Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 288 of 335
Found at i:86814958 original size:26 final size:26
Alignment explanation
Indices: 86814921--86815004 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86814911 TGATACAAAT
* *
86814921 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
86814947 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
86814973 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
86814999 TGATAA
1 TGATAA
86815005 GAATATCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:86817038 original size:136 final size:137
Alignment explanation
Indices: 86816793--86817078 Score: 493
Period size: 136 Copynumber: 2.1 Consensus size: 137
86816783 GAGTAGTCTC
86816793 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
86816858 TGTTATTTGAATAAGGGGCTAAGGCCCAATTTATTATAATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
86816923 ACTGTTA
131 ACTGTTA
*
86816930 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
86816994 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
86817059 ACTGTTA
131 ACTGTTA
**
86817066 CCTGAATGGGCTT
1 CCCAAATGGGCTT
86817079 AGGCCCAATA
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
136 121 0.86
137 20 0.14
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:86824170 original size:24 final size:24
Alignment explanation
Indices: 86824125--86824170 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
86824115 TGCATCTGTA
* *
86824125 TTTGTAGCTGATCTTGCATTTCTC
1 TTTGAAGCTGATCTAGCATTTCTC
* *
86824149 TTTGAAGCTGTTCTAGCCTTTC
1 TTTGAAGCTGATCTAGCATTTC
86824171 CAATCTTTGG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.13, C:0.22, G:0.17, T:0.48
Consensus pattern (24 bp):
TTTGAAGCTGATCTAGCATTTCTC
Found at i:86825626 original size:143 final size:144
Alignment explanation
Indices: 86825350--86825629 Score: 379
Period size: 143 Copynumber: 2.0 Consensus size: 144
86825340 CTTTCAAGAA
* * * *
86825350 AAAGACTACAAATTATGGTGGATCTTATCTTCCTGACGTTGCAGTGGAGTAGATTGAAGCCACCA
1 AAAGACTACAAATTATGGCGAATCTTATCTTCCTGAAGTTGCAATGGAGTAGATTGAAGCCACCA
* * * * * * *
86825415 GCCTTATCTCCCTAAATTTGCAGCAAAGTAGATTGAAGACAACGAATCTTATTTCCCTAACGTTG
66 GCCTTATCTCCCTAAAGTTGCAGCAAAGCAGACTGAAGACAACAAATCTCATCTCCCTAACGTCG
86825480 CAGTGGAACGTATT
131 CAGTGGAACGTATT
*
86825494 AAAG-CTATAAATTATGGCGAATCTTATCTTCCTGAAGTTGCAATGGAGTAGATTGAAGCCACCA
1 AAAGACTACAAATTATGGCGAATCTTATCTTCCTGAAGTTGCAATGGAGTAGATTGAAGCCACCA
* *
86825558 GCCTTATCTCCTTAAAGTTGCAATG-GAA-CAGACTGAAGACAACAAATCTCATCTCCCTGAA-G
66 GCCTTATCTCCCTAAAGTTGC-A-GCAAAGCAGACTGAAGACAACAAATCTCATCTCCCT-AACG
86825620 TCGCAGTGGA
128 TCGCAGTGGA
86825630 GCAGATTGAA
Statistics
Matches: 119, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
143 109 0.92
144 9 0.08
145 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (144 bp):
AAAGACTACAAATTATGGCGAATCTTATCTTCCTGAAGTTGCAATGGAGTAGATTGAAGCCACCA
GCCTTATCTCCCTAAAGTTGCAGCAAAGCAGACTGAAGACAACAAATCTCATCTCCCTAACGTCG
CAGTGGAACGTATT
Found at i:86825658 original size:44 final size:43
Alignment explanation
Indices: 86825518--86825680 Score: 128
Period size: 44 Copynumber: 3.7 Consensus size: 43
86825508 TGGCGAATCT
* * * * * *
86825518 TATCTTCCTGAAGTTGCAATGGAGTAGATTGAAGCCACCAGCCT
1 TATCTCCCTAAAGTTGCAATGGAGCAGATTGAAG-CAACAACCC
* * * **
86825562 TATCTCCTTAAAGTTGCAATGGAACAGACTGAAGACAACAAATC
1 TATCTCCCTAAAGTTGCAATGGAGCAGATTGAAG-CAACAACCC
* * * *
86825606 TCATCTCCCTGAAGTCGCAGTGGAGCAGATTGAAGCTACTAACCC
1 T-ATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGCAAC-AACCC
* * *
86825651 TATCTCCCTAAAGTTACAGTGGAGCGGATT
1 TATCTCCCTAAAGTTGCAATGGAGCAGATT
86825681 AAAACGACGA
Statistics
Matches: 92, Mismatches: 25, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
44 61 0.66
45 31 0.34
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (43 bp):
TATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGCAACAACCC
Found at i:86825697 original size:44 final size:44
Alignment explanation
Indices: 86825608--86825697 Score: 99
Period size: 44 Copynumber: 2.0 Consensus size: 44
86825598 AACAAATCTC
* * * * * *
86825608 ATCTCCCTGAAGTCGCAGTGGAGCAGATTGAAGCTACTAACCCT
1 ATCTCCCTAAAGTCACAGTGGAGCAGATTAAAACGACGAACCCT
* * *
86825652 ATCTCCCTAAAGTTACAGTGGAGCGGATTAAAACGACGAATCCT
1 ATCTCCCTAAAGTCACAGTGGAGCAGATTAAAACGACGAACCCT
86825696 AT
1 AT
86825698 ACCTCTGAAG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (44 bp):
ATCTCCCTAAAGTCACAGTGGAGCAGATTAAAACGACGAACCCT
Found at i:86827356 original size:3 final size:3
Alignment explanation
Indices: 86827235--86827341 Score: 178
Period size: 3 Copynumber: 35.7 Consensus size: 3
86827225 ATTAATTAAC
* *
86827235 ATT ATT ATT ATT ACT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
86827283 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
86827331 ACT ATT ATT AT
1 ATT ATT ATT AT
86827342 ATTTTCCCTT
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 96 1.00
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:86836957 original size:18 final size:18
Alignment explanation
Indices: 86836881--86836951 Score: 115
Period size: 18 Copynumber: 3.9 Consensus size: 18
86836871 ATCCCAACTA
86836881 CCGTATACGTGAATAGTG
1 CCGTATACGTGAATAGTG
* *
86836899 TCGTATATGTGAATAGTG
1 CCGTATACGTGAATAGTG
86836917 CCGTATACGTGAATAGTG
1 CCGTATACGTGAATAGTG
*
86836935 CCATATACGTGAATAGT
1 CCGTATACGTGAATAGT
86836952 ACCATAAACG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (18 bp):
CCGTATACGTGAATAGTG
Found at i:86838275 original size:16 final size:16
Alignment explanation
Indices: 86838254--86838284 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86838244 ATAAGCATTT
86838254 AAAAAAAAAGAAAAGG
1 AAAAAAAAAGAAAAGG
*
86838270 AAAAAAGAAGAAAAG
1 AAAAAAAAAGAAAAG
86838285 AAATGAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAGG
Found at i:86842890 original size:24 final size:24
Alignment explanation
Indices: 86842856--86842923 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
86842846 GTGAACCGTC
* *
86842856 ATGTGACCTGTCATTGTATTAAAT
1 ATGTGAACTGTCAATGTATTAAAT
* *
86842880 GTGTGAACTGTCAATGTATTACAT
1 ATGTGAACTGTCAATGTATTAAAT
* *
86842904 ATGTGAACTATCACTGTATT
1 ATGTGAACTGTCAATGTATT
86842924 TTTCTGCGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (24 bp):
ATGTGAACTGTCAATGTATTAAAT
Found at i:86843067 original size:17 final size:17
Alignment explanation
Indices: 86843054--86843176 Score: 115
Period size: 17 Copynumber: 7.3 Consensus size: 17
86843044 ATGTGTGAGT
86843054 TGTGTTTATATGTGAAC
1 TGTGTTTATATGTGAAC
* *
86843071 TGT-TTGTATATGCGAAA
1 TGTGTT-TATATGTGAAC
* ** *
86843088 TGAG-TTATATGCAAAG
1 TGTGTTTATATGTGAAC
*
86843104 TATGTTTATATGTGAAC
1 TGTGTTTATATGTGAAC
*
86843121 TGTGTTTATATGCGAAC
1 TGTGTTTATATGTGAAC
** *
86843138 TGTGTTTATATGCAAAT
1 TGTGTTTATATGTGAAC
*
86843155 TGTGTTTATATGTGAGC
1 TGTGTTTATATGTGAAC
86843172 TGTGT
1 TGTGT
86843177 CAATGTATGG
Statistics
Matches: 85, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
16 13 0.15
17 72 0.85
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.44
Consensus pattern (17 bp):
TGTGTTTATATGTGAAC
Found at i:86843131 original size:50 final size:52
Alignment explanation
Indices: 86843056--86843176 Score: 176
Period size: 51 Copynumber: 2.4 Consensus size: 52
86843046 GTGTGAGTTG
86843056 TGTTTATATGTGAACTGT-TTGTATATGCGAAATGAG-TTATATGCAAAGTA
1 TGTTTATATGTGAACTGTGTTGTATATGCGAAATGAGTTTATATGCAAAGTA
* * * *
86843106 TGTTTATATGTGAACTGTGTT-TATATGCGAACTGTGTTTATATGCAAATTG
1 TGTTTATATGTGAACTGTGTTGTATATGCGAAATGAGTTTATATGCAAAGTA
*
86843157 TGTTTATATGTGAGCTGTGT
1 TGTTTATATGTGAACTGTGT
86843177 CAATGTATGG
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
50 31 0.48
51 33 0.52
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (52 bp):
TGTTTATATGTGAACTGTGTTGTATATGCGAAATGAGTTTATATGCAAAGTA
Found at i:86846621 original size:15 final size:16
Alignment explanation
Indices: 86846601--86846630 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
86846591 GATTTGTATA
86846601 AACAAAA-AAAAAAAG
1 AACAAAAGAAAAAAAG
86846616 AACAAAAGAAAAAAA
1 AACAAAAGAAAAAAA
86846631 AAGGAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.87, C:0.07, G:0.07, T:0.00
Consensus pattern (16 bp):
AACAAAAGAAAAAAAG
Found at i:86846639 original size:17 final size:18
Alignment explanation
Indices: 86846606--86846642 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
86846596 GTATAAACAA
86846606 AAAAAAAAAGAACAAAAG
1 AAAAAAAAAGAACAAAAG
*
86846624 AAAAAAAAAGGA-AAAAG
1 AAAAAAAAAGAACAAAAG
86846641 AA
1 AA
86846643 TTAAACCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAGAACAAAAG
Found at i:86849670 original size:43 final size:43
Alignment explanation
Indices: 86849525--86849662 Score: 213
Period size: 43 Copynumber: 3.2 Consensus size: 43
86849515 TTTCAAAAAT
* * * *
86849525 GCCGCTAAAGACCGTGACTTTTAGCGGCGCTTTTTTTACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
* *
86849568 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
86849611 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
*
86849654 ACCGCTAAA
1 GCCGCTAAA
86849663 AATCATGAAC
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
Found at i:86852807 original size:23 final size:23
Alignment explanation
Indices: 86852780--86852825 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
86852770 TTTTTAAATG
86852780 CCACCTAATCCGATTTAACAGAT
1 CCACCTAATCCGATTTAACAGAT
86852803 CCACCTAATCCGATTTAACAGAT
1 CCACCTAATCCGATTTAACAGAT
86852826 GTTCTCCAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.26
Consensus pattern (23 bp):
CCACCTAATCCGATTTAACAGAT
Found at i:86855012 original size:8 final size:7
Alignment explanation
Indices: 86854941--86855078 Score: 55
Period size: 7 Copynumber: 19.1 Consensus size: 7
86854931 ACTAATTAAT
86854941 CTAAACC
1 CTAAACC
86854948 CTAAATCC
1 CTAAA-CC
*
86854956 CT-GACC
1 CTAAACC
* *
86854962 TCTGACCC
1 -CTAAACC
86854970 CTAAACC
1 CTAAACC
* *
86854977 TTAAATC
1 CTAAACC
* *
86854984 ATAAAAC
1 CTAAACC
*
86854991 ATAAACC
1 CTAAACC
*
86854998 CTTAACCC
1 C-TAAACC
86855006 CTAAACC
1 CTAAACC
*
86855013 TTAAACC
1 CTAAACC
* *
86855020 CCAACTCC
1 CTAA-ACC
*
86855028 TCTAAAAC
1 -CTAAACC
*
86855036 TTAAACC
1 CTAAACC
86855043 CT-AACC
1 CTAAACC
*
86855049 CTTAACC
1 CTAAACC
86855056 CATAAACC
1 C-TAAACC
* *
86855064 ATAATCC
1 CTAAACC
86855071 CTAAACC
1 CTAAACC
86855078 C
1 C
86855079 ATAATCTATA
Statistics
Matches: 95, Mismatches: 28, Indels: 16
0.68 0.20 0.12
Matches are distributed among these distances:
6 8 0.08
7 64 0.67
8 20 0.21
9 3 0.03
ACGTcount: A:0.39, C:0.38, G:0.01, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:86855038 original size:23 final size:22
Alignment explanation
Indices: 86854985--86855049 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
86854975 CCTTAAATCA
* *
86854985 TAAAACATAAACCCTTAACCCC
1 TAAAACTTAAACCCTCAACCCC
*
86855007 TAAACCTTAAACCC-CAACTCCTC
1 TAAAACTTAAACCCTCAAC-CC-C
86855030 TAAAACTTAAACCCT-AACCC
1 TAAAACTTAAACCCTCAACCC
86855050 TTAACCCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 16 0.44
23 17 0.47
ACGTcount: A:0.42, C:0.38, G:0.00, T:0.20
