Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 283 of 335
Found at i:85531235 original size:16 final size:16
Alignment explanation
Indices: 85531213--85531250 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
85531203 GGTAGAGTGG
85531213 AAAAAGAAT-GGAAAA
1 AAAAAGAATAGGAAAA
85531228 AGAAAAGAATAGGGAAAA
1 A-AAAAGAATA-GGAAAA
85531246 AAAAA
1 AAAAA
85531251 AAGAAAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.05
16 8 0.40
17 4 0.20
18 7 0.35
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (16 bp):
AAAAAGAATAGGAAAA
Found at i:85531255 original size:19 final size:16
Alignment explanation
Indices: 85531213--85531251 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
85531203 GGTAGAGTGG
85531213 AAAAAGAATGGAAAAA
1 AAAAAGAATGGAAAAA
*
85531229 GAAAAGAATAGGGAAAAA
1 AAAAAGAAT--GGAAAAA
85531247 AAAAA
1 AAAAA
85531252 AGAAAATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (16 bp):
AAAAAGAATGGAAAAA
Found at i:85531879 original size:16 final size:17
Alignment explanation
Indices: 85531848--85531920 Score: 76
Period size: 18 Copynumber: 4.2 Consensus size: 17
85531838 ATATTCAATT
*
85531848 TATTTATATATTATATC
1 TATTTATATATTATATA
*
85531865 TATTT-TATTTTATATA
1 TATTTATATATTATATA
* *
85531881 TATTCTAAATATTTTATA
1 TATT-TATATATTATATA
*
85531899 TATTTATATATATTTATA
1 TATTTATATAT-TATATA
85531917 TATT
1 TATT
85531921 ATTATTTCTA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
16 13 0.28
17 12 0.26
18 22 0.47
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTTATATATTATATA
Found at i:85531893 original size:20 final size:19
Alignment explanation
Indices: 85531870--85531920 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
85531860 ATATCTATTT
*
85531870 TATTTTATATATATTCTAAA
1 TATTTTATATAT-TTATAAA
*
85531890 TATTTTATATATTTATATA
1 TATTTTATATATTTATAAA
85531909 TA-TTTATATATT
1 TATTTTATATATT
85531921 ATTATTTCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 10 0.34
19 7 0.24
20 12 0.41
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTTTATATATTTATAAA
Found at i:85531932 original size:20 final size:20
Alignment explanation
Indices: 85531834--85531933 Score: 51
Period size: 20 Copynumber: 4.7 Consensus size: 20
85531824 ATAAATTAAA
* *
85531834 TATTATATTCAATTTATTTAT
1 TATTAT-TTCTATTTATATAT
* *
85531855 ATATTATATCTATTT-TATTT
1 -TATTATTTCTATTTATATAT
*
85531875 TATATATATTCTAAATATTTTATA-
1 TAT-TAT-TTCT--AT-TTATATAT
* *
85531899 TATTTATATATATTTATATAT
1 TA-TTATTTCTATTTATATAT
85531920 TATTATTTCTATTT
1 TATTATTTCTATTT
85531934 TTTTGTATAC
Statistics
Matches: 59, Mismatches: 11, Indels: 18
0.67 0.12 0.20
Matches are distributed among these distances:
19 3 0.05
20 22 0.37
21 13 0.22
22 6 0.10
23 4 0.07
24 7 0.12
25 4 0.07
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTATTTCTATTTATATAT
Found at i:85541315 original size:2 final size:2
Alignment explanation
Indices: 85541308--85541356 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
85541298 TTCTAGTCTG
*
85541308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85541350 AT AT AT A
1 AT AT AT A
85541357 CACACATATG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:85542721 original size:90 final size:93
Alignment explanation
Indices: 85542541--85542726 Score: 225
Period size: 90 Copynumber: 2.0 Consensus size: 93
85542531 ATTATATTTG
* * * * *
85542541 TCAGAATATGGGGATAAAATTCAATTTTCTTATAATTTGCTTGATGACCACTTACTAATCACATC
1 TCAGAATATGGGGATAAAATTCAATTCTCTTAGAA-TTGCTTGATAACCACTTACCAATCACATA
85542606 TGCATAATTTTTAGATTCATAATATTAAA
65 TGCATAATTTTTAGATTCATAATATTAAA
* * * * *
85542635 TCAGAATGTGGGGATAAAATTCGATTCTCTTAGAA-T-C-TGATAATCACTTGCCAATTACATAT
1 TCAGAATATGGGGATAAAATTCAATTCTCTTAGAATTGCTTGATAACCACTTACCAATCACATAT
* * *
85542697 GTATAATTTTTGGATTCCTAATATTAAA
66 GCATAATTTTTAGATTCATAATATTAAA
85542725 TC
1 TC
85542727 CCTATTCGTA
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
90 46 0.58
91 1 0.01
92 1 0.01
94 31 0.39
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (93 bp):
TCAGAATATGGGGATAAAATTCAATTCTCTTAGAATTGCTTGATAACCACTTACCAATCACATAT
GCATAATTTTTAGATTCATAATATTAAA
Found at i:85546584 original size:18 final size:18
Alignment explanation
Indices: 85546563--85546604 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
85546553 TTTATAAAGA
85546563 AAATATATATAAT-AATAT
1 AAATA-ATATAATAAATAT
*
85546581 AAATAATATGATAAATAT
1 AAATAATATAATAAATAT
85546599 AAATAA
1 AAATAA
85546605 AAATATATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
AAATAATATAATAAATAT
Found at i:85548246 original size:44 final size:44
Alignment explanation
Indices: 85548191--85548830 Score: 784
Period size: 44 Copynumber: 14.5 Consensus size: 44
85548181 CAATCTACTT
*
85548191 TCTGACAATACAGAGACACCAAATCTG-CTATCTTCGATCTGCTC
1 TCTGACAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTC
* * *
85548235 TCTGGCAATACAGAGACGCCAAACCTGTTATCTTCGATCTGCTC
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
* * *
85548279 TCTGACAATACAGAAACGCCAAATTTGTCATCTTCGATCTACTC
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
* * *
85548323 TCTGACAATATAGA-AGCGTCAAATCTGTAATCTTCGATCTGCTC
1 TCTGACAATACAGAGA-CGCCAAATCTGTCATCTTCGATCTGCTC
* * * * * *
85548367 TCTGCCCATACAGAGATGTCAAATCTATCATCTTCGATCTGTTC
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
85548411 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
* *
85548455 TCTTACAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
* * *
85548499 TCTGACAATACAGAGATGCCAAATCTG-CTATCTTTGATATGCTC
1 TCTGACAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTC
* * *
85548543 TCTGACAATACAGAGACGCCAAATCTATCATCTTCAATCTACTC
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
* *
85548587 TCTGACAATTCAGAGACGCCAAACCTGTCATCTTCGATCTGCTC
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
* * * *
85548631 TCTGAGAATACAGAGATGTCAAATCTG-CTATCTTTGATCTGCTC
1 TCTGACAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTC
* * *
85548675 TCTGTCAATACAGAGATGCCAAATCTGTCATCTTCAATCTGCTC
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
* * * * *
85548719 TATGTCAATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTC
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
* * * * * ** *
85548763 TCCGTCAATACAGAGATGCCAAATCTATTATCTTTAATCTGCTA
1 TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
* *
85548807 TCCGTCAATACAGAGACGCCAAAT
1 TCTGACAATACAGAGACGCCAAAT
85548831 GTCACCGGTA
Statistics
Matches: 522, Mismatches: 67, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
43 3 0.01
44 516 0.99
45 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (44 bp):
TCTGACAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
Found at i:85554095 original size:39 final size:39
Alignment explanation
Indices: 85554044--85554226 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
85554034 AATGTTCGAG
*
85554044 TGATATCTGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
85554083 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
85554122 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
85554161 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
85554201 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
85554227 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 87 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:85565071 original size:21 final size:21
Alignment explanation
Indices: 85565036--85565087 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
85565026 ATTTATAAAG
*
85565036 AAAATATATATAATA-ATATA
1 AAAATATATATAATACAAATA
85565056 AATAATATGATA-AATACAAATA
1 AA-AATAT-ATATAATACAAATA
85565078 AAAATATATA
1 AAAATATATA
85565088 CCATTTTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
20 5 0.18
21 14 0.50
22 9 0.32
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAATATATATAATACAAATA
Found at i:85565133 original size:2 final size:2
Alignment explanation
Indices: 85565126--85565152 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
85565116 GGGATTTAAA
85565126 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
85565153 AAGGATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:85574606 original size:10 final size:10
Alignment explanation
Indices: 85574577--85574620 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
85574567 TAACCAATTA
85574577 AAATAATAAT
1 AAATAATAAT
85574587 -AATAATAAT
1 AAATAATAAT
*
85574596 AAATAAAAAT
1 AAATAATAAT
*
85574606 AAATAATTAT
1 AAATAATAAT
85574616 AAATA
1 AAATA
85574621 TTAACTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
9 9 0.30
10 21 0.70
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
AAATAATAAT
Found at i:85577839 original size:21 final size:22
Alignment explanation
Indices: 85577801--85577844 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
