Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 285 of 335
Found at i:86075115 original size:17 final size:19
Alignment explanation
Indices: 86075093--86075167 Score: 95
Period size: 19 Copynumber: 4.2 Consensus size: 19
86075083 ATGGAAATAT
86075093 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
86075110 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
86075129 AATCTTAGATATGATAT--
1 AATCTTACATATGATATGC
*
86075146 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
86075165 AAT
1 AAT
86075168 ATTAGAAGAT
Statistics
Matches: 53, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
17 23 0.43
18 1 0.02
19 29 0.55
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:86075133 original size:36 final size:36
Alignment explanation
Indices: 86075093--86075167 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
86075083 ATGGAAATAT
86075093 AATCTT-CA-ATGATATGCAATCTTAGATATGATATGC
1 AATCTTACATATGATAT--AATCTTAGATATGATATGC
*
86075129 AATCTTAGATATGATATAATCTTAGATATGATATGC
1 AATCTTACATATGATATAATCTTAGATATGATATGC
86075165 AAT
1 AAT
86075168 ATTAGAAGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
36 28 0.78
37 1 0.03
38 7 0.19
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (36 bp):
AATCTTACATATGATATAATCTTAGATATGATATGC
Found at i:86075173 original size:36 final size:37
Alignment explanation
Indices: 86075101--86075173 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
86075091 ATAATCTTCA
*
86075101 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATAT-CAATCTTAGATATGATATGCAATATTAGAT
86075139 ATGATAT-AATCTTAGATATGATATGCAATATTAGA
1 ATGATATCAATCTTAGATATGATATGCAATATTAGA
86075174 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 27 0.79
38 7 0.21
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (37 bp):
ATGATATCAATCTTAGATATGATATGCAATATTAGAT
Found at i:86075177 original size:22 final size:23
Alignment explanation
Indices: 86075152--86075196 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
86075142 ATATAATCTT
86075152 AGATATGA-TATGCAATATTAGA
1 AGATATGATTATGCAATATTAGA
* *
86075174 AGATATGATTTTGTAATATTAGA
1 AGATATGATTATGCAATATTAGA
86075197 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.42, C:0.02, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATATTAGA
Found at i:86075180 original size:17 final size:19
Alignment explanation
Indices: 86075101--86075173 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
86075091 ATAATCTTCA
86075101 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86075120 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86075139 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
86075156 ATGATATGCAATATTAGA
1 ATGATATGCAATCTTAGA
86075174 AGATATGATT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 17 0.33
19 34 0.67
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:86075208 original size:23 final size:23
Alignment explanation
Indices: 86075165--86075207 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
86075155 TATGATATGC
*
86075165 AATATTAGAAGATATGATTTTGT
1 AATATTAGAAGATATAATTTTGT
*
86075188 AATATTAG-AGATTTAATTTT
1 AATATTAGAAGATATAATTTT
86075208 TAGATACCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.47
Consensus pattern (23 bp):
AATATTAGAAGATATAATTTTGT
Found at i:86075486 original size:18 final size:19
Alignment explanation
Indices: 86075463--86075499 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
86075453 TGTTTCCTTG
*
86075463 ATTTTTTTATAT-ATTTTA
1 ATTTTTTTAAATAATTTTA
86075481 ATTTTTTTAAATAATTTTA
1 ATTTTTTTAAATAATTTTA
86075500 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTTAAATAATTTTA
Found at i:86078477 original size:220 final size:220
Alignment explanation
Indices: 86078095--86078684 Score: 946
Period size: 220 Copynumber: 2.7 Consensus size: 220
86078085 CAGGCTAAAG
* * * * * * **
86078095 CATAGCAGATTTGACCTTCAGGTGTTTACGTTGAAGCGGATCCAAGATGATTTAACATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* * *
86078160 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAG
*
86078225 GCATAGCAGATCTAACCTTCGGATATCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATATCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
*
86078290 GCGTTGACAAGGAGCAGATCGAAGA
196 ACGTTGACAAGGAGCAGATCGAAGA
86078315 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* **
86078380 CTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTTGACCTAGAGCAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAG
* *
86078445 ACATAGCAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCCAAGATTATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATATCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
86078510 ACGTTGACAAGGAGCAGATCGAAGA
196 ACGTTGACAAGGAGCAGATCGAAGA
* *
86078535 TATAGCAGATTTAGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* * * *
86078600 CTGTCAGAGAACAAATCGAAGAAACAGATTTCGCATATCCATATTTGACGGGGAGCAGATAGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAG
* *
86078665 ACATAACAGATCTGACCTTC
131 ACATAGCAGATCTAACCTTC
86078685 ATTGAAGCAT
Statistics
Matches: 341, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
220 341 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (220 bp):
CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAG
ACATAGCAGATCTAACCTTCGGATATCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
ACGTTGACAAGGAGCAGATCGAAGA
Found at i:86078755 original size:78 final size:78
Alignment explanation
Indices: 86078641--86078920 Score: 445
Period size: 78 Copynumber: 3.6 Consensus size: 78
86078631 CGCATATCCA
* * *
86078641 TATTTGACGGGGAGCAGATAGAAGACATAACAGATCTGACCTTCATTGAAGCATATCCAAGATGA
1 TATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGA
86078706 TTTGGCATCTCTG
66 TTTGGCATCTCTG
* *
86078719 TATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGA
1 TATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGA
*
86078784 TTTGGCATCTCTA
66 TTTGGCATCTCTG
*
86078797 TATTAGACGAGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGAAGCAGATCCAAGATG
1 TATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGAAGCAGATCCAAGATG
86078861 ATTTGGCATCTCTG
65 ATTTGGCATCTCTG
** **
86078875 TATTAGATAGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCAT
1 TATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCAT
86078921 GTGTTTACAT
Statistics
Matches: 185, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 1 0.01
78 183 0.99
79 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
TATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGA
TTTGGCATCTCTG
Found at i:86079358 original size:19 final size:19
Alignment explanation
Indices: 86079334--86079374 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
86079324 TTAAATTGTT
*
86079334 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
86079353 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
86079372 TTA
1 TTA
86079375 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:86081815 original size:39 final size:39
Alignment explanation
Indices: 86081761--86081868 Score: 180
Period size: 39 Copynumber: 2.8 Consensus size: 39
86081751 TTATATGATT
*
86081761 TGGTGTTATATCCGGGCTAAGCCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
86081800 TGGTGTTATATCCGGGCTAAGCCCCAAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
86081839 TGGTGTTATATCCGGGCTAATCCCCGAAGG
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGG
86081869 GGCTAAGTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:86081873 original size:16 final size:16
Alignment explanation
Indices: 86081852--86081884 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
86081842 TGTTATATCC
86081852 GGGCTAA-TCCCCGAAG
1 GGGCTAAGT-CCCGAAG
86081868 GGGCTAAGTCCCGAAG
1 GGGCTAAGTCCCGAAG
86081884 G
1 G
86081885 CATTCGTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.24, C:0.27, G:0.36, T:0.12
Consensus pattern (16 bp):
GGGCTAAGTCCCGAAG
Found at i:86081898 original size:55 final size:55
Alignment explanation
Indices: 86081813--86081923 Score: 186
Period size: 55 Copynumber: 2.0 Consensus size: 55
86081803 TGTTATATCC
* *
86081813 GGGCTAAGCCCCAAAGGCATTCGTGTTGGTGTTATATCCGGGCTAATCCCCGAAG
1 GGGCTAAGCCCCAAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAG
* *
86081868 GGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAG
1 GGGCTAAGCCCCAAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAG
86081923 G
1 G
86081924 CATTTGTGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.23
Consensus pattern (55 bp):
GGGCTAAGCCCCAAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAG
Found at i:86081922 original size:39 final size:39
Alignment explanation
Indices: 86081868--86081950 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
86081858 ATCCCCGAAG
* *
86081868 GGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCC
1 GGGCTAAGCCCCGAAGGCATTCGTGCTGGTATTATATCC
* *
86081907 GGGCTAAGCCCCGAAGGCATTTGTGCTGGTATTATATTC
1 GGGCTAAGCCCCGAAGGCATTCGTGCTGGTATTATATCC
86081946 GGGCT
1 GGGCT
86081951 TAAAGTCCCG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.18, C:0.22, G:0.31, T:0.29
Consensus pattern (39 bp):
GGGCTAAGCCCCGAAGGCATTCGTGCTGGTATTATATCC
Found at i:86081942 original size:94 final size:94
Alignment explanation
Indices: 86081774--86081950 Score: 293
Period size: 94 Copynumber: 1.9 Consensus size: 94
86081764 TGTTATATCC
*
86081774 GGGCTAAGCCCTGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAAAGGCATTCGTGT
1 GGGCTAAGCCCTGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAAAGGCATTCGTGC
*
86081839 TGGTGTTATATCCGGGCTAATCCCCGAAG
66 TGGTATTATATCCGGGCTAATCCCCGAAG
* *
86081868 GGGCTAAGTCCC-GAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTG
1 GGGCTAAG-CCCTGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAAAGGCATTCGTG
*
86081932 CTGGTATTATATTCGGGCT
65 CTGGTATTATATCCGGGCT
86081951 TAAAGTCCCG
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 74 0.96
95 3 0.04
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (94 bp):
GGGCTAAGCCCTGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAAAGGCATTCGTGC
TGGTATTATATCCGGGCTAATCCCCGAAG
Found at i:86083071 original size:27 final size:26
Alignment explanation
Indices: 86083034--86083148 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
86083024 AGCATGGCTG
* **
86083034 CCAGAACAGATAATGTGACAGATTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
86083060 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
86083088 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
86083115 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
86083142 CCAGAAC
1 CCAGAAC
86083149 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 16 0.20
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86083093 original size:54 final size:54
Alignment explanation
Indices: 86083034--86083148 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
86083024 AGCATGGCTG
**
86083034 CCAGAACAGATA-ATGTGACAGATTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
86083088 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
86083142 CCAGAAC
1 CCAGAAC
86083149 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:86084799 original size:26 final size:26
Alignment explanation
Indices: 86084763--86084847 Score: 152
Period size: 26 Copynumber: 3.3 Consensus size: 26
86084753 CATGAAATTC
86084763 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86084789 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86084815 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
86084841 TTATCAT
1 TTATCAT
86084848 TGTATCAATT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86087449 original size:80 final size:80
Alignment explanation
Indices: 86087365--86087513 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
86087355 TATGGTAACC
* * * *
86087365 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
86087429 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
86087445 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
86087510 CCGG
66 CCGG
86087514 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:86087455 original size:40 final size:38
Alignment explanation
Indices: 86087406--86087513 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
86087396 ATCACGATTT
*
86087406 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
86087446 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
86087486 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
86087514 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:86096554 original size:80 final size:80
Alignment explanation
Indices: 86096470--86096618 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
86096460 TATGGTAACC
* * * *
86096470 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
86096534 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
86096550 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
86096615 CCGG
66 CCGG
86096619 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:86096560 original size:40 final size:38
Alignment explanation
Indices: 86096511--86096618 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
86096501 ATCACGATTT
*
86096511 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
86096551 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
86096591 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
86096619 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:86101247 original size:27 final size:26
Alignment explanation
Indices: 86101210--86101324 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
86101200 AGCATGGCTG
* *
86101210 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
86101236 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
86101264 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
86101291 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
86101318 CCAGAAC
1 CCAGAAC
86101325 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86101269 original size:54 final size:54
Alignment explanation
Indices: 86101210--86101324 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
86101200 AGCATGGCTG
*
86101210 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
86101264 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
86101318 CCAGAAC
1 CCAGAAC
86101325 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:86102979 original size:26 final size:26
Alignment explanation
Indices: 86102943--86103027 Score: 152
Period size: 26 Copynumber: 3.3 Consensus size: 26
86102933 CATGAAATTC
86102943 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86102969 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86102995 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
86103021 TTATCAT
1 TTATCAT
86103028 TGTATCAATT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86105233 original size:35 final size:35
Alignment explanation
Indices: 86105171--86105261 Score: 116
Period size: 35 Copynumber: 2.6 Consensus size: 35
86105161 TCATATGGAA
* *
86105171 ATATAATCTT-CAATGATATGCAATCTTAGATATG
1 ATATAATCTTAGAATGATATGCAATCTTAGATACG
86105205 ATATAATCTTAGATATGAT-TGCAATCTTAGATACG
1 ATATAATCTTAGA-ATGATATGCAATCTTAGATACG
86105240 ATATGCAATCTTAGAA-GATATG
1 ATAT--AATCTTAGAATGATATG
86105262 ATTTTGTAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
34 10 0.20
35 23 0.46
36 8 0.16
37 9 0.18
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (35 bp):
ATATAATCTTAGAATGATATGCAATCTTAGATACG
Found at i:86105261 original size:17 final size:19
Alignment explanation
Indices: 86105183--86105254 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
86105173 ATAATCTTCA
86105183 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86105202 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
86105219 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
86105237 ACGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86105255 AGATATGATT
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
16 1 0.02
17 15 0.31
18 14 0.29
19 19 0.39
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:86108457 original size:41 final size:41
Alignment explanation
Indices: 86108274--86108455 Score: 204
Period size: 41 Copynumber: 4.4 Consensus size: 41
86108264 CCGGGTCTTA
* * ** *
86108274 AGCCTAGCAGGCTTCGAGCCGGTGTACCATAACAGGCCTTG
1 AGCCTAGCAGGCTTCGTGCTGGTGTATTATATCAGGCCTTG
* *
86108315 AGCCTAGCAAGCTTCGTGCTGGTGTATTGTATCAGGCCTTG
1 AGCCTAGCAGGCTTCGTGCTGGTGTATTATATCAGGCCTTG
* * * * *
86108356 AGCCTAGCAGGCTTCATGCTGGTATATTGTATTAGGCCATG
1 AGCCTAGCAGGCTTCGTGCTGGTGTATTATATCAGGCCTTG
** *
86108397 AGTTTAGCAGGCTTCGTG-TCGGTGTATTATATCAGGCCTTA
1 AGCCTAGCAGGCTTCGTGCT-GGTGTATTATATCAGGCCTTG
*
86108438 AGCCTAGCAGACTTCGTG
1 AGCCTAGCAGGCTTCGTG
86108456 TCAATGTATC
Statistics
Matches: 117, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
40 1 0.01
41 116 0.99
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
AGCCTAGCAGGCTTCGTGCTGGTGTATTATATCAGGCCTTG
Found at i:86108470 original size:82 final size:82
Alignment explanation
Indices: 86108319--86108473 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 82
86108309 GCCTTGAGCC
* * * ** *
86108319 TAGCAAGCTTCGTGCTGGTGTATTGTATCAGGCCTTGAGCCTAGCAGGCTTCATGCTGGTATATT
1 TAGCAAGCTTCGTGCTGGTGTATTATATCAGGCCTTAAGCCTAGCAGACTTCATGCTAATATATC
86108384 GTATTAGGCCATGAGTT
66 GTATTAGGCCATGAGTT
* * *
86108401 TAGCAGGCTTCGTG-TCGGTGTATTATATCAGGCCTTAAGCCTAGCAGACTTCGTG-TCAATGTA
1 TAGCAAGCTTCGTGCT-GGTGTATTATATCAGGCCTTAAGCCTAGCAGACTTCATGCT-AATATA
86108464 TCGTATTAGG
64 TCGTATTAGG
86108474 TAATTTGTAC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
81 2 0.03
82 60 0.97
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.34
Consensus pattern (82 bp):
TAGCAAGCTTCGTGCTGGTGTATTATATCAGGCCTTAAGCCTAGCAGACTTCATGCTAATATATC
GTATTAGGCCATGAGTT
Found at i:86115347 original size:18 final size:18
Alignment explanation
Indices: 86115310--86115348 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
86115300 TTGGAAATCA
*
86115310 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
86115328 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
86115346 AAA
1 AAA
86115349 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:86119795 original size:36 final size:36
Alignment explanation
Indices: 86119754--86119826 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
86119744 TTGTACACAT
86119754 ATATTTTTGTACATTTGTACAATATCAATACCATAC
1 ATATTTTTGTACATTTGTACAATATCAATACCATAC
86119790 ATATTTTTGTACATTTGTACAATATCAATACCATAC
1 ATATTTTTGTACATTTGTACAATATCAATACCATAC
86119826 A
1 A
86119827 ATTGTCATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.41
Consensus pattern (36 bp):
ATATTTTTGTACATTTGTACAATATCAATACCATAC
Found at i:86120166 original size:23 final size:24
Alignment explanation
Indices: 86120140--86120198 Score: 72
Period size: 23 Copynumber: 2.5 Consensus size: 24
86120130 TTTATTTCCT
86120140 TTAATATAATATCT-TAA-TTTTAA