Consensus pattern (22 bp):
TAAAACTTAAACCCTCAACCCC
Found at i:86855089 original size:22 final size:22
Alignment explanation
Indices: 86855037--86855082 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
86855027 CTCTAAAACT
* *
86855037 TAAACCCTAA-CCCTTAACCCA
1 TAAACCATAATCCCTAAACCCA
86855058 TAAACCATAATCCCTAAACCCA
1 TAAACCATAATCCCTAAACCCA
86855080 TAA
1 TAA
86855083 TCTATAAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (22 bp):
TAAACCATAATCCCTAAACCCA
Found at i:86855570 original size:41 final size:41
Alignment explanation
Indices: 86855525--86855786 Score: 310
Period size: 41 Copynumber: 6.6 Consensus size: 41
86855515 TTAATTTTTT
*
86855525 GCGGCGTTTTCCCAAAAGCGCCGCTAAAACCTCGATCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATA
*
86855566 GCGGCGTTTTT---------CCGCTAAAACCTCGATCTATG
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATA
* *
86855598 GCGGCGTTTTTTCAAAAGCGCCACTAAAACCTCGATCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATA
* *
86855639 GCGGCGTTTTCCCAAAATCGCCGCTAAAACCTCGATCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATA
* ** * * *
86855680 GTGGCGTTTTTCCAAAAGCGCTACTAAAAACT-GAGCAATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATA
* * *
86855720 GCGGCGTTTTTCAAAAAGCGCCGCTAAAAGCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATA
*
86855761 GCGGCGTTTTTTCAAAAGCGCCGCTA
1 GCGGCGTTTTTCCAAAAGCGCCGCTA
86855787 TTGTTCAGTT
Statistics
Matches: 186, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
32 31 0.17
40 33 0.18
41 122 0.66
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (41 bp):
GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATA
Found at i:86855586 original size:32 final size:32
Alignment explanation
Indices: 86855545--86855608 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
86855535 CCCAAAAGCG
86855545 CCGCTAAAACCTCGATCTATAGCGGCGTTTTT
1 CCGCTAAAACCTCGATCTATAGCGGCGTTTTT
*
86855577 CCGCTAAAACCTCGATCTATGGCGGCGTTTTT
1 CCGCTAAAACCTCGATCTATAGCGGCGTTTTT
86855609 TCAAAAGCGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.31
Consensus pattern (32 bp):
CCGCTAAAACCTCGATCTATAGCGGCGTTTTT
Found at i:86855747 original size:81 final size:82
Alignment explanation
Indices: 86855577--86855782 Score: 297
Period size: 81 Copynumber: 2.5 Consensus size: 82
86855567 CGGCGTTTTT
* * * *
86855577 CCGCTAAAACCTCGATCTATGGCGGCGTTTTTTCAAAAGCGCCACTAAAACCTCGATCTATAGCG
1 CCGCTAAAACCTCGATCTATAGCGGCGTTTTTTCAAAAGCGCCACTAAAAACTCGAGCAATAGCG
* *
86855642 GCGTTTTCCCAAAATCG
66 GCGTTTTCCAAAAAGCG
* * *
86855659 CCGCTAAAACCTCGATCTATAGTGGCGTTTTTCCAAAAGCGCTACTAAAAACT-GAGCAATAGCG
1 CCGCTAAAACCTCGATCTATAGCGGCGTTTTTTCAAAAGCGCCACTAAAAACTCGAGCAATAGCG
*
86855723 GCGTTTTTCAAAAAGCG
66 GCGTTTTCCAAAAAGCG
* *
86855740 CCGCTAAAAGCTCGACCTATAGCGGCGTTTTTTCAAAAGCGCC
1 CCGCTAAAACCTCGATCTATAGCGGCGTTTTTTCAAAAGCGCC
86855783 GCTATTGTTC
Statistics
Matches: 109, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
81 61 0.56
82 48 0.44
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (82 bp):
CCGCTAAAACCTCGATCTATAGCGGCGTTTTTTCAAAAGCGCCACTAAAAACTCGAGCAATAGCG
GCGTTTTCCAAAAAGCG
Found at i:86855870 original size:41 final size:40
Alignment explanation
Indices: 86855759--86855894 Score: 132
Period size: 41 Copynumber: 3.4 Consensus size: 40
86855749 GCTCGACCTA
* **
86855759 TAGCGGCGTTTTTTCAAAAGCGCCGCTATTGTTCAGTTTT
1 TAGCGGCGTTTTATCAAAAGCGCCGCTATTACTCAGTTTT
* * *
86855799 TAGTGGCGTTTTTACTGAAAA-CGCCACTATTACTCTA-TTTT
1 TAGCGGCG-TTTTA-TCAAAAGCGCCGCTATTACTC-AGTTTT
* * *
86855840 TAGCGGCGTTTGGATCAAAAGCGCCGCTATTGCCCAGTTTT
1 TAGCGGCGTTT-TATCAAAAGCGCCGCTATTACTCAGTTTT
*
86855881 TTGCGGCGTTTTAT
1 TAGCGGCGTTTTAT
86855895 TGCAAACGTC
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
40 18 0.24
41 52 0.68
42 6 0.08
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (40 bp):
TAGCGGCGTTTTATCAAAAGCGCCGCTATTACTCAGTTTT
Found at i:86855955 original size:12 final size:12
Alignment explanation
Indices: 86855938--86855962 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86855928 TTTTTTCTCC
86855938 AAACGCCACTAA
1 AAACGCCACTAA
86855950 AAACGCCACTAA
1 AAACGCCACTAA
86855962 A
1 A
86855963 GCCCTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.32, G:0.08, T:0.08
Consensus pattern (12 bp):
AAACGCCACTAA
Found at i:86856405 original size:26 final size:26
Alignment explanation
Indices: 86856322--86856397 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
86856312 CATGAAATTC
86856322 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
86856348 TTATCATGAAACATTTATCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
86856374 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
86856398 TGTTATCAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86856641 original size:10 final size:10
Alignment explanation
Indices: 86856626--86856656 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
86856616 TTATGGAACA
86856626 AAAATTAACT
1 AAAATTAACT
86856636 AAAATTAACT
1 AAAATTAACT
86856646 AAAATTAACT
1 AAAATTAACT
86856656 A
1 A
86856657 GAAGGCCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAATTAACT
Found at i:86856953 original size:26 final size:26
Alignment explanation
Indices: 86856924--86857005 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
86856914 TGATACAAAT
86856924 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86856950 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86856976 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86857002 TGAT
1 TGAT
86857006 GGGAATTTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86863645 original size:131 final size:130
Alignment explanation
Indices: 86863460--86863719 Score: 344
Period size: 131 Copynumber: 2.0 Consensus size: 130
86863450 AATTTAGAGA
* * **
86863460 ACATGAGTGAAATTCTAAAGGAATATTCAATTACTTTAAACAAACAGGGGATCGCAACCCAGCAC
1 ACATGAATGAAATTCCAAAGGAATATTCAATTACTTTAAACAAACAGGAAATCGCAACCCAGCAC
* * *
86863525 GATAGGGCATGATTCCCTGAATTGTCAAACATCAAACATTACCCTCGTTTTGAAGAATTTTTAAA
66 GATAGGGCATGATTCCC-GAATTGCCAAACACCAAACATTACCCTCGTTTTAAAGAATTTTTAAA
86863590 G
130 G
** *
86863591 ACATGAATGAAATTCCAAAGGAATATTTGATTATTTTGAAA-AAAC-GAGAAATCGCAACCCAGC
1 ACATGAATGAAATTCCAAAGGAATATTCAATTACTTT-AAACAAACAG-GAAATCGCAACCCAGC
* ** * *
86863654 ACGATAGGGCATGATTCCCGAATTGCCAAACACCGAGTATTTCCTTCGTTTTAAAGAATTTTTAA
64 ACGATAGGGCATGATTCCCGAATTGCCAAACACCAAACATTACCCTCGTTTTAAAGAATTTTTAA
86863719 A
129 A
86863720 TGAATAATTA
Statistics
Matches: 112, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
130 40 0.36
131 69 0.62
132 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (130 bp):
ACATGAATGAAATTCCAAAGGAATATTCAATTACTTTAAACAAACAGGAAATCGCAACCCAGCAC
GATAGGGCATGATTCCCGAATTGCCAAACACCAAACATTACCCTCGTTTTAAAGAATTTTTAAAG
Found at i:86866405 original size:80 final size:80
Alignment explanation
Indices: 86866272--86866434 Score: 290
Period size: 80 Copynumber: 2.0 Consensus size: 80
86866262 AGCCTGTTAC
86866272 CCTACGACTTAGGGAGTTAAAGCTTGCTTCTTTGATTTGCTCCACTGCAACTTCAGGGAGACAAG
1 CCTACGACTTAGGGAGTTAAAGCTTGCTTCTTTGATTTGCTCCACTGCAACTTCAGGGAGACAAG
86866337 ATCTACAATCTTCAG
66 ATCTACAATCTTCAG
* * * *
86866352 CCTACGACTTAGTGAGTTAAGGCTTGGTTCTTTGATTTGCTCCGCTGCAACTTCAGGGAGACAAG
1 CCTACGACTTAGGGAGTTAAAGCTTGCTTCTTTGATTTGCTCCACTGCAACTTCAGGGAGACAAG
86866417 ATCTACAATCTTCAG
66 ATCTACAATCTTCAG
86866432 CCT
1 CCT
86866435 GTTATCCTGC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (80 bp):
CCTACGACTTAGGGAGTTAAAGCTTGCTTCTTTGATTTGCTCCACTGCAACTTCAGGGAGACAAG
ATCTACAATCTTCAG
Found at i:86866594 original size:88 final size:88
Alignment explanation
Indices: 86866444--86866825 Score: 647
Period size: 88 Copynumber: 4.3 Consensus size: 88
86866434 TGTTATCCTG
86866444 CAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACGACTTAGGGAGTTAAGGCTTGCTTC
1 CAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACGACTTAGGGAGTTAAGGCTTGCTTC
*
86866509 TTTGATTTGCTCCGCTGCAACTT
66 TTTGATTTGCTCCGCTACAACTT
* *
86866532 TAGGGAGACAAGATCTACAATCTTCAGCCTATTACCCTACGACTTAGGGAGTTAAGGCTTGCTTC
1 CAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACGACTTAGGGAGTTAAGGCTTGCTTC
*
86866597 TTTGATTTGCTCCACTACAACTT
66 TTTGATTTGCTCCGCTACAACTT
* * * *
86866620 CAAGGAGACAAGATCTACAATCTTTAGCCTGTTACCCTACAACTTAGGAAGTTAAGGCTTGCTTC
1 CAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACGACTTAGGGAGTTAAGGCTTGCTTC
86866685 TTTGATTTGCTCCGCTACAACTT
66 TTTGATTTGCTCCGCTACAACTT
* *
86866708 CAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCTTACGACTTAGGGAGTTAAGGCTTGCTTC
1 CAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACGACTTAGGGAGTTAAGGCTTGCTTC
**
86866773 TTTGATTTGCTCCGCTGTAACTT
66 TTTGATTTGCTCCGCTACAACTT
*
86866796 TAGGGAGACAAGATCTACAATCTTCAGCCT
1 CAGGGAGACAAGATCTACAATCTTCAGCCT
86866826 AATCCACTAC
Statistics
Matches: 273, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 273 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (88 bp):
CAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACGACTTAGGGAGTTAAGGCTTGCTTC
TTTGATTTGCTCCGCTACAACTT
Found at i:86866884 original size:176 final size:176
Alignment explanation
Indices: 86866447--86866897 Score: 530
Period size: 176 Copynumber: 2.6 Consensus size: 176
86866437 TATCCTGCAG
** * * * * * *
86866447 GGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACGACTTAGGGAGTTAAGGCTTGCTTCTTT
1 GGAGACAAGATCTACAATCTTCAGCCTAATACCCTACAACTTAGGAAGATAAGGCATGCTGCTTA
* * * *
86866512 GATTTGCTCCGCTGCAACTTTAGGGAGACAAGATCTACAATCTTCAGCCTATTACCCTACGACTT
66 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTATTACCCTACGACTT
86866577 AGGGAGTTAAGGCTTGCTTCTTTGATTTGCTCCACTACAACTTCAA
131 AGGGAGTTAAGGCTTGCTTCTTTGATTTGCTCCACTACAACTTCAA
* ** * * * *
86866623 GGAGACAAGATCTACAATCTTTAGCCTGTTACCCTACAACTTAGGAAGTTAAGGCTTGCTTCTTT
1 GGAGACAAGATCTACAATCTTCAGCCTAATACCCTACAACTTAGGAAGATAAGGCATGCTGCTTA
* * * * * * *
86866688 GATTTGCTCCGCTACAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCTTACGACTT
66 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTATTACCCTACGACTT
* ** * *
86866753 AGGGAGTTAAGGCTTGCTTCTTTGATTTGCTCCGCTGTAACTTTAG
131 AGGGAGTTAAGGCTTGCTTCTTTGATTTGCTCCACTACAACTTCAA
* *
86866799 GGAGACAAGATCTACAATCTTCAGCCTAAT-CCACTACAACTTTAGGGAGAT-AGG-ATGGTGGC
1 GGAGACAAGATCTACAATCTTCAGCCTAATACC-CTACAAC-TTAGGAAGATAAGGCATGCT-GC
** *
86866861 TTAAATCTGCTTTACTGCAACTTCAGGAAGACAAGAT
63 TTAAATCTGCTCCACTGCAACTTCAGGGAGACAAGAT
86866898 TCGCTGTCTT
Statistics
Matches: 243, Mismatches: 29, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
175 5 0.02
176 230 0.95
177 8 0.03
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (176 bp):
GGAGACAAGATCTACAATCTTCAGCCTAATACCCTACAACTTAGGAAGATAAGGCATGCTGCTTA
AATCTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTATTACCCTACGACTT
AGGGAGTTAAGGCTTGCTTCTTTGATTTGCTCCACTACAACTTCAA
Found at i:86866952 original size:133 final size:133
Alignment explanation
Indices: 86866771--86867077 Score: 456
Period size: 133 Copynumber: 2.3 Consensus size: 133
86866761 AAGGCTTGCT
* * *
86866771 TCTTTGATTTGCTCCGCTGTAACTTTAGGGAGACAAGATCTACAATCTTCAGCCTAATCCACTAC
