 11 0.17
35 1 0.02
36 23 0.36
37 2 0.03
38 4 0.06
39 22 0.34
40 1 0.02
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (36 bp):
TTTTTAATATTTTTTCAATTTTTATAATGTATATAA
Found at i:85426099 original size:17 final size:17
Alignment explanation
Indices: 85426079--85426122 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
85426069 ATTTTTATTT
*
85426079 TTTTTGTAATTCATATA
1 TTTTTATAATTCATATA
*
85426096 TTTTTATAATTTATATA
1 TTTTTATAATTCATATA
85426113 TTATTTATAA
1 TT-TTTATAA
85426123 ATTATTGCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 17 0.71
18 7 0.29
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (17 bp):
TTTTTATAATTCATATA
Found at i:85426181 original size:17 final size:18
Alignment explanation
Indices: 85426148--85426198 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
85426138 TATATTTTTA
*
85426148 TAATAATTTTA-ATAATTT
1 TAATTATTTTATA-AATTT
85426166 TAATT-TTTTATAAATTT
1 TAATTATTTTATAAATTT
*
85426183 TAATTATTTTTTAAAT
1 TAATTATTTTATAAAT
85426199 ATTCATAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 15 0.52
18 14 0.48
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TAATTATTTTATAAATTT
Found at i:85426259 original size:17 final size:16
Alignment explanation
Indices: 85426224--85426295 Score: 62
Period size: 15 Copynumber: 4.6 Consensus size: 16
85426214 ATTCTTTATT
*
85426224 TTTTA-AATTTTTATGA
1 TTTTATAATTTTT-TCA
85426240 TTTATATAATTTTTTCA
1 TTT-TATAATTTTTTCA
*
85426257 -TTTATAATTTTTGCA
1 TTTTATAATTTTTTCA
*
85426272 CTTTTAT-TTTTTTTCA
1 -TTTTATAATTTTTTCA
85426288 TTTT-TAAT
1 TTTTATAAT
85426296 ATATATTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
14 1 0.02
15 17 0.37
16 12 0.26
17 9 0.20
18 7 0.15
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTTATAATTTTTTCA
Found at i:85426351 original size:21 final size:21
Alignment explanation
Indices: 85426318--85426358 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
85426308 TGATTTTATG
85426318 ATTTTCTATATTTTTATAATA
1 ATTTTCTATATTTTTATAATA
*
85426339 ATTTT-TATGATTTTTTTAAT
1 ATTTTCTAT-ATTTTTATAAT
85426359 TATCTTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
ATTTTCTATATTTTTATAATA
Found at i:85434210 original size:40 final size:40
Alignment explanation
Indices: 85434187--85434446 Score: 297
Period size: 41 Copynumber: 6.4 Consensus size: 40
85434177 CGTTTTACCA
* * * *
85434187 AAAACGCCGCTAAAAACGGAGCAATACCGGCGTTTTTTGTT
1 AAAACGCCGCTAAAAACGGAGCATTAGCGGCG-CTTTTGGT
* ** * * *
85434228 AAAACGCCACTAAAAATAGAGAAATAGCGGCGTTTTTGGT
1 AAAACGCCGCTAAAAACGGAGCATTAGCGGCGCTTTTGGT
**
85434268 AAAACGCCGCTAAAAAAACAAAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCT--AAAAACGGAGCATTAGCGGCGCTTTTGGT
**
85434310 AAAACGCCGCTAAAAGTTGGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAA-ACGGAGCATTAGCGGCGCTTTTGGT
* *
85434351 AAAACGCCGCTAAAAGCTGGAGCATTAGCAGCGCTTTT-GT
1 AAAACGCCGCTAAAAAC-GGAGCATTAGCGGCGCTTTTGGT
* *
85434391 AAAACGCCGCTAAAATCCGGAGCATTAGCGGCGCTTTTTGT
1 AAAACGCCGCTAAAA-ACGGAGCATTAGCGGCGCTTTTGGT
85434432 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
85434447 GTCATATAAC
Statistics
Matches: 192, Mismatches: 21, Indels: 12
0.85 0.09 0.05
Matches are distributed among these distances:
40 57 0.30
41 100 0.52
42 35 0.18
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.22
Consensus pattern (40 bp):
AAAACGCCGCTAAAAACGGAGCATTAGCGGCGCTTTTGGT
Found at i:85434421 original size:81 final size:78
Alignment explanation
Indices: 85434187--85434446 Score: 304
Period size: 81 Copynumber: 3.2 Consensus size: 78
85434177 CGTTTTACCA
* * * * * * *
85434187 AAAACGCCGCTAAAAACGGAGCAATACCGGCGTTTTTTGTTAAAACGCCACTAAAAATAGAGAAA
1 AAAACGCCGCTAAAAACGGAGCATTAGCGGCG-CTTTTG-TAAAACGCCGCT-AAAATGGAGCAT
*
85434252 TAGCGGCGTTTTTGGT
63 TAGCGGCGCTTTTGGT
**
85434268 AAAACGCCGCTAAAAAAACAAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTTGGAGC
1 AAAACGCCGCT--AAAAACGGAGCATTAGCGGCGCTTTT-GTAAAACGCCGCTAAAA--TGGAGC
85434333 ATTAGCGGCGCTTTTGGT
61 ATTAGCGGCGCTTTTGGT
* *
85434351 AAAACGCCGCTAAAAGCTGGAGCATTAGCAGCGCTTTTGTAAAACGCCGCTAAAATCCGGAGCAT