85577791 GGCCATTTAA
* *
85577801 TTTGTATTTTAGGCCTTGTTAT
1 TTTGAATTTTAGGCCTTGGTAT
*
85577823 TTTGAATTTT-GGGCTTGGTAT
1 TTTGAATTTTAGGCCTTGGTAT
85577844 T
1 T
85577845 ATTATGGACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.14, C:0.07, G:0.23, T:0.57
Consensus pattern (22 bp):
TTTGAATTTTAGGCCTTGGTAT
Found at i:85579130 original size:17 final size:17
Alignment explanation
Indices: 85579108--85579141 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
85579098 CCCGTTAAAA
85579108 GTAAAAATCTCTAATTT
1 GTAAAAATCTCTAATTT
85579125 GTAAAAATCTCTAATTT
1 GTAAAAATCTCTAATTT
85579142 AAGTTTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
GTAAAAATCTCTAATTT
Found at i:85582049 original size:11 final size:11
Alignment explanation
Indices: 85582033--85582058 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
85582023 ATTAAAAAGC
85582033 AAAAGCTTCCA
1 AAAAGCTTCCA
85582044 AAAAGCTTCCA
1 AAAAGCTTCCA
85582055 AAAA
1 AAAA
85582059 TTATTTGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.23, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAAGCTTCCA
Found at i:85586261 original size:44 final size:44
Alignment explanation
Indices: 85586126--85586357 Score: 177
Period size: 44 Copynumber: 5.3 Consensus size: 44
85586116 GCTTGTTACC
*
85586126 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATTTGCTCCA
1 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCA
* * ** * ** * ** *
85586170 -TACAACTTAGGGAGACAA-GATCTACAATCTTTGGCCTGTTACC-
1 CTACTACTTAGGGGGTTAAGGCTC-ACTGTCTTCGATCTGCT-CCA
* * *
85586213 CTACTACTTCGGGGGTTAAGGCTCACTGTCTTTGATTTGCTCCA
1 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCA
* * * ** ** *
85586257 CTACTGCTTAGGGGGATAA-GATCTACAATCTTCGGCCTGTTACC-
1 CTACTACTTAGGGGGTTAAGGCTC-ACTGTCTTCGATCTGCT-CCA
85586301 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCA
1 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCA
*
85586345 CTACTGCTTAGGG
1 CTACTACTTAGGG
85586358 AGATAATATC
Statistics
Matches: 135, Mismatches: 44, Indels: 18
0.69 0.22 0.09
Matches are distributed among these distances:
42 3 0.02
43 31 0.23
44 93 0.69
45 8 0.06
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (44 bp):
CTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCA
Found at i:85586308 original size:88 final size:88
Alignment explanation
Indices: 85586066--85586368 Score: 419
Period size: 88 Copynumber: 3.4 Consensus size: 88
85586056 AGGATTGTGA
* ** * * ** * * *
85586066 CTTCGATCTGCTCCACTACAACATCAGGGAGATAAGATTTGTAATTTTCAGCTTGTTACCCTACT
1 CTTCGATTTGCTCCACTACTGC-TTAGGGAGATAAGATCTACAATCTTCGGCCTGTTACCCTACT
85586131 ACTTAGGGGGTTAAGGCTCACTGT
65 ACTTAGGGGGTTAAGGCTCACTGT
** * *
85586155 CTTCGATTTGCTCCA-TACAACTTAGGGAGACAAGATCTACAATCTTTGGCCTGTTACCCTACTA
1 CTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGGCCTGTTACCCTACTA
*
85586219 CTTCGGGGGTTAAGGCTCACTGT
66 CTTAGGGGGTTAAGGCTCACTGT
* *
85586242 CTTTGATTTGCTCCACTACTGCTTAGGGGGATAAGATCTACAATCTTCGGCCTGTTACCCTACTA
1 CTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGGCCTGTTACCCTACTA
85586307 CTTAGGGGGTTAAGGCTCACTGT
66 CTTAGGGGGTTAAGGCTCACTGT
* *
85586330 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAATATCT
1 CTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCT
85586369 GTGAATTCAC
Statistics
Matches: 191, Mismatches: 22, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
87 70 0.37
88 107 0.56
89 14 0.07
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (88 bp):
CTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGGCCTGTTACCCTACTA
CTTAGGGGGTTAAGGCTCACTGT
Found at i:85587210 original size:53 final size:54
Alignment explanation
Indices: 85587142--85587301 Score: 155
Period size: 53 Copynumber: 2.9 Consensus size: 54
85587132 AAACCCCTTT
*
85587142 GGTCTCAAAGTGCCCTTTACGGGTTTTCACCTTAGCCTCTCCATTTTTTTTA-A-
1 GGTCTCAAAGCGCCCTTTACGGGTTTTCACCTT-GCCTCTCCATTTTTTTTATAC
* * * **
85587195 GGTCTCAAAGCGCCCTATATGGGTTTTCACCTTGGTCTCTTTATTTTATTTTATTTTTTAC
1 GGTCTCAAAGCGCCCTTTACGGGTTTTCACCTT-GCCTCTCCATTTT-TTTTA-----TAC
* *
85587256 AGTCTCAAAGCGCCCTTTACGGGTTTTCACCTTGCCTTTCC-TTTTT
1 GGTCTCAAAGCGCCCTTTACGGGTTTTCACCTTGCCTCTCCATTTTT
85587302 AGGTAAAATA
Statistics
Matches: 85, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
53 40 0.47
54 5 0.06
58 1 0.01
59 4 0.05
60 5 0.06
61 30 0.35
ACGTcount: A:0.16, C:0.25, G:0.15, T:0.44
Consensus pattern (54 bp):
GGTCTCAAAGCGCCCTTTACGGGTTTTCACCTTGCCTCTCCATTTTTTTTATAC
Found at i:85598267 original size:129 final size:131
Alignment explanation
Indices: 85598020--85598268 Score: 287
Period size: 129 Copynumber: 1.9 Consensus size: 131
85598010 ATATAAGTAC
* *
85598020 AATTCTAAAGGAATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAGCACGATAGGGCAC
1 AATTCTAAAGGAATATTCGATTATTTCGAACAAACAAGAAAATGCAACCCAGCACGATAGGGCAC
* * * * * *
85598085 GATTCCTTGAATTTCCAAACATCGAACATTGCCTTCGTTTCAAGGAATTTTCAAAGTACGGATGA
66 GAATCCTCGAATTCCCAAACAACGAACATTACCTTCGTTTCAAGGAATCTTCAAAGTACGGATGA
85598150 A
131 A
* *
85598151 AATTC-AAAGGAATATTTGATTATTTCG-ACAAAC-AGAAAAT-CAAAACCCAGCAC-AGTTGGG
1 AATTCTAAAGGAATATTCGATTATTTCGAACAAACAAGAAAATGC--AACCCAGCACGA-TAGGG
* * *
85598211 CACGAATCCTCGAGTTCCCAAACAAC-AACTATTACCTTTGTTT-TAGTGAATCTTCAAA
63 CACGAATCCTCGAATTCCCAAACAACGAAC-ATTACCTTCGTTTCAAG-GAATCTTCAAA
85598269 TAAACAGTTG
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
127 1 0.01
128 12 0.12
129 62 0.62
130 20 0.20
131 5 0.05
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.27
Consensus pattern (131 bp):
AATTCTAAAGGAATATTCGATTATTTCGAACAAACAAGAAAATGCAACCCAGCACGATAGGGCAC
GAATCCTCGAATTCCCAAACAACGAACATTACCTTCGTTTCAAGGAATCTTCAAAGTACGGATGA
A
Found at i:85603408 original size:2 final size:2
Alignment explanation
Indices: 85603403--85603427 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
85603393 TATGATTTAC
85603403 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
85603428 TTATCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:85608054 original size:25 final size:27
Alignment explanation
Indices: 85608017--85608069 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
85608007 TGAAACATGC
85608017 ATTTAGGTCAATTT-TAC-CCTAGGGGT
1 ATTTAGGTCAATTTAT-CTCCTAGGGGT
*
85608043 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTATCTCCTAGGGGT
85608069 A
1 A
85608070 AAGCTGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTATCTCCTAGGGGT
Found at i:85618845 original size:61 final size:62
Alignment explanation
Indices: 85618740--85618860 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 62
85618730 CTCTAGCTCT
85618740 ATTTAGGCAATAATGCTCTATTTTTTATTCTAATACTCACCACTCCCGCTCCTCCCTTCTTC
1 ATTTAGGCAATAATGCTCTATTTTTTATTCTAATACTCACCACTCCCGCTCCTCCCTTCTTC
* *
85618802 ATTTAGGCAATAGTGCTCTA-TTTTTATTCTAATACTCACCACTCCTGCTCCTCCCTTCT
1 ATTTAGGCAATAATGCTCTATTTTTTATTCTAATACTCACCACTCCCGCTCCTCCCTTCT
85618861 CCTTTGGATG
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
61 38 0.67
62 19 0.33
ACGTcount: A:0.21, C:0.31, G:0.07, T:0.40
Consensus pattern (62 bp):
ATTTAGGCAATAATGCTCTATTTTTTATTCTAATACTCACCACTCCCGCTCCTCCCTTCTTC
Found at i:85622654 original size:19 final size:17
Alignment explanation
Indices: 85622627--85622676 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 17
85622617 CAGTTCATAA
85622627 CAATCATTTATCAAATAT
1 CAATCATTTAT-AAATAT
*
85622645 CATGTCATTTCAATAAATAT
1 CA-ATCATTT--ATAAATAT
85622665 CAATCATTTATA
1 CAATCATTTATA
85622677 TTCAATATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
17 3 0.11
18 2 0.07
19 12 0.44
20 8 0.30
21 2 0.07
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (17 bp):
CAATCATTTATAAATAT
Found at i:85626719 original size:61 final size:63
Alignment explanation
Indices: 85626586--85626719 Score: 170
Period size: 60 Copynumber: 2.2 Consensus size: 63
85626576 ACTCGGCCTA
*
85626586 AGCCCTATT-CAGAAATCAGAGCTATCTGGGCCTTAGCCCATATCAATATTAATCTGGGCCAT
1 AGCCCTATTACAGAAATCAGAGCTATCTGGGCCTTAGCCCATATCAATATCAATCTGGGCCAT
* * * * *
85626648 AGCCC-CTTACAG-TATCAGAG-TATACTGGGCC-TAGCCTATATCAGTATCAATCTGGGCCGT
1 AGCCCTATTACAGAAATCAGAGCTAT-CTGGGCCTTAGCCCATATCAATATCAATCTGGGCCAT
85626708 AGCCCTATTACA
1 AGCCCTATTACA
85626720 AGTCGAGATA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
60 33 0.53
61 21 0.34
62 8 0.13
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (63 bp):
AGCCCTATTACAGAAATCAGAGCTATCTGGGCCTTAGCCCATATCAATATCAATCTGGGCCAT
Found at i:85626737 original size:60 final size:59
Alignment explanation
Indices: 85626600--85626748 Score: 160
Period size: 60 Copynumber: 2.5 Consensus size: 59
85626590 CTATTCAGAA
* *
85626600 ATCAGAGCTAT-CTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAG-TATACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