1 TTAATATAATAT-TATAAGTTTTAA
86120163 TTAATATAAT-TTATAATGTTTTAA
1 TTAATATAATATTATAA-GTTTTAA
86120187 TTAA-ATAATATT
1 TTAATATAATATT
86120199 TTTATAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 1 0.03
22 4 0.12
23 15 0.47
24 12 0.38
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (24 bp):
TTAATATAATATTATAAGTTTTAA
Found at i:86123135 original size:40 final size:39
Alignment explanation
Indices: 86122970--86123153 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
86122960 AAATTGAATG
* * *
86122970 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
86123010 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
86123050 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
86123090 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
86123129 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
86123154 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:86123178 original size:80 final size:81
Alignment explanation
Indices: 86123010--86123198 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
86123000 GCTGGAAATT
* * * *
86123010 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
86123075 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
86123091 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
86123154 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
86123170 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
86123199 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:86131245 original size:40 final size:39
Alignment explanation
Indices: 86131080--86131263 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
86131070 AAATTGAATG
* * *
86131080 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
86131120 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
86131160 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
86131200 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
86131239 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
86131264 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:86131288 original size:80 final size:81
Alignment explanation
Indices: 86131120--86131308 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
86131110 GCTGGAAATT
* * * *
86131120 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
86131185 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
86131201 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
86131264 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
86131280 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
86131309 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:86134301 original size:27 final size:28
Alignment explanation
Indices: 86134245--86134310 Score: 116
Period size: 27 Copynumber: 2.4 Consensus size: 28
86134235 AAACTTGTAC
86134245 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
86134273 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
86134300 AGCACTAAGTG
1 AGCACTAAGTG
86134311 GCGGACTCAC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:86142205 original size:25 final size:26
Alignment explanation
Indices: 86142153--86142216 Score: 94
Period size: 25 Copynumber: 2.4 Consensus size: 26
86142143 AAACTTGTAC
86142153 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAA--GTGCGAGTTTGATCATAT
*
86142181 AGCACTAAGTGCGAG-TTGATTATAT
1 AGCACTAAGTGCGAGTTTGATCATAT
86142206 AGCACTAAGTG
1 AGCACTAAGTG
86142217 TGCGGACTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
25 20 0.57
26 7 0.20
28 8 0.23
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGCGAGTTTGATCATAT
Found at i:86146969 original size:21 final size:20
Alignment explanation
Indices: 86146925--86146972 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
86146915 GTTTGATAAA
**
86146925 ATAAATTATTTAAAAAATTC
1 ATAAATTATTTAAAAAAAAC
*
86146945 ATAAATATATTTAAAAAAAAG
1 ATAAAT-TATTTAAAAAAAAC
86146966 ATAAATT
1 ATAAATT
86146973 TGGTTCAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (20 bp):
ATAAATTATTTAAAAAAAAC
Found at i:86147290 original size:11 final size:12
Alignment explanation
Indices: 86147225--86147287 Score: 63
Period size: 12 Copynumber: 4.8 Consensus size: 12
86147215 ACTATAAAGG
86147225 AAGAAGAAAAAAT
1 AAGAA-AAAAAAT
*
86147238 AGGAAAAAAAAT
1 AAGAAAAAAAAT
*
86147250 AAAGAAATATAAAT
1 -AAGAAA-AAAAAT
86147264 AATGTAAAAAAAAT
1 AA-G-AAAAAAAAT
86147278 AAGAAAAAAA
1 AAGAAAAAAA
86147288 TAAAATTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
12 14 0.33
13 12 0.29
14 13 0.31
15 3 0.07
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (12 bp):
AAGAAAAAAAAT
Found at i:86147717 original size:40 final size:40
Alignment explanation
Indices: 86147662--86147742 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
86147652 TTATTTAGAG
*
86147662 AAAGCTTTTCACTATACAAATAAAGATTTCAACTCAATCT
1 AAAGCTTCTCACTATACAAATAAAGATTTCAACTCAATCT
86147702 AAAGCTTCTCACTATACAAATAAAGATTTCAACTCAATCT
1 AAAGCTTCTCACTATACAAATAAAGATTTCAACTCAATCT
86147742 A
1 A
86147743 TCTTAACTCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (40 bp):
AAAGCTTCTCACTATACAAATAAAGATTTCAACTCAATCT
Found at i:86166526 original size:19 final size:19
Alignment explanation
Indices: 86166502--86166539 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
86166492 TTATTTACAT
86166502 GTGGGGGTACTG-CCATATC
1 GTGGGGGTAC-GACCATATC
86166521 GTGGGGGTACGACCATATC
1 GTGGGGGTACGACCATATC
86166540 ATGGCGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.18, C:0.21, G:0.37, T:0.24
Consensus pattern (19 bp):
GTGGGGGTACGACCATATC
Found at i:86175475 original size:26 final size:26
Alignment explanation
Indices: 86175439--86175522 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86175429 CATGAAATTC
86175439 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86175465 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86175491 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
86175517 TTATCA
1 TTATCA
86175523 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86186174 original size:19 final size:19
Alignment explanation
Indices: 86186150--86186201 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
86186140 TATTTTTGAA
86186150 TTCTTTTATTTTTCTTAT-T
1 TTCTTTTATTTTT-TTATCT
*
86186169 TTCTTTTATATTATTTATCT
1 TTCTTTTAT-TTTTTTATCT
86186189 TTC-TTTATTTTTT
1 TTCTTTTATTTTTT
86186202 CCCTATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 4 0.14
19 18 0.62
20 7 0.24
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (19 bp):
TTCTTTTATTTTTTTATCT
Found at i:86186529 original size:20 final size:21
Alignment explanation
Indices: 86186481--86186527 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
86186471 CAATTGAACC
*
86186481 AATTTTATCTATTTTTTGAAA
1 AATTTTATCAATTTTTTGAAA
86186502 AATTTTATCAATTTTTT-AAA
1 AATTTTATCAATTTTTTGAAA
86186522 TAATTT
1 -AATTT
86186528 ATTTTATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.57
Consensus pattern (21 bp):
AATTTTATCAATTTTTTGAAA
Found at i:86188720 original size:64 final size:64
Alignment explanation
Indices: 86188647--86188863 Score: 154
Period size: 64 Copynumber: 3.3 Consensus size: 64
86188637 CTAGGCCAGA
* *
86188647 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
***** * ** *
86188711 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAAAATACAAT--AA-A-CTGGGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
86188773 CTGGGCCAGA-
55 -TGGCCCATAG
* * *
86188783 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
86188847 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
86188864 TGCAACATCA
Statistics
Matches: 107, Mismatches: 30, Indels: 32
0.63 0.18 0.19
Matches are distributed among these distances:
63 9 0.08
64 31 0.29
65 5 0.05
66 1 0.01
67 13 0.12
68 4 0.04
69 13 0.12
70 1 0.01
71 5 0.05
72 16 0.15
73 9 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:86188857 original size:136 final size:136
Alignment explanation
Indices: 86188613--86188897 Score: 534
Period size: 136 Copynumber: 2.1 Consensus size: 136
86188603 TATTGGGCCT
**
86188613 AAGCCCATTCAGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
86188678 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
86188743 ATATGC
131 ATATGC
* *
86188749 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
86188814 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
86188879 ATATGC
131 ATATGC
86188885 AAGCCCATTTGGG
1 AAGCCCATTTGGG
86188898 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 145 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:86188933 original size:21 final size:21
Alignment explanation
Indices: 86188904--86188951 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
86188894 TGGGGAGACT
*
86188904 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
86188925 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
86188946 ACTCCA
1 ACTCCA
86188952 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:86189181 original size:25 final size:26
Alignment explanation
Indices: 86189153--86189208 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
86189143 CATTTAGGTC
**
86189153 AATTTAAC-CCTAGGGGTATTTCAGT
1 AATTTAACACCTAGGGGTATAACAGT
**
86189178 AATTTTGCACCTAGGGGTATAACAGT
1 AATTTAACACCTAGGGGTATAACAGT
86189204 AATTT
1 AATTT
86189209 TCCATACATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (26 bp):
AATTTAACACCTAGGGGTATAACAGT
Found at i:86189190 original size:26 final size:27
Alignment explanation
