Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 29 of 335
Found at i:10574515 original size:12 final size:12
Alignment explanation
Indices: 10574500--10574525 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10574490 TAAAATAATT
10574500 ATATGCAAAAGG
1 ATATGCAAAAGG
10574512 ATATGCAAAAGG
1 ATATGCAAAAGG
10574524 AT
1 AT
10574526 TTTATAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.23, T:0.19
Consensus pattern (12 bp):
ATATGCAAAAGG
Found at i:10577575 original size:190 final size:189
Alignment explanation
Indices: 10577252--10577626 Score: 669
Period size: 190 Copynumber: 2.0 Consensus size: 189
10577242 ACAAGATCTC
* *
10577252 TAAAGAAATATCTGAAATAAAAATTAGATAGAATATTTCTTTAATTTCATTTATGTGACGGGCTT
1 TAAAGAAATATCTGAAATAAAAATTAGATAGAATATTGCTTTAATTTCATTTATGTGAAGGGCTT
*
10577317 CTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTTAGGTTATATAAGGGCATTGATA
66 CTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTAAGGTTATATAAGGGCATTGATA
10577382 CTGTCTGGTTTCTTTTGTCATAAGAGGCGGATATAAGCTTATTGTACAGGGATTCTAAAA
131 CTGTCTGGTTTCTTTTGTCATAAGA-GCGGATATAAGCTTATTGTACAGGGATTCTAAAA
**
10577442 TAAAGAAATATCTGAAATAAAAATTAGATAGAATATTGCTTTAATTTCATTTATGTGAAGGTTTT
1 TAAAGAAATATCTGAAATAAAAATTAGATAGAATATTGCTTTAATTTCATTTATGTGAAGGGCTT
*
10577507 TTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTAAGGTTATATAAGGGCATTGATA
66 CTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTAAGGTTATATAAGGGCATTGATA
* *
10577572 CTGTCTGGTTTCTTTTGTCATAAGAGCGTATCTAAGCTTATTGTACAGGGATTCT
131 CTGTCTGGTTTCTTTTGTCATAAGAGCGGATATAAGCTTATTGTACAGGGATTCT
10577627 GAGATGACTC
Statistics
Matches: 177, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
189 28 0.16
190 149 0.84
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (189 bp):
TAAAGAAATATCTGAAATAAAAATTAGATAGAATATTGCTTTAATTTCATTTATGTGAAGGGCTT
CTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTAAGGTTATATAAGGGCATTGATA
CTGTCTGGTTTCTTTTGTCATAAGAGCGGATATAAGCTTATTGTACAGGGATTCTAAAA
Found at i:10578651 original size:6 final size:6
Alignment explanation
Indices: 10578642--10578673 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
10578632 AAAAAGAGAC
*
10578642 AAAAAG AAAAAG AAAAAG AAAAAG AAACAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
10578674 TCTTAATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.81, C:0.03, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:10578768 original size:115 final size:115
Alignment explanation
Indices: 10578566--10578776 Score: 361
Period size: 115 Copynumber: 1.8 Consensus size: 115
10578556 ACTTTGTAAG
* * * *
10578566 AGTCATATGCATTTCTTTTGAAATCTCGAGGTTGACTGAGCAATATAACTCTGGTTATACACCAA
1 AGTCATATGCAGTTCTTTTAAAATCTCGAAGTTGACAGAGCAATATAACTCTGGTTATACACCAA
*
10578631 GAAAAAGAGACAAAAAGAAAAAGAAAAAGAAAAAGAAACAGAATCTTAAT
66 GAAAAAGAGAAAAAAAGAAAAAGAAAAAGAAAAAGAAACAGAATCTTAAT
10578681 AGTCATATGCAGTTCTTTTAAAATCTCGAAGTTGACAGAGCAATATAACTCTGGTTATACA-CAG
1 AGTCATATGCAGTTCTTTTAAAATCTCGAAGTTGACAGAGCAATATAACTCTGGTTATACACCA-
10578745 AGAAAAAGAGAAAAAAAGAAAAAGAAAAAGAA
65 AGAAAAAGAGAAAAAAAGAAAAAGAAAAAGAA
10578777 TCTTATGCCA
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
114 2 0.02
115 88 0.98
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (115 bp):
AGTCATATGCAGTTCTTTTAAAATCTCGAAGTTGACAGAGCAATATAACTCTGGTTATACACCAA
GAAAAAGAGAAAAAAAGAAAAAGAAAAAGAAAAAGAAACAGAATCTTAAT
Found at i:10592897 original size:105 final size:105
Alignment explanation
Indices: 10592708--10592913 Score: 313
Period size: 105 Copynumber: 2.0 Consensus size: 105
10592698 ACCGAAGAGC
* * * * *
10592708 TTTCTTTCAAAGGCGTATCTTTGTGCTGGTCATTTTAGCTCATTTCATTTTTAGATTCCTCCTTG
1 TTTCATTCAAAAGCGTATCTTTGTGCCGATCATTTCAGCTCATTTCATTTTTAGATTCCTCCTTG
*
10592773 GCTTCTTGATTTTACTTTGTGATTGTTGAGAAGCTTGAGT
66 GCTTCTTGATTTTACTTTGTGATTGCTGAGAAGCTTGAGT
* *
10592813 TTTCATTCAAAAGTGTATCTTTTTGCCGATCATTTCAGCTCATTTCATTTTTAGATTCCTCCTTG
1 TTTCATTCAAAAGCGTATCTTTGTGCCGATCATTTCAGCTCATTTCATTTTTAGATTCCTCCTTG
* * *
10592878 GCTTCTTGCTTTTATTTTGTGATTGCTGAGATGCTT
66 GCTTCTTGATTTTACTTTGTGATTGCTGAGAAGCTT
10592914 TCAATCTGTT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
105 90 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (105 bp):
TTTCATTCAAAAGCGTATCTTTGTGCCGATCATTTCAGCTCATTTCATTTTTAGATTCCTCCTTG
GCTTCTTGATTTTACTTTGTGATTGCTGAGAAGCTTGAGT
Found at i:10598147 original size:17 final size:16
Alignment explanation
Indices: 10598125--10598156 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10598115 CTGTTGTGTT
10598125 TTATTATTGGTTATTTA
1 TTATTATT-GTTATTTA
10598142 TTATTATTGTTATTT
1 TTATTATTGTTATTT
10598157 TGTTCATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (16 bp):
TTATTATTGTTATTTA
Found at i:10600550 original size:32 final size:32
Alignment explanation
Indices: 10600509--10600569 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
10600499 TCGTGTGGCT
*
10600509 TCTACAGCTTGCTCCGAAGATTTGATTTTCAC
1 TCTACAGCTTACTCCGAAGATTTGATTTTCAC
*
10600541 TCTACAGCTTACTCCGATGATTTGATTTT
1 TCTACAGCTTACTCCGAAGATTTGATTTT
10600570 TGCTCCCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (32 bp):
TCTACAGCTTACTCCGAAGATTTGATTTTCAC
Found at i:10608647 original size:2 final size:2
Alignment explanation
Indices: 10608640--10608669 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10608630 TTTGATTTAA
10608640 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10608670 CATAATCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10609770 original size:2 final size:2
Alignment explanation
Indices: 10609763--10609803 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
10609753 TAAAGGGAAA
10609763 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
10609804 AACTCTCTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10609811 original size:2 final size:2
Alignment explanation
Indices: 10609806--10609838 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
10609796 CACACACAAA
10609806 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
10609839 ATCATTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:10611059 original size:11 final size:11
Alignment explanation
Indices: 10611043--10611067 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10611033 CTTTCCTGCT
10611043 TTTTTTTTTTC
1 TTTTTTTTTTC
10611054 TTTTTTTTTTC
1 TTTTTTTTTTC
10611065 TTT
1 TTT
10611068 CATGTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:10623574 original size:29 final size:28
Alignment explanation
Indices: 10623511--10623574 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 28
10623501 TTGCAATATG
*
10623511 TATGTTTAAAATGAAATTATAATGATAA
1 TATGTTTAAAATAAAATTATAATGATAA
*
10623539 CACTGTTTAAAATAAAATTATAATGATAA
1 TA-TGTTTAAAATAAAATTATAATGATAA
10623568 TTATGTT
1 -TATGTT
10623575 AATAATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 1 0.03
29 29 0.94
30 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.41
Consensus pattern (28 bp):
TATGTTTAAAATAAAATTATAATGATAA
Found at i:10623822 original size:102 final size:102
Alignment explanation
Indices: 10623716--10623919 Score: 390
Period size: 102 Copynumber: 2.0 Consensus size: 102
10623706 AAGTCAATTT
10623716 TTAAAATTTATGATTTAAAAAATATTATTTATTATATAATAGAATTAATGTTTTGAATTTCTTTA
1 TTAAAATTTATGATTTAAAAAATATTATTTATTATATAATAGAATTAATGTTTTGAATTTCTTTA
10623781 TAGTTATATAGATTCAACAACGCACTGAAGCATTATA
66 TAGTTATATAGATTCAACAACGCACTGAAGCATTATA
*
10623818 TTAAAATTTATGATTTAAAAAATATTATTTATTATCTAATAGAATTAATGTTTTGAATTTCTTTA
1 TTAAAATTTATGATTTAAAAAATATTATTTATTATATAATAGAATTAATGTTTTGAATTTCTTTA
*
10623883 TAGTTATATAGATTCAACAATGCACTGAAGCATTATA
66 TAGTTATATAGATTCAACAACGCACTGAAGCATTATA
10623920 AAATTGTAAA
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.44
Consensus pattern (102 bp):
TTAAAATTTATGATTTAAAAAATATTATTTATTATATAATAGAATTAATGTTTTGAATTTCTTTA
TAGTTATATAGATTCAACAACGCACTGAAGCATTATA
Found at i:10624174 original size:22 final size:23
Alignment explanation
Indices: 10624149--10624191 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
10624139 AGTTTATACC
*
10624149 ATTTGTTTTG-TATTTTTTAATA
1 ATTTGTTTTGTTATGTTTTAATA
*
10624171 ATTTTTTTTGTTATGTTTTAA
1 ATTTGTTTTGTTATGTTTTAA
10624192 AAAAAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (23 bp):
ATTTGTTTTGTTATGTTTTAATA
Found at i:10628262 original size:65 final size:65
Alignment explanation
Indices: 10628181--10628306 Score: 207
Period size: 65 Copynumber: 1.9 Consensus size: 65
10628171 GTCTCTTTAC