1 AAAACGCCGCTAAAAAC-GGAGCATTAGCGGCGCTTTTGTAAAACGCCGCTAAAAT--GGAGCAT
*
85434416 TAGCGGCGCTTTTTGT
63 TAGCGGCGCTTTTGGT
85434432 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
85434447 GTCATATAAC
Statistics
Matches: 156, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
79 1 0.01
81 74 0.47
82 32 0.21
83 49 0.31
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.22
Consensus pattern (78 bp):
AAAACGCCGCTAAAAACGGAGCATTAGCGGCGCTTTTGTAAAACGCCGCTAAAATGGAGCATTAG
CGGCGCTTTTGGT
Found at i:85434813 original size:21 final size:20
Alignment explanation
Indices: 85434776--85434818 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
85434766 ATTATAGTTT
85434776 AGGGTTTACGTTATATGGTTA
1 AGGGTTTACGTT-TATGGTTA
*
85434797 AGGGTTTAATGTTTATGAGTTA
1 AGGGTTT-ACGTTTATG-GTTA
85434819 CTATTTTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (20 bp):
AGGGTTTACGTTTATGGTTA
Found at i:85434872 original size:14 final size:15
Alignment explanation
Indices: 85434853--85434920 Score: 65
Period size: 14 Copynumber: 4.8 Consensus size: 15
85434843 GTTTAAGTGT
85434853 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
85434867 GGTTTAAGGTTTA--
1 GGTTTAAGGGTTAGG
*
85434880 GGTGTAAGGGGTTAGG
1 GGTTTAA-GGGTTAGG
*
85434896 GG-TTAAGGGTTAAG
1 GGTTTAAGGGTTAGG
85434910 GG-TTAAGGGTT
1 GGTTTAAGGGTT
85434921 CATGATTCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
13 6 0.13
14 34 0.76
15 3 0.07
16 2 0.04
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.34
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:85434878 original size:32 final size:32
Alignment explanation
Indices: 85434823--85434884 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
85434813 GAGTTACTAT
* *
85434823 TTTAAGGTTTAGGGATTATGGTTTAAGTGTGG
1 TTTAAGGGTTAGGGATTAAGGTTTAAGTGTGG
* * *
85434855 TTTAAGGGTTGGGGTTTAAGGTTTAGGTGT
1 TTTAAGGGTTAGGGATTAAGGTTTAAGTGT
85434885 AAGGGGTTAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (32 bp):
TTTAAGGGTTAGGGATTAAGGTTTAAGTGTGG
Found at i:85434918 original size:7 final size:7
Alignment explanation
Indices: 85434888--85434920 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
85434878 TAGGTGTAAG
*
85434888 GGGTTAG
1 GGGTTAA
85434895 GGGTTAA
1 GGGTTAA
85434902 GGGTTAA
1 GGGTTAA
85434909 GGGTTAA
1 GGGTTAA
85434916 GGGTT
1 GGGTT
85434921 CATGATTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.21, C:0.00, G:0.48, T:0.30
Consensus pattern (7 bp):
GGGTTAA
Found at i:85435492 original size:41 final size:42
Alignment explanation
Indices: 85435447--85435534 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 42
85435437 AATTAAAATT
85435447 AAAATTGAGCAATAGTGGCG-TTTTTAG-GTAAAACGCCGCAA
1 AAAATTGAGCAATAGTGGCGTTTTTTAGTG-AAAACGCCGCAA
*
85435488 AAAATTGAGCTATAGTGGCGTTTTTTAGTGAAAACGCCGCAA
1 AAAATTGAGCAATAGTGGCGTTTTTTAGTGAAAACGCCGCAA
85435530 AAAAT
1 AAAAT
85435535 CTAAAAATTA
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
41 19 0.43
42 24 0.55
43 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (42 bp):
AAAATTGAGCAATAGTGGCGTTTTTTAGTGAAAACGCCGCAA
Found at i:85440295 original size:21 final size:21
Alignment explanation
Indices: 85440269--85440316 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
85440259 TCAACTTAGA
*
85440269 GCGGAGGCAGTAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
85440290 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
85440311 GCGGAG
1 GCGGAG
85440317 TAGAACAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.17, G:0.58, T:0.02
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:85440765 original size:42 final size:43
Alignment explanation
Indices: 85440613--85440837 Score: 337
Period size: 43 Copynumber: 5.3 Consensus size: 43
85440603 GGGCAAATTC
* *
85440613 GCGGCGTTTTTTAAAAAAGCGCCGCAAAAAGTCCCGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCCGGTCTTTA
* * *
85440656 GCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCCGATCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCCGGTCTTTA
*