1 TCTTCGATTTGCTCCACTGCAACTTTAGGGAGACAAGATCTACAATCTTCAGCCTAATCCACTAC
* *
86866836 AACTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTTTACTGCAACTTCAG-GAAGACAAGATTC
66 AACTTTAGGGAGATAGGATGGTGGCTTAAATCTGATTCACTGCAACTTCAGAG-AGACAAGATTC
*
86866900 G-CTG
130 GTC-A
* *
86866904 TCTTCGATTTACTCCACTGCAACTTTAGGGAGACAAGATCTACAATCTTCAGCCTATTCCACTAC
1 TCTTCGATTTGCTCCACTGCAACTTTAGGGAGACAAGATCTACAATCTTCAGCCTAATCCACTAC
* * * * *
86866969 AACTTTAGGGGGATAGGCTGGTGGCTTAAATCTGATTCACTGTAGCTTCAGAGAGGCAAGATTCG
66 AACTTTAGGGAGATAGGATGGTGGCTTAAATCTGATTCACTGCAACTTCAGAGAGACAAGATTCG
86867034 TCA
131 TCA
*
86867037 TCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGATCT
1 TCTTCGATTTGCTCCACTGCAACTTTAGGGAGACAAGATCT
86867078 GTAGAATCGA
Statistics
Matches: 157, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
133 155 0.99
134 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (133 bp):
TCTTCGATTTGCTCCACTGCAACTTTAGGGAGACAAGATCTACAATCTTCAGCCTAATCCACTAC
AACTTTAGGGAGATAGGATGGTGGCTTAAATCTGATTCACTGCAACTTCAGAGAGACAAGATTCG
TCA
Found at i:86867220 original size:64 final size:64
Alignment explanation
Indices: 86867100--86867227 Score: 177
Period size: 64 Copynumber: 2.0 Consensus size: 64
86867090 TCATAGGCCT
* * *
86867100 ATGCTTATGCCAAATAATTAGGATGCTATATTCGAAATGAATCAAATATTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGAATGCTATATTCGAAATGAATCAAATACTCCTAACTAAATGTG
* * * *
86867164 ATGCTTATGTCAAATAATTAGAATGCTATGA-TCGAAATGAATCAAGTGCTCTTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGAATGCTAT-ATTCGAAATGAATCAAATACTCCTAACTAAATGTG
86867228 TCATGAATGA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
64 55 0.98
65 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGAATGCTATATTCGAAATGAATCAAATACTCCTAACTAAATGTG
Found at i:86872849 original size:131 final size:130
Alignment explanation
Indices: 86872671--86872923 Score: 319
Period size: 131 Copynumber: 1.9 Consensus size: 130
86872661 AGAACATGAG
* * ** * *
86872671 TGAAATTCTAAAGGAATATTCGATTACTTTGAACAAACAAGGGATCGCAACCCAGCACTATAGGG
1 TGAAATTCTAAAAGAATATTCGATTACTTTGAAAAAACAAGAAATCGCAACCCAGCACGATAAGG
* *
86872736 CACGATTCCCTGAATTGCCAAACATCAAACATTACCATCGTTTTGAAGAATTTTTAAAGACACGA
66 CACGATTCCC-GAATTGCCAAACACCAAACATTACCATCGTTTTAAAGAATTTTTAAAGACACGA
86872801 A
130 A
* **
86872802 TGAAATTAC-AAAAGAATATTCGATTATTTTGAAAAAATGAGAAATCGCAACCCAGCACGATAAG
1 TGAAATT-CTAAAAGAATATTCGATTACTTTGAAAAAACAAGAAATCGCAACCCAGCACGATAAG
* * * ** * *
86872866 GCATGATTCTCGAATTGCCAAACACCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAA
65 GCACGATTCCCGAATTGCCAAACACCAAACATTACCATCGTTTTAAAGAATTTTTAAA
86872924 TGAATAATTA
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
130 40 0.39
131 62 0.60
132 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (130 bp):
TGAAATTCTAAAAGAATATTCGATTACTTTGAAAAAACAAGAAATCGCAACCCAGCACGATAAGG
CACGATTCCCGAATTGCCAAACACCAAACATTACCATCGTTTTAAAGAATTTTTAAAGACACGAA
Found at i:86875683 original size:8 final size:8
Alignment explanation
Indices: 86875670--86875697 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
86875660 AATTTCAAAA
86875670 TCATTAAT
1 TCATTAAT
86875678 TCATTAAT
1 TCATTAAT
86875686 TCATTAAT
1 TCATTAAT
86875694 TCAT
1 TCAT
86875698 ATATTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (8 bp):
TCATTAAT
Found at i:86877649 original size:2 final size:2
Alignment explanation
Indices: 86877642--86877676 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
86877632 AATGCTTATT
86877642 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86877677 CCACATACAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:86882108 original size:2 final size:2
Alignment explanation
Indices: 86882103--86882130 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
86882093 AAAAAAAGTA
86882103 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86882131 TACTTTAGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86883586 original size:10 final size:10
Alignment explanation
Indices: 86883562--86883628 Score: 55
Period size: 10 Copynumber: 6.7 Consensus size: 10
86883552 TACTGTTTTC
*
86883562 TAATTTCTAA
1 TAATTTTTAA
*
86883572 AAATTTTTAA
1 TAATTTTTAA
*
86883582 TAATTTTTTA
1 TAATTTTTAA
* *
86883592 CAATATTT-A
1 TAATTTTTAA
*
86883601 TCAATTTCTAA
1 T-AATTTTTAA
*
86883612 TAAATTTTAA
1 TAATTTTTAA
86883622 TAATTTT
1 TAATTTT
86883629 ATTATTTATT
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
9 1 0.02
10 40 0.93
11 2 0.05
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:86883587 original size:20 final size:20
Alignment explanation
Indices: 86883562--86883627 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
86883552 TACTGTTTTC
86883562 TAATTTCTAAAAATTTTTAA
1 TAATTTCTAAAAATTTTTAA
* * * *
86883582 TAATTTTTTACAATATTT-A
1 TAATTTCTAAAAATTTTTAA
86883601 TCAATTTCTAATAAA-TTTTAA
1 T-AATTTCTAA-AAATTTTTAA
86883622 TAATTT
1 TAATTT
86883628 TATTATTTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
19 2 0.06
20 29 0.83
21 4 0.11
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (20 bp):
TAATTTCTAAAAATTTTTAA
Found at i:86883737 original size:21 final size:20
Alignment explanation
Indices: 86883705--86883743 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
86883695 ATGTAGTTAT
*
86883705 TTTTTATAATTTTATTTGAA
1 TTTTTAAAATTTTATTTGAA
*
86883725 TTTTTAAAGATTTTTTTTG
1 TTTTTAAA-ATTTTATTTG
86883744 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.67
Consensus pattern (20 bp):
TTTTTAAAATTTTATTTGAA
Found at i:86884547 original size:12 final size:12
Alignment explanation
Indices: 86884532--86884556 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86884522 ATTTATTATT
86884532 TAATTTTTTTAA
1 TAATTTTTTTAA
86884544 TAATTTTTTTAA
1 TAATTTTTTTAA
86884556 T
1 T
86884557 TATACGAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TAATTTTTTTAA
Found at i:86888760 original size:21 final size:20
Alignment explanation
Indices: 86888734--86888780 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
86888724 ATAAGTAATA
*
86888734 ATAATATTAGAA-ATATGCAAT
1 ATAATATTA-AAGATATAC-AT
86888755 ATAATATTAAAGATATACAT
1 ATAATATTAAAGATATACAT
86888775 ATAATA
1 ATAATA
86888781 AAATAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (20 bp):
ATAATATTAAAGATATACAT
Found at i:86888959 original size:14 final size:14
Alignment explanation
Indices: 86888940--86888966 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86888930 AATACATATT
86888940 AAAAGAAAAAAAAG
1 AAAAGAAAAAAAAG
86888954 AAAAGAAAAAAAA
1 AAAAGAAAAAAAA
86888967 ATAATATTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAG
Found at i:86889134 original size:3 final size:3
Alignment explanation
Indices: 86889126--86889173 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
86889116 ATGTACTATG
* ** *
86889126 ATA ATA ATA ATG ATA ATA ATA ATA AGG ATA ATA ATA ATA ACA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
86889174 GAAAAATACA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:86889146 original size:15 final size:15
Alignment explanation
Indices: 86889126--86889165 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
86889116 ATGTACTATG
*
86889126 ATAATAATAATGATA
1 ATAATAATAAGGATA
86889141 ATAATAATAAGGATA
1 ATAATAATAAGGATA
86889156 ATAATAATAA
1 ATAATAATAA
86889166 CAATAATAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
ATAATAATAAGGATA
Found at i:86889171 original size:15 final size:15
Alignment explanation
Indices: 86889126--86889173 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
86889116 ATGTACTATG
*
86889126 ATAATAATAATGATA
1 ATAATAATAACGATA
*
86889141 ATAATAATAAGGATA
1 ATAATAATAACGATA
*
86889156 ATAATAATAACAATA
1 ATAATAATAACGATA
86889171 ATA
1 ATA
86889174 GAAAAATACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.29
Consensus pattern (15 bp):
ATAATAATAACGATA
Found at i:86889264 original size:36 final size:36
Alignment explanation
Indices: 86889216--86889288 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 36
86889206 AAGGTAAGGA
86889216 AAATAAAGTAGTAAATAATAAT-ATATTAAAAATAAT
1 AAATAAAGTAGTAAA-AATAATAATATTAAAAATAAT
*
86889252 AAATATAA-TAGTAAAAATAATAATGTTAAAAATAAT
1 AAATA-AAGTAGTAAAAATAATAATATTAAAAATAAT
86889288 A
1 A
86889289 CCATATGAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 6 0.18
36 26 0.76
37 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (36 bp):
AAATAAAGTAGTAAAAATAATAATATTAAAAATAAT
Found at i:86889266 original size:21 final size:18
Alignment explanation
Indices: 86889228--86889274 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 18
86889218 ATAAAGTAGT
86889228 AAATAAT-AATATATTAA
1 AAATAATAAATATATTAA
86889245 AAATAATAAATATAATAGTAA
1 AAATAATAAATAT-AT--TAA
86889266 AAATAATAA
1 AAATAATAA
86889275 TGTTAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.27
18 5 0.19
19 2 0.08
21 12 0.46
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
AAATAATAAATATATTAA
Found at i:86891219 original size:71 final size:71
Alignment explanation
Indices: 86891092--86891271 Score: 184
Period size: 71 Copynumber: 2.5 Consensus size: 71
86891082 GATCTTGAGT
* * * *
86891092 TCAACTCCTATCTCTCGCAATATGAGCTCGATTTTAGATTTA-ATAGGAATTGAAATTACCTCAG
1 TCAACT-C-ATCTCTCGCAATATGAGCT-GATTTTTGA--AACATA--AATTGAAATTACCCCAA
*
86891156 CGTGCCCCGAGGT
59 CGTGCCCCGAGGC
* * *
86891169 TCAACTCA-CTTCTTGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCCCAACGTGTC
1 TCAACTCATC-TCTCGCAATATGAGCTGATTTTTGAAACATAAATTGAAATTACCCCAACGTGCC
**
86891233 TTGAGGC
65 CCGAGGC
86891240 TCAACTCATCTCTCGCAATATGAGCTGATTTT
1 TCAACTCATCTCTCGCAATATGAGCTGATTTT
86891272 CTTGGAAAAC
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
71 52 0.59
72 2 0.02
73 3 0.03
74 9 0.10
75 15 0.17
76 1 0.01
77 6 0.07
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.33
Consensus pattern (71 bp):
TCAACTCATCTCTCGCAATATGAGCTGATTTTTGAAACATAAATTGAAATTACCCCAACGTGCCC
CGAGGC
Found at i:86891403 original size:160 final size:161
Alignment explanation
Indices: 86891139--86891432 Score: 509
Period size: 160 Copynumber: 1.8 Consensus size: 161
86891129 ATTTAATAGG
* * *
86891139 AATTGAAATTACCTCAGCGTGCCCCGAGGTTCAACTCACTTCTTGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* *
86891204 AACATAAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGCTGA-
66 AACATAAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAACTGAC
86891268 TTTTCTTGGAAAACATGAATTAAAAAGCAGA
131 TTTTCTTGGAAAACATGAATTAAAAAGCAGA
* *
86891299 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
*
86891364 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAACTGAC
66 AACATAAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAACTGAC
86891429 TTTT
131 TTTT
86891433 GAAAATAGAA
Statistics
Matches: 125, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
160 121 0.97
161 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (161 bp):
AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAACTGAC
TTTTCTTGGAAAACATGAATTAAAAAGCAGA
Found at i:86891414 original size:71 final size:70
Alignment explanation
Indices: 86891298--86891456 Score: 210
