Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 290 of 335
Found at i:87210939 original size:17 final size:18
Alignment explanation
Indices: 87210919--87210954 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
87210909 TAAGTTTTAA
87210919 AATATTT-TTTTATTTTT
1 AATATTTATTTTATTTTT
87210936 AATATTTATTTTATTTTT
1 AATATTTATTTTATTTTT
87210954 A
1 A
87210955 TTTCAAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
AATATTTATTTTATTTTT
Found at i:87213400 original size:15 final size:16
Alignment explanation
Indices: 87213380--87213409 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87213370 AAAATAATAA
87213380 ATAAT-AAATATATTT
1 ATAATAAAATATATTT
87213395 ATAATAAAATATATT
1 ATAATAAAATATATT
87213410 AATTTTGGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATAATAAAATATATTT
Found at i:87220745 original size:21 final size:21
Alignment explanation
Indices: 87220719--87220759 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
87220709 ATCTGCTCAA
* *
87220719 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
87220740 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
87220760 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:87224487 original size:22 final size:22
Alignment explanation
Indices: 87224462--87224504 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
87224452 TATTTTAGTA
87224462 ATATCA-AAATTCTTATAAATAC
1 ATATCATAAA-TCTTATAAATAC
*
87224484 ATATGATAAATCTTATAAATA
1 ATATCATAAATCTTATAAATA
87224505 ATAAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.37
Consensus pattern (22 bp):
ATATCATAAATCTTATAAATAC
Found at i:87225809 original size:19 final size:19
Alignment explanation
Indices: 87225767--87225809 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
87225757 AGTTTTTTGT
* *
87225767 ATTTTTCTAATTTTAGATT
1 ATTTTTCTAATTTTAAATA
* *
87225786 TTTTTTCTATTTTTAAATA
1 ATTTTTCTAATTTTAAATA
87225805 ATTTT
1 ATTTT
87225810 GATATTTTTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (19 bp):
ATTTTTCTAATTTTAAATA
Found at i:87226281 original size:24 final size:21
Alignment explanation
Indices: 87226254--87226304 Score: 57
Period size: 24 Copynumber: 2.3 Consensus size: 21
87226244 TTATTAAAGT
*
87226254 AATTTAGATTAATAGGAATTATCA
1 AATTTACATTAA-AGG-ATTAT-A
*
87226278 AATTTACATTTAAGGATTATA
1 AATTTACATTAAAGGATTATA
87226299 AATTTA
1 AATTTA
87226305 TTTAATTCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.28
22 5 0.20
23 3 0.12
24 10 0.40
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (21 bp):
AATTTACATTAAAGGATTATA
Found at i:87227063 original size:2 final size:2
Alignment explanation
Indices: 87227056--87227090 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
87227046 TTGGAGTACA
87227056 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87227091 CTAAAAGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:87229416 original size:84 final size:84
Alignment explanation
Indices: 87229275--87229468 Score: 325
Period size: 84 Copynumber: 2.3 Consensus size: 84
87229265 ATTAAATGGG
* * *
87229275 CTCACATGCTCATGTGGCCTGCCCGTTGGCCCATACGGCCCAATTTGGCCTTGGCCGTGTGGATC
1 CTCACACGCTCGTGTGGACTGCCCGTTGGCCCATACGGCCCAATTTGGCCTTGGCCGTGTGGATC
87229340 ACAAGGCCTGGCCCAGAAT
66 ACAAGGCCTGGCCCAGAAT
* *
87229359 CTCACACGCTCGTGTGGACTGCCTGTTGGCCCATATGGCCCAATTTGGCCTTGGCCGTGTGGATC
1 CTCACACGCTCGTGTGGACTGCCCGTTGGCCCATACGGCCCAATTTGGCCTTGGCCGTGTGGATC
87229424 ACAAGGCCTGGCCCAGAAT
66 ACAAGGCCTGGCCCAGAAT
* *
87229443 CCCACACGTTCGTGTGGACTGCCCGT
1 CTCACACGCTCGTGTGGACTGCCCGT
87229469 GTGGACCTAC
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 102 1.00
ACGTcount: A:0.16, C:0.33, G:0.28, T:0.23
Consensus pattern (84 bp):