* * *
85626660 TATCAGAGTATACTGGGCCTAGCCTATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-
1 -ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAG
* *
85626720 AGTC-GAGATATATTGGGCCTTGCCCATAT
1 A-TCAGAG-TATACTGGGCCTAGCCCATAT
85626749 TAACACAGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
59 4 0.05
60 53 0.70
61 19 0.25
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
Found at i:85627419 original size:16 final size:16
Alignment explanation
Indices: 85627398--85627428 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85627388 CACAAATGCC
85627398 GGCTTTTCGGCTTTTT
1 GGCTTTTCGGCTTTTT
*
85627414 GGCTTTTTGGCTTTT
1 GGCTTTTCGGCTTTT
85627429 GCCGATCTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.26, T:0.58
Consensus pattern (16 bp):
GGCTTTTCGGCTTTTT
Found at i:85629308 original size:2 final size:2
Alignment explanation
Indices: 85629301--85629347 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
85629291 ACAATACTTT
85629301 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
85629343 TA TA T
1 TA TA T
85629348 TCCTATCTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:85629504 original size:19 final size:18
Alignment explanation
Indices: 85629467--85629510 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
85629457 ATACATACAG
85629467 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
85629484 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
85629503 TACTAATT
1 TAATAATT
85629511 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:85638406 original size:20 final size:20
Alignment explanation
Indices: 85638383--85638421 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
85638373 CATTTCTATT
*
85638383 CGTATAAATTGTAATTCATC
1 CGTATAAATAGTAATTCATC
*
85638403 CGTATCAATAGTAATTCAT
1 CGTATAAATAGTAATTCAT
85638422 TCATTTCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (20 bp):
CGTATAAATAGTAATTCATC
Found at i:85638430 original size:20 final size:20
Alignment explanation
Indices: 85638393--85638450 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
85638383 CGTATAAATT
* *
85638393 GTAATTCATCCGTATCAATA
1 GTAATTCATCCATTTCAATA
*
85638413 GTAATTCATTCATTTCAATA
1 GTAATTCATCCATTTCAATA
*
85638433 GTAACTCATCCATTTCAA
1 GTAATTCATCCATTTCAA
85638451 CATAGCTCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (20 bp):
GTAATTCATCCATTTCAATA
Found at i:85638648 original size:23 final size:23
Alignment explanation
Indices: 85638608--85638707 Score: 69
Period size: 23 Copynumber: 4.3 Consensus size: 23
85638598 AAGCTCCTCC
*
85638608 TGAGCTGATAAACAGTAAGCTCTAT
1 TGAGCT-A-AAACGGTAAGCTCTAT
85638633 TGAGCTAAAACGGTAAGCTCTAT
1 TGAGCTAAAACGGTAAGCTCTAT
** ** *
85638656 CAAG-TTGAATGGTAAGCTCT-T
1 TGAGCTAAAACGGTAAGCTCTAT
* * * *
85638677 TCGAGCTGAATCGGTAAGCTCCAA
1 T-GAGCTAAAACGGTAAGCTCTAT
85638701 TGAGCTA
1 TGAGCTA
85638708 TGGTGAGTCC
Statistics
Matches: 57, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
21 1 0.02
22 15 0.26
23 33 0.58
24 2 0.04
25 6 0.11
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (23 bp):
TGAGCTAAAACGGTAAGCTCTAT
Found at i:85638672 original size:22 final size:23
Alignment explanation
Indices: 85638622--85638697 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
85638612 CTGATAAACA
** * *
85638622 GTAAGCTCTATTGAGCTAAAACG
1 GTAAGCTCTATCAAGCTGAATCG
*
85638645 GTAAGCTCTATCAAGTTGAAT-G
1 GTAAGCTCTATCAAGCTGAATCG
* *
85638667 GTAAGCTCTTTCGAGCTGAATCG
1 GTAAGCTCTATCAAGCTGAATCG
85638690 GTAAGCTC
1 GTAAGCTC
85638698 CAATGAGCTA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 19 0.43
23 25 0.57
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (23 bp):
GTAAGCTCTATCAAGCTGAATCG
Found at i:85649454 original size:40 final size:40
Alignment explanation
Indices: 85649409--85649575 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
85649399 CGGAATATAA
85649409 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
85649449 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
85649489 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
85649529 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
85649568 CCGGATAT
1 CCGGATAT
85649576 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85649559 original size:80 final size:79
Alignment explanation
Indices: 85649425--85649573 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
85649415 ATAACCACGT
*
85649425 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
85649490 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
85649505 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
85649568 CCGGAT
64 CCGGAT
85649574 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:85656830 original size:28 final size:28
Alignment explanation
Indices: 85656785--85656881 Score: 178
Period size: 28 Copynumber: 3.5 Consensus size: 28
85656775 CTTAAAACCC
*
85656785 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
85656812 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
85656840 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
85656868 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
85656882 TGATCTACGC
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
27 7 0.10
28 61 0.90
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:85658738 original size:19 final size:18
Alignment explanation
Indices: 85658701--85658744 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
85658691 ATACATACAG
85658701 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
85658718 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
85658737 TACTAATT
1 TAATAATT
85658745 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:85663046 original size:44 final size:44
Alignment explanation
Indices: 85662988--85663282 Score: 172
Period size: 44 Copynumber: 6.7 Consensus size: 44
85662978 ATATGCAAAC
* * *
85662988 CTTATCTAT-CTGAAGTTGCAGTAGAGCGGGTTGAAGTAACAAGT
1 CTTATCT-TCCTGAAGTTGTAGTAGAGCAGATTGAAGTAACAAGT
* * **
85663032 CTTATCTTCCTGAAGTTGCAGTAGAGCAGACTGAAG-ATAGTAGAT
1 CTTATCTTCCTGAAGTTGTAGTAGAGCAGATTGAAGTA-ACAAG-T
* * * * * ** **
85663077 CTTGTCTCCCTGAGGTTGTAGTGGAGCAGATCGAAGCCACAAAC
1 CTTATCTTCCTGAAGTTGTAGTAGAGCAGATTGAAGTAACAAGT
* *
85663121 CTTATC-TCTCTGAAGTTGTAGTAGAGCGGGTTGATA-TAACAAGT
1 CTTATCTTC-CTGAAGTTGTAGTAGAGCAGATTGA-AGTAACAAGT
* * * * *
85663165 CTTATCTCCCTGAAGTTGTAGTGGAGCAAACTGAAGATAGC-AGAT
1 CTTATCTTCCTGAAGTTGTAGTAGAGCAGATTGAAG-TAACAAG-T
* * * * * **
85663210 CTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAA-T
1 CTTATCTTCCTGAAGTTGTAGTAGAGCAGATTGAAGTAACAAGT
* *
85663253 CCTTATC-TCTCTGAAGTTGCAGTTGAGCAG
1 -CTTATCTTC-CTGAAGTTGTAGTAGAGCAG
85663283 GATAAAAATA
Statistics
Matches: 192, Mismatches: 46, Indels: 26
0.73 0.17 0.10
Matches are distributed among these distances:
43 6 0.03
44 116 0.60
45 70 0.36
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (44 bp):
CTTATCTTCCTGAAGTTGTAGTAGAGCAGATTGAAGTAACAAGT
Found at i:85663104 original size:45 final size:45
Alignment explanation
Indices: 85663031--85663327 Score: 198
Period size: 45 Copynumber: 6.7 Consensus size: 45
85663021 AAGTAACAAG
* * * *
85663031 TCTTATCTTCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGTAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAGA
* * ** *
85663076 TCTTGTCTCCCTGAGGTTGTAGTGGAGCAGA-TCGAAGCCA-CAAA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-GAAGATAGCAGA
* * * * ** * *
85663120 CCTTATCTCTCTGAAGTTGTAGTAGAGCGGGTTG-ATATAACA-A
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAGA
*
85663163 GTCTTATCTCCCTGAAGTTGTAGTGGAGCAAACTGAAGATAGCAGA
1 -TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAGA
* * **
85663209 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGA-TCGAAGCCA-CA-A
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-GAAGATAGCAGA
* * * * * * *
85663252 TCCTTATCTCTCTGAAGTTGCAGTTGAGCAGGA-TAAAAATACACAAA
1 T-CTTATCTCCCTGAAGTTGTAGTGGAGCA-GACTGAAGATA-GCAGA
* *
85663299 CCTTA-CTCCCTGAAGTTGCAGTGGAGCAG
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAG
85663328 TTGCAGTAGA
Statistics
Matches: 197, Mismatches: 43, Indels: 25
0.74 0.16 0.09
Matches are distributed among these distances:
43 5 0.03
44 89 0.45
45 95 0.48
46 7 0.04
47 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAGA
Found at i:85663221 original size:133 final size:132
Alignment explanation
Indices: 85662983--85663326 Score: 492
Period size: 133 Copynumber: 2.6 Consensus size: 132
85662973 TAAAAATATG
* *
85662983 CAAACCTTATCTATCTGAAGTTGCAGTAGAGCGGGTTGAAGTAACAAGTCTTATCTTCCTGAAGT
1 CAAACCTTATCTCTCTGAAGTTGCAGTAGAGCGGGTTGAA-TAACAAGTCTTATCTCCCTGAAGT
* * * * *
85663048 TGCAGTAGAGCAGACTGAAGATAGTAGATCTTGTCTCCCTGAGGTTGTAGTGGAGCAGATCGAAG
65 TGCAGTGGAGCAAACTGAAGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAG
85663113 CCA
130 CCA
*
85663116 CAAACCTTATCTCTCTGAAGTTGTAGTAGAGCGGGTTGATATAACAAGTCTTATCTCCCTGAAGT
1 CAAACCTTATCTCTCTGAAGTTGCAGTAGAGCGGGTTGA-ATAACAAGTCTTATCTCCCTGAAGT
*
85663181 TGTAGTGGAGCAAACTGAAGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAG
65 TGCAGTGGAGCAAACTGAAGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAG
85663246 CCA
130 CCA
* * * ** **
85663249 CAATCCTTATCTCTCTGAAGTTGCAGTTGAGCAGGATAAAAATACACAAACCTTA-CTCCCTGAA
1 CAAACCTTATCTCTCTGAAGTTGCAGTAGAGC-GGGT-TGAATA-ACAAGTCTTATCTCCCTGAA
85663313 GTTGCAGTGGAGCA
63 GTTGCAGTGGAGCA
85663327 GTTGCAGTAG
Statistics
Matches: 189, Mismatches: 18, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
133 151 0.80
134 29 0.15
135 9 0.05
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (132 bp):
CAAACCTTATCTCTCTGAAGTTGCAGTAGAGCGGGTTGAATAACAAGTCTTATCTCCCTGAAGTT
GCAGTGGAGCAAACTGAAGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGC
CA
Found at i:85663331 original size:14 final size:14
Alignment explanation
Indices: 85663312--85663341 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
85663302 TACTCCCTGA
*
85663312 AGTTGCAGTGGAGC
1 AGTTGCAGTAGAGC
85663326 AGTTGCAGTAGAGC
1 AGTTGCAGTAGAGC
85663340 AG
1 AG
85663342 ATTAAGAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.40, T:0.20
Consensus pattern (14 bp):
AGTTGCAGTAGAGC
Found at i:85665115 original size:2 final size:2
Alignment explanation
Indices: 85665110--85665148 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
85665100 TATATATATA
* *
85665110 TG TG TG TG TG TG TA TG TG TG TG TG TG TG TG CG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
85665149 TTAAGACCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.03, C:0.03, G:0.46, T:0.49
Consensus pattern (2 bp):
TG
Found at i:85673610 original size:19 final size:19
Alignment explanation
Indices: 85673570--85673612 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
85673560 TAACATCGAT
*
85673570 ATTAATACTTCTAGCATCA
1 ATTAATACTCCTAGCATCA
*
85673589 ATTATATACTCCTGGCAT-A
1 ATTA-ATACTCCTAGCATCA
85673608 ATTAA
1 ATTAA
85673613 GCATACATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 9 0.43
20 11 0.52
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (19 bp):
ATTAATACTCCTAGCATCA
Found at i:85676883 original size:3 final size:3
Alignment explanation
Indices: 85676877--85676901 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
85676867 GAGGAGGAGG
85676877 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
85676902 AATTACTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:85678060 original size:3 final size:3
Alignment explanation
Indices: 85678052--85678155 Score: 190
Period size: 3 Copynumber: 34.7 Consensus size: 3
85678042 TCAGTGACTA
85678052 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
85678100 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTT TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
85678148 TTC TTC TT
1 TTC TTC TT
85678156 ATTCCTCTGT
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 97 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:85678240 original size:21 final size:21
Alignment explanation
Indices: 85678216--85678279 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
85678206 CAACGTGGCA
*
85678216 AGTTAACTGGCCACGTCAGCT
1 AGTTAACTTGCCACGTCAGCT
85678237 AGTTAACTTGCCACGTCAGCT
1 AGTTAACTTGCCACGTCAGCT
*
85678258 AGTTAAGTTGCCACGTCAGCT
1 AGTTAACTTGCCACGTCAGCT
85678279 A
1 A
85678280 TTCTGTTAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (21 bp):
AGTTAACTTGCCACGTCAGCT
Found at i:85678377 original size:30 final size:31
Alignment explanation
Indices: 85678308--85678380 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
85678298 GGGAACTGTT
* *
85678308 AGTTAGTGACTGTTTTGTCACTTTTTTATAA
1 AGTTAGTGACTGTTTTATCACTTTTTCATAA
* *
85678339 CGTTAGTGACTGTTTTATTA-TTTTTCA-AA
1 AGTTAGTGACTGTTTTATCACTTTTTCATAA
85678368 AGTTGAGTGACTG
1 AGTT-AGTGACTG
85678381 AAATGAAACC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 5 0.14
30 14 0.39
31 17 0.47
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (31 bp):
AGTTAGTGACTGTTTTATCACTTTTTCATAA
Found at i:85687085 original size:6 final size:6
Alignment explanation
Indices: 85687076--85687104 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
85687066 ATAATATTAA
85687076 TATTTT TATTTT TATTTT TATTTT TATTT
1 TATTTT TATTTT TATTTT TATTTT TATTT
85687105 AACATTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:85698366 original size:28 final size:27
Alignment explanation
Indices: 85698332--85698405 Score: 85
Period size: 28 Copynumber: 2.7 Consensus size: 27
85698322 ATTTTTTAAA
85698332 ATTTTAAAATTGAAAAAAAATGAAAAAT
1 ATTTTAAAATT-AAAAAAAATGAAAAAT
* * *
85698360 ATTTTAAAAATTAAAAAACATTAAAATT
1 ATTTT-AAAATTAAAAAAAATGAAAAAT
* *
85698388 ATTATAAAATTATAAAAA
1 ATTTTAAAATTAAAAAAA
85698406 TATTTTTTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
27 11 0.28
28 22 0.56
29 6 0.15
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (27 bp):
ATTTTAAAATTAAAAAAAATGAAAAAT
Found at i:85698405 original size:20 final size:19
Alignment explanation
Indices: 85698382--85698428 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
85698372 AAAAAACATT
85698382 AAAATTATTATAAAATTATA
1 AAAATTATTATAAAATT-TA
* *
85698402 AAAATATTTTTTAAAATTTA
1 AAAAT-TATTATAAAATTTA
85698422 AAAATTA
1 AAAATTA
85698429 ATTAAATGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 1 0.04
20 12 0.52
21 10 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATTATTATAAAATTTA
Found at i:85699873 original size:24 final size:26
Alignment explanation
Indices: 85699837--85699885 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
85699827 TCAAACATGC
85699837 ATTTAGGTCAATTTAAC-CCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
* *
85699862 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
85699886 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCCTAGGGT
Found at i:85701401 original size:26 final size:26
Alignment explanation
Indices: 85701365--85701472 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
85701355 ATGAAATTCC
*
85701365 TATCATGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAACCCAT
85701391 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
85701417 TATCATGG-ATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
85701442 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
85701468 TATCA
1 TATCA
85701473 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 23 0.30
26 53 0.70
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:85701442 original size:51 final size:52
Alignment explanation
Indices: 85701365--85701472 Score: 191
Period size: 51 Copynumber: 2.1 Consensus size: 52
85701355 ATGAAATTCC
85701365 TATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCAT
* *
85701417 TATCATGG-ATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCAT
85701468 TATCA
1 TATCA
85701473 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 46 0.85
52 8 0.15
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (52 bp):
TATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCAT
Found at i:85706903 original size:24 final size:26
Alignment explanation
Indices: 85706867--85706915 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
85706857 TCAAACATGC
85706867 ATTTAGGTCAATTTAAC-CCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
* *
85706892 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
85706916 GTAAAACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCCTAGGGT
Found at i:85708437 original size:26 final size:26
Alignment explanation
Indices: 85708401--85708509 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
85708391 ATGAAATCCC
*
85708401 TATCATGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAACCCAT
85708427 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
85708453 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
85708479 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
85708505 TATCA
1 TATCA
85708510 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:85709743 original size:28 final size:28
Alignment explanation
Indices: 85709698--85709766 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 28
85709688 TGAGCAGCCT
* * * *
85709698 AAATATCACAGCTTGTGTGAGCAAATTC
1 AAATATTACAACTCGTGTGAGAAAATTC
85709726 AAATATTACAACTCGTGTGAGAAAATTC
1 AAATATTACAACTCGTGTGAGAAAATTC
*
85709754 AAATATTATAACT
1 AAATATTACAACT
85709767 TGTATGGGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.30
Consensus pattern (28 bp):
AAATATTACAACTCGTGTGAGAAAATTC
Found at i:85709777 original size:28 final size:28
Alignment explanation