Indices: 86189161--86189236 Score: 84
Period size: 26 Copynumber: 2.8 Consensus size: 27
86189151 TCAATTTAAC
*
86189161 CCTAGGGGTATTTCAGTAATTTTGC-A
1 CCTAGGGGTATTTCAGTAATTTTCCAA
**
86189187 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATTTCAGTAATTTTCCA-A
*
86189215 CATAGGGGTATTAT-AGTAATTT
1 CCTAGGGGTATT-TCAGTAATTT
86189237 AGCTGCTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 22 0.54
28 19 0.46
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (27 bp):
CCTAGGGGTATTTCAGTAATTTTCCAA
Found at i:86189232 original size:28 final size:26
Alignment explanation
Indices: 86189163--86189236 Score: 78
Period size: 28 Copynumber: 2.8 Consensus size: 26
86189153 AATTTAACCC
* *
86189163 TAGGGGTATT-TCAGTAATTTTGCACC
1 TAGGGGTATTAT-AGTAATTTTCCACA
* *
86189189 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATTATAGTAATTTTCC--ACA
86189217 TAGGGGTATTATAGTAATTT
1 TAGGGGTATTATAGTAATTT
86189237 AGCTGCTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 19 0.49
28 20 0.51
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.38
Consensus pattern (26 bp):
TAGGGGTATTATAGTAATTTTCCACA
Found at i:86190718 original size:26 final size:26
Alignment explanation
Indices: 86190682--86190817 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
86190672 CATGAAATTC
86190682 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86190708 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86190734 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
86190760 TCATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86190786 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
86190812 TTATCA
1 TTATCA
86190818 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86193774 original size:6 final size:6
Alignment explanation
Indices: 86193763--86193796 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
86193753 ATAAGTTCAA
86193763 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
86193797 CAAAGTCCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:86193943 original size:19 final size:19
Alignment explanation
Indices: 86193919--86193997 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
86193909 AATCTTTAGG
86193919 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
86193938 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
86193957 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
86193974 GATATACAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
86193995 GAT
1 GAT
86193998 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:86193949 original size:36 final size:37
Alignment explanation
Indices: 86193909--86193986 Score: 106
Period size: 36 Copynumber: 2.2 Consensus size: 37
86193899 ATGGAAATAT
* * *
86193909 AATCTTTAGGGAT-ATGCAATCTTAGATATGATATGC
1 AATCTTTAGAGATGATACAATCTTAGATATGATATAC
*
86193945 AATC-TTAGATATGATACAATCTTAGATATGATATAC
1 AATCTTTAGAGATGATACAATCTTAGATATGATATAC
86193981 AATCTT
1 AATCTT
86193987 GAAGATATGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 6 0.17
36 29 0.81
37 1 0.03
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (37 bp):
AATCTTTAGAGATGATACAATCTTAGATATGATATAC
Found at i:86195702 original size:17 final size:18
Alignment explanation
Indices: 86195664--86195715 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
86195654 AAACTTTGAT
* *
86195664 TTTATTTCAATTTTAATCA
1 TTTATTTC-ATTTTATTTA
86195683 TTT-TTTCATTTTATTTA
1 TTTATTTCATTTTATTTA
86195700 TTTATTT-ATTTTATTT
1 TTTATTTCATTTTATTT
86195716 TCGTTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 20 0.67
18 7 0.23
19 3 0.10
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTATTTCATTTTATTTA
Found at i:86195754 original size:3 final size:3
Alignment explanation
Indices: 86195748--86195867 Score: 59
Period size: 3 Copynumber: 39.0 Consensus size: 3
86195738 TCATTCCTAA
* * * *
86195748 TAT TAT TAA TAC TAT TAT T-T CTAT TAT TAT TAT TGT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* ** * *
86195793 TAT TCT GGT TAT TAAA TAT TAT TAT T-T TAAT GTAT TGT TAT T-T CTAGT
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT -TA-T
*
86195841 TAT TAT TAT T-T CTAG TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT
86195868 ATATAATATT
Statistics
Matches: 88, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
2 5 0.06
3 73 0.83
4 8 0.09
5 2 0.02
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:86195828 original size:16 final size:17
Alignment explanation
Indices: 86195809--86195865 Score: 68
Period size: 16 Copynumber: 3.6 Consensus size: 17
86195799 GGTTATTAAA
86195809 TATTATTATTT-TAATG
1 TATTATTATTTCTAATG
* *
86195825 TATTGTTATTTCTAGT-
1 TATTATTATTTCTAATG
86195841 TATTATTATTTCT-A-G
1 TATTATTATTTCTAATG
86195856 TATTATTATT
1 TATTATTATT
86195866 ATATATAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 10 0.29
16 22 0.63
17 3 0.09
ACGTcount: A:0.26, C:0.04, G:0.07, T:0.63
Consensus pattern (17 bp):
TATTATTATTTCTAATG
Found at i:86195877 original size:18 final size:18
Alignment explanation
Indices: 86195840--86195878 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
86195830 TTATTTCTAG
* * *
86195840 TTATTATTATTTCTAGTA
1 TTATTATTATATATAATA
86195858 TTATTATTATATATAATA
1 TTATTATTATATATAATA
86195876 TTA
1 TTA
86195879 GTGTATGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (18 bp):
TTATTATTATATATAATA
Found at i:86196081 original size:15 final size:12
Alignment explanation
Indices: 86196050--86196076 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86196040 GTACATATGC
86196050 ATTTATCATTAT
1 ATTTATCATTAT
86196062 ATTTATCATTAT
1 ATTTATCATTAT
86196074 ATT
1 ATT
86196077 ATTTACTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTTATCATTAT
Found at i:86196142 original size:33 final size:33
Alignment explanation
Indices: 86196099--86196181 Score: 100
Period size: 33 Copynumber: 2.5 Consensus size: 33
86196089 TATATATATA
*
86196099 TATTAAATATTATATTTTTCATATATTATGTATT-
1 TATTATATATTATATTTTTCATATATT-T-TATTG
* *
86196133 T-TTATATATTATATTATTCGTATATTTTATTG
1 TATTATATATTATATTTTTCATATATTTTATTG
86196165 TATTATATA-TATATTTT
1 TATTATATATTATATTTT
86196182 AAATAATTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
31 4 0.09
32 9 0.21
33 29 0.67
34 1 0.02
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (33 bp):
TATTATATATTATATTTTTCATATATTTTATTG
Found at i:86196150 original size:18 final size:18
Alignment explanation
Indices: 86196111--86196144 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
86196101 TTAAATATTA
86196111 TATTTTTCATATATTATG
1 TATTTTTCATATATTATG
86196129 TATTTTT-ATATATTAT
1 TATTTTTCATATATTAT
86196145 ATTATTCGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (18 bp):
TATTTTTCATATATTATG
Found at i:86196156 original size:18 final size:17
Alignment explanation
Indices: 86196105--86196176 Score: 53
Period size: 17 Copynumber: 4.2 Consensus size: 17
86196095 TATATATTAA
*
86196105 ATATTATATTTTTC-AT
1 ATATTATATTATTCTAT
86196121 ATATTATGTATT-TT-TAT
1 ATATTA--TATTATTCTAT
86196138 ATATTATATTATTCGTAT
1 ATATTATATTATTC-TAT
* *
86196156 ATTTTAT-TGTATTATAT
1 ATATTATAT-TATTCTAT
86196173 ATAT
1 ATAT
86196177 ATTTTAAATA
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
15 4 0.09
16 8 0.17
17 17 0.37
18 17 0.37
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (17 bp):
ATATTATATTATTCTAT
Found at i:86196168 original size:26 final size:22
Alignment explanation
Indices: 86196120--86196200 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 22
86196110 ATATTTTTCA
86196120 TATATTATGTATTTTTATATAT
1 TATATTATGTATTTTTATATAT
*
86196142 TATATTATTCGTATATTTTATTGTAT
1 TATATTA-T-GTAT-TTTTA-TATAT
* *
86196168 TATA-TATATA-TTTTAAATAAT
1 TATATTATGTATTTTTATAT-AT
86196189 TATATTATGTAT
1 TATATTATGTAT
86196201 ACATTTGTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
20 1 0.02
21 11 0.23
22 12 0.26
23 3 0.06
24 5 0.11
25 7 0.15
26 8 0.17
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (22 bp):
TATATTATGTATTTTTATATAT
Found at i:86196371 original size:25 final size:25
Alignment explanation
Indices: 86196333--86196380 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
86196323 ATTATTGTTA
* *
86196333 TTAATATTAGTATATGTATATATCT
1 TTAATATTAGTATAGGTACATATCT
86196358 TTAATATATA-TATAGGTACATAT
1 TTAATAT-TAGTATAGGTACATAT
86196381 TTATGTGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (25 bp):
TTAATATTAGTATAGGTACATATCT
Found at i:86207936 original size:41 final size:41
Alignment explanation
Indices: 86207891--86207972 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 41
86207881 ATTATGCTTG
86207891 AAAAAA-GGAAATCAAGATGAAAACCCGAAAAAGGGCATCTTA
1 AAAAAACGG-AATCAAGATGAAAACCCG-AAAAGGGCATCTTA
* * *
86207933 AAAAAACGGGATCAAGGTGAAAACCCGAAAAGGGCGTCTT
1 AAAAAACGGAATCAAGATGAAAACCCGAAAAGGGCATCTT
86207973 GATTAACACA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 12 0.33
42 22 0.61
43 2 0.06
ACGTcount: A:0.49, C:0.16, G:0.23, T:0.12
Consensus pattern (41 bp):
AAAAAACGGAATCAAGATGAAAACCCGAAAAGGGCATCTTA
Found at i:86208987 original size:73 final size:72
Alignment explanation
Indices: 86208788--86209090 Score: 351
Period size: 71 Copynumber: 4.2 Consensus size: 72
86208778 TGATGTTTTT
* * * * **
86208788 ATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGGGTTGAGCCTCAAGAGACGTTGAGGT
1 ATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGT
*
86208853 ATTTTCA
66 AATTTCA
* * *
86208860 ATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGA-AAGGTGAGTTGATCCTCAGGACACACT