* * *
10628181 TTAGAAATTGAGTAAATTAGTATCTTTATATTATACTTATTTTGGTGATTTATATAATAATAGAT
1 TTAGAAATTAAGTAAATTAGTATCTTTATATTATACTTATTTGGGTAATTTATATAATAATAGAT
* *
10628246 TTAGAAATTAAGTAAATTAGTCTCTTTGTATTATACTTATTTGGGTAATTTATATAATAAT
1 TTAGAAATTAAGTAAATTAGTATCTTTATATTATACTTATTTGGGTAATTTATATAATAAT
10628307 GGTAAATTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (65 bp):
TTAGAAATTAAGTAAATTAGTATCTTTATATTATACTTATTTGGGTAATTTATATAATAATAGAT
Found at i:10638600 original size:33 final size:33
Alignment explanation
Indices: 10638563--10638686 Score: 221
Period size: 33 Copynumber: 3.8 Consensus size: 33
10638553 CTCTGTTTCA
10638563 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
10638596 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
10638629 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
* *
10638662 GGTTGCTGGACAGTAGCTAGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
10638687 CAAGAAGAAA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 87 1.00
ACGTcount: A:0.19, C:0.10, G:0.42, T:0.30
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:10643083 original size:50 final size:50
Alignment explanation
Indices: 10643024--10643145 Score: 219
Period size: 50 Copynumber: 2.5 Consensus size: 50
10643014 CGGATAATTA
* *
10643024 GAAT-CCAAAATAACCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
1 GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
10643073 GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
1 GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
10643123 GAATCCCAAAATGATCTGAATGT
1 GAATCCCAAAATGATCTGAATGT
10643146 AAATATGTGC
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
49 4 0.06
50 66 0.94
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (50 bp):
GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
Found at i:10652761 original size:30 final size:30
Alignment explanation
Indices: 10652725--10652781 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
10652715 TGTAATCAAG
*
10652725 GAACCCTAAGTCATCTAATTTTTATTCCTT
1 GAACCCTAAATCATCTAATTTTTATTCCTT
*
10652755 GAACCCTAAATTATCTAATTTTTATTC
1 GAACCCTAAATCATCTAATTTTTATTC
10652782 TTTCTCAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (30 bp):
GAACCCTAAATCATCTAATTTTTATTCCTT
Found at i:10653445 original size:46 final size:46
Alignment explanation
Indices: 10653378--10653470 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
10653368 CATGCTTATG
10653378 ACGTGAAGAATACCTTGATATTCAATGCATTTGTCATGTGTCAGGT
1 ACGTGAAGAATACCTTGATATTCAATGCATTTGTCATGTGTCAGGT
10653424 ACGTGAAGAATACCTTGATATTCAATGCATTTGTCATGTGTCAGGT
1 ACGTGAAGAATACCTTGATATTCAATGCATTTGTCATGTGTCAGGT
10653470 A
1 A
10653471 AGTACTTGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (46 bp):
ACGTGAAGAATACCTTGATATTCAATGCATTTGTCATGTGTCAGGT
Found at i:10662611 original size:45 final size:45
Alignment explanation
Indices: 10662547--10662688 Score: 203
Period size: 45 Copynumber: 3.1 Consensus size: 45
10662537 TCCCATCCAC
10662547 GGTCTTATTTATCTTTGACATGATGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTTATCTTTGACATGATGCCATAGTGTCTTTCAACTAT
10662592 GGTCTTATTTATCTTTGACATGATGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTTATCTTTGACATGATGCCATAGTGTCTTTCAACTAT
* * * * * * * *
10662637 GGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTTATCTT-TGACATGATGCCATAGTGTCTTTCAACTAT
10662683 GGTCTT
1 GGTCTT
10662689 GTTCATTTCA
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 57 0.65
46 31 0.35
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (45 bp):
GGTCTTATTTATCTTTGACATGATGCCATAGTGTCTTTCAACTAT
Found at i:10662629 original size:22 final size:22
Alignment explanation
Indices: 10662558--10662629 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
10662548 GTCTTATTTA
10662558 TCTTTGACATGATGCCATAGTG
1 TCTTTGACATGATGCCATAGTG
* * * * *
10662580 TCTTTCA-ACT-ATGGTCTTATTTA
1 TCTTTGACA-TGAT-GCCATA-GTG
10662603 TCTTTGACATGATGCCATAGTG
1 TCTTTGACATGATGCCATAGTG
10662625 TCTTT
1 TCTTT
10662630 CAACTATGGT
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
21 3 0.09
22 17 0.49
23 12 0.34
24 3 0.09
ACGTcount: A:0.21, C:0.18, G:0.17, T:0.44
Consensus pattern (22 bp):
TCTTTGACATGATGCCATAGTG
Found at i:10662685 original size:46 final size:46
Alignment explanation
Indices: 10662615--10662980 Score: 536
Period size: 46 Copynumber: 8.0 Consensus size: 46
10662605 TTTGACATGA
* * * * * *
10662615 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** * *
10662661 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATAACACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10662707 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
10662753 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
10662799 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
10662845 TGCCATGGTAACTTTCAACCATGGTCTTACACATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
10662891 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
10662937 TGCCATGGTATATTTCAATCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
10662981 AGAGCACACT
Statistics
Matches: 295, Mismatches: 24, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.01
46 291 0.99
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:10665772 original size:46 final size:49
Alignment explanation
Indices: 10665642--10665779 Score: 182
Period size: 46 Copynumber: 2.9 Consensus size: 49
10665632 TTACACGGGC
10665642 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTA
* * *
10665693 GTT-ACAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTA
10665736 -TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
10665780 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 2 0.03
45 2 0.03
46 29 0.38
47 29 0.38
48 2 0.03
49 1 0.01
50 3 0.04
51 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTA
Found at i:10665798 original size:46 final size:44
Alignment explanation
Indices: 10665655--10665798 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
10665645 CGCATCCATA
10665655 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
10665702 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
10665748 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
10665794 AGTGA
1 AGTGA
10665799 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:10669493 original size:19 final size:18
Alignment explanation
Indices: 10669457--10669517 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 18
10669447 AGATGACTAT
*
10669457 ATAAAAAAT-TTTAATAA
1 ATAAAAAATATTAAATAA
10669474 ATAAAAAATATTAAAT--
1 ATAAAAAATATTAAATAA
10669490 -TAAAATAATA-TAAATAA
1 ATAAAA-AATATTAAATAA
10669507 ATTAAAAAATA
1 A-TAAAAAATA
10669518 AAAAATGATA
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
15 10 0.27
16 4 0.11
17 9 0.24
18 9 0.24
19 5 0.14
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAAAAATATTAAATAA
Found at i:10669507 original size:14 final size:14
Alignment explanation
Indices: 10669470--10669520 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
10669460 AAAAATTTTA
10669470 ATAAATAAAA-AAT
1 ATAAATAAAATAAT
10669483 ATTAAATTAAAATAAT
1 A-TAAA-TAAAATAAT
*
10669499 ATAAATAAATTAA-
1 ATAAATAAAATAAT
10669512 A-AAATAAAA
1 ATAAATAAAA
10669521 AATGATATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
12 7 0.21
13 2 0.06
14 11 0.33
15 9 0.27
16 4 0.12
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
ATAAATAAAATAAT
Found at i:10669523 original size:19 final size:19
Alignment explanation
Indices: 10669472--10669521 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
10669462 AAATTTTAAT
10669472 AAATAA-AAAATATTAAATTA
1 AAATAATAAAA-A-TAAATTA
*
10669492 AAATAATATAAATAAATTA
1 AAATAATAAAAATAAATTA
10669511 AAA-AATAAAAA
1 AAATAATAAAAA
10669522 ATGATATGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 7 0.26
19 10 0.37
20 7 0.26
21 3 0.11
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
AAATAATAAAAATAAATTA
Found at i:10679124 original size:14 final size:14
Alignment explanation
Indices: 10679105--10679133 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10679095 AAACACCACA
10679105 ACGAACCAATTAAG
1 ACGAACCAATTAAG
10679119 ACGAACCAATTAAG
1 ACGAACCAATTAAG
10679133 A
1 A
10679134 TTTTAGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.14
Consensus pattern (14 bp):
ACGAACCAATTAAG
Found at i:10682439 original size:16 final size:17
Alignment explanation