Indices: 85709715--85709779 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
85709705 ACAGCTTGTG
* *
85709715 TGAGCAAATTCAAATATTACAACTCGTG
1 TGAGAAAATTCAAATATTACAACTCGTA
* *
85709743 TGAGAAAATTCAAATATTATAACTTGTA
1 TGAGAAAATTCAAATATTACAACTCGTA
*
85709771 TGGGAAAAT
1 TGAGAAAAT
85709780 CAATCCCATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (28 bp):
TGAGAAAATTCAAATATTACAACTCGTA
Found at i:85712717 original size:26 final size:26
Alignment explanation
Indices: 85712688--85712743 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
85712678 TGATACAAAT
85712688 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85712714 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85712740 TGAT
1 TGAT
85712744 GGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85713911 original size:27 final size:27
Alignment explanation
Indices: 85713873--85713927 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
85713863 GTCAGCATAT
85713873 CGTCGCAAACAGGTGTGTAACTAACAC
1 CGTCGCAAACAGGTGTGTAACTAACAC
85713900 CGTCGCAAACAGGTGTGTAACTAACAC
1 CGTCGCAAACAGGTGTGTAACTAACAC
85713927 C
1 C
85713928 CTCTTTCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.27, G:0.22, T:0.18
Consensus pattern (27 bp):
CGTCGCAAACAGGTGTGTAACTAACAC
Found at i:85721067 original size:28 final size:28
Alignment explanation
Indices: 85721034--85721087 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
85721024 TGAGCAGCCT
85721034 AAATATCACAACTTGTGTGAGAAAATTC
1 AAATATCACAACTTGTGTGAGAAAATTC
* *
85721062 AAATATTATAACTTGTGTGAGAAAAT
1 AAATATCACAACTTGTGTGAGAAAAT
85721088 CAATCCCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.31
Consensus pattern (28 bp):
AAATATCACAACTTGTGTGAGAAAATTC
Found at i:85725171 original size:23 final size:24
Alignment explanation
Indices: 85725145--85725190 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
85725135 TTTTTTTTAG
* *
85725145 AATTTTTATATTTTTA-AAATATA
1 AATTTTGAAATTTTTATAAATATA
85725168 AATTTTGAAATTTTTATAAATAT
1 AATTTTGAAATTTTTATAAATAT
85725191 TTTGAGTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
AATTTTGAAATTTTTATAAATATA
Found at i:85725243 original size:22 final size:21
Alignment explanation
Indices: 85725201--85725241 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
85725191 TTTGAGTTTA
85725201 AAAATTATTTTAAATTTTTTG
1 AAAATTATTTTAAATTTTTTG
* *
85725222 AAAATTATTTTGACTTTTTT
1 AAAATTATTTTAAATTTTTT
85725242 TGTAAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (21 bp):
AAAATTATTTTAAATTTTTTG
Found at i:85727754 original size:24 final size:23
Alignment explanation
Indices: 85727707--85727754 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
85727697 GTTAATTTAT
85727707 ACTGAAACACGTCCTATAACATA
1 ACTGAAACACGTCCTATAACATA
* * *
85727730 ACTGAAAGCATGTCCTGTAAGATA
1 ACTGAAA-CACGTCCTATAACATA
85727754 A
1 A
85727755 ATTTCCACTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.23
Consensus pattern (23 bp):
ACTGAAACACGTCCTATAACATA
Found at i:85729406 original size:15 final size:14
Alignment explanation
Indices: 85729380--85729451 Score: 65
Period size: 15 Copynumber: 5.0 Consensus size: 14
85729370 TATTCTAATA
*
85729380 CTATTATTATTTAT
1 CTATTTTTATTTAT
85729394 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
85729409 CTATTTATATTTCAA
1 CTATTTTTATTT-AT
*
85729424 CTATTATTATATT-T
1 CTATTTTTAT-TTAT
*
85729438 CTATTTATATTTAT
1 CTATTTTTATTTAT
85729452 ATACTAATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
13 2 0.04
14 20 0.43
15 22 0.48
16 2 0.04
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.62
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:85729419 original size:29 final size:28
Alignment explanation
Indices: 85729387--85729451 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 28
85729377 ATACTATTAT
*
85729387 TATTTATCTAATTTTTAT-TTATCTATTTA
1 TATTTATCT-ATTATTATATT-TCTATTTA
*
85729416 TATTTCAACTATTATTATATTTCTATTTA
1 TATTT-ATCTATTATTATATTTCTATTTA
85729445 TATTTAT
1 TATTTAT
85729452 ATACTAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 1 0.03
29 25 0.81
30 5 0.16
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (28 bp):
TATTTATCTATTATTATATTTCTATTTA
Found at i:85729465 original size:29 final size:29
Alignment explanation
Indices: 85729408--85729468 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
85729398 TTTTTATTTA
*
85729408 TCTATTTATATTTCAACTATTATTATATT
1 TCTATTTATATTTCAACTAATATTATATT
*
85729437 TCTATTTATATTTATATACTAATATTAT-TT
1 TCTATTTATATTT-CA-ACTAATATTATATT
85729467 TC
1 TC
85729469 ATTATTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 13 0.46
30 5 0.18
31 10 0.36
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (29 bp):
TCTATTTATATTTCAACTAATATTATATT
Found at i:85731699 original size:19 final size:19
Alignment explanation
Indices: 85731658--85731699 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
85731648 TACTTTCTTT
*
85731658 TGCATTCATTCCATGCATT
1 TGCATTCATTCCATGCATG
*
85731677 TGCATTGCATTGCAT-CATG
1 TGCATT-CATTCCATGCATG
85731696 TGCA
1 TGCA
85731700 CTAAACTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (19 bp):
TGCATTCATTCCATGCATG
Found at i:85737798 original size:24 final size:24
Alignment explanation
Indices: 85737771--85737818 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
85737761 ATGATGAATA
*
85737771 AATTAAAAAATTCAATAAATTTAT
1 AATTAAAAAATTCAAAAAATTTAT
* * *
85737795 AATTATAATATTTAAAAAATTTAT
1 AATTAAAAAATTCAAAAAATTTAT
85737819 TTTTAAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (24 bp):
AATTAAAAAATTCAAAAAATTTAT
Found at i:85737879 original size:19 final size:19
Alignment explanation
Indices: 85737855--85737895 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
85737845 TAGATGCTCT
85737855 TATATTAAGAGTCGAATTA
1 TATATTAAGAGTCGAATTA
85737874 TATATTAAGAGTCGAATTA
1 TATATTAAGAGTCGAATTA
85737893 TAT
1 TAT
85737896 TTTGTCCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (19 bp):
TATATTAAGAGTCGAATTA
Found at i:85742806 original size:23 final size:23
Alignment explanation
Indices: 85742756--85742808 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
85742746 TTTAGCCTGG
*
85742756 ACCTAAATAAACCAAACCAATCA
1 ACCTAAATAAACCAAACCAACCA
* *
85742779 ACCTAAATAAACCAAGCCAGCCA
1 ACCTAAATAAACCAAACCAACCA
*
85742802 GCCTAAA
1 ACCTAAA
85742809 CAAAAAACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.51, C:0.32, G:0.06, T:0.11
Consensus pattern (23 bp):
ACCTAAATAAACCAAACCAACCA
Found at i:85743196 original size:43 final size:43
Alignment explanation
Indices: 85743148--85743289 Score: 193
Period size: 43 Copynumber: 3.3 Consensus size: 43
85743138 TTATTTAAAA
* *
85743148 AAACGCCACTAAAGACCATGACCTTTAGCGGCACTTTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
85743191 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTT-AC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * *
85743233 AAACGCCGCTACGAA-A-CA-AACCTTTAACGGCGCTTTTCTCAC
1 AAACGCCGCTA--AAGACCATGACCTTTAGCGGCGCTTTTTTCAC
85743275 AAACGCCGCTAAAGA
1 AAACGCCGCTAAAGA
85743290 ATATAGCTTT
Statistics
Matches: 90, Mismatches: 5, Indels: 10
0.86 0.05 0.10
Matches are distributed among these distances:
40 2 0.02
41 19 0.21
42 28 0.31
43 39 0.43
44 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
Found at i:85743300 original size:42 final size:41
Alignment explanation
Indices: 85743148--85743301 Score: 157
Period size: 42 Copynumber: 3.7 Consensus size: 41
85743138 TTATTTAAAA
* * * *
85743148 AAACGCCACTAAAGACCATGACCTTTAGCGGCACTTTTTTCAC
1 AAACGCCGCTAAAGAACAT-ACCTTTAACGGCGC-TTTTTCAC
* * *
85743191 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTAC
1 AAACGCCGCTAAAGAACAT-ACCTTTAACGGCGCTTTTTCAC
* *
85743233 AAACGCCGCT-ACGAAACAAACCTTTAACGGCGCTTTTCTCAC
1 AAACGCCGCTAAAG-AACATACCTTTAACGGCGCTTTT-TCAC
* *
85743275 AAACGCCGCTAAAGAATATAGCTTTAA
1 AAACGCCGCTAAAGAACATACCTTTAA
85743302 AAATATATTT
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
41 19 0.20
42 43 0.45
43 34 0.35
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.24
Consensus pattern (41 bp):
AAACGCCGCTAAAGAACATACCTTTAACGGCGCTTTTTCAC
Found at i:85747423 original size:15 final size:15
Alignment explanation
Indices: 85747405--85747465 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
85747395 CCATAAACAC
85747405 TAAACCCTTAAACCT
1 TAAACCCTTAAACCT
*
85747420 TAAACCCTTACACCT
1 TAAACCCTTAAACCT
*
85747435 TAAACTCC---AACCC
1 TAAAC-CCTTAAACCT
85747448 T-AACCCTTAAACCT
1 TAAACCCTTAAACCT
85747462 TAAA
1 TAAA
85747466 TCATAATCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
11 2 0.05
12 3 0.08
13 4 0.11
14 5 0.14
15 21 0.57
16 2 0.05
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (15 bp):
TAAACCCTTAAACCT
Found at i:85747546 original size:32 final size:32