1 ATTTCTAT-TTTC---AAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTCAAGACACACT
86208924 GAGGTAATTTCA
61 GAGGTAATTTCA
* * **
86208936 ATTTCTATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGG
1 ATTTCTATTT-TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACACTGAGG
*
86209001 TATTTTC-
65 TAATTTCA
* * *
86209008 AGTT-TATGTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACACTGAGG
1 ATTTCTAT-TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACACTGAGG
86209072 TAATTTCA
65 TAATTTCA
*
86209080 ATTTCTGTTTT
1 ATTTCTATTTT
86209091 TCAATTTCTG
Statistics
Matches: 193, Mismatches: 28, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
71 57 0.30
72 18 0.09
73 56 0.29
74 1 0.01
75 4 0.02
76 57 0.30
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (72 bp):
ATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGT
AATTTCA
Found at i:86209094 original size:14 final size:14
Alignment explanation
Indices: 86209075--86209108 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
86209065 ACTGAGGTAA
*
86209075 TTTCAATTTCTGTT
1 TTTCAATTTCTGCT
86209089 TTTCAATTTCTGCT
1 TTTCAATTTCTGCT
86209103 TTTCAA
1 TTTCAA
86209109 AAAATCAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTGCT
Found at i:86209169 original size:88 final size:87
Alignment explanation
Indices: 86209016--86209182 Score: 235
Period size: 88 Copynumber: 1.9 Consensus size: 87
86209006 TCAGTTTATG
*
86209016 TTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGACCCTCAGGACACACTGAGGTAATTTCAA
* *
86209081 TTTCTGTTTTTCAATTTCTGCT
66 TTACTGTTTGTCAATTTCTGCT
** * * * * *
86209103 TTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGACCCTCGGGGCACGCTGAGGTATTTTCA
1 TTTC-AAAAATCAACTCATATTACGAGAAGTGAGTTGACCCTCAGGACACACTGAGGTAATTTCA
86209168 ATTACTGTTTGTCAA
65 ATTACTGTTTGTCAA
86209183 AAATCAACTC
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
87 4 0.06
88 65 0.94
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (87 bp):
TTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGACCCTCAGGACACACTGAGGTAATTTCAA
TTACTGTTTGTCAATTTCTGCT
Found at i:86209611 original size:44 final size:43
Alignment explanation
Indices: 86209562--86209664 Score: 120
Period size: 44 Copynumber: 2.3 Consensus size: 43
86209552 ATAGAAGAGC
* *
86209562 AGATTGAAGCTATAGATCT-TATCTTACTGAAGTTACA-GTGAAGT
1 AGATTGAAGCTACAGATCTATATCCT--TGAAGTTACATGTGAA-T
* *
86209606 AGATTGAAGCCACAGATCTCATATCCTTGAAGTTACATTTGAAT
1 AGATTGAAGCTACAGATCT-ATATCCTTGAAGTTACATGTGAAT
86209650 AGATTGAAGCTACAG
1 AGATTGAAGCTACAG
86209665 GGCATATGTC
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
44 42 0.82
45 4 0.08
46 5 0.10
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (43 bp):
AGATTGAAGCTACAGATCTATATCCTTGAAGTTACATGTGAAT
Found at i:86215798 original size:26 final size:26
Alignment explanation
Indices: 86215760--86215843 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86215750 CATGAAATTC
* *
86215760 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
86215786 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
86215812 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
86215838 TTATCA
1 TTATCA
86215844 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:86218113 original size:44 final size:46
Alignment explanation
Indices: 86218036--86218124 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
86218026 ATAATTGTAA
* *
86218036 ATTAAATTTTAATATTTTTAAATATATAATAATTACCGCAACTTTG
1 ATTAAATTATAATATTTTTAAATATATAATAATTACCACAACTTTG
* * *
86218082 ATTAAATTATAATTTTTTTTAA-ATAT-ATAATTATCACAACTTT
1 ATTAAATTATAATATTTTTAAATATATAATAATTACCACAACTTT
86218125 TATTTTACTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
44 15 0.39
45 4 0.11
46 19 0.50
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (46 bp):
ATTAAATTATAATATTTTTAAATATATAATAATTACCACAACTTTG
Found at i:86223043 original size:21 final size:21
Alignment explanation
Indices: 86223005--86223045 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
86222995 TAAAATAAAT
*
86223005 TATTTAAAAAATTCATAAAAA
1 TATTTAAAAAATACATAAAAA
*
86223026 TATTTAAAAAATAGATAAAA
1 TATTTAAAAAATACATAAAA
86223046 CTGGTTCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
TATTTAAAAAATACATAAAAA
Found at i:86223182 original size:42 final size:42
Alignment explanation
Indices: 86223123--86223208 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
86223113 TCTTATCTTT
86223123 AAACCAGTACCTTGATCGATTCTCGATCTAATTCTTTTGATC
1 AAACCAGTACCTTGATCGATTCTCGATCTAATTCTTTTGATC
86223165 AAACCAGTACCTTGATCGATTCTCGATCTAATTCTTTTGATC
1 AAACCAGTACCTTGATCGATTCTCGATCTAATTCTTTTGATC
86223207 AA
1 AA
86223209 TGAAATAAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (42 bp):
AAACCAGTACCTTGATCGATTCTCGATCTAATTCTTTTGATC
Found at i:86224958 original size:45 final size:45
Alignment explanation
Indices: 86224903--86224989 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
86224893 ACCATTGGGT
* *
86224903 GGTCTGAAGAAGAAGAGAAACCATTATGTCGAAGGTGGAGATACC
1 GGTCTAAAGAAGAAGAGAAACCATTACGTCGAAGGTGGAGATACC
* * *
86224948 GGTCTAAAGAAGAAGAGGAATCATTACGTTGAAGGTGGAGAT
1 GGTCTAAAGAAGAAGAGAAACCATTACGTCGAAGGTGGAGAT
86224990 GTCTGCAGCA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.38, C:0.10, G:0.32, T:0.20
Consensus pattern (45 bp):
GGTCTAAAGAAGAAGAGAAACCATTACGTCGAAGGTGGAGATACC
Found at i:86225543 original size:16 final size:16
Alignment explanation
Indices: 86225518--86225556 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
86225508 TTAAATTACT
*
86225518 TATTATAGTTCTATTC
1 TATTACAGTTCTATTC
*
86225534 TATTACAGTTTTATTC
1 TATTACAGTTCTATTC
*
86225550 CATTACA
1 TATTACA
86225557 ACTCTGTCGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.51
Consensus pattern (16 bp):
TATTACAGTTCTATTC
Found at i:86233845 original size:9 final size:9
Alignment explanation
Indices: 86233817--86233874 Score: 53
Period size: 9 Copynumber: 5.8 Consensus size: 9
86233807 GCAAAAAAGC
86233817 TCTCAAATT
1 TCTCAAATT
86233826 TCTCCCTAAATT
1 TCT--C-AAATT
*
86233838 TCTCAAATC
1 TCTCAAATT
86233847 TCTCAAATT
1 TCTCAAATT
86233856 TCTCCTTAAATT
1 TCT-C--AAATT
86233868 TCTCAAA
1 TCTCAAA
86233875 GCTCTCTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
9 21 0.51
10 2 0.05
11 2 0.05
12 16 0.39
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (9 bp):
TCTCAAATT
Found at i:86233851 original size:30 final size:30
Alignment explanation
Indices: 86233812--86233880 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
86233802 TTTTGGCAAA
86233812 AAAGCTCTCAAATTTCTCCCTAAATTTCTC
1 AAAGCTCTCAAATTTCTCCCTAAATTTCTC
* *
86233842 AAATCTCTCAAATTTCTCCTTAAATTTCTC
1 AAAGCTCTCAAATTTCTCCCTAAATTTCTC
86233872 AAAGCTCTC
1 AAAGCTCTC
86233881 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.30, C:0.29, G:0.03, T:0.38
Consensus pattern (30 bp):
AAAGCTCTCAAATTTCTCCCTAAATTTCTC
Found at i:86233880 original size:21 final size:21
Alignment explanation
Indices: 86233842--86233885 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
86233832 TAAATTTCTC
**
86233842 AAATCTCTCAAATTTCTCCTT
1 AAATCTCTCAAAGCTCTCCTT
* *
86233863 AAATTTCTCAAAGCTCTCTTT
1 AAATCTCTCAAAGCTCTCCTT
86233884 AA
1 AA
86233886 TTAATTATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.41
Consensus pattern (21 bp):
AAATCTCTCAAAGCTCTCCTT
Found at i:86235627 original size:18 final size:18
Alignment explanation
Indices: 86235604--86235647 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
86235594 ACGTCAGATG
*
86235604 TGTATCCTATCCCTTATA
1 TGTATCCTAACCCTTATA
86235622 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
*
86235640 TGTTTCCT
1 TGTATCCT
86235648 TTTCTTAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.45
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:86236093 original size:24 final size:22
Alignment explanation
Indices: 86236066--86236121 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 22
86236056 CATGTAACAA
86236066 AATAAAAGTTATTTTTA-ATATTTT
1 AATAAAA-TT-TTTTTATAT-TTTT
86236090 AATAGTAAATTTTTTTATATTTTT
1 AATA--AAATTTTTTTATATTTTT
86236114 AATAAAAT
1 AATAAAAT
86236122 AGAAGTACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
22 4 0.14
24 18 0.62
25 4 0.14
26 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
AATAAAATTTTTTTATATTTTT
Found at i:86239236 original size:26 final size:26
Alignment explanation
Indices: 86239207--86239262 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
86239197 TGATAAAAAT
86239207 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86239233 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86239259 TGAT
1 TGAT
86239263 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86240775 original size:26 final size:26
Alignment explanation
Indices: 86240723--86240775 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
86240713 TTTACAGTTT
*
86240723 TACCCCTAGGAGATAAATTATCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
86240749 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCGAAA
86240775 T
1 T
86240776 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:86250685 original size:92 final size:93
Alignment explanation
Indices: 86250565--86250739 Score: 289
Period size: 92 Copynumber: 1.9 Consensus size: 93
86250555 CTCAAAATTA
* * *
86250565 TTTTTTCAGGAACTACTGTAGAAAAAGAGCATCCACGTGGGAGC-TTTTTCATCAATTTTGCTGA
1 TTTTTTCAGGAACTACTATAGAAAAAGAGCATCCACATGGGAGCTTTTTTAATCAATTTTGCTGA