CTCACACGCTCGTGTGGACTGCCCGTTGGCCCATACGGCCCAATTTGGCCTTGGCCGTGTGGATC
ACAAGGCCTGGCCCAGAAT
Found at i:87229492 original size:84 final size:84
Alignment explanation
Indices: 87229277--87229493 Score: 269
Period size: 84 Copynumber: 2.6 Consensus size: 84
87229267 TAAATGGGCT
* * * * *
87229277 CACATGCTCATGTGGCCTGCCCGTTGGCCCAT-ACGGCCCAATTTGGCCTTGGCCGTGTGGATCA
1 CACACGCTCGTGTGGACTGCCCGTTGGACCATAAC-GCCCAATATGGCCTTGGCCGTGTGGATCA
*
87229341 CAAGGCCTGGCCCAGAATCT
65 CAAGGCCTGGCCCAGAATCC
* * ** *
87229361 CACACGCTCGTGTGGACTGCCTGTTGGCCCATATGGCCCAATTTGGCCTTGGCCGTGTGGATCAC
1 CACACGCTCGTGTGGACTGCCCGTTGGACCATAACGCCCAATATGGCCTTGGCCGTGTGGATCAC
87229426 AAGGCCTGGCCCAGAATCC
66 AAGGCCTGGCCCAGAATCC
* *
87229445 CACACGTTCGTGTGGACTGCCCGTGTGGACC-TACACGCCC-GTATGGCCT
1 CACACGCTCGTGTGGACTGCCCGT-TGGACCATA-ACGCCCAATATGGCCT
87229494 ACACGTCCCA
Statistics
Matches: 116, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
84 107 0.92
85 9 0.08
ACGTcount: A:0.16, C:0.33, G:0.28, T:0.23
Consensus pattern (84 bp):
CACACGCTCGTGTGGACTGCCCGTTGGACCATAACGCCCAATATGGCCTTGGCCGTGTGGATCAC
AAGGCCTGGCCCAGAATCC
Found at i:87229496 original size:17 final size:18
Alignment explanation
Indices: 87229463--87229498 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
87229453 CGTGTGGACT
*
87229463 GCCCGTGTGGACCTACAC
1 GCCCGTATGGACCTACAC
87229481 GCCCGTATGG-CCTACAC
1 GCCCGTATGGACCTACAC
87229498 G
1 G
87229499 TCCCAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.17, C:0.39, G:0.28, T:0.17
Consensus pattern (18 bp):
GCCCGTATGGACCTACAC
Found at i:87233413 original size:22 final size:24
Alignment explanation
Indices: 87233374--87233423 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 24
87233364 ATACATACAT
* *
87233374 CATATAGATATTAAAAAAATAT-A
1 CATATAGATAATAAAAAAACATAA
*
87233397 CATA-AGATAATACAAAAACATAA
1 CATATAGATAATAAAAAAACATAA
87233420 CATA
1 CATA
87233424 CATAATATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.62, C:0.10, G:0.04, T:0.24
Consensus pattern (24 bp):
CATATAGATAATAAAAAAACATAA
Found at i:87233413 original size:23 final size:23
Alignment explanation
Indices: 87233360--87233423 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 23
87233350 AATACGGTAT
* *
87233360 TAAAATACATACATCATATAGATAT
1 TAAAAAACATA-A-CATATAGATAA
87233385 TAAAAAA-ATATACATA-AGATAA
1 TAAAAAACATA-ACATATAGATAA
87233407 TACAAAAACATAACATA
1 TA-AAAAACATAACATA
87233424 CATAATATGG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 7 0.21
23 14 0.41
24 7 0.21
25 6 0.18
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.25
Consensus pattern (23 bp):
TAAAAAACATAACATATAGATAA
Found at i:87234884 original size:25 final size:27
Alignment explanation
Indices: 87234847--87234899 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
87234837 TCAAACATGC
87234847 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
87234873 ATTTTGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
87234899 A
1 A
87234900 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:87236422 original size:26 final size:26
Alignment explanation
Indices: 87236387--87236494 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
87236377 TGAAATGCCC
*
87236387 ATCATAGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
87236413 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
* *
87236439 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
87236465 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
87236491 ATCA
1 ATCA
87236495 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 4 0.05
26 68 0.91
27 3 0.04
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:87238661 original size:15 final size:15
Alignment explanation
Indices: 87238637--87238669 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