Alignment explanation
Indices: 85747509--85747597 Score: 169
Period size: 32 Copynumber: 2.8 Consensus size: 32
85747499 CTTCAAATAC
*
85747509 TAGTTAACTCTTAAACCTTAAACCCTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCA
85747541 TAGTTAACTCATAAACCTTAAACCCTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCA
85747573 TAGTTAACTCATAAACCTTAAACCC
1 TAGTTAACTCATAAACCTTAAACCC
85747598 ATATATCTTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.42, C:0.28, G:0.03, T:0.27
Consensus pattern (32 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCA
Found at i:85747555 original size:18 final size:18
Alignment explanation
Indices: 85747534--85747589 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
85747524 CCTTAAACCC
85747534 TAAACCATAGTTAACTCA
1 TAAACCATAGTTAACTCA
* *
85747552 TAAACC-T--TAAAC-CC
1 TAAACCATAGTTAACTCA
85747566 TAAACCATAGTTAACTCA
1 TAAACCATAGTTAACTCA
85747584 TAAACC
1 TAAACC
85747590 TTAAACCCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 7 0.23
15 5 0.17
17 5 0.17
18 13 0.43
ACGTcount: A:0.45, C:0.27, G:0.04, T:0.25
Consensus pattern (18 bp):
TAAACCATAGTTAACTCA
Found at i:85747607 original size:15 final size:15
Alignment explanation
Indices: 85747520--85747624 Score: 81
Period size: 14 Copynumber: 6.8 Consensus size: 15
85747510 AGTTAACTCT
85747520 TAAACCTTAAACCC-
1 TAAACCTTAAACCCA
* *
85747534 TAAACCATAGTTAACTCA
1 TAAACC-T--TAAACCCA
85747552 TAAACCTTAAACCC-
1 TAAACCTTAAACCCA
* *
85747566 TAAACCATAGTTAACTCA
1 TAAACC-T--TAAACCCA
85747584 TAAACCTTAAACCCA
1 TAAACCTTAAACCCA
* *
85747599 TATATCTTAAA-CCA
1 TAAACCTTAAACCCA
85747613 TAAACCTTAAAC
1 TAAACCTTAAAC
85747625 TATAATGATA
Statistics
Matches: 70, Mismatches: 12, Indels: 17
0.71 0.12 0.17
Matches are distributed among these distances:
14 24 0.34
15 22 0.31
17 12 0.17
18 12 0.17
ACGTcount: A:0.45, C:0.28, G:0.02, T:0.26
Consensus pattern (15 bp):
TAAACCTTAAACCCA
Found at i:85747845 original size:41 final size:41
Alignment explanation
Indices: 85747788--85747923 Score: 202
Period size: 41 Copynumber: 3.3 Consensus size: 41
85747778 TTATATGACT
*
85747788 TTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* *
85747829 TTTAGCGGCGTTTTACCAAAAGCGTCGCTAATGCTCGGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * * *
85747870 TTTAACGGCGTTTTACCAAAAACGCCGCTAATGCTCT-ATT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
85747910 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
85747924 TTACTAAAAC
Statistics
Matches: 85, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 14 0.16
41 71 0.84
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:85747933 original size:41 final size:40
Alignment explanation
Indices: 85747788--85747949 Score: 191
Period size: 41 Copynumber: 4.0 Consensus size: 40
85747778 TTATATGACT
*
85747788 TTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTC
* *
85747829 TTTAGCGGCGTTTTACCAAAAGCGTCGCTAATGCTCGGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-TGTC
* * * *
85747870 TTTAACGGCGTTTTACCAAAAACGCCGCTAATGCTCTATT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTC
* **
85747910 TTTAGCGGCGTTTTTTACTAAAA-CGCCGCTGTTGCTCTGT
1 TTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTGT
85747950 GTTTTACAAT
Statistics
Matches: 104, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
40 10 0.10
41 84 0.81
42 10 0.10
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.33
Consensus pattern (40 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTC
Found at i:85749171 original size:28 final size:27
Alignment explanation
Indices: 85749138--85749207 Score: 88
Period size: 28 Copynumber: 2.6 Consensus size: 27
85749128 TATGTTGTTC
85749138 ATATTTGTATTTTTTTCGCTAGTTATTT
1 ATATTTGTATTTTTTTCGCTAGTTA-TT
** *
85749166 ATATTTGTACATTTTTCGCTCGTTATT
1 ATATTTGTATTTTTTTCGCTAGTTATT
*
85749193 -TATTTATATTTTTTT
1 ATATTTGTATTTTTTT
85749208 ACATATATAC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
26 12 0.33
27 2 0.06
28 22 0.61
ACGTcount: A:0.19, C:0.09, G:0.09, T:0.64
Consensus pattern (27 bp):
ATATTTGTATTTTTTTCGCTAGTTATT
Found at i:85749303 original size:3 final size:3
Alignment explanation
Indices: 85749290--85749357 Score: 120
Period size: 3 Copynumber: 23.0 Consensus size: 3
85749280 ATTACCTTAT
85749290 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
85749337 TTA TTA TTA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
85749358 CATTAGTATT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 60 0.97
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:85751906 original size:38 final size:38
Alignment explanation
Indices: 85751864--85751942 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
85751854 CTAAACAACC
*
85751864 ATAACTCTATATTCAATCATGATAATGTTTTTT-AAATT
1 ATAACTCTATATTCAATCAAGATAAT-TTTTTTAAAATT
85751902 ATAACTCTATATTCAATCAAGATAATTTTTTTAAAATT
1 ATAACTCTATATTCAATCAAGATAATTTTTTTAAAATT
85751940 ATA
1 ATA
85751943 TAAATATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
37 6 0.15
38 33 0.85
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.46
Consensus pattern (38 bp):
ATAACTCTATATTCAATCAAGATAATTTTTTTAAAATT
Found at i:85751950 original size:36 final size:38
Alignment explanation
Indices: 85751872--85751950 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 38
85751862 CCATAACTCT
* **
85751872 ATATTCAATCATGATAATGTTTTTTAAATTATAACTCT
1 ATATTCAATCAAGATAATGTTTTTTAAATTATAACTAA
85751910 ATATTCAATCAAGATAAT-TTTTTTAAAATTAT-A-TAA
1 ATATTCAATCAAGATAATGTTTTTT-AAATTATAACTAA
85751946 ATATT
1 ATATT
85751951 TTCTTTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 6 0.16
37 7 0.19
38 24 0.65
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.47
Consensus pattern (38 bp):
ATATTCAATCAAGATAATGTTTTTTAAATTATAACTAA
Found at i:85754237 original size:3 final size:3
Alignment explanation
Indices: 85754229--85754396 Score: 187
Period size: 3 Copynumber: 55.7 Consensus size: 3
85754219 AATTTAAAAT
85754229 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
85754277 TAA TAA TAA TAA TAA TAA TAA TACGC TAA TAA TGA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA
* * ** * * *
85754324 GAA TAA TGA T-A TGT TAA TAA TAA TAG GAA TAG TAA TAA -AGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* * *
85754368 TAG TAA TAA TAA TAA TAG TAA TAC TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
85754397 TTAAACTAAT
Statistics
Matches: 138, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
2 3 0.02
3 132 0.96
4 1 0.01
5 2 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:85760222 original size:24 final size:24
Alignment explanation
Indices: 85760195--85760265 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 24
85760185 TATATTCTAA
*
85760195 TTATATTTTATAAATAATTAATAT
1 TTATATTTTATAAATAATTAAAAT
* * *
85760219 TTAT-TACTTAAAAATATTTAAAAT
1 TTATAT-TTTATAAATAATTAAAAT
85760243 TTATATTTTAT--AT-ATTAAAAT
1 TTATATTTTATAAATAATTAAAAT
85760264 TT
1 TT
85760266 TAACAAGTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
21 9 0.24
22 2 0.05
23 1 0.03
24 25 0.66
25 1 0.03
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (24 bp):
TTATATTTTATAAATAATTAAAAT
Found at i:85763679 original size:32 final size:32
Alignment explanation
Indices: 85763638--85763701 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
85763628 TCTTCTCCGT
85763638 TTGTTTCTGTTGGGGATCAACCTGATTAAGCA
1 TTGTTTCTGTTGGGGATCAACCTGATTAAGCA
85763670 TTGTTTCTGTTGGGGATCAACCTGATTAAGCA
1 TTGTTTCTGTTGGGGATCAACCTGATTAAGCA
85763702 ACAAACAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.38
Consensus pattern (32 bp):
TTGTTTCTGTTGGGGATCAACCTGATTAAGCA
Found at i:85765987 original size:23 final size:25
Alignment explanation
Indices: 85765961--85766016 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 25
85765951 GCTTAACATA
85765961 AATGAACATGA-TATGT-AATTGAT
1 AATGAACATGATTATGTGAATTGAT
*
85765984 AATG-GCAT-ATTATGTGAATTGAT
1 AATGAACATGATTATGTGAATTGAT
*
85766007 GATGAA-ATGA
1 AATGAACATGA
85766017 AATGAGATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
21 1 0.04
22 8 0.31
23 16 0.62
24 1 0.04
ACGTcount: A:0.41, C:0.04, G:0.21, T:0.34
Consensus pattern (25 bp):
AATGAACATGATTATGTGAATTGAT
Found at i:85766030 original size:5 final size:5
Alignment explanation
Indices: 85766022--85766051 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
85766012 AATGAAATGA
85766022 GATAT GATAT GATAT GATAT GATAT -ATAT G
1 GATAT GATAT GATAT GATAT GATAT GATAT G
85766052 TGAATTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
GATAT
Found at i:85766038 original size:22 final size:23
Alignment explanation
Indices: 85766003--85766055 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