Period size: 71 Copynumber: 2.2 Consensus size: 70
86891288 TAAAAAGCAG
* * * ** *
86891298 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAACTGACTTTTG
86891363 AAACAT
66 AAA-AT
* * *
86891369 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAACTGACTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAACTGACTTTTG
86891434 AAAAT
66 AAAAT
86891439 AGAATTTGAAAATACCTC
1 A-AA-TTGAAAATACCTC
86891457 TCGCAATATG
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
70 3 0.04
71 61 0.80
72 12 0.16
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (70 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAACTGACTTTTG
AAAAT
Found at i:86891594 original size:71 final size:71
Alignment explanation
Indices: 86891452--86891763 Score: 466
Period size: 71 Copynumber: 4.4 Consensus size: 71
86891442 ATTTGAAAAT
* * * * * **
86891452 ACCTCTCGCAATATGAGTCGATTTTAGATTTA-ATAGGAATTGAAATTACCTCAGCGTGCCCCGA
1 ACCTCTCGCAATATGAGTTGATTTTTGA--AACATA--AATTGAAATTACCTCAACGTGTCTTGA
*
86891516 GGTTCAACTC
62 GGCTCAACTC
*
86891526 ACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
1 ACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
86891591 CAACTC
66 CAACTC
*
86891597 ACCTCTCGCAATATGAGTTGATTTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
1 ACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
86891662 CAACTC
66 CAACTC
86891668 ACCTCTCGCAATATGAGTTGATTTTT-AGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGC
1 ACCTCTCGCAATATGAGTTGATTTTTGA-AACATAAATTGAAATTACCTCAACGTGTCTTGAGGC
86891732 TCAACTC
65 TCAACTC
*
86891739 ACCTCTCGCAATATGAGCTGATTTT
1 ACCTCTCGCAATATGAGTTGATTTT
86891764 CTTGGAAAAC
Statistics
Matches: 223, Mismatches: 13, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
71 194 0.87
72 1 0.00
73 3 0.01
74 25 0.11
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (71 bp):
ACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
CAACTC
Found at i:86891837 original size:160 final size:158
Alignment explanation
Indices: 86891655--86891942 Score: 497
Period size: 160 Copynumber: 1.8 Consensus size: 158
86891645 CAACGTGTCT
86891655 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AGAACATAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AACATAAATTGAAATTACCTCAA
* * *
86891719 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAA
65 CGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGCTGA-TTT-TTGAAAAACAGGAATTAAA
86891784 AAGCAGAAATAGAAAATACCTCAGCATGCCC
128 AAGCAGAAATAGAAAATACCTCAGCATGCCC
*
86891815 TGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAAC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAAC
*
86891880 GTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAAAACAGGAATTAAAA
66 GTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGCTGATTTTTGAAAAACAGGAATTAAAA
86891943 GGTTCAACTC
Statistics
Matches: 122, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
158 18 0.15
159 3 0.02
160 100 0.82
161 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (158 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAAC
GTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGCTGATTTTTGAAAAACAGGAATTAAAAAG
CAGAAATAGAAAATACCTCAGCATGCCC
Found at i:86891950 original size:71 final size:70
Alignment explanation
Indices: 86891787--86891928 Score: 194
Period size: 71 Copynumber: 2.0 Consensus size: 70
86891777 AATTAAAAAG
* * * * * * *
86891787 CAGAAATAGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
1 CAGAAATTG-AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTT
86891852 TTGAAA
65 TTGAAA
*
86891858 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTT
1 CAGAAATTGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTT
86891923 TTGAAA
65 TTGAAA
86891929 AACAGGAATT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
70 3 0.05
71 59 0.95
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (70 bp):
CAGAAATTGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTT
TGAAA
Found at i:86892045 original size:127 final size:125
Alignment explanation
Indices: 86891821--86892188 Score: 576
Period size: 127 Copynumber: 2.9 Consensus size: 125
86891811 GCCCTGAGGC
* ** * *
86891821 TCAACTCACTTCTCGCAATATGAGTTGATT-TTTGAAACATAAATTGAAATTACCTCAACGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTCTTACAAACAGAAATTGAAATTACCTCAGCGTGTC
* * *
86891885 TTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
66 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAGAAATTAAAAGGT
86891946 TCAACTCACCTCTCGCAATATGAGTTGATTCTTAACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTCTT-ACAAACAGAAATTGAAATTACCTCAGCGTGT
**
86892011 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGATAAAGTAGAAATTAAAAGGT
65 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA-AAAACAGAAATTAAAAGGT
* *
86892073 TCAACCCACCTCTCGCAATATGAGTCGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTCTT-ACAAACAGAAATTGAAATTACCTCAGCGTGT
*
86892138 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAA
65 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAA
86892189 GTTGAAATTA
Statistics
Matches: 224, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
125 29 0.13
126 14 0.06
127 181 0.81
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (125 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTCTTACAAACAGAAATTGAAATTACCTCAGCGTGTC
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTAAAAGGT
Found at i:86892200 original size:72 final size:72
Alignment explanation
Indices: 86892073--86892249 Score: 300
Period size: 72 Copynumber: 2.4 Consensus size: 72
86892063 ATTAAAAGGT
* *
86892073 TCAACCCACCTCTCGCAATATGAGTCGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGACAAACAGAAATTGAAATTACCTCAGCGTGT
86892138 CCTGAGGC
65 CCTGAGGC
*
86892146 TCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAGTTGAAATTACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTC
86892211 CTGAGGC
66 CTGAGGC
* *
86892218 TCAACTCACTTCTCGCGATATGAGTTGATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
86892250 CTTGGAAACA
Statistics
Matches: 99, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
72 71 0.72
73 28 0.28
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTC
CTGAGGC
Found at i:86912815 original size:119 final size:119
Alignment explanation
Indices: 86912476--86912821 Score: 566
Period size: 119 Copynumber: 2.9 Consensus size: 119
86912466 CAAATTGAAA
** *
86912476 ATAGCAGATCTAACCTTCAGACATTTATACTGGAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* * *
86912541 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAAAGCTCTCAAAT
*
86912595 ATAGCAGATCTAACCTTCAGATGTTTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* *
86912660 TTACAAGAAACAAATCGAGGACATAACAGATTTGACTCTCAAAAGCTCTCAGAT
66 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAAAGCTCTCAAAT
86912714 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* * * * *
86912779 TTACAAGGAACAAATCGAGGACATTGTAGATATGACTTTCAAA
66 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAA
86912822 TGTTCTAAAA
Statistics
Matches: 211, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 211 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAAAGCTCTCAAAT
Found at i:86912910 original size:83 final size:83
Alignment explanation
Indices: 86912755--86912910 Score: 204
Period size: 83 Copynumber: 1.9 Consensus size: 83
86912745 GAAGCAGATC
* * * * * *
86912755 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGTAGATATGACTTTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
*
86912820 AATGTTCTAAAACAAGCT
66 AACGTTCTAAAACAAGCT
* * * *
86912838 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCGGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
*
86912903 GACGTTCT
66 AACGTTCT
86912911 CAATATAGCA
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
83 61 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
AACGTTCTAAAACAAGCT
Found at i:86912982 original size:201 final size:202
Alignment explanation
Indices: 86912636--86913003 Score: 603
Period size: 201 Copynumber: 1.8 Consensus size: 202
86912626 GAAGCAGATC
* * *
86912636 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAACAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAACAGATTTGACTCTCA
* *
86912701 AAAGCTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
66 AAAGCTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAGACTAAAGCAGATCCAAGATGATTT
*
86912766 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGTAGATATGACTTTCAAATGTTCTAAA
131 GGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATTGTAGATATGACTTTCAAATGTTCTAAA
86912831 ACAAGCT
196 ACAAGCT
* ** * *
86912838 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCGGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAACAGATTTGACTCTCA
* * *
86912903 GACGTTCTCA-ATATAGCAGATCTAACCTTCAGATGTTTAGACTAAAGCAGATCCAAGATGATTT
66 AAAGCTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAGACTAAAGCAGATCCAAGATGATTT
86912967 GGTATTCTTGTGTTTACAAGAAACAAATCGAGGACAT
131 GGTATTCTTGTGTTTACAAGAAACAAATCGAGGACAT
86913004 AGCAGATTTG
Statistics
Matches: 152, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
201 88 0.58
202 64 0.42
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (202 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAACAGATTTGACTCTCA
AAAGCTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAGACTAAAGCAGATCCAAGATGATTT
GGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATTGTAGATATGACTTTCAAATGTTCTAAA
ACAAGCT
Found at i:86913089 original size:119 final size:119
Alignment explanation
Indices: 86912838--86913258 Score: 648
Period size: 119 Copynumber: 3.5 Consensus size: 119
86912828 AAAACAAGCT
* * * ** *
86912838 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCGGATTTGACTCTCA
1 CAAGATGATTTGGTATCCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
86912903 GACGTTCTC-AATATAGCAGATCTAACCTTCAGATGTTTAGACTAAAGCAGATC
66 GACATTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATC
* *
86912956 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCCCA
1 CAAGATGATTTGGTATCCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
86913021 GACATTCTCAAATATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
66 GACATTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATC
* *
86913075 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCA
1 CAAGATGATTTGGTATCCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
86913140 -AAAGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATC
66 GACA-TTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATC
* * *
86913194 CAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGATTTGGTATCCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
86913259 AATGTTCTAA
Statistics
Matches: 278, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
118 67 0.24
119 211 0.76
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (119 bp):
CAAGATGATTTGGTATCCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
GACATTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATC
Found at i:86913294 original size:439 final size:440
Alignment explanation