85440699 GAGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCCGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCCGGTCTTTA
* *
85440742 GAGGCGTTTTTT-AAAAAGCGCCGCTAAAGGTCCCGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCCGGTCTTTA
* * *
85440784 GCGGC-ATTTTTATAAAAGCGCCGCGAAAGGTCCTGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCCGGTCTTTA
85440826 GCGGCGTTTTTT
1 GCGGCGTTTTTT
85440838 TCGAAAAAAA
Statistics
Matches: 167, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
41 5 0.03
42 65 0.39
43 97 0.58
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (43 bp):
GCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCCGGTCTTTA
Found at i:85441296 original size:16 final size:17
Alignment explanation
Indices: 85441255--85441290 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
85441245 AAAATTAAGT
*
85441255 TTAGACCCATTTTTGGC
1 TTAGACCCATTTTTAGC
85441272 TTAGACCCATTTTTAGC
1 TTAGACCCATTTTTAGC
85441289 TT
1 TT
85441291 GGCCCACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.44
Consensus pattern (17 bp):
TTAGACCCATTTTTAGC
Found at i:85442153 original size:2 final size:2
Alignment explanation
Indices: 85442146--85442182 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
85442136 ATTATTAATT
85442146 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85442183 TAACACACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:85442496 original size:22 final size:22
Alignment explanation
Indices: 85442468--85442512 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
85442458 TTCAATTTGG
85442468 TCCTAATTCTAATATATATATA
1 TCCTAATTCTAATATATATATA
85442490 TCCTAATTCTAATATATATATA
1 TCCTAATTCTAATATATATATA
85442512 T
1 T
85442513 ATATATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (22 bp):
TCCTAATTCTAATATATATATA
Found at i:85448422 original size:2 final size:2
Alignment explanation
Indices: 85448415--85448443 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
85448405 GAAACACTTT
85448415 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85448444 CACACATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:85450511 original size:45 final size:45
Alignment explanation
Indices: 85450450--85450806 Score: 201
Period size: 45 Copynumber: 7.8 Consensus size: 45
85450440 GATTTATAGC
* * *
85450450 TTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCTATA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATA
* *
85450495 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAA-AGCTTG-T-T-
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTGCTATA
* * * * * **
85450537 TT-GACCTGCTCTACTGCAACTTCAGAGAGATAGGATCTGTAATTTATA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-T--GCTATA
* * * * *
85450585 GCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGGTTTGCTATC
1 --TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATA
* * * * **
85450632 TTCAGTCTACTCCACTGTAATTTCAGGGAGATAAGGCTTG-T-T-
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATA
* * * * * * **
85450674 TT-GACCTACTCTACTGCAACTTCAGAGAGATAGGATCTGTAATTTATA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-T--GCTATA
* * *
85450722 GCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATC
1 --TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATA
* * *
85450769 TTCAGTCTGCTTCACTGCAACTTCAGGGGGATAAGATT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
85450807 AATGGTTGCG
Statistics
Matches: 230, Mismatches: 60, Indels: 44
0.69 0.18 0.13
Matches are distributed among these distances:
41 49 0.21
42 7 0.03
43 4 0.02
44 3 0.01
45 98 0.43
46 2 0.01
47 8 0.03
49 2 0.01
50 6 0.03
51 51 0.22
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (45 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATA
Found at i:85450608 original size:137 final size:137
Alignment explanation
Indices: 85450364--85450803 Score: 668
Period size: 137 Copynumber: 3.2 Consensus size: 137
85450354 CTCCAGTCCA
* * * *
85450364 CTCCACTGCAACTTCAGGGAGATAAGGCTTGTAATTTTAACCTGATCCACTGTAACTTCA-AGAA
1 CTCCACTGCAACTTCAGGGAGATAAGGCTTG---TTTTGACCTGCTCTACTGCAACTTCAGAG-A