87238627 TTGATTTTTG
*
87238637 AAAAATATAAATTGA
1 AAAAACATAAATTGA
87238652 AAAAACATAAATTGA
1 AAAAACATAAATTGA
87238667 AAA
1 AAA
87238670 TACCTCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.06, T:0.21
Consensus pattern (15 bp):
AAAAACATAAATTGA
Found at i:87238805 original size:98 final size:99
Alignment explanation
Indices: 87238631--87238821 Score: 251
Period size: 98 Copynumber: 1.9 Consensus size: 99
87238621 TATGAGTTGA
* * * * * * *
87238631 TTTTTGAAAAATATAAATTGAAAAAACATAAATTGAAAATACCTCAACATGTGAGCCGAGGCTCA
1 TTTTTGAAAAACAGAAATTGAAAAAACACAAACTGAAAATACCTCAACACGTAAGCCAAGGCTCA
*
87238696 ACTCACCTCTCGCAATATGAGTTGGTTTATTTTT
66 ACTCACCTCTCGCAATATAAGTTGGTTTATTTTT
* * *
87238730 TTTTTGAAAAGCAGAAATTG-AAAAACACAAACT-AAAAGTAGCTCAGCACGTAAGCCAAGGCTC
1 TTTTTGAAAAACAGAAATTGAAAAAACACAAACTGAAAA-TACCTCAACACGTAAGCCAAGGCTC
*
87238793 AACTCACTTCTCGCAATATAAGTTGGTTT
65 AACTCACCTCTCGCAATATAAGTTGGTTT
87238822 TTGAAAACAT
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
97 4 0.05
98 58 0.73
99 17 0.22
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (99 bp):
TTTTTGAAAAACAGAAATTGAAAAAACACAAACTGAAAATACCTCAACACGTAAGCCAAGGCTCA
ACTCACCTCTCGCAATATAAGTTGGTTTATTTTT
Found at i:87238948 original size:87 final size:88
Alignment explanation
Indices: 87238730--87239454 Score: 695
Period size: 87 Copynumber: 8.1 Consensus size: 88
87238720 GTTTATTTTT
* * * * * * * *
87238730 TTTTTGAAAAGCAGAAATTGAAAAACACAAACT-AAAAGTAGCTCAGCACGTAAGCC-AAGGCTC
1 TTTTTGGAAA-CATAAATTGAAAAACAGAAATTGAAAA-TACCTCAGCATGTGA-CCTGAGGCTC
* * *
87238793 AACTCACTTCTCGCAATATAAGTTGG
63 AACTCACCTCTCGCAATATGAGTTGA
* * ** * *
87238819 TTTTTGAAAACATAATTTGAAAAACAGATTTTGAAAATACCTC-GACATGTGATCTAAGGCTCAA
1 TTTTTGGAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAG-CATGTGACCTGAGGCTCAA
87238883 CTCACCTCTCGCAATATGAGTTGA
65 CTCACCTCTCGCAATATGAGTTGA
*
87238907 -TTTTGGAAATATAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAA
1 TTTTTGGAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGA-CCTGAGGCTCAA
*
87238970 CTCACCTCTTGCAATATGAGTTGA
65 CTCACCTCTCGCAATATGAGTTGA
* * *
87238994 TTTTTTTTGAAACATAAATTGAAAAAC-GAAAGTTGAAAATACCTCAGCGTGTGACCTGAGGCCC
1 --TTTTTGGAAACATAAATTGAAAAACAGAAA-TTGAAAATACCTCAGCATGTGACCTGAGGCTC
*
87239058 AACTCACCTCACGCAATATGAGTTGA
63 AACTCACCTCTCGCAATATGAGTTGA
* * * *
87239084 TTTTTTTGAAAGACAGAAATTGAAAAATAGAAATTGAAAATACCTCAGCA--TGACCTAAGGCTC
1 --TTTTTGGAA-ACATAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTC
87239147 AACTCACCTCTCGCAATATGAGTTGA
63 AACTCACCTCTCGCAATATGAGTTGA
* * *
87239173 TTTTTTTGAAACATAAATTGAAAAACTGAAATTGAAAATACCTCAGC--GTGTCCTGAGGCTCAA
1 -TTTTTGGAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAA
87239236 CTCACCTCTCGCAATATGAGTTGA
65 CTCACCTCTCGCAATATGAGTTGA
* * * ** **
87239260 TTTTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGAAAAGAAGAAATTGAAAATACCTCA-GTG
1 --TTTTTGGAAA-CATAAATTGAAAAACAGAAATT-----G-A-AAA-T--ACCT-CAGCATGTG
* * *
87239324 TACCCTTATGCTCAATTCACCTCTCGCAATATGAGTTGA
52 -A-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
87239363 TTTTTTTGAAACATAAATTGAAAAA-TGAAAATTGAAAATACCTCAGC--GTGTCCTGAGGCTCA
1 -TTTTTGGAAACATAAATTGAAAAACAG-AAATTGAAAATACCTCAGCATGTGACCTGAGGCTCA
87239425 ACTCACCTCTCGCAATATGAGTTGA
64 ACTCACCTCTCGCAATATGAGTTGA
87239450 TTTTT
1 TTTTT
87239455 TTTAAAAAGC
Statistics
Matches: 538, Mismatches: 68, Indels: 63
0.80 0.10 0.09
Matches are distributed among these distances:
86 5 0.01
87 181 0.34
88 75 0.14
89 78 0.14
90 84 0.16
91 32 0.06
92 4 0.01
93 1 0.00
94 4 0.01
95 2 0.00
96 4 0.01
97 1 0.00
99 2 0.00
100 3 0.01
101 20 0.04
102 9 0.02
103 33 0.06
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (88 bp):
TTTTTGGAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGA
Found at i:87239108 original size:14 final size:14
Alignment explanation
Indices: 87239089--87239123 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
87239079 GTTGATTTTT
*
87239089 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
87239103 TTGAAAAATAGAAA
1 TTGAAAAACAGAAA
87239117 TTGAAAA
1 TTGAAAA
87239124 TACCTCAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:87239243 original size:266 final size:267
Alignment explanation
Indices: 87238600--87239530 Score: 950
Period size: 266 Copynumber: 3.5 Consensus size: 267
87238590 GTGAACCCAC
***
87238600 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACATAAATT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAATATAAATTG-AAAAAC-TAAATT
*
87238665 GAAAATACCTCAACATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTATTTTT
64 GAAAATACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-G---A---TT
** * ** *
87238730 TTTTTGAAAAGCAGAAATTGAAAAAC-ACAAACT-AAAAGTAGCTCAGCACGTAAGCC-AAGGCT
121 TTTTTGAAAAGCAGAAATTGAAAAACGACAAGTTGAAAA-TACCTCAGCGTGT-ACCCTAAGGCT
* * * * * **
87238792 CAACTCACTTCTCGCAATATAAGTTG--GTTTTTGAAAACATAATTTGAAAAACAGATTTTGAAA
184 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATAAATTGAAAAATAGAAATTGAAA
*
87238855 ATACCTC-GACATGTGATCTAA
249 ATACCTCAG-CA--TGACCTAA
* *
87238876 GGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGGAAATATAAATTGAAAAACAGAAATTG
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAATATAAATTGAAAAAC-TAAATTG
*
87238939 AAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTG-
65 AAAATACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA
* * *
87239003 AAA-CATAAATTGAAAAACGA-AAGTTGAAAATACCTCAGCGTGTGA-CCTGAGGCCCAACTCAC
128 AAAGCAGAAATTGAAAAACGACAAGTTGAAAATACCTCAGCGTGT-ACCCTAAGGCTCAACTCAC
* *
87239065 CTCACGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAATAGAAATTGAAAATACCTC
192 CTCTCGCAATATGAGTTGATTTTTTTGAAA-ACATAAATTGAAAAATAGAAATTGAAAATACCTC
87239130 AGCATGACCTAA
256 AGCATGACCTAA
*
87239142 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAACTGAAATTG
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAATATAAATTGAAAAACT-AAATTG
*
87239207 AAAATACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
65 AAAATACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * *
87239270 AAGCAGAAATTGAAAAGCAGAAATTGAAAAGAAGAAATTGAAAATACCTCA--GTGTACCCTTAT
129 AAGCAGAAATTG---A--A-AAA-CG---ACAAG---TTGAAAATACCTCAGCGTGTACCCTAAG
*
87239333 GCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAACATAAATTGAAAAAT-GAAAATT
181 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATAAATTGAAAAATAG-AAATT
* * *
87239396 GAAAATACCTCAGCGTGTCCTGA
245 GAAAATACCTCAGCATGACCTAA
**
87239419 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT----TA-AAA---AGCAA--AAATTGA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAATATAAATTGAAAAACTAAATTGA
* * *
87239474 AAATACCTCAG-TGT-ACCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTT
66 AAATACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
87239531 GGCAAACATA
Statistics
Matches: 578, Mismatches: 46, Indels: 72
0.83 0.07 0.10
Matches are distributed among these distances:
264 2 0.00
265 65 0.11
266 144 0.25
267 26 0.04
268 72 0.12
269 5 0.01
270 1 0.00
272 5 0.01
273 68 0.12
274 16 0.03
276 32 0.06
277 79 0.14
278 6 0.01
279 43 0.07
281 14 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (267 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAATATAAATTGAAAAACTAAATTGA
AAATACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
GCAGAAATTGAAAAACGACAAGTTGAAAATACCTCAGCGTGTACCCTAAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTTTGAAAACATAAATTGAAAAATAGAAATTGAAAATACCTCAGCAT