Indices: 86912476--86913457 Score: 1714
Period size: 439 Copynumber: 2.2 Consensus size: 440
86912466 CAAATTGAAA
** * *
86912476 ATAGCAGATCTAACCTTCAGACATTTATACTGGAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTAAACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* *
86912541 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCT
66 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCCCAGACATTCTCAAATATAGCAGATCT
86912606 AACCTTCAGATGTTTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAAC
131 AACCTTCAGATGTTTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAAC
*
86912671 AAATCGAGGACATAACAGATTTGACTCTCAAAAGCTCTCAGATATAGCAGATCTAACCTTCAGAT
196 AAATCAAGGACATAACAGATTTGACTCTCAAAAGCTCTCAGATATAGCAGATCTAACCTTCAGAT
* *
86912736 GTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGAC
261 GTTTATACTAAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAGGAC
* *
86912801 ATTGTAGATATGACTTTCAAATGTTCTAAAACAAGCTCAAGATGGTTTGGCATCCTTGTGCTTAC
326 ATTGCAGATATGACTCTCAAATGTTCTAAAACAAGCTCAAGATGGTTTGGCATCCTTGTGCTTAC
*
86912866 AAGGGACAAATCGAGGACATAGCGGATTTGACTCTCAGACGTTCTCA-AT
391 AAGGGACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAGAT
* *
86912915 ATAGCAGATCTAACCTTCAGATGTTTAGACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTAAACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
*
86912980 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCCCAGACATTCTCAAATATGGCAGATCT
66 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCCCAGACATTCTCAAATATAGCAGATCT
*
86913045 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAAC
131 AACCTTCAGATGTTTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAAC
* *
86913110 AAATCAAGGACATAGCAGATTTGACTCTCAAAAGTTCTCAGATATAGCAGATCTAACCTTCAGAT
196 AAATCAAGGACATAACAGATTTGACTCTCAAAAGCTCTCAGATATAGCAGATCTAACCTTCAGAT
86913175 GTTTATACTAAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAGGAC
261 GTTTATACTAAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAGGAC
*
86913240 ATTGCAGATATGACTCTCAAATGTTCTAAAATAAGCTCAAGATGGTTTGGCATCCTTGTGCTTAC
326 ATTGCAGATATGACTCTCAAATGTTCTAAAACAAGCTCAAGATGGTTTGGCATCCTTGTGCTTAC
*
86913305 AAGGGACAAATCGAGGACATAGCAGATTTGATTCTCAGACGTTCTCAGAT
391 AAGGGACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAGAT
* * * *
86913355 ATGGCAGATTTAACCTTCAGGTGTTTAAACTGAAGCAGATCCAAGATGATTTGTTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTAAACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* * *
86913420 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTC
66 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTC
86913458 TCAAATGTTC
Statistics
Matches: 514, Mismatches: 28, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
439 418 0.81
440 96 0.19
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (440 bp):
ATAGCAGATCTAACCTTCAGATGTTTAAACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCCCAGACATTCTCAAATATAGCAGATCT
AACCTTCAGATGTTTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAAC
AAATCAAGGACATAACAGATTTGACTCTCAAAAGCTCTCAGATATAGCAGATCTAACCTTCAGAT
GTTTATACTAAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAGGAC
ATTGCAGATATGACTCTCAAATGTTCTAAAACAAGCTCAAGATGGTTTGGCATCCTTGTGCTTAC
AAGGGACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAGAT
Found at i:86913349 original size:83 final size:83
Alignment explanation
Indices: 86913194--86913349 Score: 231
Period size: 83 Copynumber: 1.9 Consensus size: 83
86913184 AAAGCAGATC
* * *
86913194 CAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
*
86913259 AATGTTCTAAAATAAGCT
66 AACGTTCTAAAATAAGCT
* * * *
86913277 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGATTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
*
86913342 GACGTTCT
66 AACGTTCT
86913350 CAGATATGGC
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
83 64 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
AACGTTCTAAAATAAGCT
Found at i:86913421 original size:202 final size:202
Alignment explanation
Indices: 86913075--86913761 Score: 1052
Period size: 202 Copynumber: 3.4 Consensus size: 202
86913065 GAAGCAGATC
* * * * * *
86913075 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
86913140 AAAGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTT
66 AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
*
86913205 GGTATCCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTAAA
131 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTAAA
* *
86913270 ATAAGCT
196 ACAAACT
* *
86913277 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGATTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* * * * * * *
86913342 GACGTTCTCAGATATGGCAGATTTAACCTTCAGGTGTTTAAACTGAAGCAGATCCAAGATGATTT
66 AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
*
86913407 GTTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTAAA
131 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTAAA
*
86913472 GCAAACT
196 ACAAACT
* * *
86913479 TAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATTGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
*
86913544 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
66 AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
* *
86913609 GGTATTCTTGTGTTTACAATGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTTAA
131 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTAAA
86913674 ACAAACT
196 ACAAACT
* * * * * *
86913681 CAAAAGGGTTCGGCATCCTTGTGCTTACAAAGGAAAAAAT-GAGGACATAGCAGATATGATTCTC
1 CAAGATGGTTTGGCATCCTTGTGCTTAC-AAGGAACAAATCGAGGACATAGCAGATTTGACTCTC
86913745 AAAAGTTCTCAAATATA
65 AAAAGTTCTCAAATATA
86913762 TTAAGATGAT
Statistics
Matches: 439, Mismatches: 45, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
202 430 0.98
203 9 0.02
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (202 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTAAA
ACAAACT
Found at i:86915326 original size:17 final size:17
Alignment explanation
Indices: 86915304--86915381 Score: 65
Period size: 16 Copynumber: 4.5 Consensus size: 17
86915294 ATATTACAAA
86915304 ATTATTTTATTATAAGT
1 ATTATTTTATTATAAGT
86915321 ATTATTTTAATTAT-A-T
1 ATTATTTT-ATTATAAGT
*
86915337 ATTATTATTACTTATTACGT
1 ATTATT-TTA-TTA-TAAGT
*
86915357 ATTATTTT-TCT-TAAAT
1 ATTATTTTAT-TATAAGT
86915373 ATTATTTTA
1 ATTATTTTA
86915382 CATCTCTTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 16
0.72 0.04 0.23
Matches are distributed among these distances:
16 19 0.38
17 15 0.30
18 7 0.14
19 2 0.04
20 7 0.14
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (17 bp):
ATTATTTTATTATAAGT
Found at i:86915346 original size:54 final size:54
Alignment explanation
Indices: 86915247--86915442 Score: 152
Period size: 54 Copynumber: 3.5 Consensus size: 54
86915237 TTATTATTCT
** * *
86915247 ATATATATTTTATTATTTGTTTTATTTTAATTTTACTTTTA-TATTATATATTACA
1 ATAT-TATTTTATTATAAGTATTATTTTAATTTTA-TATTATTATTATATATTACA
* *
86915302 AAATTATTTTATTATAAGTATTATTTTAATTATATATTATTATTACT-TATTAC-
1 ATATTATTTTATTATAAGTATTATTTTAATTTTATATTATTATTA-TATATTACA
* * * *
86915355 GTATTATTTT-TCT-TAAATATTATTTTACATCTCTTTTATATATTATTATATTTTCACA
1 ATATTATTTTAT-TATAAGTATTATTTTA-AT-T-TTATAT-TATTATTATATATT-ACA
86915413 TATATTATATTTATTATATA-TATTATTTTA
1 -ATATTAT-TTTATTATA-AGTATTATTTTA
86915443 TATGTTATTT
Statistics
Matches: 113, Mismatches: 13, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
52 14 0.12
53 15 0.13
54 38 0.34
55 9 0.08
56 11 0.10
57 2 0.02
59 6 0.05
60 4 0.04
61 13 0.12
62 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (54 bp):
ATATTATTTTATTATAAGTATTATTTTAATTTTATATTATTATTATATATTACA
Found at i:86915359 original size:36 final size:34
Alignment explanation
Indices: 86915304--86915382 Score: 97
Period size: 36 Copynumber: 2.3 Consensus size: 34
86915294 ATATTACAAA
*
86915304 ATTATTTTA-TTATAAGTATTATTTTAATTATAT
1 ATTATTTTACTTATAAGTATTATTTTAATTAAAT
* **
86915337 ATTATTATTACTTATTACGTATTATTTTTCTTAAAT
1 ATTATT-TTACTTA-TAAGTATTATTTTAATTAAAT
86915373 ATTATTTTAC
1 ATTATTTTAC
86915383 ATCTCTTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
33 6 0.15
34 3 0.08
35 7 0.18
36 23 0.59
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (34 bp):
ATTATTTTACTTATAAGTATTATTTTAATTAAAT
Found at i:86915442 original size:17 final size:17
Alignment explanation
Indices: 86915390--86915472 Score: 57
Period size: 17 Copynumber: 4.9 Consensus size: 17
86915380 TACATCTCTT
86915390 TTATATATTATTATATTT-
1 TTATATA-TATTAT-TTTA
* *
86915408 TCACATATATTATATTTA
1 TTATATATATTAT-TTTA
86915426 TTATATATATTATTTTA
1 TTATATATATTATTTTA
* * *
86915443 -TATGT-TATT-TTATG
1 TTATATATATTATTTTA
*
86915457 TTATATCTATTATTTT
1 TTATATATATTATTTT
86915473 TCTTATATGT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
14 3 0.06
15 8 0.15
16 8 0.15
17 17 0.33
18 16 0.31
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (17 bp):
TTATATATATTATTTTA
Found at i:86915444 original size:12 final size:11
Alignment explanation
Indices: 86915417--86915455 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
86915407 TTCACATATA
86915417 TTATATTTATT
1 TTATATTTATT
*
86915428 ATATATATTATT
1 TTATAT-TTATT
86915440 TTATATGTTATT
1 TTATAT-TTATT
86915452 TTAT
1 TTAT
86915456 GTTATATCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 5 0.21
12 19 0.79
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (11 bp):
TTATATTTATT
Found at i:86915533 original size:18 final size:19
Alignment explanation
Indices: 86915510--86915555 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
86915500 ATATAGTCTT
86915510 TATTATGTT-TTATTTTTA
1 TATTATGTTCTTATTTTTA
* *
86915528 TATTAT-TTCTTGTTTTTT
1 TATTATGTTCTTATTTTTA
86915546 TATATATGTT
1 TAT-TATGTT
86915556 ATGTATATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.09
18 16 0.70
19 3 0.13
20 2 0.09
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.72
Consensus pattern (19 bp):
TATTATGTTCTTATTTTTA
Found at i:86915605 original size:2 final size:2
Alignment explanation
Indices: 86915593--86915634 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
86915583 TATTTATGTT
86915593 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86915634 T
1 T
86915635 TATTTTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86925607 original size:25 final size:27
Alignment explanation
Indices: 86925570--86925622 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
86925560 TCAAACATGC
86925570 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
86925596 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
86925622 A
1 A
86925623 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:86927146 original size:32 final size:32
Alignment explanation
Indices: 86927109--86927265 Score: 260
Period size: 32 Copynumber: 4.9 Consensus size: 32
86927099 GCTTATCATG
86927109 CCATCATCCATTAACTATTAAAATGTTAATGC
1 CCATCATCCATTAACTATTAAAATGTTAATGC
* *
86927141 CCATCATTCATTAACTATTAAAATGCTAATGC
1 CCATCATCCATTAACTATTAAAATGTTAATGC
* *
86927173 CCATCATCCATTAATTATTAAAATGTTAGTGC
1 CCATCATCCATTAACTATTAAAATGTTAATGC
* *
86927205 CCATCATTCATTAACTATTAAAATGCTAATGC
1 CCATCATCCATTAACTATTAAAATGTTAATGC