** *
85450428 GATGAGG-TCTGCGATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCT
62 GAT-AGGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCT
*
85450492 ATATTCAGTCTG
126 ATCTTCAGTCTG
*
85450504 CTCCACTGCAACTTCAGGGAGATAAAGCTTGTTTTGACCTGCTCTACTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAGAGAGATA
* *
85450569 GGATCTGTAATTTATAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGGTTTGCTATCTT
66 GGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTT
*
85450634 CAGTCTA
131 CAGTCTG
* * *
85450641 CTCCACTGTAATTTCAGGGAGATAAGGCTTGTTTTGACCTACTCTACTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAGAGAGATA
85450706 GGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTT
66 GGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTT
85450771 CAGTCTG
131 CAGTCTG
* *
85450778 CTTCACTGCAACTTCAGGGGGATAAG
1 CTCCACTGCAACTTCAGGGAGATAAG
85450804 ATTAATGGTT
Statistics
Matches: 275, Mismatches: 23, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
136 3 0.01
137 240 0.87
138 2 0.01
140 30 0.11
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (137 bp):
CTCCACTGCAACTTCAGGGAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAGAGAGATA
GGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTT
CAGTCTG
Found at i:85450939 original size:274 final size:274
Alignment explanation
Indices: 85450363--85450939 Score: 584
Period size: 274 Copynumber: 2.1 Consensus size: 274
85450353 ACTCCAGTCC
* *
85450363 ACTCCACTGCAACTTCAGGGAGATAAGGCTTGTAATTTTAACCTGATCCACTGTAACTTCAAGAA
1 ACTCAACTGCAACTTCAGGGAGATAAGGCTTG--ATTTTAACCTGATCCACTGCAACTTCAAGAA
*
85450428 GATGAGGTCTGCGATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCTA
64 GATGAGGTCTGCAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCTA
** * *
85450493 TATTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAGCTTGTTTTGACCTGCTCTACTGCAACT
129 TATTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAGCTTGTTGCGACCTCCCCTACTGCAACT
* * * * *
85450558 TCAGAGAGATAGGATCTGTAATTTATAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGG
194 TCAGAGAGATAAGA-CTGTAATATATAGATTCAATCCGTACCACTACAACTTCAGGGAAATAAGG
* * *
85450623 TTTGCTATCTTCAGTCT
258 TTTACTAGCTTCAATCT
* * * * *
85450640 ACTCCACTGTAATTTCAGGGAGATAAGGCTTG-TTTTGACCT-ACTCTACTGCAACTTC-AGAGA
1 ACTCAACTGCAACTTCAGGGAGATAAGGCTTGATTTTAACCTGA-TCCACTGCAACTTCAAGA-A
* *
85450702 GAT-AGGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCT
64 GATGAGG-TCTGCAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCT
* * * * *
85450766 ATCTTCAGTCTGCTTCACTGCAACTTCAGGGGGAT-AAGATTAATGGTTGCGATCTACCCCT-CT
128 ATATTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAG-CT--T-GTTGCGACCT-CCCCTACT
* * * ** * *
85450829 GCAACTTCAGGGAGTTAAGA-T-TCATCATATAGATTTGATCCG-ACCTGCTGCAACTTCAGAGG
188 GCAACTTCAGAGAGATAAGACTGTAAT-ATATAGATTCAATCCGTACC-ACTACAACTTCAG-GG
* * *
85450891 -TAT-AGGATTTAC-AGCTTTAATTT
250 AAATAAGG-TTTACTAGCTTCAATCT
* *
85450914 GCTCAACTGCAACTTCAGAGAGATAA
1 ACTCAACTGCAACTTCAGGGAGATAA
85450940 TATTCTCTAT
Statistics
Matches: 248, Mismatches: 40, Indels: 27
0.79 0.13 0.09
Matches are distributed among these distances:
273 10 0.04
274 147 0.59
275 29 0.12
276 3 0.01
277 56 0.23
278 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (274 bp):
ACTCAACTGCAACTTCAGGGAGATAAGGCTTGATTTTAACCTGATCCACTGCAACTTCAAGAAGA
TGAGGTCTGCAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGCTATA
TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAGCTTGTTGCGACCTCCCCTACTGCAACTTC
AGAGAGATAAGACTGTAATATATAGATTCAATCCGTACCACTACAACTTCAGGGAAATAAGGTTT
ACTAGCTTCAATCT
Found at i:85460234 original size:32 final size:32
Alignment explanation
Indices: 85460198--85460294 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
85460188 TGTATGCATT
85460198 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
85460230 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
85460262 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
85460294 T
1 T
85460295 GATAAGCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:85461808 original size:26 final size:26