Indices: 10682418--10682450 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10682408 ACTCATTCTA
*
10682418 TATATAATAAT-TTTAT
1 TATATAACAATATTTAT
10682434 TATATAACAATATTTAT
1 TATATAACAATATTTAT
10682451 ATAACATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (17 bp):
TATATAACAATATTTAT
Found at i:10682453 original size:16 final size:15
Alignment explanation
Indices: 10682416--10682462 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
10682406 TAACTCATTC
*
10682416 TATATATAATAATTT
1 TATATATAACAATTT
*
10682431 TATTATATAACAATAT
1 TA-TATATAACAATTT
*
10682447 T-TATATAACATTTT
1 TATATATAACAATTT
10682461 TA
1 TA
10682463 AACGTTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.46
15 2 0.08
16 12 0.46
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (15 bp):
TATATATAACAATTT
Found at i:10683895 original size:3 final size:3
Alignment explanation
Indices: 10683889--10683917 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10683879 CCTTCATCAT
10683889 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10683918 TACAAAACTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10688975 original size:34 final size:34
Alignment explanation
Indices: 10688932--10689003 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
10688922 TCTAATCACC
10688932 GACCACTTCTGTTAAAGCAGTGTCACAAACATCA
1 GACCACTTCTGTTAAAGCAGTGTCACAAACATCA
10688966 GACCACTTCTGTTAAAGCAGTGTCACAAACATCA
1 GACCACTTCTGTTAAAGCAGTGTCACAAACATCA
10689000 GACC
1 GACC
10689004 TTATAAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (34 bp):
GACCACTTCTGTTAAAGCAGTGTCACAAACATCA
Found at i:10689304 original size:4 final size:4
Alignment explanation
Indices: 10689297--10689332 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
10689287 AGCATGCATG
* *
10689297 CATA CATA CATA CATT CATA CACA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA
10689333 TGCATATGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:10689659 original size:2 final size:2
Alignment explanation
Indices: 10689652--10689681 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10689642 ATAAACATGC
10689652 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10689682 GAAAATCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10692538 original size:13 final size:12
Alignment explanation
Indices: 10692515--10692548 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
10692505 GGAAGTAAAG
10692515 AAAGTAAAAAGAA
1 AAAG-AAAAAGAA
10692528 AAGAGAAAAAGAA
1 AA-AGAAAAAGAA
10692541 AAAGAAAA
1 AAAGAAAA
10692549 GGCAAAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.30
13 12 0.60
14 2 0.10
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (12 bp):
AAAGAAAAAGAA
Found at i:10692540 original size:6 final size:6
Alignment explanation
Indices: 10692515--10692548 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
10692505 GGAAGTAAAG
10692515 AAAGTAA AAAGAA AAGAGAA AAAGAA AAAGAA AA
1 AAAG-AA AAAGAA AA-AGAA AAAGAA AAAGAA AA
10692549 GGCAAAGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:10692543 original size:14 final size:13
Alignment explanation
Indices: 10692520--10692548 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10692510 TAAAGAAAGT
10692520 AAAAAGAAAAGAG
1 AAAAAGAAAAGAG
10692533 AAAAAGAAAA-AG
1 AAAAAGAAAAGAG
10692545 AAAA
1 AAAA
10692549 GGCAAAGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAGAG
Found at i:10693866 original size:3 final size:3
Alignment explanation
Indices: 10693855--10693887 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
10693845 AAAGTAGTAG
*
10693855 TGA TAA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
10693888 AACCAGACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:10704572 original size:12 final size:12
Alignment explanation
Indices: 10704555--10704579 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10704545 GTAGAGGTGG
10704555 TGATGGGGGAGA
1 TGATGGGGGAGA
10704567 TGATGGGGGAGA
1 TGATGGGGGAGA
10704579 T
1 T
10704580 ACATAACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.56, T:0.20
Consensus pattern (12 bp):
TGATGGGGGAGA
Found at i:10705327 original size:18 final size:18
Alignment explanation
Indices: 10705306--10705371 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 18
10705296 AATCCGCATA
10705306 TATTATTAAATTTTATAT
1 TATTATTAAATTTTATAT
* *
10705324 TATT-TTTAATTTT-TAA
1 TATTATTAAATTTTATAT
*
10705340 T-TTATT-AATTTTTTAT
1 TATTATTAAATTTTATAT
**
10705356 TAAGATTAAATTTTAT
1 TATTATTAAATTTTAT
10705372 TAATTTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
15 8 0.21
16 8 0.21
17 11 0.29
18 11 0.29
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TATTATTAAATTTTATAT
Found at i:10709952 original size:18 final size:18
Alignment explanation
Indices: 10709931--10709965 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10709921 GTGTTTTTTA
*
10709931 TTTTTAAATTTTTTTAAC
1 TTTTTAAACTTTTTTAAC
*
10709949 TTTTTATACTTTTTTAA
1 TTTTTAAACTTTTTTAA
10709966 AGACATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTAAACTTTTTTAAC
Found at i:10711538 original size:16 final size:16
Alignment explanation
Indices: 10711517--10711552 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
10711507 GAAATACCGT
*
10711517 TTGAATTTAAATTCTC
1 TTGAATTTAAATTATC
*
10711533 TTGAATTTGAATTATC
1 TTGAATTTAAATTATC
10711549 TTGA
1 TTGA
10711553 TAATTCAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.50
Consensus pattern (16 bp):
TTGAATTTAAATTATC
Found at i:10724345 original size:22 final size:22
Alignment explanation
Indices: 10724318--10724362 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
10724308 ATTATAAGTG
10724318 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
10724340 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
10724362 T
1 T
10724363 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:10728868 original size:22 final size:22
Alignment explanation
Indices: 10728840--10728884 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
10728830 AGGGGGAGTG
10728840 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
10728862 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
10728884 T
1 T
10728885 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:10736380 original size:14 final size:15
Alignment explanation
Indices: 10736355--10736383 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
10736345 TTAAAATTTT
10736355 AAATTAGTAAAAATA
1 AAATTAGTAAAAATA
10736370 AAATTAG-AAAAATA
1 AAATTAGTAAAAATA
10736384 TAAAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (15 bp):
AAATTAGTAAAAATA
Found at i:10744113 original size:18 final size:16
Alignment explanation
Indices: 10744076--10744120 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
10744066 TGACATCAAC
*
10744076 TTAAATATTTTTTCCT
1 TTAAATATTTTTTCCA
10744092 TTAAATATTTCATTTCCA
1 TTAAATATTT--TTTCCA
10744110 TTAAA-ATTTTT
1 TTAAATATTTTT
10744121 ATTAAATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 2 0.08
16 10 0.38
17 4 0.15
18 10 0.38
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAAATATTTTTTCCA
Found at i:10747240 original size:63 final size:61
Alignment explanation
Indices: 10747100--10747218 Score: 145
Period size: 63 Copynumber: 2.0 Consensus size: 61
10747090 CGATTCAATA
* * *
10747100 TTAAATA-TAAAAAATTTAATAAATTTAACTCCTAATATTTACAAAATATATCAATTTAGT
1 TTAAATATTAAAAAATTCAATAAATTTAACTCCTAACATTTACAAAATATATAAATTTAGT
* *
10747160 TTAAATTATTAAAAAAATTCAAT-AATTTTAGTCCTCAACATTTACAAAATA-ATAAATTT
1 TTAAA-TATT-AAAAAATTCAATAAATTTAACTCCT-AACATTTACAAAATATATAAATTT
10747219 TTATTTTTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
60 5 0.10
61 2 0.04
62 18 0.36
63 25 0.50
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.39
Consensus pattern (61 bp):
TTAAATATTAAAAAATTCAATAAATTTAACTCCTAACATTTACAAAATATATAAATTTAGT
Found at i:10760469 original size:50 final size:50
Alignment explanation
Indices: 10760394--10760570 Score: 255
Period size: 50 Copynumber: 3.5 Consensus size: 50
10760384 CCATGGAAAC
10760394 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
* * * * *
10760444 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAAGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
*
10760494 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGGCAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
* * * *
10760544 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
10760571 CTGATCAGTG
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 89 0.80