86927237 CCATCATCCATTAACTATTAAAATGTTAA
1 CCATCATCCATTAACTATTAAAATGTTAA
86927266 AATGCATACA
Statistics
Matches: 113, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 113 1.00
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (32 bp):
CCATCATCCATTAACTATTAAAATGTTAATGC
Found at i:86927210 original size:64 final size:64
Alignment explanation
Indices: 86927109--86927265 Score: 296
Period size: 64 Copynumber: 2.5 Consensus size: 64
86927099 GCTTATCATG
86927109 CCATCATCCATTAACTATTAAAATGTTAATGCCCATCATTCATTAACTATTAAAATGCTAATGC
1 CCATCATCCATTAACTATTAAAATGTTAATGCCCATCATTCATTAACTATTAAAATGCTAATGC
* *
86927173 CCATCATCCATTAATTATTAAAATGTTAGTGCCCATCATTCATTAACTATTAAAATGCTAATGC
1 CCATCATCCATTAACTATTAAAATGTTAATGCCCATCATTCATTAACTATTAAAATGCTAATGC
86927237 CCATCATCCATTAACTATTAAAATGTTAA
1 CCATCATCCATTAACTATTAAAATGTTAA
86927266 AATGCATACA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 89 1.00
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (64 bp):
CCATCATCCATTAACTATTAAAATGTTAATGCCCATCATTCATTAACTATTAAAATGCTAATGC
Found at i:86932120 original size:12 final size:12
Alignment explanation
Indices: 86932103--86932131 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
86932093 AGTACTACCT
86932103 CGGCCTCGACCA
1 CGGCCTCGACCA
86932115 CGGCCTCGACCA
1 CGGCCTCGACCA
86932127 CGGCC
1 CGGCC
86932132 CTCTTCCCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.52, G:0.28, T:0.07
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:86933752 original size:25 final size:27
Alignment explanation
Indices: 86933715--86933767 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
86933705 TCAAACATGC
86933715 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
86933741 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
86933767 A
1 A
86933768 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:86935286 original size:32 final size:32
Alignment explanation
Indices: 86935245--86935401 Score: 280
Period size: 32 Copynumber: 4.9 Consensus size: 32
86935235 AATGCTTATC
*
86935245 ATGCCCATCATCCATTAACTATTAAAATGTTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
86935277 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
86935309 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
86935341 ATGCCCATCAGT-CATTAACTATTAAAATGCTA
1 ATGCCCATCA-TCCATTAACTATTAAAATGCTA
86935373 ATGCCCATCATCCATTAACTATTAAAATG
1 ATGCCCATCATCCATTAACTATTAAAATG
86935402 TTAAAATGCA
Statistics
Matches: 120, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
31 1 0.01
32 118 0.98
33 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:86937813 original size:44 final size:45
Alignment explanation
Indices: 86937758--86937865 Score: 112
Period size: 44 Copynumber: 2.4 Consensus size: 45
86937748 AGTAAACCTT
* * **
86937758 ATCTCTCTGAAGTTGCAGTCAAGCAGGTTGAAG-TAACA-AGTCGC
1 ATCTCCCTGAAGTTGCAGTCAAACAGACTGAAGTTAACAGA-TCGC
* * * **
86937802 ATCTCCTTGAAGTTACAGTGAAACAGACTGAAGTTAACAGATCTT
1 ATCTCCCTGAAGTTGCAGTCAAACAGACTGAAGTTAACAGATCGC
86937847 ATCTCCCTGAAGTTGCAGT
1 ATCTCCCTGAAGTTGCAGT
86937866 AGAGCAGATC
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
44 26 0.51
45 24 0.47
46 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTCAAACAGACTGAAGTTAACAGATCGC
Found at i:86937901 original size:44 final size:43
Alignment explanation
Indices: 86937844--86938261 Score: 156
Period size: 44 Copynumber: 9.4 Consensus size: 43
86937834 GTTAACAGAT
* * *
86937844 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGCCGTAGAC
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAAGTCGCA-AC
* ** * * * * *
86937888 CTTATCTCTCTGAAGTTACAGTAGAGTGGGTTGAAATAGCAAGT
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAAGTCGCAA-C
* * *
86937932 CTCATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAAC
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAAGTCGC-AAC
* * ** * * * * *
86937976 CCTATCTCTCTGAAGTTACAGTAGAGTGGGTTGAAATAGCAAGT
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAAGTCGCAA-C
* * ** * * *
86938020 CTCATCTCTCTGAAGTTGTAGTGGAGCAGA-CTGAAGATTGCAGAT
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGATC-GAAG-TCGCA-AC
* * * * * * *
86938065 CTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCACAATC
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAAGTCGCAA-C
* * * ** * * *
86938109 CTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGT
1 CTTATCTCCCTGAAGTTACAGTAGAGCA-GATCGAAGT-CGCAA-C
* * * * * ** *
86938155 CTCATCTCCCTGAAGTTGCAGTGGAGTAG-CCTGAAGTTAACAAAT
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGATC-GAAG-TCGC-AAC
* * * * *
86938200 TTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATC
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAAGTCGCAA-C
*
86938244 CTTATCTCTCTGAAGTTA
1 CTTATCTCCCTGAAGTTA
86938262 TGGTAGAGAA
Statistics
Matches: 268, Mismatches: 91, Indels: 30
0.69 0.23 0.08
Matches are distributed among these distances:
43 6 0.02
44 155 0.58
45 76 0.28
46 31 0.12
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAAGTCGCAAC
Found at i:86937959 original size:88 final size:88
Alignment explanation
Indices: 86937847--86938049 Score: 343
Period size: 88 Copynumber: 2.3 Consensus size: 88
86937837 AACAGATCTT
* * * *
86937847 ATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGCCGTAGACCTTATCTCTCTGAAGTTACAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCGCAAACCCTATCTCTCTGAAGTTACAGTAG
86937912 AGTGGGTTGAAATAGCAAGTCTC
66 AGTGGGTTGAAATAGCAAGTCTC
*
86937935 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAACCCTATCTCTCTGAAGTTACAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCGCAAACCCTATCTCTCTGAAGTTACAGTAG
86938000 AGTGGGTTGAAATAGCAAGTCTC
66 AGTGGGTTGAAATAGCAAGTCTC
* *
86938023 ATCTCTCTGAAGTTGTAGTGGAGCAGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGA
86938050 CTGAAGATTG
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 108 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (88 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCGCAAACCCTATCTCTCTGAAGTTACAGTAG
AGTGGGTTGAAATAGCAAGTCTC
Found at i:86938115 original size:133 final size:135
Alignment explanation
Indices: 86937935--86938279 Score: 435
Period size: 135 Copynumber: 2.6 Consensus size: 135
86937925 AGCAAGTCTC
* * * *
86937935 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAACCCTATCTCTCTGAAGTTACAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
** * * * * * *
86938000 AGTGGGTTGAAA-TA-GCAAGTCTCATCTCTCTGAAGTTGTAGTGGAGCAGACTGAAGATT-GCA
66 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TTAACA
*
86938062 GATCTT
130 AATCTT
* * * * *
86938068 GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCACAATCCTTATCTCTCTAAAATTACAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
* *
86938133 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGTAGCCTGAAGTTAACAA
66 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAACAA
*
86938198 ATTTT
131 ATCTT
**
86938203 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTATGGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
* *
86938268 AGAAAGATAAAA
66 AGCAGGATAAAA
86938280 ATACACGAAC
Statistics
Matches: 179, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
133 64 0.36
134 4 0.02
135 111 0.62
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (135 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAACAA
ATCTT
Found at i:86938297 original size:135 final size:133
Alignment explanation
Indices: 86937935--86938318 Score: 414
Period size: 135 Copynumber: 2.9 Consensus size: 133
86937925 AGCAAGTCTC
* * * *
86937935 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAACCCTATCTCTCTGAAGTTACAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
* * ** * * * * *
86938000 AGTGGGTTGAAATAGCA-AGTCTCATCTCTCTGAAGTTGTAGTGGAGCAGACTGAAGATTGCAGA
66 AGAGGATAAAAATA-CACAATCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTACAAA
86938064 TCTT
130 TCTT
* * * * *
86938068 GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCACAATCCTTATCTCTCTAAAATTACAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
* * * *
86938133 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGTAGCCTGAAG-TTAACA
66 AG-AGGATAAAAATACACAA-TCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATT-ACA
*
86938197 AATTTT
128 AATCTT
**
86938203 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTATGGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
* * * * *
86938268 AGAAAGATAAAAATACACGAACCGT-ATCTCCCTAAAGTTTCGGTGGAGCAG
66 AG-AGGATAAAAATACAC-AATC-TCATCTCCCTGAAGTTGCAGTGGAGCAG
86938319 TTGCAGTAGA
Statistics
Matches: 206, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
133 59 0.29
134 10 0.05
135 134 0.65
136 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (133 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
AGAGGATAAAAATACACAATCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTACAAAT
CTT
Found at i:86940274 original size:2 final size:2
Alignment explanation
Indices: 86940269--86940301 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
86940259 TTAGCTTTTG
86940269 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86940302 TAATCTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86940854 original size:126 final size:126
Alignment explanation
Indices: 86940644--86940942 Score: 433
Period size: 126 Copynumber: 2.4 Consensus size: 126
86940634 ATGTTTGATG
* *
86940644 TTTGGAAATTCGGGAAATCGTGCCCTATCGTGTTGGGTTTCGATTTCCCGTTTGTCCAAAATAAT
1 TTTGGAAATTCGGG-AATCGTGCCCTATCGTGCTGGGTTTCGATTTCCAGTTTGTCCAAAATAAT
86940709 CGAATATTCCTTTAGAATTTCACTCGTGTTTT-TCAAATTCTGAAA-CAAGGCAG-TGTTCAATA
65 CGAATATTCCTTTAGAATTTCACTCGTGTTTTAT-AAATTCT-AAAGCAAGG-AGATGTTCAATA
* * *
86940771 TTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCCAGTTTGTTCAGAATAATT
1 TTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCCAGTTTGTCCAAAATAATC
* *
86940836 GAATATTCCTTTAGAATTTCACTCGTGTTTTATAAATTCTAAAGCAAGGTGATGTTCAATG
66 GAATATTCCTTTAGAATTTCACTCGTGTTTTATAAATTCTAAAGCAAGGAGATGTTCAATA
* * * *
86940897 TTTGGAAATTTGAGGAATCGTGCCTTACCGTGCTGGGTTTTGATTT
1 TTTGGAAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTTCGATTT
86940943 TTTGTTGGAC
Statistics
Matches: 157, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
125 4 0.03
126 108 0.69
127 45 0.29
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.38
Consensus pattern (126 bp):
TTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCCAGTTTGTCCAAAATAATC
GAATATTCCTTTAGAATTTCACTCGTGTTTTATAAATTCTAAAGCAAGGAGATGTTCAATA
Found at i:86943049 original size:11 final size:11
Alignment explanation
Indices: 86943033--86943075 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
86943023 TAGAATATAC
86943033 CCCATACCTTG
1 CCCATACCTTG
*
86943044 CCCATACCTTT
1 CCCATACCTTG
*
86943055 CCCATACC-TA
1 CCCATACCTTG
86943065 CCCATACCTTG
1 CCCATACCTTG
86943076 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:86943070 original size:21 final size:22
Alignment explanation
Indices: 86943033--86943074 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
86943023 TAGAATATAC