Alignment explanation
Indices: 85461779--85461831 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
85461769 TTTACAGTTT
85461779 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
85461805 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
85461831 T
1 T
85461832 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:85466027 original size:32 final size:32
Alignment explanation
Indices: 85465991--85466083 Score: 177
Period size: 32 Copynumber: 2.9 Consensus size: 32
85465981 TGCATTTTAC
85465991 CATTTTAATAGTTAATGGATGATGGGCATTAG
1 CATTTTAATAGTTAATGGATGATGGGCATTAG
*
85466023 CATTTTAATAGTTAATGAATGATGGGCATTAG
1 CATTTTAATAGTTAATGGATGATGGGCATTAG
85466055 CATTTTAATAGTTAATGGATGATGGGCAT
1 CATTTTAATAGTTAATGGATGATGGGCAT
85466084 GATAAGCATT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (32 bp):
CATTTTAATAGTTAATGGATGATGGGCATTAG
Found at i:85467597 original size:26 final size:26
Alignment explanation
Indices: 85467568--85467620 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
85467558 TTTACAATTT
85467568 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
85467594 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
85467620 T
1 T
85467621 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:85471845 original size:2 final size:2
Alignment explanation
Indices: 85471838--85471863 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
85471828 GAAACACTTT
85471838 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
85471864 ATAGATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:85473914 original size:39 final size:39
Alignment explanation
Indices: 85473871--85473949 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
85473861 ACGTAGGCAA
85473871 TATGGATGAAATGAAAGATGCAATGCATGGATAAAAATT
1 TATGGATGAAATGAAAGATGCAATGCATGGATAAAAATT
85473910 TATGGATGAAATGAAAGATGCAATGCATGGATAAAAATT
1 TATGGATGAAATGAAAGATGCAATGCATGGATAAAAATT
85473949 T
1 T
85473950 TGTATGATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.46, C:0.05, G:0.23, T:0.27
Consensus pattern (39 bp):
TATGGATGAAATGAAAGATGCAATGCATGGATAAAAATT
Found at i:85475704 original size:9 final size:9
Alignment explanation
Indices: 85475690--85475715 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
85475680 TAATGAAATA
85475690 GATCGTTTT
1 GATCGTTTT
85475699 GATCGTTTT
1 GATCGTTTT
85475708 GATCGTTT
1 GATCGTTT
85475716 CACCTTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.23, T:0.54
Consensus pattern (9 bp):
GATCGTTTT
Found at i:85482370 original size:32 final size:32
Alignment explanation
Indices: 85482329--85482425 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
85482319 AATGCTTATC
*
85482329 ATGCCCATCATCCATTAACTATTAAAATGTTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
85482361 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
85482393 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
85482425 A
1 A
85482426 AATGCATACA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:85488159 original size:32 final size:32
Alignment explanation
Indices: 85488118--85488214 Score: 167
Period size: 32 Copynumber: 3.0 Consensus size: 32
85488108 AATGCTTATC
*
85488118 ATGCCCATCATCCATTAACTATTAAAATGTTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
* *
85488150 ATGCCCATCATTCGTTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
85488182 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
85488214 A
1 A
85488215 AATGCATACA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:85489708 original size:19 final size:19
Alignment explanation
Indices: 85489684--85489723 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
85489674 AAAAAAAAAC
85489684 TTAAAACCTAGTAATGAAA
1 TTAAAACCTAGTAATGAAA
85489703 TTAAAACCTAGTAATGAAA
1 TTAAAACCTAGTAATGAAA
85489722 TT
1 TT
85489724 TAGAAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (19 bp):
TTAAAACCTAGTAATGAAA
Found at i:85493164 original size:2 final size:2
Alignment explanation
Indices: 85493157--85493186 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