85765993 TTATGTGAAT
85766003 TGATGATGAAATGAAATGAGATA
1 TGATGATGAAATGAAATGAGATA
* * *
85766026 TGAT-ATGATATGATATGATATA
1 TGATGATGAAATGAAATGAGATA
85766048 T-ATG-TGAA
1 TGATGATGAA
85766056 TTGGTTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 5 0.20
22 16 0.64
23 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.34
Consensus pattern (23 bp):
TGATGATGAAATGAAATGAGATA
Found at i:85767500 original size:21 final size:22
Alignment explanation
Indices: 85767474--85767514 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
85767464 AATTTACAGA
*
85767474 AGAAGAAGATAG-AAAGAAAGG
1 AGAAGAAGAAAGAAAAGAAAGG
85767495 AGAAGAAGAAAGAAAAGAAA
1 AGAAGAAGAAAGAAAAGAAA
85767515 AGGTAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02
Consensus pattern (22 bp):
AGAAGAAGAAAGAAAAGAAAGG
Found at i:85774622 original size:20 final size:20
Alignment explanation
Indices: 85774597--85774655 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
85774587 TAAATATGGT
85774597 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
85774617 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
85774637 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
85774656 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:85774775 original size:47 final size:48
Alignment explanation
Indices: 85774706--85774824 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
85774696 GAGGAAGTGA
85774706 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGGCCCCAGTTATT
*
85774753 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
*
85774801 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85774825 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 1 0.02
47 43 0.65
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:85774800 original size:24 final size:24
Alignment explanation
Indices: 85774706--85774824 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
85774696 GAGGAAGTGA
*
85774706 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
85774730 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
85774753 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
85774777 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
85774801 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85774825 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.26
24 51 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:85775066 original size:38 final size:38
Alignment explanation
Indices: 85775015--85775108 Score: 161
Period size: 38 Copynumber: 2.4 Consensus size: 38
85775005 CGTTTACAGT
85775015 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
85775053 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
85775091 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
85775109 GCATGATTGA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
38 40 0.75
39 13 0.25
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:85782835 original size:25 final size:25
Alignment explanation
Indices: 85782806--85782853 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
85782796 TTATAATATG
* * *
85782806 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
85782831 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
85782854 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:85782922 original size:20 final size:20
Alignment explanation
Indices: 85782897--85782955 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
85782887 TAAATATGGT
85782897 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
85782917 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
85782937 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
85782956 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:85783047 original size:26 final size:27
Alignment explanation
Indices: 85783018--85783085 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 27
85783008 ATAGTGAGTC
85783018 CGCACACTTAGTGCTATAT-AAC-AACT
1 CGCACACTTAGTGCTA-ATGAACAAACT
*
85783044 CGCACACTTAGTGCTAATGATCAAACT
1 CGCACACTTAGTGCTAATGAACAAACT
85783071 CGCAACAC-TAGTGCT
1 CGC-ACACTTAGTGCT
85783086 GTACAAGTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
25 2 0.05
26 18 0.47
27 14 0.37
28 4 0.11
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTAATGAACAAACT
Found at i:85791044 original size:28 final size:27
Alignment explanation
Indices: 85790981--85791050 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
85790971 ATAGTGAGTC
85790981 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
85791008 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
85791036 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85791051 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:85793619 original size:2 final size:2
Alignment explanation
Indices: 85793612--85793643 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
85793602 AGTGCTAATT
85793612 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
85793644 CAAAACAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:85797522 original size:12 final size:12
Alignment explanation
Indices: 85797505--85797534 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
85797495 TACTAATGTA
85797505 TTTTTTTTTCTT
1 TTTTTTTTTCTT
85797517 TTTTTTTTTCTT
1 TTTTTTTTTCTT
85797529 TTTTTT
1 TTTTTT
85797535 GTTTGCAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (12 bp):
TTTTTTTTTCTT
Found at i:85806282 original size:3 final size:3
Alignment explanation
Indices: 85806274--85806305 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
85806264 ATAGTGGTCG
85806274 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
85806306 GAGAGGAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:85807009 original size:16 final size:16
Alignment explanation
Indices: 85806984--85807014 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85806974 CACCACTTGG
*
85806984 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
85807000 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
85807015 TCATAATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:85808800 original size:31 final size:31
Alignment explanation
Indices: 85808762--85808823 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
85808752 GGGCGTAGGC
85808762 CACCATATCAGTAAATCGAGCAGGTCTACGA
1 CACCATATCAGTAAATCGAGCAGGTCTACGA
85808793 CACCATATCAGTAAATCGAGCAGGTCTACGA
1 CACCATATCAGTAAATCGAGCAGGTCTACGA
85808824 ATTTCTCTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (31 bp):
CACCATATCAGTAAATCGAGCAGGTCTACGA
Found at i:85811813 original size:16 final size:16
Alignment explanation
Indices: 85811788--85811818 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85811778 CACCACTTGG
*
85811788 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
85811804 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
85811819 TTATAATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:85822230 original size:43 final size:42
Alignment explanation
Indices: 85822137--85822303 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 42
85822127 GATTACCGAG
* * *
85822137 ATGTGATTACATGTAAGACCATGTCTGGAACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGT
* * * *
85822179 ATTGTGATTACGTGTCAGACCATGTCTGGGACATTGGCACCGTT
1 A-TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCG-T
* * * * *
85822223 ATATGATTTCGTATAAGAGCC-TATCTGGGACAGTGGCATCGAT
1 ATGTGATTACATGTAAGA-CCATATCTGGGACATTGGCATCG-T
* *
85822266 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
85822304 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 9 0.09
43 89 0.87
44 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGT
Found at i:85824061 original size:9 final size:9
Alignment explanation
Indices: 85824044--85824077 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
85824034 AATTTATTTT
*
85824044 ATTATTTAA
1 ATTAATTAA
85824053 ATTAATTAA
1 ATTAATTAA
*
85824062 ATTAACTAA
1 ATTAATTAA
85824071 ATTAATT
1 ATTAATT
85824078 TCTCAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (9 bp):
ATTAATTAA
Found at i:85824094 original size:16 final size:18
Alignment explanation
Indices: 85824068--85824100 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
85824058 TTAAATTAAC
85824068 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
85824085 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
85824101 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:85830405 original size:19 final size:20
Alignment explanation
Indices: 85830381--85830426 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
85830371 CATCCAAACA
85830381 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
85830400 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
85830420 CCAGAAA
1 CCAGAAA