51 22 0.20
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
Found at i:10760586 original size:31 final size:31
Alignment explanation
Indices: 10760548--10760749 Score: 269
Period size: 31 Copynumber: 6.5 Consensus size: 31
10760538 AAATGACAAC
10760548 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
10760579 TGAAAAGTGGTAGTTTCAGCTACCTGCTCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* * * *
10760610 TGAAAAGTGGTAGTTTCTGCTACCTAATTAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
10760641 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* * *
10760672 TGAAAAGTGATAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* ** *
10760703 TGAAAAATGGTAGCACCAACTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
10760734 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
10760750 TGGCTACAAG
Statistics
Matches: 150, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 150 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:10760842 original size:47 final size:48
Alignment explanation
Indices: 10760773--10760898 Score: 159
Period size: 47 Copynumber: 2.7 Consensus size: 48
10760763 CAAGTGATTT
* *
10760773 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
10760820 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* *
10760868 C-GTGTAAGACCATAGT-TGGGCTATGGCATCA
1 CTGTATAAGACCATA-TCTGGGATATGGCATCA
10760899 TTATGTAAAG
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
47 65 0.94
48 4 0.06
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:10769038 original size:19 final size:19
Alignment explanation
Indices: 10768996--10769037 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
10768986 TATGTATGAG
*
10768996 TTTTTAGTTTAATTAGTTT
1 TTTTTAATTTAATTAGTTT
*
10769015 GTTTTAATTT-ATTAGTTT
1 TTTTTAATTTAATTAGTTT
10769033 TTTTT
1 TTTTT
10769038 TTGTATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.19, C:0.00, G:0.10, T:0.71
Consensus pattern (19 bp):
TTTTTAATTTAATTAGTTT
Found at i:10771489 original size:21 final size:21
Alignment explanation
Indices: 10771465--10771507 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
10771455 ATTCCCCTTC
10771465 ATACAAGGATTCTAATCCTAT
1 ATACAAGGATTCTAATCCTAT
10771486 ATACAAGGATTCTAATCCTAT
1 ATACAAGGATTCTAATCCTAT
10771507 A
1 A
10771508 CTATGTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (21 bp):
ATACAAGGATTCTAATCCTAT
Found at i:10772586 original size:14 final size:16
Alignment explanation
Indices: 10772567--10772602 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
10772557 ACTTTAATTC
10772567 TTAAATAAA-A-ATAA
1 TTAAATAAATATATAA
10772581 TTAAATAAATATATAA
1 TTAAATAAATATATAA
10772597 TTAAAT
1 TTAAAT
10772603 CTTAGTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 10 0.50
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TTAAATAAATATATAA
Found at i:10775446 original size:27 final size:27
Alignment explanation
Indices: 10775408--10775462 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
10775398 TTTGGATAAG
10775408 AAAGAATTTCAGTGCTGAAGAAGCGCC
1 AAAGAATTTCAGTGCTGAAGAAGCGCC
10775435 AAAGAATTTCAGTGCTGAAGAAGCGCC
1 AAAGAATTTCAGTGCTGAAGAAGCGCC
10775462 A
1 A
10775463 TCATTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.18
Consensus pattern (27 bp):
AAAGAATTTCAGTGCTGAAGAAGCGCC
Found at i:10775947 original size:55 final size:55
Alignment explanation
Indices: 10775838--10775957 Score: 143
Period size: 55 Copynumber: 2.2 Consensus size: 55
10775828 TCATTTCAGC
* * *
10775838 AAGTAATATTTTAACATAATAACCAATTTAAATATATAAACAATCTAATTAAAAG
1 AAGTAATATTTTAACATAATAACCAATTTAAACATAAAAACAATCTAATCAAAAG
* * *** *
10775893 GAGTAATATTTTAACATGATAATTGATTTAAACATAAAAACAAT-TGATCCAAAAG
1 AAGTAATATTTTAACATAATAACCAATTTAAACATAAAAACAATCTAAT-CAAAAG
10775948 AAGTAATATT
1 AAGTAATATT
10775958 CCAGCACAAC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 3 0.06
55 51 0.94
ACGTcount: A:0.52, C:0.08, G:0.07, T:0.33
Consensus pattern (55 bp):
AAGTAATATTTTAACATAATAACCAATTTAAACATAAAAACAATCTAATCAAAAG
Found at i:10794717 original size:13 final size:13
Alignment explanation
Indices: 10794699--10794723 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10794689 TATTATAGGA
10794699 AATAAATAAAATC
1 AATAAATAAAATC
10794712 AATAAATAAAAT
1 AATAAATAAAAT
10794724 ATACATGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
AATAAATAAAATC
Found at i:10794821 original size:28 final size:27
Alignment explanation
Indices: 10794778--10794832 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 27
10794768 TTAATTACTT
10794778 TTTATTTAAGTAAAAAGATATTTATTA
1 TTTATTTAAGTAAAAAGATATTTATTA
*
10794805 TTTATTATAAGTTAAAAGATATTTATTA
1 TTTATT-TAAGTAAAAAGATATTTATTA
10794833 ATTAAATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (27 bp):
TTTATTTAAGTAAAAAGATATTTATTA
Found at i:10794992 original size:21 final size:21
Alignment explanation
Indices: 10794955--10795015 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
10794945 TTTATACTTG
*
10794955 TTATTAAA-TAGATATTTATTA
1 TTATTAAATTATATATTTA-TA
10794976 TTATTAAATTATA-ATTTATA
1 TTATTAAATTATATATTTATA
*
10794996 TTAATTATATTATGATATTT
1 TT-ATTAAATTAT-ATATTT
10795016 TTATAGGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 4 0.12
21 22 0.65
22 4 0.12
23 4 0.12
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (21 bp):
TTATTAAATTATATATTTATA
Found at i:10795690 original size:17 final size:18
Alignment explanation
Indices: 10795668--10795703 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
10795658 TAAATGAGTT
10795668 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
10795685 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
10795703 A
1 A
10795704 GAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:10796023 original size:12 final size:12
Alignment explanation
Indices: 10796008--10796040 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
10795998 AAATTGAAGG
10796008 TGAAAGTGAAAT
1 TGAAAGTGAAAT
*
10796020 TGAAATTGAAAT
1 TGAAAGTGAAAT
10796032 TGAAAGTGA
1 TGAAAGTGA
10796041 TAGGAATTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.27
Consensus pattern (12 bp):
TGAAAGTGAAAT
Found at i:10796029 original size:18 final size:18
Alignment explanation
Indices: 10795998--10796036 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
10795988 TTTGCGATCA
*
10795998 AAATTGAAGGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
* *
10796016 AAATTGAAATTGAAATTG
1 AAATTGAAAGTGAAAGTG
10796034 AAA
1 AAA
10796037 GTGATAGGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:10797437 original size:22 final size:20
Alignment explanation
Indices: 10797409--10797449 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
10797399 AGTGCAATTG
10797409 TTATTTTGTTAACACTTTAAAA
1 TTATTTTGTTAA-A-TTTAAAA
10797431 TTATTTTGTTAAATTTAAA
1 TTATTTTGTTAAATTTAAA
10797450 TTTTTTACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 1 0.05
22 12 0.63
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
TTATTTTGTTAAATTTAAAA
Found at i:10797659 original size:2 final size:2
Alignment explanation
Indices: 10797652--10797678 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10797642 TATCCCAATT
10797652 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
10797679 CAAAATTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10801101 original size:20 final size:20
Alignment explanation
Indices: 10801076--10801113 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10801066 GCACTTTTAG
*
10801076 TTCTTTTATATATTTATATA
1 TTCTTTTATAAATTTATATA
10801096 TTCTTTTATAAATTTATA
1 TTCTTTTATAAATTTATA
10801114 ATTTTTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (20 bp):
TTCTTTTATAAATTTATATA
Found at i:10803296 original size:92 final size:92
Alignment explanation
Indices: 10803139--10803323 Score: 343
Period size: 92 Copynumber: 2.0 Consensus size: 92
10803129 AAAATATATC
*
10803139 ACTTGTTTTAAAATTAAATTAACTGATCGAACTAATTAGATTGGAATCGATCCATTACTAATAAA
1 ACTTGTTTTAAAATTAAATTAACTGATCGAACTAATTAAATTGGAATCGATCCATTACTAATAAA
10803204 AATTCGTTTAAATCATGAATCAATAAA
66 AATTCGTTTAAATCATGAATCAATAAA
*
10803231 ACTTGTTTTAAAATTAAATTAACTGATCGAACTAATTAAATTGGAATCGATCTATTACTAATAAA
1 ACTTGTTTTAAAATTAAATTAACTGATCGAACTAATTAAATTGGAATCGATCCATTACTAATAAA
*
10803296 AATTGGTTTAAATCATGAATCAATAAA
66 AATTCGTTTAAATCATGAATCAATAAA
10803323 A
1 A
10803324 TTTATAATTA
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 90 1.00