85493147 TCTGCTCACA
85493157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85493187 TGTTCTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85493719 original size:16 final size:18
Alignment explanation
Indices: 85493698--85493740 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
85493688 TTTTTATTAC
85493698 AATTTATATA-CT-AATA
1 AATTTATATATCTAAATA
*
85493714 AATTTATAATATTTAAATA
1 AATTTAT-ATATCTAAATA
85493733 AATTTATA
1 AATTTATA
85493741 AAATATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.30
17 3 0.13
18 2 0.09
19 11 0.48
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTTATATATCTAAATA
Found at i:85497897 original size:4 final size:4
Alignment explanation
Indices: 85497888--85497944 Score: 59
Period size: 4 Copynumber: 15.0 Consensus size: 4
85497878 ATGTACATGC
* *
85497888 AATG AATG AATG AATG AATG AATG ACA-- AATG AAT- ATTG AATA AATG
1 AATG AATG AATG AATG AATG AATG A-ATG AATG AATG AATG AATG AATG
85497934 -ATG AATG AATG
1 AATG AATG AATG
85497945 TTAGTCATGA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
2 1 0.02
3 6 0.14
4 36 0.82
5 1 0.02
ACGTcount: A:0.51, C:0.02, G:0.21, T:0.26
Consensus pattern (4 bp):
AATG
Found at i:85497933 original size:22 final size:23
Alignment explanation
Indices: 85497892--85497944 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
85497882 ACATGCAATG
*
85497892 AATGAATGAATGAATGAATGACA
1 AATGAATGAATGAATAAATGACA
* **
85497915 AATGAAT-ATTGAATAAATGATG
1 AATGAATGAATGAATAAATGACA
85497937 AATGAATG
1 AATGAATG
85497945 TTAGTCATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.51, C:0.02, G:0.21, T:0.26
Consensus pattern (23 bp):
AATGAATGAATGAATAAATGACA
Found at i:85501866 original size:32 final size:33
Alignment explanation
Indices: 85501821--85501888 Score: 120
Period size: 32 Copynumber: 2.1 Consensus size: 33
85501811 TAATTGGGCC
*
85501821 ATTAGTTTGGGTTTGGGTATTTGGTTGAGTTTA
1 ATTAGGTTGGGTTTGGGTATTTGGTTGAGTTTA
85501854 ATTAGGTT-GGTTTGGGTATTTGGTTGAGTTTA
1 ATTAGGTTGGGTTTGGGTATTTGGTTGAGTTTA
85501886 ATT
1 ATT
85501889 GTTTAGGTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 27 0.79
33 7 0.21
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.51
Consensus pattern (33 bp):
ATTAGGTTGGGTTTGGGTATTTGGTTGAGTTTA
Found at i:85502100 original size:12 final size:12
Alignment explanation
Indices: 85502083--85502107 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85502073 AAGTGCATAG
85502083 AACAAAATCTTT
1 AACAAAATCTTT
85502095 AACAAAATCTTT
1 AACAAAATCTTT
85502107 A
1 A
85502108 TTAACTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (12 bp):
AACAAAATCTTT
Found at i:85505108 original size:26 final size:26
Alignment explanation
Indices: 85505079--85505128 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
85505069 TACAGTTTTA
85505079 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
85505105 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
85505129 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:85506729 original size:12 final size:12
Alignment explanation
Indices: 85506712--85506742 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
85506702 ACTCGGGGAA
85506712 GAGGCCGTGGTC
1 GAGGCCGTGGTC
85506724 GAGGCCGTGGTC
1 GAGGCCGTGGTC
85506736 GAGGCCG
1 GAGGCCG
85506743 AGGTAGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:85511602 original size:26 final size:26
Alignment explanation
Indices: 85511573--85511639 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
85511563 TGGTACAAAT
*
85511573 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
85511599 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
85511625 TGATAATGGGTTAGG
1 TGATAATGGGTTAGG
85511640 GTTAAATTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:85514902 original size:64 final size:64
Alignment explanation
Indices: 85514829--85515039 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
85514819 CTGGGCCAGA
*
85514829 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
85514893 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