GACCTAA
Found at i:87239284 original size:14 final size:14
Alignment explanation
Indices: 87239265--87239313 Score: 89
Period size: 14 Copynumber: 3.5 Consensus size: 14
87239255 GTTGATTTTT
87239265 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
87239279 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
*
87239293 TTGAAAAGAAGAAA
1 TTGAAAAGCAGAAA
87239307 TTGAAAA
1 TTGAAAA
87239314 TACCTCAGTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.59, C:0.04, G:0.20, T:0.16
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:87239309 original size:103 final size:100
Alignment explanation
Indices: 87239178--87239476 Score: 347
Period size: 103 Copynumber: 3.1 Consensus size: 100
87239168 GTTGATTTTT
* *
87239178 TTGAAACATAAATTGAAAA-ACTGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
1 TTGAAA-AAAAATTGAAAAGA-AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
87239242 TCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAA
64 TCTCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAA
* ** * * *
87239279 TTGAAAAGCAGAAATTGAAAAGAAGAAATTGAAAATACCTCAGTGTACCCTTATGCTCAATTCAC
1 TTGAAAA--A-AAATTGAAAAGAAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
*
87239344 CTCTCGCAATATGAGTTGATTTTTTTG-AAA-CATAAA
63 CTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAA
87239380 TTG---AAAAA-T-----G-A-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
1 TTGAAAAAAAATTGAAAAGAAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
87239434 TCGCAATATGAGTTGATTTTTTTTAAAAAGCAAAAA
66 TCGCAATATGAGTTGA-TTTTTTTGAAAAGCAAAAA
87239470 TTGAAAA
1 TTGAAAA
87239477 TACCTCAGTG
Statistics
Matches: 171, Mismatches: 17, Indels: 28
0.79 0.08 0.13
Matches are distributed among these distances:
87 53 0.31
88 8 0.05
89 4 0.02
90 8 0.05
93 1 0.01
94 1 0.01
95 3 0.02
96 1 0.01
98 1 0.01
100 1 0.01
101 14 0.08
102 3 0.02
103 72 0.42
104 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.29
Consensus pattern (100 bp):
TTGAAAAAAAATTGAAAAGAAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAA
Found at i:87239420 original size:190 final size:191
Alignment explanation
Indices: 87239092--87239476 Score: 645
Period size: 190 Copynumber: 2.0 Consensus size: 191
87239082 GATTTTTTTG
87239092 AAAGACAGAAATTGAAAAATAGAAATTGAAAATACCTCAGCATGACCTAAGGCTCAACTCACCTC
1 AAAGACAGAAATTGAAAAATAGAAATTGAAAATACCTCAG-ATGACCTAAGGCTCAACTCACCTC
87239157 TCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAACTGAAATTGAAAATACCTCAGCGT
65 TCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAACTGAAATTGAAAATACCTCAGCGT
* *
87239222 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAGCAGAAATTGA
130 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAGCAAAAATTGA
* * *
87239283 AAAG-CAGAAATTGAAAAGA-AGAAATTGAAAATACCTCAG-TGTACCCTTATGCTCAATTCACC
1 AAAGACAGAAATTGAAAA-ATAGAAATTGAAAATACCTCAGATG-A-CCTAAGGCTCAACTCACC
87239345 TCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAA-TGAAAATTGAAAATACCTCAG
63 TCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAACTG-AAATTGAAAATACCTCAG
87239409 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAGCAAAAATTGA
127 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAGCAAAAATTGA
87239474 AAA
1 AAA
87239477 TACCTCAGTG
Statistics
Matches: 184, Mismatches: 5, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
188 2 0.01
189 3 0.02
190 150 0.82
191 29 0.16
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (191 bp):
AAAGACAGAAATTGAAAAATAGAAATTGAAAATACCTCAGATGACCTAAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAAACTGAAATTGAAAATACCTCAGCGTG
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAGCAAAAATTGA
Found at i:87239516 original size:76 final size:74
Alignment explanation
Indices: 87239390--87239617 Score: 332
Period size: 76 Copynumber: 3.1 Consensus size: 74
87239380 TTGAAAAATG
87239390 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
87239455 TTTAAAAAGCA
65 TTTGAAAA-CA
* ** *
87239466 AAAATTGAAAATACCTCAGTGTACCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
87239530 TGGCAAACA
66 TTGAAAACA
* * * *
87239539 TAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCATCTCTCGCAATATGAGTTGATTTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
87239604 TTGAAAACA
66 TTGAAAACA
87239613 AAAAT
1 AAAAT
87239618 AAAACATCAA
Statistics
Matches: 133, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
73 54 0.41
74 23 0.17
76 56 0.42
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (74 bp):
AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGAAAACA
Found at i:87239584 original size:73 final size:74
Alignment explanation
Indices: 87239390--87239603 Score: 304
Period size: 73 Copynumber: 2.9 Consensus size: 74
87239380 TTGAAAAATG
87239390 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
*
87239455 TTTAAAAAGCA
64 TTGAAAAAGCA
* ** *
87239466 AAAATTGAAAATACCTCAGTGTACCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
**
87239531 GGCAAA-CA
66 GAAAAAGCA
* * * *
87239539 TAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCATCTCTCGCAATATGAGTTGATTTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
87239604 TTGAAAACAA
Statistics
Matches: 123, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
73 59 0.48
74 8 0.07
76 56 0.46
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (74 bp):
AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GAAAAAGCA
Found at i:87252513 original size:29 final size:30
Alignment explanation
Indices: 87252463--87252519 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
87252453 GTATGCACGG
* *
87252463 GGGCTAAATTGAAAACCGTGAAAAATTTCA
1 GGGCCAAATTGAAAACCATGAAAAATTTCA
* *
87252493 GGGCCAAATT-AAAAGCATGAAAGATTT
1 GGGCCAAATTGAAAACCATGAAAAATTT
87252520 AATTGCAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 14 0.61
30 9 0.39
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.23
Consensus pattern (30 bp):
GGGCCAAATTGAAAACCATGAAAAATTTCA
Found at i:87256833 original size:15 final size:15
Alignment explanation
Indices: 87256813--87256842 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
87256803 GATAGTAAAG
87256813 CATGCGAAGTTTCAT
1 CATGCGAAGTTTCAT
87256828 CATGCGAAGTTTCAT
1 CATGCGAAGTTTCAT
87256843 TCTTCTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (15 bp):
CATGCGAAGTTTCAT
Found at i:87261737 original size:21 final size:20
Alignment explanation
Indices: 87261705--87261743 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
87261695 ATGTAGTTAT
*
87261705 TTTTTATAATTTTATTTGAA
1 TTTTTAAAATTTTATTTGAA
*
87261725 TTTTTAAAGATTTTTTTTG
1 TTTTTAAA-ATTTTATTTG
87261744 CTTTTTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.67
Consensus pattern (20 bp):
TTTTTAAAATTTTATTTGAA
Found at i:87262659 original size:18 final size:19
Alignment explanation
Indices: 87262630--87262691 Score: 81
Period size: 18 Copynumber: 3.2 Consensus size: 19
87262620 TGGTACATAT
87262630 ATTTTAATTATAATTTGAA
1 ATTTTAATTATAATTTGAA
* *
87262649 ATTTT-ATTATAAATTAATA
1 ATTTTAATTATAATTTGA-A
87262668 TATTTTAATTATAATTTGAA
1 -ATTTTAATTATAATTTGAA
87262688 ATTT
1 ATTT
87262692 ATTAAAAATC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 10 0.28
19 10 0.28
20 6 0.17
21 10 0.28
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
ATTTTAATTATAATTTGAA
Found at i:87262671 original size:39 final size:38
Alignment explanation