*
86943033 CCCATACCTTGCCCATACCTTT
1 CCCATACCTTACCCATACCTTT
86943055 CCCATACC-TACCCATACCTT
1 CCCATACCTTACCCATACCTT
86943075 GGAAAGGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCATACCTTACCCATACCTTT
Found at i:86943636 original size:18 final size:18
Alignment explanation
Indices: 86943613--86943663 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
86943603 CGTTTACGGT
*
86943613 ACTATTCATGTATACAAC
1 ACTATTCACGTATACAAC
**
86943631 ACTATTCACGTATATGAC
1 ACTATTCACGTATACAAC
*
86943649 ACTATTCACATATAC
1 ACTATTCACGTATAC
86943664 GGTATTGTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (18 bp):
ACTATTCACGTATACAAC
Found at i:86947746 original size:11 final size:11
Alignment explanation
Indices: 86947727--86947769 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
86947717 TAGAATATAC
*
86947727 CCCACACCTTG
1 CCCATACCTTG
*
86947738 CCCATACCTTT
1 CCCATACCTTG
*
86947749 CCCATACC-TA
1 CCCATACCTTG
86947759 CCCATACCTTG
1 CCCATACCTTG
86947770 GAAAGGTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.21, C:0.49, G:0.05, T:0.26
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:86956745 original size:26 final size:26
Alignment explanation
Indices: 86956709--86956818 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
86956699 TGATACAAAT
86956709 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
86956735 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
86956761 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
86956787 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
86956813 TGATAA
1 TGATAA
86956819 GAATTCCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:86958339 original size:26 final size:26
Alignment explanation
Indices: 86958310--86958362 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
86958300 TTTACAGTTT
86958310 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
86958336 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
86958362 T
1 T
86958363 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:86958857 original size:137 final size:137
Alignment explanation
Indices: 86958610--86958896 Score: 477
Period size: 137 Copynumber: 2.1 Consensus size: 137
86958600 GAGTAGTCTC
86958610 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGAGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGAGCCATAC
* * * *
86958675 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGGCTTTGGCGCAGTAT
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTG-AAAAGGGCTCTAGCCCAGTAC
*
86958740 CACTGTTA
130 CACTATTA
* *
86958748 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGAGCCATAC
86958812 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
86958877 ACTATTA
131 ACTATTA
**
86958884 CCTGAATGGGCTT
1 CCCAAATGGGCTT
86958897 AGGCCCAATG
Statistics
Matches: 140, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
136 35 0.25
137 85 0.61
138 20 0.14
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGAGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTATTA
Found at i:86959754 original size:28 final size:27
Alignment explanation
Indices: 86959704--86959756 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
86959694 CTATTCAGAA
* *
86959704 ATCAGTGTTAACTGGGCCTTAGCCCAT
1 ATCAGTATTAACTGGGCCATAGCCCAT
86959731 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTGGGCCATAGCCC
86959757 TATTACAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTGGGCCATAGCCCAT
Found at i:86959759 original size:62 final size:60
Alignment explanation
Indices: 86959681--86959825 Score: 159
Period size: 61 Copynumber: 2.4 Consensus size: 60
86959671 TCAAGCTTTA
* * *
86959681 CTGGGCCTAAGCCCTATT-CAGAAATCAGTG-TTAACTGGGCCTTAGCCCATATCAGTATTAAT
1 CTGGGCCT-AGCCCTATTACA-AAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAGTATCAAT
* * *
86959743 CTGGGCCATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCTATATCAGTATCAGT
1 CTGGGCC-TAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
*
86959804 TTGGGCCGTAGCCCTATTACAA
1 CTGGGCC-TAGCCCTATTACAA
86959826 GTCGAGATAT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
61 37 0.51
62 31 0.43
63 4 0.06
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
CTGGGCCTAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
Found at i:86959900 original size:19 final size:20
Alignment explanation
Indices: 86959858--86959901 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
86959848 CCATATTGAC
** *
86959858 ACAGTTGGGCCCATTTTAAT
1 ACAGTTGGGCCCATAATAAA
86959878 ACAGTT-GGCCCATAATAAA
1 ACAGTTGGGCCCATAATAAA
86959897 ACAGT
1 ACAGT
86959902 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (20 bp):
ACAGTTGGGCCCATAATAAA
Found at i:86965920 original size:111 final size:111
Alignment explanation
Indices: 86965726--86965952 Score: 445
Period size: 111 Copynumber: 2.0 Consensus size: 111
86965716 GTAAAATTTT
*
86965726 AAACCGTAAATTATTTTGGACTTTGTTTTCATTTTAACGTGCTTTTCTGAATTAAGTAGTATTAA
1 AAACCGTAAATTATTTTGGACTTTGTTTTCATTTTAACGTGCTTTTCCGAATTAAGTAGTATTAA
86965791 ATTTCTATTTGCAAAATGATTTGTTGCAAACTAAACATGATTTTCA
66 ATTTCTATTTGCAAAATGATTTGTTGCAAACTAAACATGATTTTCA
86965837 AAACCGTAAATTATTTTGGACTTTGTTTTCATTTTAACGTGCTTTTCCGAATTAAGTAGTATTAA
1 AAACCGTAAATTATTTTGGACTTTGTTTTCATTTTAACGTGCTTTTCCGAATTAAGTAGTATTAA
86965902 ATTTCTATTTGCAAAATGATTTGTTGCAAACTAAACATGATTTTCA
66 ATTTCTATTTGCAAAATGATTTGTTGCAAACTAAACATGATTTTCA
86965948 AAACC
1 AAACC
86965953 TTATAGCTCA
Statistics
Matches: 115, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 115 1.00
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (111 bp):
AAACCGTAAATTATTTTGGACTTTGTTTTCATTTTAACGTGCTTTTCCGAATTAAGTAGTATTAA
ATTTCTATTTGCAAAATGATTTGTTGCAAACTAAACATGATTTTCA
Found at i:86969562 original size:18 final size:19
Alignment explanation
Indices: 86969539--86969583 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
86969529 AATATATTTA
*
86969539 AAAACATAAAAA-AATATT
1 AAAACATAAAAATAATACT
86969557 AAAACAAATAAAAATAATACT
1 AAAAC--ATAAAAATAATACT
86969578 AAAACA
1 AAAACA
86969584 ATTCTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 5 0.22
19 1 0.04
20 7 0.30
21 10 0.43
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (19 bp):
AAAACATAAAAATAATACT
Found at i:86969567 original size:20 final size:21
Alignment explanation
Indices: 86969544--86969584 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
86969534 ATTTAAAAAC
*
86969544 ATAAAAA-AATATTAAAACAA
1 ATAAAAATAATACTAAAACAA
86969564 ATAAAAATAATACTAAAACAA
1 ATAAAAATAATACTAAAACAA
86969585 TTCTTAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (21 bp):
ATAAAAATAATACTAAAACAA
Found at i:86969575 original size:21 final size:21
Alignment explanation
Indices: 86969528--86969584 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
86969518 ATAATAAATC
*
86969528 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
86969548 AAA-AATATTAAAACAAATAA
1 AAATAATATTAAAACAAATAA
*
86969568 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
86969585 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 6 0.19
20 14 0.44
21 12 0.38
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:86971840 original size:40 final size:40
Alignment explanation
Indices: 86971773--86971983 Score: 277
Period size: 40 Copynumber: 5.3 Consensus size: 40
86971763 CCTTCAGGGT
* *
86971773 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGAC
*
86971812 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* *
86971852 TTACCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
86971892 TTAGCCCGGATATAGTAACTCGCACAATTTCCTTCGGG-C
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
86971931 TTAGCCCGG-AATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGAC
86971971 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
86971984 CATCCGAATA
Statistics
Matches: 150, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 37 0.25
40 111 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:86974383 original size:39 final size:40
Alignment explanation
Indices: 86974286--86974495 Score: 277
Period size: 39 Copynumber: 5.3 Consensus size: 40
86974276 ATCTCGGGGT
* *
86974286 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGAC
* *
86974325 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCAGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
86974365 TTA-CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
86974404 TTAGCCCGGATATAGTAACTCGCACAATTTCCTTCGGG-C
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
86974443 TTAGCCCGG-AATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGAC
86974483 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
86974496 CATCCGAATA
Statistics
Matches: 150, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 74 0.49
40 74 0.49
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:86974429 original size:79 final size:79
Alignment explanation
Indices: 86974302--86974491 Score: 267
Period size: 79 Copynumber: 2.4 Consensus size: 79
86974292 GGATATAGCT
* * *
86974302 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCAGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGACTT
*
86974367 A-CCCGG-TTATAGTA
65 AGCCCGGAAT-TAGTA
* * *
86974381 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTTCCTTCGGGCTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTA
*
86974446 GCCCGGAATTAGTC
66 GCCCGGAATTAGTA
*
86974460 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
86974492 TTATCATCCG
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 6 0.06
79 93 0.93
80 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTA
GCCCGGAATTAGTA
Found at i:86982420 original size:39 final size:40
Alignment explanation
Indices: 86982323--86982531 Score: 250
Period size: 39 Copynumber: 5.3 Consensus size: 40
86982313 CCTTCAGGGT
* * *
86982323 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTTGGGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGAC
*
86982362 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
86982402 TTA-CCCGGTTATAGTAACTCGCACAAATGTCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
86982441 TTAGCCCGGATATAGTAACTCGCACAATTTCCTTCGGG-C
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* * * *
86982480 TTAGCCCGG-AATTAGT-CCTAGCACAAATGCCTTCAGGAC
1 TTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGAC
86982519 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
86982532 CATCCAAATA
Statistics
Matches: 147, Mismatches: 17, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
38 17 0.12
39 67 0.46
40 63 0.43
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:86982444 original size:79 final size:78
Alignment explanation
Indices: 86982313--86982531 Score: 248
Period size: 79 Copynumber: 2.8 Consensus size: 78
86982303 AAACCAAGTA
* * *
86982313 CCTTCAGGGTTTAG-CCGG-ATATAGCTACTCGCTCAAATGCCTTTGGGACTTAGCCCGGTTATA
1 CCTTC-GGGCTTAGCCCGGAAT-TAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
86982376 GTAACTTGCACAAATG
63 GTAACTCGCACAAATG
* * *