* *
86250629 CAGTGCATCTTGCTTGAAGCGTTTATTC
66 CAGTGCATCCTACTTGAAGCGTTTATTC
*
86250657 TTTTTTTAGGAACTACTATAGAAAAAGAGCATCCACATGGGAGCTTTTTTAATCAATTTTGCTGA
1 TTTTTTCAGGAACTACTATAGAAAAAGAGCATCCACATGGGAGCTTTTTTAATCAATTTTGCTGA
86250722 CAGTGCATCCTACTTGAA
66 CAGTGCATCCTACTTGAA
86250740 ACGGTTTTGA
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
92 41 0.54
93 35 0.46
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (93 bp):
TTTTTTCAGGAACTACTATAGAAAAAGAGCATCCACATGGGAGCTTTTTTAATCAATTTTGCTGA
CAGTGCATCCTACTTGAAGCGTTTATTC
Found at i:86250901 original size:126 final size:126
Alignment explanation
Indices: 86250657--86250913 Score: 340
Period size: 126 Copynumber: 2.0 Consensus size: 126
86250647 GCGTTTATTC
*
86250657 TTTTTTTAGGAACTACTATAGAAAAAGAGCATCCACATGGGAGCTTTTTTAATCAATTTTGCTGA
1 TTTTTTCAGGAACTACTATAGAAAAAGAGCATCCACATGGGAGCTTTTTTAATCAATTTTGCTGA
* *
86250722 CAGTGCATCCTACTTGAAACGGTTTTGACACTATTTGTTCAAAACCGTCTTCTCAAAATTA
66 CAGTGCATCCTACTTGAAACGGTTTTGACACTATTTGTTCAAAACCATATTCTCAAAATTA
* ** * *
86250783 TTTTTTCAGGAACTACTGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGT-AATTTTTG-T
1 TTTTTTCAGGAACTACTATAGAAAAAGAGCATCCACATGGGAGCTTTTTT-AATCAA-TTTTGCT
* * * * *
86250846 GACAGTGCATCCTGCTTGAAGCGTTTTTGACATTATCTT-TTCAGAACCATATTCTCAAAATTA
64 GACAGTGCATCCTACTTGAAACGGTTTTGACACTAT-TTGTTCAAAACCATATTCTCAAAATTA
*
86250909 ATTTT
1 TTTTT
86250914 CCTGAAACAA
Statistics
Matches: 114, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
126 105 0.92
127 9 0.08
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
TTTTTTCAGGAACTACTATAGAAAAAGAGCATCCACATGGGAGCTTTTTTAATCAATTTTGCTGA
CAGTGCATCCTACTTGAAACGGTTTTGACACTATTTGTTCAAAACCATATTCTCAAAATTA
Found at i:86251110 original size:34 final size:33
Alignment explanation
Indices: 86250994--86251119 Score: 110
Period size: 34 Copynumber: 3.8 Consensus size: 33
86250984 CAAAATATTA
*
86250994 TTTAAAAAA-ACTAAACCCTAATTTAATTAGTTT
1 TTTAAAAAACACTAAACCCTAATTTAATTA-ATT
* ** *
86251027 TTTTAAAAACTTTAAACCCTAATTTAATTTATT
1 TTTAAAAAACACTAAACCCTAATTTAATTAATT
** * * *
86251060 TATTTTAAATCCCTAAACTCTAATTTAATTAATT
1 T-TTAAAAAACACTAAACCCTAATTTAATTAATT
* *
86251094 TTTAAAAAAACACTAAATCCTGATTT
1 TTT-AAAAAACACTAAACCCTAATTT
86251120 TATTTTTTAA
Statistics
Matches: 72, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
33 13 0.18
34 59 0.82
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.43
Consensus pattern (33 bp):
TTTAAAAAACACTAAACCCTAATTTAATTAATT
Found at i:86256568 original size:30 final size:30
Alignment explanation
Indices: 86256533--86256601 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
86256523 TTTTAGCAAA
86256533 AAATCTCTCAAATTTCTCCCTAAATTTCTT
1 AAATCTCTCAAATTTCTCCCTAAATTTCTT
*
86256563 AAATCTCTCAAATTTCTCCTTAAATTTCTT
1 AAATCTCTCAAATTTCTCCCTAAATTTCTT
*
86256593 AAAGCTCTC
1 AAATCTCTC
86256602 TTTAATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.30, C:0.26, G:0.01, T:0.42
Consensus pattern (30 bp):
AAATCTCTCAAATTTCTCCCTAAATTTCTT
Found at i:86258350 original size:18 final size:18
Alignment explanation
Indices: 86258327--86258369 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
86258317 TGCCAGGTGC
* *
86258327 GTATCCTAGCCTTTATAT
1 GTATCCTAACCCTTATAT
86258345 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
86258363 GTTTCCT
1 GTATCCT
86258370 TTTCTCAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:86259736 original size:19 final size:19
Alignment explanation
Indices: 86259712--86259750 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
86259702 ATCTCATGAA
86259712 AACGGTCCTTAATGATCTC
1 AACGGTCCTTAATGATCTC
86259731 AACGGTCCTTAATGATCTC
1 AACGGTCCTTAATGATCTC
86259750 A
1 A
86259751 TACCCTACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (19 bp):
AACGGTCCTTAATGATCTC
Found at i:86263207 original size:40 final size:40
Alignment explanation
Indices: 86263027--86263189 Score: 299
Period size: 40 Copynumber: 4.1 Consensus size: 40
86263017 CGGATGTAAC
*
86263027 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
86263067 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
86263107 AACCCGCACGATTGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
86263147 AACCCGCACGAATGCCTTCAGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
86263187 AAC
1 AAC
86263190 TAGCACAATT
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 119 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:86265539 original size:126 final size:126
Alignment explanation
Indices: 86265289--86265810 Score: 615
Period size: 126 Copynumber: 4.2 Consensus size: 126
86265279 TAAGGCCAAA
* * * * * * *
86265289 CAGGAACTACTGTAAAAAAAGAGTGTCCACGTGGGAGCTTTTTTCATTAATTTTTCTAACGGCGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGC
* * *
86265354 ATCCCACTTGAAGCATTTTTGACATTATTTACTCAGAAACATCTTCTCAAAATTATTTTTT
66 ATCCTACTTGAAGCATTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTATTTTTT
* *
86265415 CAGGAACTATTGTAGAAAAAGAACGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGC
* * *
86265480 ATCCTACTTGAAGCATTTTTTACACTATTT-TTCAGAAACGTCTTCTCAAAATTCTTTTTT
66 ATCCTACTTGAAGCATTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTATTTTTT
* * * * *
86265540 TAAGAACTACTGTAGAAAAAGAGTGTCCATGTGGGAGCTTTTTTAATCAATTTTGC-GACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGC
* * * *
86265604 ATCGTACTTGAAGCGTTTTTGACACTGTTTGTTCA-AAACCATCTTCTCAAAATTATTTTTT
66 ATCCTACTTGAAGCATTTTTGACACTATTTATTCAGAAA-CATCTTCTCAAAATTATTTTTT
* * * *
86265665 CAGTAACTACTATAGAAAAAGAGCGTTCACGTGGAAGCTTTTTTCAGT-AATTTTTG-TGACAGT
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCA-TCAA-TTTTGCTGACAGT
* * * * * * * *
86265728 GCATCCTGCTTGAAGCGTTTTTGACATTATCTT-TTCAGAACCGTCTTCTTAAAATTAATTTTC
64 GCATCCTACTTGAAGCATTTTTGACACTAT-TTATTCAGAAACATCTTCTCAAAATTATTTTTT
* * *
86265791 CTGAAACAACTGTAGAAAAA
1 CAGGAACTACTGTAGAAAAA
86265811 AAATAAAATC
Statistics
Matches: 339, Mismatches: 50, Indels: 14
0.84 0.12 0.03
Matches are distributed among these distances:
124 37 0.11
125 139 0.41
126 159 0.47
127 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.37
Consensus pattern (126 bp):
CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGC
ATCCTACTTGAAGCATTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTATTTTTT
Found at i:86265734 original size:250 final size:252
Alignment explanation
Indices: 86265292--86265783 Score: 679
Period size: 250 Copynumber: 2.0 Consensus size: 252
86265282 GGCCAAACAG
* * * *
86265292 GAACTACTGTAAAAAAAGAGTGTCCACGTGGGAGCTTTTTTCATTAATTTTTCTAACGGCGCATC
1 GAACTACTGTAAAAAAAGAGTGTCCACGTGGGAGCTTTTTTAATCAATTTTGCTAACAGCGCATC
*
86265357 CCACTTGAAGCATTTTTGACATTATTTACTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAAC
66 CCACTTGAAGCATTTTTGACACTATTTACTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAAC
* * *
86265422 TATTGTAGAAAAAGAACGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTAC
131 TACTATAGAAAAAGAACGTCCACGTGGAAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTAC
*
86265487 TTGAAGCATTTTTTACACTAT-TTTTCAGAAACGTCTTCTCAAAATTCTTTTTTTAA
196 TTGAAGCATTTTTGACACTATCTTTTCAGAAACGTCTTCTCAAAATTCTTTTTTTAA
* * * *
86265543 GAACTACTGTAGAAAAAGAGTGTCCATGTGGGAGCTTTTTTAATCAATTTTGC-GACAGTGCATC
1 GAACTACTGTAAAAAAAGAGTGTCCACGTGGGAGCTTTTTTAATCAATTTTGCTAACAGCGCATC
** * * ** *
86265607 GTACTTGAAGCGTTTTTGACACTGTTTGTTCA-AAACCATCTTCTCAAAATTATTTTTTCAGTAA
66 CCACTTGAAGCATTTTTGACACTATTTACTCAGAAA-CATCTTCTCAAAATTATTTTTTCAGGAA
* *
86265671 CTACTATAGAAAAAGAGCGTTCACGTGGAAGCTTTTTTCAGT-AATTTTTG-TGACAGTGCATCC
130 CTACTATAGAAAAAGAACGTCCACGTGGAAGCTTTTTTCA-TCAA-TTTTGCTGACAGTGCATCC
* * * * *
86265734 TGCTTGAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTTAAAATT
193 TACTTGAAGCATTTTTGACACTATCTTTTCAGAAACGTCTTCTCAAAATT
86265784 AATTTTCCTG
Statistics
Matches: 210, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
249 3 0.01
250 130 0.62
251 77 0.37
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (252 bp):
GAACTACTGTAAAAAAAGAGTGTCCACGTGGGAGCTTTTTTAATCAATTTTGCTAACAGCGCATC
CCACTTGAAGCATTTTTGACACTATTTACTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAAC
TACTATAGAAAAAGAACGTCCACGTGGAAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTAC
TTGAAGCATTTTTGACACTATCTTTTCAGAAACGTCTTCTCAAAATTCTTTTTTTAA
Found at i:86265950 original size:39 final size:38
Alignment explanation
Indices: 86265890--86265976 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 38
86265880 AGCTAAACCC
* **
86265890 TAATTTAATTAGTTTTCTTAAAAGCTGTAAACCCTAATT
1 TAATTTAATTAGTTTTCTT-AAACCCCTAAACCCTAATT
* *
86265929 TAATTTATTTA-TTTATTTTAAACCCCTAAACCCTAATT
1 TAATTTAATTAGTTT-TCTTAAACCCCTAAACCCTAATT
86265967 TAA-TTAATTA
1 TAATTTAATTA
86265977 AAAAAAGCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
37 6 0.15
38 22 0.54
39 13 0.32
ACGTcount: A:0.37, C:0.14, G:0.03, T:0.46
Consensus pattern (38 bp):
TAATTTAATTAGTTTTCTTAAACCCCTAAACCCTAATT
Found at i:86269228 original size:10 final size:10
Alignment explanation
Indices: 86269202--86269247 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
86269192 AAATTTTTTG
86269202 ATTTAT-TTT
1 ATTTATCTTT
86269211 GATTTATCTTT
1 -ATTTATCTTT
86269222 ATTTATCTTT
1 ATTTATCTTT
*
86269232 AATTATCTTT
1 ATTTATCTTT
*
86269242 AATTAT
1 ATTTAT
86269248 TTATATTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
10 31 0.91
11 3 0.09
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:86270003 original size:18 final size:18
Alignment explanation