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (92 bp):
ACTTGTTTTAAAATTAAATTAACTGATCGAACTAATTAAATTGGAATCGATCCATTACTAATAAA
AATTCGTTTAAATCATGAATCAATAAA
Found at i:10815025 original size:26 final size:26
Alignment explanation
Indices: 10814990--10815066 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 26
10814980 ATTTAGTTTA
*
10814990 AAATTAAATAATTAATTAAATTAATT
1 AAATTTAATAATTAATTAAATTAATT
*
10815016 AAATTTAATAATTAA-TAATATAAATT
1 AAATTTAATAATTAATTAA-ATTAATT
* * * *
10815042 ATATGTAAT-TTTAATTTAATTAATT
1 AAATTTAATAATTAATTAAATTAATT
10815067 TGATTAAATA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
25 13 0.31
26 29 0.69
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (26 bp):
AAATTTAATAATTAATTAAATTAATT
Found at i:10821918 original size:31 final size:34
Alignment explanation
Indices: 10821880--10821945 Score: 111
Period size: 31 Copynumber: 2.0 Consensus size: 34
10821870 ATCTTTTTAA
10821880 TTTTTAAAAAATTAAA-T-TAATTTT-TTATTAT
1 TTTTTAAAAAATTAAAGTGTAATTTTATTATTAT
10821911 TTTTTAAAAAATTAAAGTGTAATTTTATTATTAT
1 TTTTTAAAAAATTAAAGTGTAATTTTATTATTAT
10821945 T
1 T
10821946 AATTTGAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
31 16 0.50
32 1 0.03
33 7 0.22
34 8 0.25
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (34 bp):
TTTTTAAAAAATTAAAGTGTAATTTTATTATTAT
Found at i:10821946 original size:22 final size:21
Alignment explanation
Indices: 10821921--10821965 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
10821911 TTTTTAAAAA
*
10821921 ATTAAAGTGTAATTTTATTATT
1 ATTAAAGTGAAATTTT-TTATT
**
10821943 ATTAATTTGAAATTTTTTATT
1 ATTAAAGTGAAATTTTTTATT
10821964 AT
1 AT
10821966 AATATGCACG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTAAAGTGAAATTTTTTATT
Found at i:10825619 original size:15 final size:16
Alignment explanation
Indices: 10825589--10825627 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
10825579 TAGTAAAAAT
10825589 ATAATTTTACTATTTTA
1 ATAA-TTTACTATTTTA
*
10825606 ATAATTTA-TATTTTT
1 ATAATTTACTATTTTA
10825621 ATAATTT
1 ATAATTT
10825628 TTAGAGGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
ATAATTTACTATTTTA
Found at i:10828394 original size:42 final size:42
Alignment explanation
Indices: 10828342--10828466 Score: 128
Period size: 42 Copynumber: 3.0 Consensus size: 42
10828332 GGCCAAACAA
* *
10828342 AAGCCCATAAGTGCTAAACAGAAACCCGA-AAGGGTTAAACGG
1 AAGCTCATAAGAGCTAAACAGAAACCC-ATAAGGGTTAAACGG
* * *
10828384 AAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACTG
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGG
* * * * *
10828426 AAGCTCA-AATGAGTTGAACGGAAACCCATTAGGGTTGAACG
1 AAGCTCATAA-GAGCTAAACAGAAACCCATAAGGGTTAAACG
10828467 TGTAACACCC
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
41 3 0.04
42 69 0.96
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.16
Consensus pattern (42 bp):
AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGG
Found at i:10828405 original size:21 final size:21
Alignment explanation
Indices: 10828379--10828466 Score: 70
Period size: 21 Copynumber: 4.2 Consensus size: 21
10828369 GAAAGGGTTA
*
10828379 AACGGAAGCTCATAAGAGCTG
1 AACGGAAGCTCATAAGAGTTG
* * * *
10828400 AACGGAAACCCATAAGGGTTA
1 AACGGAAGCTCATAAGAGTTG
*
10828421 AACTGAAGCTCA-AATGAGTTG
1 AACGGAAGCTCATAA-GAGTTG
* * * *
10828442 AACGGAAACCCATTAGGGTTG
1 AACGGAAGCTCATAAGAGTTG
10828463 AACG
1 AACG
10828467 TGTAACACCC
Statistics
Matches: 50, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
20 2 0.04
21 47 0.94
22 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.17
Consensus pattern (21 bp):
AACGGAAGCTCATAAGAGTTG
Found at i:10830055 original size:15 final size:15
Alignment explanation
Indices: 10830035--10830076 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
10830025 TTACTTACTA
10830035 TAAAATAAATAAATT
1 TAAAATAAATAAATT
* *
10830050 TAAAATTAAT-ACTT
1 TAAAATAAATAAATT
10830064 TAATAATAAATAA
1 TAA-AATAAATAA
10830077 CTTGAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 6 0.27
15 15 0.68
16 1 0.05
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (15 bp):
TAAAATAAATAAATT
Found at i:10831777 original size:18 final size:19
Alignment explanation
Indices: 10831744--10831783 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
10831734 AATAAATACA
10831744 TAATATAATTTCT-AAATT
1 TAATATAATTTCTAAAATT
10831762 TAATATAATTAT-TAAAATT
1 TAATATAATT-TCTAAAATT
10831781 TAA
1 TAA
10831784 CCATACGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATATAATTTCTAAAATT
Found at i:10833486 original size:16 final size:17
Alignment explanation
Indices: 10833442--10833487 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
10833432 GCAATGTTAC
*
10833442 TTTTATA-TTCTCACAT
1 TTTTATATTTTTCACAT
*
10833458 TTTCATAATTTTTCA-AT
1 TTTTAT-ATTTTTCACAT
10833475 TTTTATATTTTTC
1 TTTTATATTTTTC
10833488 TTAGAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 12 0.48
17 8 0.32
18 5 0.20
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTATATTTTTCACAT
Found at i:10834929 original size:106 final size:106
Alignment explanation
Indices: 10834811--10835022 Score: 329
Period size: 107 Copynumber: 2.0 Consensus size: 106
10834801 TTATAAGATT
10834811 TAAAATAAAAAATTATACTTGAAATTATTATATGA-GTTTTCGCTGGGTC-GATAAATATCGGTA
1 TAAAATAAAAAATTATACTTGAAATTATTATAT-ACGTTTTCGCTGGGTCTGATAAATATCGGTA
* *
10834874 AATTAATTAATGTTTATAAATAAGGGTAAAATTAAAATAAAA
65 AATTAATTAATATTTATAAATAAGGGTAAAATTAAAAAAAAA
* * *
10834916 TAAAATAAAAAAATTGTACTTGAAATTATTATATACGTTTTTGCTTGGTCTGATAAATATCGGTA
1 TAAAAT-AAAAAATTATACTTGAAATTATTATATACGTTTTCGCTGGGTCTGATAAATATCGGTA
* *
10834981 AATTAATTAATATTTATAATTAAGGGTGAAATTAAAAAAAAA
65 AATTAATTAATATTTATAAATAAGGGTAAAATTAAAAAAAAA
10835023 ATTTAAGAGT
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
105 7 0.07
106 38 0.39
107 52 0.54
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (106 bp):
TAAAATAAAAAATTATACTTGAAATTATTATATACGTTTTCGCTGGGTCTGATAAATATCGGTAA
ATTAATTAATATTTATAAATAAGGGTAAAATTAAAAAAAAA
Found at i:10839499 original size:19 final size:19
Alignment explanation
Indices: 10839462--10839514 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
10839452 TTTAAACTAT
* *
10839462 TTAATTCAAAATTTAAAAA
1 TTAAATCAAATTTTAAAAA
** *
10839481 TTTTATCAAATTTTTAAAA
1 TTAAATCAAATTTTAAAAA
10839500 TTAAATCAAATTTTA
1 TTAAATCAAATTTTA
10839515 CTCACCTAAT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (19 bp):
TTAAATCAAATTTTAAAAA
Found at i:10839707 original size:26 final size:25
Alignment explanation
Indices: 10839650--10839714 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
10839640 TTATTTCAAG
** *
10839650 AAATTTTTGGTAAAAATAATTATAT
1 AAATTTTTTATAAAAATAATTAAAT
*
10839675 AAA-TTTTTATAACAAATTATTAAAT
1 AAATTTTTTATAA-AAATAATTAAAT
10839700 AAATTTTTTATAAAA
1 AAATTTTTTATAAAA
10839715 TTAAAAAGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 7 0.21
25 18 0.53
26 9 0.26
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.45
Consensus pattern (25 bp):
AAATTTTTTATAAAAATAATTAAAT
Found at i:10851448 original size:32 final size:31
Alignment explanation
Indices: 10851393--10851454 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 31
10851383 CTACTTACAA
10851393 AAAATTATCTTTATATTTTTATTTAAAAAACT
1 AAAATTATC-TTATATTTTTATTTAAAAAACT
*
10851425 AAAATTATC-TATATTTATCTATTTCAAAAA
1 AAAATTATCTTATATTT-T-TATTTAAAAAA
10851455 GCATAACTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 7 0.26
31 1 0.04
32 19 0.70
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (31 bp):
AAAATTATCTTATATTTTTATTTAAAAAACT
Found at i:10858891 original size:6 final size:6
Alignment explanation
Indices: 10858882--10858914 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
10858872 CGAAAACCGT
10858882 CTTTGC CTTTGC CTTTGC CTTTGC CTTTGC CTT
1 CTTTGC CTTTGC CTTTGC CTTTGC CTTTGC CTT
10858915 GTCTTCCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.15, T:0.52
Consensus pattern (6 bp):
CTTTGC
Found at i:10867366 original size:47 final size:47
Alignment explanation
Indices: 10867257--10867367 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
10867247 CCGGGATAAG
*
10867257 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
10867304 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
10867351 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
10867368 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:10871247 original size:9 final size:9
Alignment explanation