86982392 CCTTCGGGACTTA-CCCGG-TTATAGTAACTCGCACAAATGTCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGG-CTTAGCCCGGAAT-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
* *
86982455 GTAACTCGCACAATTT
63 GTAACTCGCACAAATG
* * *
86982471 CCTTCGGGCTTAGCCCGGAATTAGTCCTAGCACAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CCTTCGGGCTTAGCCCGGAATTAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
86982532 CATCCAAATA
Statistics
Matches: 120, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 39 0.32
79 80 0.67
80 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (78 bp):
CCTTCGGGCTTAGCCCGGAATTAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
ACTCGCACAAATG
Found at i:86990278 original size:40 final size:40
Alignment explanation
Indices: 86990211--86990421 Score: 241
Period size: 40 Copynumber: 5.3 Consensus size: 40
86990201 CCTTCAGGGT
* * *
86990211 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTTGGGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGAC
*
86990250 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* *
86990290 TTACCCCGGTTATAGTAACTCGCACAAATGTCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* * * *
86990330 TTAGCCCGGATATAGTAACTCGCACAATTTCCTTTGGG-C
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* ** * *
86990369 TTAGCCCGG-AATTAGTCCCTAGCACAAATGCCTTCAGGAC
1 TTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGAC
86990409 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
86990422 CATCCAAATA
Statistics
Matches: 145, Mismatches: 22, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 34 0.23
40 109 0.75
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:86994813 original size:40 final size:40
Alignment explanation
Indices: 86994758--86994899 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
86994748 TATTCGAATG
* *
86994758 ATATCCGGGATAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
86994798 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
86994838 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
86994878 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86994900 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 14 0.15
40 79 0.83
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:86997368 original size:21 final size:19
Alignment explanation
Indices: 86997329--86997373 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 19
86997319 TTTTATTTTA
*
86997329 TTTTATATTATATTATTAG
1 TTTTATATTATAGTATTAG
86997348 TTTTACTATTAGTAGTATTAG
1 TTTTA-TATTA-TAGTATTAG
86997369 TTTTA
1 TTTTA
86997374 GTTTCAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.22
20 5 0.22
21 13 0.57
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (19 bp):
TTTTATATTATAGTATTAG
Found at i:86997533 original size:19 final size:19
Alignment explanation
Indices: 86997473--86997535 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 19
86997463 CTTTTAATGG
*
86997473 ATATTATGTATATATTTGTA
1 ATATTACGTATATATTT-TA
* *
86997493 TATATTATC-TTTA-ACTTT-
1 -ATATTA-CGTATATATTTTA
86997511 ATATTACGTATATATTTTA
1 ATATTACGTATATATTTTA
86997530 ATATTA
1 ATATTA
86997536 TATTATTCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
16 1 0.03
17 9 0.27
18 4 0.12
19 7 0.21
20 3 0.09
21 9 0.27
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (19 bp):
ATATTACGTATATATTTTA
Found at i:86997587 original size:26 final size:25
Alignment explanation
Indices: 86997558--86997627 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 25
86997548 ATTTTATCAC
*
86997558 ATTATATATATATTTTTTATA-ACTAT
1 ATTACATATATA-TTTTTA-ACACTAT
* *
86997584 ATTACGTATGTATTTTTAACACTAT
1 ATTACATATATATTTTTAACACTAT
* * *
86997609 ATTACGTACATACTTTTAA
1 ATTACATATATATTTTTAA
86997628 TATCATTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
24 1 0.03
25 27 0.73
26 9 0.24
ACGTcount: A:0.36, C:0.10, G:0.04, T:0.50
Consensus pattern (25 bp):
ATTACATATATATTTTTAACACTAT
Found at i:86997625 original size:25 final size:25
Alignment explanation
Indices: 86997579--86997627 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
86997569 ATTTTTTATA
** *
86997579 ACTATATTACGTATGTATTTTTAAC
1 ACTATATTACGTACATACTTTTAAC
86997604 ACTATATTACGTACATACTTTTAA
1 ACTATATTACGTACATACTTTTAA
86997628 TATCATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.45
Consensus pattern (25 bp):
ACTATATTACGTACATACTTTTAAC
Found at i:86997760 original size:53 final size:53
Alignment explanation
Indices: 86997655--86997763 Score: 209
Period size: 53 Copynumber: 2.1 Consensus size: 53
86997645 TATTTATTAA
86997655 TATATATATATATGTGCATATTTATATAGTATTATTAATAGTTGTTTTAACAT
1 TATATATATATATGTGCATATTTATATAGTATTATTAATAGTTGTTTTAACAT
*
86997708 TATATATATATGTGTGCATATTTATATAGTATTATTAATAGTTGTTTTAACAT
1 TATATATATATATGTGCATATTTATATAGTATTATTAATAGTTGTTTTAACAT
86997761 TAT
1 TAT
86997764 TATTATTTCT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (53 bp):
TATATATATATATGTGCATATTTATATAGTATTATTAATAGTTGTTTTAACAT
Found at i:86997767 original size:24 final size:24
Alignment explanation
Indices: 86997684--86997768 Score: 75
Period size: 24 Copynumber: 3.3 Consensus size: 24
86997674 ATTTATATAG
86997684 TATTATTAATAGTTGTTTTAACAT
1 TATTATTAATAGTTGTTTTAACAT
* *
86997708 TA-TA-TATATATGTGTGCATATTTATATAG
1 TATTATTA-ATA-GT-TG--T-TTTA-ACAT
86997737 TATTATTAATAGTTGTTTTAACAT
1 TATTATTAATAGTTGTTTTAACAT
86997761 TATTATTA
1 TATTATTA
86997769 TTTCTAATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 18
0.69 0.06 0.26
Matches are distributed among these distances:
22 2 0.04
23 5 0.10
24 14 0.29
25 6 0.12
26 1 0.02
27 1 0.02
28 6 0.12
29 6 0.12
30 5 0.10
31 2 0.04
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.53
Consensus pattern (24 bp):
TATTATTAATAGTTGTTTTAACAT
Found at i:86997858 original size:49 final size:48
Alignment explanation
Indices: 86997785--86997880 Score: 117
Period size: 49 Copynumber: 2.0 Consensus size: 48
86997775 ATATATATAT
* *
86997785 TACGTATATCTTTTTAATATTATGTATACACTTTTTAT-TC-TTATTAC
1 TACGTATATATTTTTAATATTATGTATACA-TTTATATATCGTTATTAC
86997832 TACGTATATATTTTAGTACATA-TATGTATACATTTATATATCGTTATTA
1 TACGTATATATTTT--TA-ATATTATGTATACATTTATATATCGTTATTA
86997881 TTAGTTATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
47 13 0.31
48 6 0.14
49 14 0.33
50 9 0.21
ACGTcount: A:0.31, C:0.10, G:0.06, T:0.52
Consensus pattern (48 bp):
TACGTATATATTTTTAATATTATGTATACATTTATATATCGTTATTAC
Found at i:86999862 original size:18 final size:18
Alignment explanation
Indices: 86999839--86999879 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
86999829 CTCTCTGGAC
86999839 GTTTTGGGATTGT-TTTTG
1 GTTTT-GGATTGTGTTTTG
*
86999857 GTTTTGGATTTTGTTTTG
1 GTTTTGGATTGTGTTTTG
86999875 GTTTT
1 GTTTT
86999880 CTAATCGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.05, C:0.00, G:0.29, T:0.66
Consensus pattern (18 bp):
GTTTTGGATTGTGTTTTG
Found at i:87002772 original size:15 final size:14
Alignment explanation
Indices: 87002752--87002790 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
87002742 GGAAAATAAA
87002752 AATAAAATAAGAAAT
1 AATAAAATAA-AAAT
87002767 AATAAAAT-AAAAT
1 AATAAAATAAAAAT
87002780 AATTAAAATAA
1 AA-TAAAATAA
87002791 TTATTTTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.27
14 7 0.32
15 9 0.41
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (14 bp):
AATAAAATAAAAAT
Found at i:87004983 original size:92 final size:92
Alignment explanation
Indices: 87004848--87005022 Score: 228
Period size: 92 Copynumber: 1.9 Consensus size: 92
87004838 CATATATGGT
* * *
87004848 GTACTGTGCAATGCGGTAGTCCACTGTACAGATGAGTTTCAGTTAAACTGCCAGATCAGATAATA
1 GTACAGTGCAATGCGGTAGTCCACTATACAGATGAGTTGCAGTTAAACTGCCAGATCAGATAATA
* *
87004913 GTACGCAGCAGAGCTAACGTACATACA
66 CTACGCAGCAAAGCTAACGTACATACA
* * *
87004940 GTACAGTGCAATGCGGTAAG-CCGCTATACCGAT-ATGTTGCAGTTAAACTGCCAGATTAGATAA
1 GTACAGTGCAATGCGGT-AGTCCACTATACAGATGA-GTTGCAGTTAAACTGCCAGATCAGATAA
* *
87005003 TACTGCGTAGCAAAGCTAAC
64 TACTACGCAGCAAAGCTAAC
87005023 ACATGTACGG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
91 1 0.01
92 68 0.96
93 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (92 bp):
GTACAGTGCAATGCGGTAGTCCACTATACAGATGAGTTGCAGTTAAACTGCCAGATCAGATAATA
CTACGCAGCAAAGCTAACGTACATACA
Found at i:87005518 original size:21 final size:21
Alignment explanation
Indices: 87005453--87005521 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
87005443 GCATACGGCG
* *
87005453 GTGTGACTGTGGCACACACCC
1 GTGTGACTGAGGCACACGCCC
* * * *
87005474 TTGTGA-AGAGAGTCACATGGCC
1 GTGTGACTGAG-G-CACACGCCC
87005496 GTGTGACTGAGGCACACGCCC
1 GTGTGACTGAGGCACACGCCC
87005517 GTGTG
1 GTGTG
87005522 GACTACGGAC
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
20 2 0.06
21 18 0.51
22 12 0.34
23 3 0.09
ACGTcount: A:0.20, C:0.26, G:0.33, T:0.20
Consensus pattern (21 bp):
GTGTGACTGAGGCACACGCCC
Found at i:87006290 original size:24 final size:23
Alignment explanation
Indices: 87006263--87006320 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
87006253 ATGACCAAGG
*
87006263 AAAAGAAAAAGAAAATAAAAATAA
1 AAAAAAAAAAGAAAAT-AAAATAA
*
87006287 AAAATAAAAAATAAAATAAAATAA
1 AAAA-AAAAAAGAAAATAAAATAA
* *
87006311 ATAAATAAAA
1 AAAAAAAAAA
87006321 CTACAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 5 0.17
24 14 0.48
25 10 0.34
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (23 bp):
AAAAAAAAAAGAAAATAAAATAA
Found at i:87006291 original size:7 final size:7
Alignment explanation
Indices: 87006274--87006315 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
87006264 AAAGAAAAAG
87006274 AAAAT-A
1 AAAATAA
87006280 AAAATAA
1 AAAATAA
87006287 AAAATAA
1 AAAATAA
87006294 AAAATAA
1 AAAATAA
87006301 AATAA-AA
1 AA-AATAA
*
87006308 TAAATAA
1 AAAATAA
87006315 A
1 A
87006316 TAAAACTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
6 7 0.23
7 22 0.71
8 2 0.06
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AAAATAA
Found at i:87006292 original size:13 final size:13
Alignment explanation
Indices: 87006274--87006320 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
87006264 AAAGAAAAAG
87006274 AAAATAAAAATAA
1 AAAATAAAAATAA
*
87006287 AAAATAAAAA-AT
1 AAAATAAAAATAA
87006299 AAAAT-AAAATAA
1 AAAATAAAAATAA
87006311 ATAAATAAAA
1 A-AAATAAAA
87006321 CTACAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 4 0.14
12 8 0.28
13 14 0.48
14 3 0.10
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAATAAAAATAA
Found at i:87006302 original size:25 final size:25
Alignment explanation
Indices: 87006268--87006320 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
87006258 CAAGGAAAAG
87006268 AAAAAGAAAATAAAAATAAA-AAATA
1 AAAAAGAAAAT-AAAATAAATAAATA
*
87006293 AAAAATAAAATAAAATAAATAAATA
1 AAAAAGAAAATAAAATAAATAAATA
87006318 AAA
1 AAA
87006321 CTACAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (25 bp):
AAAAAGAAAATAAAATAAATAAATA
Found at i:87008632 original size:2 final size:2
Alignment explanation
Indices: 87008625--87008657 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
87008615 TGAAGAATAA
87008625 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87008658 ATAGTCTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.