Indices: 86269968--86270001 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
86269958 TATTCCTCAT
86269968 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
86269986 TTTAATTT-TGCAATTT
1 TTTAATTTCTGCAATTT
86270002 TAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:86272940 original size:6 final size:6
Alignment explanation
Indices: 86272929--86272958 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
86272919 AGGCAACCCA
86272929 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
86272959 TCTTATCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:86272982 original size:18 final size:18
Alignment explanation
Indices: 86272929--86272982 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
86272919 AGGCAACCCA
* *
86272929 ATTTTTATTTTTATTTTT
1 ATTTTTATTTTTATTATC
*
86272947 ATTTTTATTTTTTCTTATC
1 ATTTTTA-TTTTTATTATC
86272966 A-TTTTATTATTTATTAT
1 ATTTTTATT-TTTATTAT
86272983 TTTCAAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 2 0.07
18 19 0.63
19 9 0.30
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTTTTATTTTTATTATC
Found at i:86275421 original size:18 final size:18
Alignment explanation
Indices: 86275386--86275419 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86275376 TATTCCTCAT
*
86275386 TTTAATTTCTGCAATTTA
1 TTTAATTTCTACAATTTA
86275404 TTTAATTT-TACAATTT
1 TTTAATTTCTACAATTT
86275420 TAATTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTAATTTCTACAATTTA
Found at i:86279514 original size:8 final size:8
Alignment explanation
Indices: 86279501--86279526 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
86279491 TTGAGAGGTG
86279501 AATTCATT
1 AATTCATT
86279509 AATTCATT
1 AATTCATT
86279517 AATTCATT
1 AATTCATT
86279525 AA
1 AA
86279527 ATGAATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (8 bp):
AATTCATT
Found at i:86284378 original size:2 final size:2
Alignment explanation
Indices: 86284371--86284396 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
86284361 CTAATATGAT
86284371 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
86284397 GATACGCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:86285366 original size:24 final size:24
Alignment explanation
Indices: 86285339--86285389 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
86285329 TTCGTAGTTG
*
86285339 AAATAAATTATGCTAATAAATACT
1 AAATAAATTATACTAATAAATACT
*
86285363 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
86285387 AAA
1 AAA
86285390 CCTTCTACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:86288324 original size:26 final size:26
Alignment explanation
Indices: 86288294--86288375 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
86288284 TGAAATTCCC
86288294 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86288320 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86288346 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86288372 ATCA
1 ATCA
86288376 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86295127 original size:26 final size:26
Alignment explanation
Indices: 86295097--86295149 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
86295087 TGAAATTCCC
86295097 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
86295123 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
86295149 A
1 A
86295150 CAGTCCTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:86297435 original size:26 final size:26
Alignment explanation
Indices: 86297415--86297484 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
86297405 CATTTAAGTC
*
86297415 AATTTAAC-CCTAGGGGTATTTCGAT
1 AATTTAACTCCTAGGGGTATTTAGAT
* *
86297440 AATTTATCTCCTAGGGGTATTTTGAT
1 AATTTAACTCCTAGGGGTATTTAGAT
*
86297466 AATTTATCTCCTAGGGGTA
1 AATTTAACTCCTAGGGGTA
86297485 AAACTGTAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
25 7 0.17
26 35 0.83
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (26 bp):
AATTTAACTCCTAGGGGTATTTAGAT
Found at i:86298994 original size:26 final size:26
Alignment explanation
Indices: 86298964--86299045 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
86298954 TGAAATTCCC
86298964 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86298990 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86299016 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86299042 ATCA
1 ATCA
86299046 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86301058 original size:205 final size:205
Alignment explanation
Indices: 86300706--86301450 Score: 1205
Period size: 205 Copynumber: 3.7 Consensus size: 205
86300696 AGCTGAAGTA
* *
86300706 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGT
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
** *
86300771 TTTTGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGAGAACAAA
66 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
86300836 TCGAATTTTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
86300901 ATACTGAAGC
196 ATACTGAAGC
86300911 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
* * *
86300976 TTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGAGAATAAA
66 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * *
86301041 TTGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAGATCTAACCTTTAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
*
86301106 ATATTGAAGC
196 ATACTGAAGC
*
86301116 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAACGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
* * *
86301181 TTTCACGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAAAGAACAAA
66 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
86301246 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGACACATAGCAGATCTAAGCTTCAGATG---
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
86301308 --ACTGAAGC
196 ATACTGAAGC
* * *
86301316 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAAAAAATCAAAGACATAGCTGATTTGGT
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
** * *
86301381 TTTTGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCA-CTCTGTATTATTAGAGAACAAA
66 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
86301445 TCGAAG
131 TCGAAG
86301451 AAACAGATTT
Statistics
Matches: 504, Mismatches: 36, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
199 25 0.05
200 106 0.21
205 373 0.74
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
ATACTGAAGC
Found at i:86302099 original size:14 final size:15
Alignment explanation
Indices: 86302080--86302189 Score: 87
Period size: 18 Copynumber: 6.5 Consensus size: 15
86302070 AATCTTCAAT
86302080 GATATG-CAATCTTA
1 GATATGACAATCTTA
86302094 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
86302111 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
86302129 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
86302148 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
86302165 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
86302183 GATATGA
1 GATATGA
86302190 TATGCAATCT
Statistics
Matches: 85, Mismatches: 0, Indels: 18
0.83 0.00 0.17
Matches are distributed among these distances:
14 6 0.07
15 2 0.02
17 28 0.33
18 29 0.34
19 19 0.22
20 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:86302124 original size:35 final size:36
Alignment explanation
Indices: 86302078--86302203 Score: 195
Period size: 35 Copynumber: 3.5 Consensus size: 36
86302068 ATAATCTTCA
86302078 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
86302114 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
*
86302151 ATGATA--CAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGA-TACAATCTTAGAT
86302186 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86302204 AGATATGATT
Statistics
Matches: 83, Mismatches: 1, Indels: 11
0.87 0.01 0.12
Matches are distributed among these distances:
35 36 0.43
36 20 0.24
37 27 0.33
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:86302136 original size:54 final size:54
Alignment explanation
Indices: 86302078--86302203 Score: 252
Period size: 54 Copynumber: 2.3 Consensus size: 54
86302068 ATAATCTTCA
86302078 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
86302132 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
86302186 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86302204 AGATATGATT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
Found at i:86302210 original size:17 final size:19
Alignment explanation
Indices: 86302078--86302203 Score: 210
Period size: 19 Copynumber: 6.9 Consensus size: 19
86302068 ATAATCTTCA
86302078 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86302097 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86302114 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86302132 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86302151 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86302168 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86302186 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86302204 AGATATGATT
Statistics
Matches: 101, Mismatches: 0, Indels: 12
0.89 0.00 0.11
Matches are distributed among these distances:
17 32 0.32
18 32 0.32
19 37 0.37
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:86302229 original size:22 final size:22
Alignment explanation
Indices: 86302078--86302226 Score: 103
Period size: 19 Copynumber: 7.8 Consensus size: 22
86302068 ATAATCTTCA