Indices: 10871235--10871275 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
10871225 ATAATTAAAA
10871235 AATTTAATT
1 AATTTAATT
10871244 AATTTAATT
1 AATTTAATT
10871253 AATATTAATT
1 AAT-TTAATT
*
10871263 CAATTCAATT
1 -AATTTAATT
10871273 AAT
1 AAT
10871276 CGTTTAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 15 0.52
10 11 0.38
11 3 0.10
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (9 bp):
AATTTAATT
Found at i:10871344 original size:2 final size:2
Alignment explanation
Indices: 10871339--10871373 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
10871329 AAACAATGTG
*
10871339 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10871374 GATGCATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10871994 original size:2 final size:2
Alignment explanation
Indices: 10871987--10872028 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
10871977 ATATTTTGAG
10871987 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10872029 GTTAGAATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10876456 original size:23 final size:23
Alignment explanation
Indices: 10876430--10876474 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
10876420 GTTTTTTTAA
10876430 TGTT-TATATTCTAATATTTATAT
1 TGTTATATATT-TAATATTTATAT
*
10876453 TGTTATATATTTAATTTTTATA
1 TGTTATATATTTAATATTTATA
10876475 GTACAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (23 bp):
TGTTATATATTTAATATTTATAT
Found at i:10881580 original size:19 final size:19
Alignment explanation
Indices: 10881556--10881615 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
10881546 TATTATTAAT
*
10881556 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
10881575 ATATTTATCATTAAAATATTA
1 ATATTTATAATTAAAATA--A
* *
10881596 ATATTAAATATTTAAAATAA
1 ATATT-TATAATTAAAATAA
10881616 TATGTGAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
19 16 0.48
20 1 0.03
21 6 0.18
22 10 0.30
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:10881690 original size:20 final size:21
Alignment explanation
Indices: 10881656--10881695 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
10881646 TTAAAATAAA
10881656 ATTAAAATATGAAA-TAATTT
1 ATTAAAATATGAAATTAATTT
10881676 ATTAAAATAAT-AAATTAATT
1 ATTAAAAT-ATGAAATTAATT
10881696 AATAAAGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (21 bp):
ATTAAAATATGAAATTAATTT
Found at i:10896122 original size:22 final size:22
Alignment explanation
Indices: 10896097--10896153 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
10896087 TTTTACCACT
*
10896097 ATTTT-TTCATTATTTTGCTATC
1 ATTTTGTT-ATTATATTGCTATC
* *
10896119 ATTTTGTTATTATATTGTTATT
1 ATTTTGTTATTATATTGCTATC
10896141 ATTTTGTTATTAT
1 ATTTTGTTATTAT
10896154 GGTTCAGATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.67
Consensus pattern (22 bp):
ATTTTGTTATTATATTGCTATC
Found at i:10896136 original size:11 final size:11
Alignment explanation
Indices: 10896122--10896153 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
10896112 TGCTATCATT
10896122 TTGTTATTATA
1 TTGTTATTATA
*
10896133 TTGTTATTATT
1 TTGTTATTATA
10896144 TTGTTATTAT
1 TTGTTATTAT
10896154 GGTTCAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (11 bp):
TTGTTATTATA
Found at i:10896317 original size:23 final size:22
Alignment explanation
Indices: 10896290--10896351 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 22
10896280 TTATTTAGAA
*
10896290 ATATTTATTTTAATATTTTTTGT
1 ATATTTATTTTTATATTTTTT-T
10896313 ATATTTGATTTATTATATTTTTTT
1 ATATTT-ATTT-TTATATTTTTTT
10896337 A-ATTTATTTTTATAT
1 ATATTTATTTTTATAT
10896352 AAAAAAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
21 6 0.17
22 4 0.11
23 10 0.28
24 6 0.17
25 10 0.28
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.69
Consensus pattern (22 bp):
ATATTTATTTTTATATTTTTTT
Found at i:10896740 original size:5 final size:5
Alignment explanation
Indices: 10896730--10896756 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
10896720 AGTTTTTATA
10896730 ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT
10896757 AACAAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:10896805 original size:17 final size:18
Alignment explanation
Indices: 10896776--10896815 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
10896766 TAAGTTGTTT
* *
10896776 TATTTTCATAATTTTTAA
1 TATTTTCATAATTATAAA
10896794 TATTTT-ATAATTATAAA
1 TATTTTCATAATTATAAA
10896811 TATTT
1 TATTT
10896816 AATATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTTCATAATTATAAA
Found at i:10901399 original size:38 final size:39
Alignment explanation
Indices: 10901354--10901508 Score: 222
Period size: 39 Copynumber: 3.9 Consensus size: 39
10901344 AGTTGATTCC
* *
10901354 ACTCTCCCCATGCTACTTTGTTTTATTATTAATTAAAACT
1 ACTC-CCCCATACTATTTTGTTTTATTATTAATTAAAACT
10901394 ACT-CCCCATACTATTTTGTTTTATTATTAATTAAAACT
1 ACTCCCCCATACTATTTTGTTTTATTATTAATTAAAACT
* * * *
10901432 ATTCCCCCATATTATTTTTTTTTATTATTAATTAAAACC
1 ACTCCCCCATACTATTTTGTTTTATTATTAATTAAAACT
*
10901471 ATTCCCCCATACTATTTTGTTTTTATTATTAATTAAAA
1 ACTCCCCCATACTATTTTG-TTTTATTATTAATTAAAA
10901509 TCATACTTTA
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.33
39 49 0.47
40 21 0.20
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.48
Consensus pattern (39 bp):
ACTCCCCCATACTATTTTGTTTTATTATTAATTAAAACT
Found at i:10902141 original size:23 final size:23
Alignment explanation
Indices: 10902104--10902160 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
10902094 AACCCCCTCT
**
10902104 AATACAATCTCTTCTCTTCC-CAA
1 AATACAATCGATT-TCTTCCTCAA
10902127 AATACAATCGA-TTCTTCCTCAA
1 AATACAATCGATTTCTTCCTCAA
*
10902149 AATACCATCGAT
1 AATACAATCGAT
10902161 CCCCCTCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 6 0.21
22 14 0.48
23 9 0.31
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.32
Consensus pattern (23 bp):
AATACAATCGATTTCTTCCTCAA
Found at i:10902144 original size:21 final size:22
Alignment explanation
Indices: 10902118--10902160 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
10902108 CAATCTCTTC
10902118 TCTTCC-CAAAATACAATCGAT
1 TCTTCCTCAAAATACAATCGAT
*
10902139 TCTTCCTCAAAATACCATCGAT
1 TCTTCCTCAAAATACAATCGAT
10902161 CCCCCTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.35, C:0.30, G:0.05, T:0.30
Consensus pattern (22 bp):
TCTTCCTCAAAATACAATCGAT
Found at i:10902673 original size:44 final size:44
Alignment explanation
Indices: 10902610--10903040 Score: 317
Period size: 44 Copynumber: 9.8 Consensus size: 44
10902600 AGTTTTGAGT
* * *
10902610 TCTTCGATCTATTCCCTATAAACACAGGGATGCCAAATCTACTG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTA
* * *
10902654 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--ATGCTGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CT-ACTA
* * * * * * *
10902697 TCTTCGATCTGCTTCACTGTAAGTACAGGAATGTCAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACTA
* * *
10902742 TCTTCGATCTGTTCCTTATAAGCACAAGGATGCCAAATCTACTGT
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACT-A
* * ** *
10902787 TTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCATGT-TGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAATCT-ACTA
** * * * * *
10902830 TCTTCGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACTA
* *
10902875 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTA
* * * *
10902919 TTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--ATGCGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CTACTA
* * * * * * *
10902961 TCTTCGATCTGCTTCACTCTAAGCACAAGAATGTCAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACTA
10903006 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCA
10903041 TGCTGAAACC
Statistics
Matches: 295, Mismatches: 70, Indels: 44
0.72 0.17 0.11
Matches are distributed among these distances:
42 10 0.03
43 40 0.14
44 172 0.58
45 71 0.24
46 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTA
Found at i:10902773 original size:88 final size:88
Alignment explanation
Indices: 10902610--10903103 Score: 384
Period size: 88 Copynumber: 5.6 Consensus size: 88
10902600 AGTTTTGAGT
* * * * * * * *
10902610 TCTTCGATCT-ATTCCCTATAAACACAGGGATGCCAAATCTACTGTCTTC-AACTTGTTCCCTAT
1 TCTTCGATCTGCTTCACTATAAGCACAGGAATGCCAGATCTGCTATCTTCGATC-TGTTCCCTAT
*
10902673 AAACACAGGGATGCCATGCTGAAA
65 AAGCACAGGGATGCCATGCTGAAA
* * * *
10902697 TCTTCGATCTGCTTCACTGTAAGTACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCTTATA
1 TCTTCGATCTGCTTCACTATAAGCACAGGAATGCCAGATCTGCTATCTTCGATCTGTTCCCTATA
* **
10902762 AGCACAAGGATGCCAAAT-CT-ACTGT
66 AGCACAGGGATGCC--ATGCTGA--AA
* * * * ** **
10902787 TTTTC-AACTTG-TTCCCTATAAGCACAGGGATGCCATG-T-TGAAATCTTCGATCTGCTTTACT
1 TCTTCGATC-TGCTTCACTATAAGCACAGGAATGCCA-GATCTGCTATCTTCGATCTG-TTCCCT
* * * **
10902848 GTAAGCACAGGAATGTCA-GATCTGCTA
63 ATAAGCACAGGGATGCCATG--CTGAAA
* * * * * *
10902875 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTC-AACTTGTTCCCTAT
1 TCTTCGATCTGCTTCACTATAAGCACAGGAATGCCAGATCTGCTATCTTCGATC-TGTTCCCTAT
10902938 AAGCACAGGGATGCCATGC-GAAA
65 AAGCACAGGGATGCCATGCTGAAA
* * *
10902961 TCTTCGATCTGCTTCACTCTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
1 TCTTCGATCTGCTTCACTATAAGCACAGGAATGCCAGATCTGCTATCTTCGATCTGTTCCCTATA
10903026 AGCACAGGGATGCCATGCTGAAA
66 AGCACAGGGATGCCATGCTGAAA
* * * * * * * *
10903049 CCTTCGATCTGCTTCACTGTAA-CTCAGAAAGGCGATATCTGCTATCTTTGATCTG
1 TCTTCGATCTGCTTCACTATAAGCACAGGAATGCCAGATCTGCTATCTTCGATCTG
10903104 CCCCTCGTCT
Statistics
Matches: 317, Mismatches: 69, Indels: 42
0.74 0.16 0.10
Matches are distributed among these distances:
86 13 0.04
87 96 0.30
88 144 0.45
89 55 0.17
90 9 0.03
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (88 bp):
TCTTCGATCTGCTTCACTATAAGCACAGGAATGCCAGATCTGCTATCTTCGATCTGTTCCCTATA
AGCACAGGGATGCCATGCTGAAA
Found at i:10902849 original size:133 final size:131
Alignment explanation
Indices: 10902610--10903040 Score: 727
Period size: 133 Copynumber: 3.3 Consensus size: 131
10902600 AGTTTTGAGT
* * *
10902610 TCTTCGATCTATTCCCTATAAACACAGGGATGCCAAATCTACTGTCTTCAACTTGTTCCCTATAA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTGTTTTCAACTTGTTCCCTATAA
* *
10902675 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGTACAGGAATGTCAGATCTGC
66 GCACAGGGATGCCATG-TGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
10902740 TA
130 TA
* *
10902742 TCTTCGATCTGTTCCTTATAAGCACAAGGATGCCAAATCTACTGTTTTTCAACTTGTTCCCTATA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTG-TTTTCAACTTGTTCCCTATA
*
10902807 AGCACAGGGATGCCATGTTGAAATCTTCGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTG
65 AGCACAGGGATGCCATG-TGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTG
10902872 CTA
129 CTA
*
10902875 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTGTTTTCAACTTGTTCCCTATAA
* * *
10902940 GCACAGGGATGCCATGCGAAATCTTCGATCTGCTTCACTCTAAGCACAAGAATGTCAGATCTGCT
66 GCACAGGGATGCCATGTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCT
10903005 A
131 A
10903006 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCA
10903041 TGCTGAAACC
Statistics
Matches: 282, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
131 81 0.29
132 77 0.27
133 124 0.44
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (131 bp):
TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTGTTTTCAACTTGTTCCCTATAA
GCACAGGGATGCCATGTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCT
A
Found at i:10903089 original size:87 final size:87
Alignment explanation
Indices: 10902928--10903103 Score: 257
Period size: 87 Copynumber: 2.0 Consensus size: 87
10902918 GTTTTCAACT
* *
10902928 TGTTCCCTATAAGCACAGGGATGCCATGCGAAATCTTCGATCTGCTTCACTCTAAGCACAAGAAT
1 TGTTCCCTATAAGCACAGGGATGCCATGCGAAACCTTCGATCTGCTTCACTCTAAGCACAAGAAA
*
10902993 GTCAGATCTGCTATCTTCGATC
66 GGCAGATCTGCTATCTTCGATC
* *
10903015 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAACCTTCGATCTGCTTCACTGTAA-CTC-AGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGC-GAAACCTTCGATCTGCTTCACTCTAAGCACAAGAA
* *
10903078 AGGCGATATCTGCTATCTTTGATC
65 AGGC-AGATCTGCTATCTTCGATC
10903102 TG
1 TG
10903104 CCCCTCGTCT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
86 6 0.08
87 50 0.62
88 24 0.30
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (87 bp):
TGTTCCCTATAAGCACAGGGATGCCATGCGAAACCTTCGATCTGCTTCACTCTAAGCACAAGAAA
GGCAGATCTGCTATCTTCGATC
Found at i:10903508 original size:205 final size:203
Alignment explanation
Indices: 10903139--10903923 Score: 1180
Period size: 205 Copynumber: 3.8 Consensus size: 203
10903129 AATCTATTTT
* * * * * *
10903139 TTCGATTTGTTCACTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCACG
1 TTCGATTCGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAATCACG
* * * *
10903204 TGAAAGCCAAATCAACTATGA--TTCGATTTGCTCATTGTAAGCATAAGGATGCAAAACCATCTT
66 TGAAAGCCAAATCAGCTAT-ATCTTCGATTTGCTCATTGTAAACACAAGGATGCCAAACCATCTT
* * * *
10903267 GGATCCGCTTCAGCATAAACATCCGAAGGTGAGATCTGCTATGTGCCTGCTCTCCATCAAAGTGA
130 GGATCTGCTTCAG--TAAACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
10903332 AGATGCCAAAC
193 AGATGCCAAAC
* *
10903343 TTCGATTCGTTCTCTGACGATACAGAGATGACAAATCATCTTAGATTTACTTTC-TCGTAATCAC
1 TTCGATTCGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGC-TTCATCGTAATCAC
* * * *
10903407 GTGAAATCCAAATTAGCTATATCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
65 GTGAAAGCCAAATCAGCTATATCTTCGATTTGCTCATTGTAAACACAAGGATGCCAAACCATCTT
*
10903472 GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATATGTCTGCTCTCCATCAAAGTGA
130 GGATCTGCTTCAGT-AAA-CATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
10903537 AGATGCCAAAC
193 AGATGCCAAAC
*
10903548 TTCGATTCGTTCTCTGACAATACAGAAATGACAAATCATCTTAGATTTGCTTCATCGTAATCACG
1 TTCGATTCGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAATCACG
* *
10903613 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAACACAAGGATGCCAAACCATCTTA
66 TGAAAGCCAAATCAGCTATATCTTCGATTTGCTCATTGTAAACACAAGGATGCCAAACCATCTTG
*
10903678 GATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAAGTGAA
131 GATCTGCTTCAGT-AAA-CATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
10903743 GATGCCAAAC
194 GATGCCAAAC
* *
10903753 TTCGATTCGTTCTCTGACAATACAGAGACGACAAATTATCTTAGATTTGCTTCATCGTAATCACG
1 TTCGATTCGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAATCACG
* * *
10903818 TAAAAGCCAAATCAGCTATGTCTTCGATTTGCTCTTTGTAAACACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATATCTTCGATTTGCTCATTGTAAACACAAGGATGCCAAACCATCTTG
* *
10903883 GATCTGCTTCAGTATAACATCTGAAGGCCAGATCTGTTATG
131 GATCTGCTTCAGTA-AACATCTGAAGGCGAGATCTGCTATG
10903924 CTACGGCCTA
Statistics
Matches: 534, Mismatches: 40, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
203 2 0.00
204 99 0.19
205 433 0.81
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (203 bp):
TTCGATTCGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAATCACG
TGAAAGCCAAATCAGCTATATCTTCGATTTGCTCATTGTAAACACAAGGATGCCAAACCATCTTG
GATCTGCTTCAGTAAACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGA
TGCCAAAC
Found at i:10907177 original size:46 final size:44
Alignment explanation
Indices: 10907125--10907210 Score: 127
Period size: 46 Copynumber: 1.9 Consensus size: 44
10907115 CAGAACGAAA
*
10907125 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGACAGGAT
* *
10907171 TGAGCCATGTAATTCCATATTATATATGGCATTGGAGACA
1 TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACA
10907211 AGAATAATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 17 0.46
46 20 0.54
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACAGGAT
Found at i:10907224 original size:44 final size:45
Alignment explanation
Indices: 10907127--10907251 Score: 126
Period size: 44 Copynumber: 2.8 Consensus size: 45
10907117 GAACGAAATG
* * * *
10907127 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAAGAATA
* *
10907173 AGCCATGTAATTCCATATT-ATATATGGCATTGGAGACAAGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
** * * *
10907217 ATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
10907252 CAGGATATTG
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
44 34 0.53
45 1 0.02
46 29 0.45
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
Found at i:10914927 original size:13 final size:15
Alignment explanation
Indices: 10914897--10914927 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10914887 TTCCAGATTT
10914897 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
10914912 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
10914927 T
1 T
10914928 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:10915013 original size:15 final size:14
Alignment explanation
Indices: 10914971--10915020 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
10914961 ATAACTTTGA
*
10914971 ATGCAAATGATGTG
1 ATGCAAATGATGAG
10914985 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
10915000 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
10915014 ATGCAAA