85830427 TCATTTTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:85830429 original size:14 final size:14
Alignment explanation
Indices: 85830410--85830447 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
85830400 CCAGAAAAGT
85830410 AAATCATTTTCCAG
1 AAATCATTTTCCAG
85830424 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
85830438 AAAACATTTT
1 AAATCATTTT
85830448 ACTGGCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:85837628 original size:75 final size:75
Alignment explanation
Indices: 85837505--85837654 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
85837495 TCTCTAAAAA
85837505 CACTCAATTTGCCCTAAATAACCAACCATATACTGGCTTTTAACAAAGCTTTCAAGAATTACGTT
1 CACTCAATTTGCCCTAAATAACCAACCATATACTGGCTTTTAACAAAGCTTTCAAGAATTACGTT
85837570 TTAAATTTGC
66 TTAAATTTGC
85837580 CACTCAATTTGCCCTAAATAACCAACCATATACTGGCTTTTAACAAAGCTTTCAAGAATTACGTT
1 CACTCAATTTGCCCTAAATAACCAACCATATACTGGCTTTTAACAAAGCTTTCAAGAATTACGTT
85837645 TTAAATTTGC
66 TTAAATTTGC
85837655 AGGTAATTTG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (75 bp):
CACTCAATTTGCCCTAAATAACCAACCATATACTGGCTTTTAACAAAGCTTTCAAGAATTACGTT
TTAAATTTGC
Found at i:85851779 original size:5 final size:4
Alignment explanation
Indices: 85851753--85851797 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
85851743 CTAAAAAGTT
* *
85851753 TAAA CAAA TAAA TAAA TAAAA TGAAA TAAA CAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA T-AAA T-AAA TAAA TAAA TAAA TAAA TAA
85851798 TATGAAATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
4 27 0.77
5 8 0.23
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (4 bp):
TAAA
Found at i:85851821 original size:26 final size:26
Alignment explanation
Indices: 85851753--85851806 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
85851743 CTAAAAAGTT
85851753 TAAACAAATAAATAAATAAAATGAAA
1 TAAACAAATAAATAAATAAAATGAAA
*
85851779 TAAACAAATAAATAAATAATATGAAA
1 TAAACAAATAAATAAATAAAATGAAA
85851805 TA
1 TA
85851807 TGACAAAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (26 bp):
TAAACAAATAAATAAATAAAATGAAA
Found at i:85851847 original size:3 final size:3
Alignment explanation
Indices: 85851841--85852245 Score: 196
Period size: 3 Copynumber: 133.3 Consensus size: 3
85851831 AATGAAACAG
* * * * * * *
85851841 TAA TAA TGA TAA TAC TAA TGA TAT TAA TAG TAG TAG TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
85851888 TAA TAA TAG TAA TAA TAA T-A TAC TAAA TAA TAG TAA TAA -AA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
* * * * * * * * *
85851932 CAA TAG TAA TAG TAA TTA CAA AAA TGA TAA TAG TAA TAA -AA TAA -GA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
85851978 TGA TAA TAA CAA TAA TCAA -AA TAA AAA TAG TAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
85852023 TAA TAA GACCA TAA TAA AAA GAA AAA GAAA TAA TAA CATG TAAA TAA
1 TAA TAA TA--A TAA TAA TAA TAA TAA -TAA TAA TAA TA-A T-AA TAA
85852070 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
85852118 TAA TAA TAA TGA CAA TAA TAGA AAA TAA TAA AAA CAA -ATA TAC TATG
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TA-A TAA TA-A
* ** * * * * *
85852165 TCGA TAA GGA TAA TAG TAG TAA TAG TAA TAA AAA CAA TAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
85852211 TAA -ATA TAA TAA TAGA AAA TAA TAA TAA AAA TAA T
1 TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA T
85852246 TAATTTGAAA
Statistics
Matches: 302, Mismatches: 79, Indels: 42
0.71 0.19 0.10
Matches are distributed among these distances:
2 13 0.04
3 270 0.89
4 16 0.05
5 3 0.01
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:85852232 original size:13 final size:13
Alignment explanation
Indices: 85852203--85852275 Score: 80
Period size: 13 Copynumber: 5.6 Consensus size: 13
85852193 TAAAAACAAT
85852203 AATAATAATA-AA
1 AATAATAATAGAA
*
85852215 TATAATAATAGAA
1 AATAATAATAGAA
85852228 AATAATAATA-AA
1 AATAATAATAGAA
*
85852240 AATAATTAATTTGAA
1 AATAA-TAA-TAGAA
85852255 AATAA-AATAGCAA
1 AATAATAATAG-AA
85852268 AATAATAA
1 AATAATAA
85852276 AAAAGGACTA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
12 18 0.35
13 23 0.45
14 3 0.06
15 7 0.14
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.27
Consensus pattern (13 bp):
AATAATAATAGAA
Found at i:85852244 original size:37 final size:38
Alignment explanation
Indices: 85852190--85852279 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 38
85852180 GTAGTAATAG
85852190 TAATAAAAACAATAA-TAATAAT-AAATATAATAATAG-AAAA
1 TAATAAAAA-AATAATTAAT--TGAAA-ATAA-AATAGCAAAA
85852230 TAATAATAAAAATAATTAATTTGAAAATAAAATAGCAAAA
1 TAATAA-AAAAATAATTAA-TTGAAAATAAAATAGCAAAA
85852270 TAATAAAAAA
1 TAATAAAAAA
85852280 GGACTAAATT
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
39 9 0.20
40 26 0.58
41 9 0.20
42 1 0.02
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.26
Consensus pattern (38 bp):
TAATAAAAAAATAATTAATTGAAAATAAAATAGCAAAA
Found at i:85853542 original size:12 final size:12
Alignment explanation
Indices: 85853525--85853550 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
85853515 AAAATAAGGC
85853525 TTTAGCGGCGTT
1 TTTAGCGGCGTT
85853537 TTTAGCGGCGTT
1 TTTAGCGGCGTT
85853549 TT
1 TT
85853551 ATCAATAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:85853650 original size:41 final size:40
Alignment explanation
Indices: 85853574--85853863 Score: 382
Period size: 41 Copynumber: 7.1 Consensus size: 40
85853564 GCAAAAATTG
* * *
85853574 TAAAACACAGAGCAATAGCGGCGCTTTAGCAAAAACGCCGC
1 TAAAAC-CAGAGCATTAGCGGCGCTTTTGCTAAAACGCCGC
* * * * *
85853615 TAAAAACTGAGCAATAGCGGCGTTTTCTGTTAAAACGCCGC
1 TAAAACCAGAGCATTAGCGGCGCTTT-TGCTAAAACGCCGC
* * *
85853656 TAAAAACAGAACATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAACCAGAGCATTAGCGGCGCTTTTGCTAAAACGCCGC
* *
85853696 TAAGACCAGAGCATTAGCAGCGCTTTTGCTAAAACGCCGC
1 TAAAACCAGAGCATTAGCGGCGCTTTTGCTAAAACGCCGC
* *
85853736 TAAAGACCAGAGCAATAGCGGCGCTTTTGCTAAAACGCTGC
1 TAAA-ACCAGAGCATTAGCGGCGCTTTTGCTAAAACGCCGC
* *
85853777 TAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAATGCCGC
1 TAAA-ACCAGAGCATTAGCGGCGCTTTTGCTAAAACGCCGC
85853818 TAAAGACCAGAGCATTAGCGGCGCTTTTGCTAAAACGCCGC
1 TAAA-ACCAGAGCATTAGCGGCGCTTTTGCTAAAACGCCGC
85853859 TAAAA
1 TAAAA
85853864 GTTATATAAC
Statistics
Matches: 221, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
40 70 0.32
41 151 0.68
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.20
Consensus pattern (40 bp):
TAAAACCAGAGCATTAGCGGCGCTTTTGCTAAAACGCCGC
Found at i:85853811 original size:82 final size:82
Alignment explanation
Indices: 85853581--85853862 Score: 390
Period size: 81 Copynumber: 3.5 Consensus size: 82
85853571 TTGTAAAACA
* * * * * * *
85853581 CAGAGCAATAGCGGCGCTTTAGCAAAAACGCCGCTAAA-AACTGAGCAATAGCGGCGTTTTCTGT
1 CAGAGCAATAGCGGCGCTTTTGCTAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTT-TGC
*
85853645 TAAAACGCCGCTAAA-AA
65 TAAAACGCCGCTAAAGAC
* * * *
85853662 CAGAACATTAGCGGCGCTTTTGGTAAAACGCCGCT-AAGACCAGAGCATTAGCAGCGCTTTTGCT
1 CAGAGCAATAGCGGCGCTTTTGCTAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGCT
85853726 AAAACGCCGCTAAAGAC
66 AAAACGCCGCTAAAGAC
* *
85853743 CAGAGCAATAGCGGCGCTTTTGCTAAAACGCTGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
1 CAGAGCAATAGCGGCGCTTTTGCTAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGCT
*
85853808 AAAATGCCGCTAAAGAC
66 AAAACGCCGCTAAAGAC
*
85853825 CAGAGCATTAGCGGCGCTTTTGCTAAAACGCCGCTAAA
1 CAGAGCAATAGCGGCGCTTTTGCTAAAACGCCGCTAAA
85853863 AGTTATATAA
Statistics
Matches: 177, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
80 19 0.11
81 79 0.45
82 79 0.45
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (82 bp):
CAGAGCAATAGCGGCGCTTTTGCTAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGCT
AAAACGCCGCTAAAGAC
Found at i:85854917 original size:18 final size:19
Alignment explanation
Indices: 85854894--85854932 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
85854884 AGATCTTTTT
85854894 TATTTTT-TATCAAAATAA
1 TATTTTTATATCAAAATAA
*
85854912 TATTTTTATATGAAAATAA
1 TATTTTTATATCAAAATAA
85854931 TA
1 TA
85854933 AATATGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
TATTTTTATATCAAAATAA
Found at i:85855575 original size:2 final size:2
Alignment explanation
Indices: 85855568--85855592 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
85855558 TAAGCAGTGC
85855568 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
85855593 GAATGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:85857635 original size:15 final size:15
Alignment explanation
Indices: 85857615--85857643 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
85857605 GGAGTAGACC
85857615 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
85857630 AGGTACGTTTTATT
1 AGGTACGTTTTATT
85857644 TCAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Done.