86302078 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86302097 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86302114 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86302132 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86302151 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86302168 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86302186 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
86302208 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
86302227 GATTTAATTT
Statistics
Matches: 118, Mismatches: 2, Indels: 16
0.87 0.01 0.12
Matches are distributed among these distances:
17 32 0.27
18 32 0.27
19 34 0.29
22 8 0.07
23 12 0.10
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:86302731 original size:17 final size:16
Alignment explanation
Indices: 86302686--86302742 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 16
86302676 CAATATATTT
86302686 TATA-TTTTTTATATAA
1 TATATTTTTTTATA-AA
*
86302702 T-TATTATTCTTATAAA
1 TATATT-TTTTTATAAA
*
86302718 TATATTTTTATTATATA
1 TATATTTTT-TTATAAA
86302735 TATATTTT
1 TATATTTT
86302743 AAATTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 2 0.06
16 7 0.21
17 25 0.74
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATTTTTTTATAAA
Found at i:86313138 original size:136 final size:136
Alignment explanation
Indices: 86312895--86313179 Score: 500
Period size: 136 Copynumber: 2.1 Consensus size: 136
86312885 TATTGGGCCT
** *
86312895 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAATTACAATAAACTGGGCCTTA
86312960 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACACGCAACATCAAT-AAC
66 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACACGCAACATCAATAAAC
86313024 ATATGC
131 ATATGC
*
86313030 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCTTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCA-ATTACAATAAACTGGGCCTT
* *
86313095 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
65 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACACGCAACATCAATAAA
86313160 CATATGC
130 CATATGC
86313167 AAGCCCATTTGGG
1 AAGCCCATTTGGG
86313180 GAGACTACTC
Statistics
Matches: 142, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
135 40 0.28
136 80 0.56
137 22 0.15
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAATTACAATAAACTGGGCCTTA
GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACACGCAACATCAATAAAC
ATATGC
Found at i:86313464 original size:25 final size:26
Alignment explanation
Indices: 86313427--86313475 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
86313417 TCAAACATGC
86313427 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
86313453 ATTTCGGT-AATTTATCTCTAGGG
1 ATTTAGGTCAATTTAACCCTAGGG
86313476 TAAAACTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:86314989 original size:26 final size:26
Alignment explanation
Indices: 86314953--86315036 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86314943 CATGAAATTC
86314953 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86314979 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86315005 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
86315031 TTATCA
1 TTATCA
86315037 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86318987 original size:136 final size:136
Alignment explanation
Indices: 86318744--86319028 Score: 509
Period size: 136 Copynumber: 2.1 Consensus size: 136
86318734 TATTGGGCCT
** *
86318744 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAATTACAATAAACTGGGCCTTA
86318809 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AAC
66 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAAC
86318873 ATATGC
131 ATATGC
*
86318879 AAGCCCATTTGGGTAACAGTGGTATTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCA-ATTACAATAAACTGGGCCTT
*
86318944 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
65 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
86319009 CATATGC
130 CATATGC
86319016 AAGCCCATTTGGG
1 AAGCCCATTTGGG
86319029 GAGACTACTC
Statistics
Matches: 143, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
135 40 0.28
136 81 0.57
137 22 0.15
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAATTACAATAAACTGGGCCTTA
GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAAC
ATATGC
Found at i:86320837 original size:26 final size:26
Alignment explanation
Indices: 86320807--86320888 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
86320797 TGAAATTCCC
86320807 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86320833 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86320859 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86320885 ATCA
1 ATCA
86320889 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86322900 original size:205 final size:205
Alignment explanation
Indices: 86322548--86323292 Score: 1223
Period size: 205 Copynumber: 3.7 Consensus size: 205
86322538 AGCTGAAGTA
* *
86322548 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGT
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
** *
86322613 TTTTGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGAGAACAAA
66 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
86322678 TCGAATTTTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
86322743 ATACTGAAGC
196 ATACTGAAGC
86322753 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
* * *
86322818 TTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGAGAATAAA
66 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * *
86322883 TTGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAGATCTAACCTTTAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
*
86322948 ATATTGAAGC
196 ATACTGAAGC
*
86322958 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAACGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
* *
86323023 TTTCACGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
66 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
86323088 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAAGCTTCAAATG---
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
86323150 --ACTGAAGC
196 ATACTGAAGC
* *
86323158 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGT
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
** * *
86323223 TTTTGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCA-CTCTGTATTATTAGAGAACAAA
66 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
86323287 TCGAAG
131 TCGAAG
86323293 AAACAGATTT
Statistics
Matches: 507, Mismatches: 33, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
199 26 0.05
200 107 0.21
205 374 0.74
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT
ATACTGAAGC
Found at i:86323475 original size:87 final size:86
Alignment explanation
Indices: 86323362--86323526 Score: 199
Period size: 87 Copynumber: 1.9 Consensus size: 86
86323352 TCATAAGTTT
* * *
86323362 ACAAGAAGCAGATTGAAGACATAGCAGATCTAACCTTCA-GATGATTTTA-CTGAAGCAGATCTA
1 ACAAGAAGCAAATCGAAGACACAGCAGATCTAACCTTCACG-TG--TTTACCTGAAGCAGATCTA
86323425 AGATGATTTGGCATCCTTGTGTTC
63 AGATGATTTGGCATCCTTGTGTTC
* * ** * *
86323449 ACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTTACGTGTTTACGCTGAAGCAGATCTAAG
1 ACAAGAAGCAAATCGAAGACACAGCAGATCTAACCTTCACGTGTTTAC-CTGAAGCAGATCTAAG
86323514 ATGATTTGGCATC
65 ATGATTTGGCATC
86323527 TCTGTATTGT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
85 4 0.06
87 61 0.92
88 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (86 bp):
ACAAGAAGCAAATCGAAGACACAGCAGATCTAACCTTCACGTGTTTACCTGAAGCAGATCTAAGA
TGATTTGGCATCCTTGTGTTC
Found at i:86323636 original size:261 final size:260
Alignment explanation
Indices: 86323150--86323638 Score: 723
Period size: 260 Copynumber: 1.9 Consensus size: 260
86323140 GCTTCAAATG
* * *
86323150 ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCT
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACACAGCA
* * *
86323215 GATTTGGTTTTTGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCACTCTGTATTATTAGA
66 GATTTGGCTTTTACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCACTCTGTATTATCAGA
* * *
86323280 GAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGGCGGAGTGCAGATCGAAGATATCAAC
131 AAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGACGGAGAGCAGATCGAAGATATCAAC
*
86323345 AGGACAGTCATAAGTTTACAAGAAGCAGATTGAAGACATAGCAGATCTAACCTTCAGATGATTTT
196 AGGACAGTCATAACTTTACAAGAAGCAGATTGAAGACATAGCAGATCTAACCTTCAGATGATTTT
* * *
86323410 ACTGAAGCAGATCTAAGATGATTTGGCATCCTTGTG-TTCACAAGGAGCAAATCGAAGACACAGC
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTT-ACAAGGAACAAATCAAAGACACAGC
* * *
86323474 AGATTTGGCTTTTACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTATTGTCA
65 AGATTTGGCTTTTACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCA-CTCTGTATTATCA
* *
86323539 GAAAACAAATCGAA-AAAGCAGATTTGGCGTCTCTGTGTTCTACGGAGAGCAGATCGAAGATATC
129 GAAAACAAATCGAAGAAA-CAGATTTGGCGTCTCTGTATTCGACGGAGAGCAGATCGAAGATATC
* * * *
86323603 AACATGACAGTCTTGACTTTGCAATG-AGCAGATTGA
193 AACAGGACAGTCATAACTTTACAA-GAAGCAGATTGA
86323639 GGACCATGAT
Statistics
Matches: 203, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
259 2 0.01
260 105 0.52
261 95 0.47
262 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (260 bp):
ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACACAGCA
GATTTGGCTTTTACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCACTCTGTATTATCAGA
AAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGACGGAGAGCAGATCGAAGATATCAAC
AGGACAGTCATAACTTTACAAGAAGCAGATTGAAGACATAGCAGATCTAACCTTCAGATGATTTT
Done.