Indices: 87262626--87262700 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 38
87262616 AATATGGTAC
*
87262626 ATATATTTTAATTATAATTTGAAATTTTATTATAAATTA
1 ATATATTTTAATTATAATTTGAAA-TTTATTAAAAATTA
87262665 ATATATTTTAATTATAATTTGAAATTTATTAAAAAT
1 ATATATTTTAATTATAATTTGAAATTTATTAAAAAT
87262701 CACGTGCAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 11 0.31
39 24 0.69
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (38 bp):
ATATATTTTAATTATAATTTGAAATTTATTAAAAATTA
Found at i:87262696 original size:21 final size:20
Alignment explanation
Indices: 87262631--87262696 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 20
87262621 GGTACATATA
87262631 TTTTAATTATAATTTGAAA-
1 TTTTAATTATAATTTGAAAT
*
87262650 TTTT-ATTATAAATT-AATAT
1 TTTTAATTATAATTTGAA-AT
87262669 ATTTTAATTATAATTTGAAAT
1 -TTTTAATTATAATTTGAAAT
87262690 TTATTAA
1 TT-TTAA
87262697 AAATCACGTG
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 2 0.05
18 10 0.26
19 4 0.10
20 6 0.15
21 15 0.38
22 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
TTTTAATTATAATTTGAAAT
Found at i:87265674 original size:24 final size:26
Alignment explanation
Indices: 87265642--87265691 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
87265632 TTTTTCTTAT
*
87265642 TTTATTAAAT-AAA-AAATTTAAAAA
1 TTTAATAAATCAAATAAATTTAAAAA
*
87265666 TTTAATAAATCAAATATATTTAAAAA
1 TTTAATAAATCAAATAAATTTAAAAA
87265692 CATAAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 9 0.41
25 3 0.14
26 10 0.45
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
TTTAATAAATCAAATAAATTTAAAAA
Found at i:87265726 original size:21 final size:21
Alignment explanation
Indices: 87265677--87265735 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
87265667 TTAATAAATC
*
87265677 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
87265697 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
87265719 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
87265736 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:87266404 original size:21 final size:21
Alignment explanation
Indices: 87266374--87266421 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
87266364 ATGTTTGAAA
*
87266374 TTTTATATGAAATTTAAAATT
1 TTTTAAATGAAATTTAAAATT
87266395 TTTTAAATGAAATTTAAAATT
1 TTTTAAATGAAATTTAAAATT
87266416 TTTTAA
1 TTTTAA
87266422 CAATAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (21 bp):
TTTTAAATGAAATTTAAAATT
Found at i:87268301 original size:3 final size:3
Alignment explanation
Indices: 87268293--87268333 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
87268283 TATTTGTTCG
87268293 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
87268334 TCTGTGATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:87280066 original size:23 final size:23
Alignment explanation
Indices: 87280036--87280082 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
87280026 TGCCTACACA
87280036 AGCTGACAGTTTTTCAGATGCTT
1 AGCTGACAGTTTTTCAGATGCTT
87280059 AGCTGACAGTTTTTCAGATGCTT
1 AGCTGACAGTTTTTCAGATGCTT
87280082 A
1 A
87280083 CACAAGCTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.38
Consensus pattern (23 bp):
AGCTGACAGTTTTTCAGATGCTT
Found at i:87281228 original size:14 final size:15
Alignment explanation
Indices: 87281193--87281232 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
87281183 ACATAATTAG
*
87281193 ATTAAATCTTAATTA
1 ATTAAATCTTAATAA
*
87281208 ATCAAAT-TTAATAA
1 ATTAAATCTTAATAA
87281222 ATTAAATCTTA
1 ATTAAATCTTA
87281233 GTTAATTAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.42
Consensus pattern (15 bp):
ATTAAATCTTAATAA
Found at i:87281241 original size:15 final size:15
Alignment explanation
Indices: 87281186--87281241 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