85514955 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
85514966 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
*
85515030 ACCCATTTCA
1 GCCCATTTCA
85515040 AAATACATGC
Statistics
Matches: 102, Mismatches: 28, Indels: 34
0.62 0.17 0.21
Matches are distributed among these distances:
63 9 0.09
64 24 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:85515041 original size:137 final size:137
Alignment explanation
Indices: 85514795--85515081 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
85514785 TATTGGGCCT
**
85514795 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
85514860 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGACCCATTTCAAAATACATGCAACATCAGTAAA
85514925 CATATGC
131 CATATGC
85514932 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85514997 AGCCCCTTATTCAGATAACAGTATGGCCCATAGACCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGACCCATTTCAAAATACATGCAACATCAGTAAA
85515062 CATATGC
131 CATATGC
85515069 AAGCCCATTTGGG
1 AAGCCCATTTGGG
85515082 AGACTACTCA
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGACCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:85515365 original size:25 final size:27
Alignment explanation
Indices: 85515328--85515380 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
85515318 TCAAACATGC
85515328 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
85515354 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
85515380 A
1 A
85515381 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:85516899 original size:26 final size:26
Alignment explanation
Indices: 85516863--85516998 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
85516853 CATGATATTC
85516863 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
85516889 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
85516915 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
85516941 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
85516967 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
85516993 TTATCA
1 TTATCA
85516999 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:85518356 original size:2 final size:2
Alignment explanation
Indices: 85518349--85518381 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
85518339 ACTTGTTTAC
85518349 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
85518382 CCAAACCAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:85519000 original size:6 final size:6
Alignment explanation
Indices: 85518989--85519016 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
85518979 CCTATTAACA
85518989 GGACTC GGACTC GGACTC GGACTC GGAC
1 GGACTC GGACTC GGACTC GGACTC GGAC
85519017 GGATACACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.32, G:0.36, T:0.14
Consensus pattern (6 bp):
GGACTC
Found at i:85520062 original size:15 final size:15
Alignment explanation
Indices: 85520025--85520078 Score: 83
Period size: 15 Copynumber: 3.6 Consensus size: 15
85520015 TGTCGTGAGC
*
85520025 TTCTTCTTCTTTTCCT
1 TTCTT-TTCTTTTTCT
85520041 TTC-TTTCTTTTTCT
1 TTCTTTTCTTTTTCT
85520055 TTCTTTTCTTTTTCT
1 TTCTTTTCTTTTTCT
85520070 TTCTTTTCT
1 TTCTTTTCT
85520079 AATTTCCATG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
14 12 0.33
15 21 0.58
16 3 0.08
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TTCTTTTCTTTTTCT
Found at i:85520153 original size:3 final size:3
Alignment explanation
Indices: 85520145--85520199 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
85520135 TTTTCATTTA
85520145 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
85520193 ATT ATT A
1 ATT ATT A
85520200 ACTTTATAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:85528196 original size:18 final size:18
Alignment explanation
Indices: 85528173--85528214 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
85528163 TATTTTTTCA
85528173 AAAAATTCAAAAA-TATAT
1 AAAAATT-AAAAATTATAT
85528191 AAAAATTAAAAATTATAT
1 AAAAATTAAAAATTATAT
85528209 AAAAAT
1 AAAAAT
85528215 CATTTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAAATTAAAAATTATAT
Done.