1 ATGCAAA
10915021 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:10919446 original size:38 final size:39
Alignment explanation
Indices: 10919393--10919543 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
10919383 GATTCCACTC
* * *
10919393 CCCCATGCTACTTTG-TTTTATTATTAATTAAAACTACT
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATT
10919431 CCCCATACTATTTTG-TTTTATTATTAATTAAAACTATT
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATT
*
10919469 CCCCCATACTATTTTGTTTTTATTATTAATTAAAACCATT
1 -CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATT
10919509 CCCCATACTATTTTGTTTTTATTATTAATTAAAAC
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAAC
10919544 CATACTTTAT
Statistics
Matches: 107, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
38 35 0.33
39 50 0.47
40 22 0.21
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.48
Consensus pattern (39 bp):
CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATT
Found at i:10920200 original size:22 final size:23
Alignment explanation
Indices: 10920152--10920207 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
10920142 AAACCCCTCT
**
10920152 AATACAATCTCTTCTCTCCCCAA
1 AATACAATCGATTCTCTCCCCAA
*
10920175 AATACAATCGATTCT-TCCTCAA
1 AATACAATCGATTCTCTCCCCAA
*
10920197 AATACCATCGA
1 AATACAATCGA
10920208 ACCCCCCCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 16 0.55
23 13 0.45
ACGTcount: A:0.36, C:0.32, G:0.04, T:0.29
Consensus pattern (23 bp):
AATACAATCGATTCTCTCCCCAA
Found at i:10922356 original size:17 final size:17
Alignment explanation
Indices: 10922334--10922366 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10922324 ACTTTCTCTA
10922334 TTTTATTATTATTTATG
1 TTTTATTATTATTTATG
*
10922351 TTTTATTTTTATTTAT
1 TTTTATTATTATTTAT
10922367 TAATTATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTATTATTATTTATG
Found at i:10927454 original size:27 final size:26
Alignment explanation
Indices: 10927396--10927471 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
10927386 CAATTAAGTT
*
10927396 TATTTAAAATAAAAATATTAA-ATTTAA
1 TATTTAAAATAAAAA-A-TAATATTAAA
10927423 -A-TTAAAAGTAAAAAATAATATTAAA
1 TATTTAAAA-TAAAAAATAATATTAAA
*
10927448 TATTTAAATATTAAAAATAATATT
1 TATTTAAA-ATAAAAAATAATATT
10927472 TTTGACTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
24 3 0.07
25 12 0.29
26 8 0.19
27 18 0.43
28 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (26 bp):
TATTTAAAATAAAAAATAATATTAAA
Found at i:10927604 original size:34 final size:33
Alignment explanation
Indices: 10927554--10927640 Score: 88
Period size: 34 Copynumber: 2.6 Consensus size: 33
10927544 TTAATATTTT
* *
10927554 AATATTATATATTATATTAA-TTAAAAATGTAAAA
1 AATAATATATAATATATTAATTTAAAAAT-T-AAA
* * *
10927588 AATCATATATAATATATAAAATTTAAAAATTCAA
1 AATAATATATAATATAT-TAATTTAAAAATTAAA
10927622 AATAATATATAA-ATATTAA
1 AATAATATATAATATATTAA
10927641 AAATATTATA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
32 2 0.05
33 4 0.09
34 27 0.61
35 3 0.07
36 8 0.18
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (33 bp):
AATAATATATAATATATTAATTTAAAAATTAAA
Found at i:10927617 original size:27 final size:27
Alignment explanation
Indices: 10927585--10927651 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
10927575 TAAAAATGTA
10927585 AAAAATCATATATAATATATAAA-ATTT
1 AAAAATCATATATAATATATAAATA-TT
*
10927612 AAAAATTCA-AAATAATATATAAATATT
1 AAAAA-TCATATATAATATATAAATATT
10927639 AAAAAT-AT-TATAA
1 AAAAATCATATATAA
10927652 AATTTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
25 5 0.14
26 1 0.03
27 25 0.71
28 4 0.11
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (27 bp):
AAAAATCATATATAATATATAAATATT
Found at i:10927626 original size:20 final size:20
Alignment explanation
Indices: 10927603--10927645 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
10927593 TATATAATAT
* *
10927603 ATAAAATTTAAAAATTCAAA
1 ATAAAATATAAAAATTAAAA
* *
10927623 ATAATATATAAATATTAAAA
1 ATAAAATATAAAAATTAAAA
10927643 ATA
1 ATA
10927646 TTATAAAATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAAAATATAAAAATTAAAA
Found at i:10927650 original size:20 final size:19
Alignment explanation
Indices: 10927620--10927696 Score: 63
Period size: 20 Copynumber: 4.1 Consensus size: 19
10927610 TTAAAAATTC
10927620 AAAATAATATATAAATATTA
1 AAAATAATATATAAAT-TTA
*
10927640 AAAATATTATA-AAATTTTTA
1 AAAATAATATATAAA--TTTA
* *
10927660 AAAA-AGTATTTAAATTTA
1 AAAATAATATATAAATTTA
*
10927678 AAAA-AA-ATAAAAATTTA
1 AAAATAATATATAAATTTA
10927695 AA
1 AA
10927697 TACCTTTTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
17 11 0.23
18 9 0.19
19 7 0.15
20 20 0.42
21 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (19 bp):
AAAATAATATATAAATTTA
Found at i:10927837 original size:14 final size:14
Alignment explanation
Indices: 10927818--10927851 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
10927808 TTTTCTGAAT
10927818 TTTTTATATTTT-TA
1 TTTTTAT-TTTTATA
10927832 TTTTTATTTTTATA
1 TTTTTATTTTTATA
10927846 TTTTTA
1 TTTTTA
10927852 ACATGTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTATTTTTATA
Found at i:10931897 original size:15 final size:15
Alignment explanation
Indices: 10931877--10931916 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
10931867 TCTATTTTAT
10931877 TATATAAATATTAAA
1 TATATAAATATTAAA
*
10931892 TATAT-AATATTATA
1 TATATAAATATTAAA
10931906 -ATATAAATATT
1 TATATAAATATT
10931917 TAAAAATCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 14 0.61
15 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATAAATATTAAA
Found at i:10932021 original size:2 final size:2
Alignment explanation
Indices: 10932009--10932041 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
10931999 ATTTAAATAA
*
10932009 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10932042 CGATAACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:10933393 original size:2 final size:2
Alignment explanation
Indices: 10933386--10933425 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
10933376 ATACTTCTTT
* *
10933386 TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10933426 AGCTTTAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:10933403 original size:12 final size:12
Alignment explanation
Indices: 10933386--10933425 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
10933376 ATACTTCTTT
*
10933386 TATATATATATA
1 TATATATATAAA
10933398 TATATATATAAA
1 TATATATATAAA
10933410 TATATATATAAA
1 TATATATATAAA
10933422 TATA
1 TATA
10933426 AGCTTTAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TATATATATAAA
Found at i:10940884 original size:2 final size:2
Alignment explanation
Indices: 10940873--10940904 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
10940863 TTGTATTTAC
10940873 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10940905 GAATAAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10941175 original size:19 final size:18
Alignment explanation
Indices: 10941143--10941190 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
10941133 AACTATTTTT
* *
10941143 TTAAAATTTAATTAAATTA
1 TTAAAATAT-ATTAAAATA
*
10941162 TATAAATTATATTAAAATA
1 T-TAAAATATATTAAAATA
10941181 TTAAAATATA
1 TTAAAATATA
10941191 ATCTATTTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 8 0.33
19 10 0.42
20 6 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TTAAAATATATTAAAATA
Found at i:10943879 original size:2 final size:2
Alignment explanation
Indices: 10943872--10943915 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
10943862 TGCTTTTGGG
*
10943872 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10943913 TA T
1 TA T
10943916 GCTCAAGCCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:10949790 original size:66 final size:66
Alignment explanation
Indices: 10949684--10949810 Score: 220
Period size: 66 Copynumber: 1.9 Consensus size: 66
10949674 ACCAATACCC
* *
10949684 AAATATGAAAATCAAGTGTAAAGCCAAAACTATCCCATAATGGGTTATTGAAAATTATGAACATC
1 AAATATGAAAATCAAGTGTAAAACCAAAACTATCCAATAATGGGTTATTGAAAATTATGAACATC
10949749 T
66 T
10949750 AAATATGAAAATC-AGCTGTAAAACCAAAACTATCCAATAATGGGTTATTGAAAATTATGAA
1 AAATATGAAAATCAAG-TGTAAAACCAAAACTATCCAATAATGGGTTATTGAAAATTATGAA
10949811 TATCCATGTA
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
65 2 0.03
66 56 0.97
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (66 bp):
AAATATGAAAATCAAGTGTAAAACCAAAACTATCCAATAATGGGTTATTGAAAATTATGAACATC
T
Done.