87281176 CACCTTTACA
87281186 TAATTAGATTAAATCT
1 TAATTA-ATTAAATCT
*
87281202 TAATTAATCAAAT-T
1 TAATTAATTAAATCT
*
87281216 TAATAAATTAAATCT
1 TAATTAATTAAATCT
*
87281231 TAGTTAATTAA
1 TAATTAATTAA
87281242 CCTTAATCAC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 12 0.35
15 16 0.47
16 6 0.18
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (15 bp):
TAATTAATTAAATCT
Found at i:87281247 original size:29 final size:31
Alignment explanation
Indices: 87281193--87281257 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 31
87281183 ACATAATTAG
*
87281193 ATTAAATCTTAATTAATCAAATTTAAT-A-A
1 ATTAAATCTTAATTAATCAAACTTAATCACA
* * *
87281222 ATTAAATCTTAGTTAATTAACCTTAATCACA
1 ATTAAATCTTAATTAATCAAACTTAATCACA
87281253 ATTAA
1 ATTAA
87281258 TAAAAATTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 23 0.77
30 1 0.03
31 6 0.20
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.40
Consensus pattern (31 bp):
ATTAAATCTTAATTAATCAAACTTAATCACA
Found at i:87292325 original size:23 final size:23
Alignment explanation
Indices: 87292253--87292325 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
87292243 CTTTGTTTGT
* *
87292253 TATGCAAACTCACATGTTAGCAG
1 TATGCAAACTCACATATTAGTAG
** *
87292276 TATGTGAA-TCA-ATATATATTTA-
1 TATGCAAACTCACATAT-TA-GTAG
87292298 TATGCAAACTCACATATTAGTAG
1 TATGCAAACTCACATATTAGTAG
87292321 TATGC
1 TATGC
87292326 GAACATATAT
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
21 3 0.08
22 13 0.35
23 17 0.46
24 4 0.11
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (23 bp):
TATGCAAACTCACATATTAGTAG
Found at i:87292357 original size:46 final size:46
Alignment explanation
Indices: 87292230--87292445 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 46
87292220 ATGTTACAAA
* * * **
87292230 TATGCGAA-CCTATCTTTGTTTGTTATGCAAACTCACATGTTAGCAG
1 TATGCGAACCCTATATATGTCT-TTATGCAAACTCACACATTAGCAG
* ** * * *
87292276 TATGTGAATCAATATATAT-T-TATATGCAAACTCACATATTAGTAG
1 TATGCGAA-CCCTATATATGTCTTTATGCAAACTCACACATTAGCAG
* * * *
87292321 TATGCGAA-CATATATATGTCTGTTATGCAAACTCACACGTTGGTAG
1 TATGCGAACCCTATATATGTCT-TTATGCAAACTCACACATTAGCAG
* * *
87292367 TATG-GAACCCTATATACGCCTTTATGCAAACTCACACATCAGCAG
1 TATGCGAACCCTATATATGTCTTTATGCAAACTCACACATTAGCAG
* * *
87292412 TATGTGAACCCTATATACGCCTTTATGCAAACTC
1 TATGCGAACCCTATATATGTCTTTATGCAAACTC
87292446 GTATGATTAG
Statistics
Matches: 142, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
43 8 0.06
44 1 0.01
45 56 0.39
46 71 0.50
47 1 0.01
48 5 0.04
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (46 bp):
TATGCGAACCCTATATATGTCTTTATGCAAACTCACACATTAGCAG
Found at i:87292382 original size:91 final size:91
Alignment explanation
Indices: 87292230--87292445 Score: 222
Period size: 91 Copynumber: 2.4 Consensus size: 91
87292220 ATGTTACAAA
* * * * * *
87292230 TATGCGAACCTATCTTTGTTTGTTATGCAAACTCACATGTTAGCAGTATGTGAATCAATATA-TA
1 TATGCGAACCTATATATGTCTGTTATGCAAACTCACACGTTAGCAGTATGTGAACCAATATACGA
* * * *
87292294 TTTATATGCAAACTCACATATTAGTAG
66 CTT-TATGCAAACTCACACATCAGCAG
* * * *
87292321 TATGCGAACATATATATGTCTGTTATGCAAACTCACACGTTGGTAGTATG-GAACCCTATATACG
1 TATGCGAACCTATATATGTCTGTTATGCAAACTCACACGTTAGCAGTATGTGAA-CCAATATACG
*
87292385 CCTTTATGCAAACTCACACATCAGCAG
65 ACTTTATGCAAACTCACACATCAGCAG
* * *
87292412 TATGTGAACCCTATATACGCCT-TTATGCAAACTC
1 TATGCGAA-CCTATATATGTCTGTTATGCAAACTC
87292446 GTATGATTAG
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
90 3 0.03
91 88 0.85
92 12 0.12
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (91 bp):
TATGCGAACCTATATATGTCTGTTATGCAAACTCACACGTTAGCAGTATGTGAACCAATATACGA
CTTTATGCAAACTCACACATCAGCAG
Found at i:87294173 original size:14 final size:14
Alignment explanation
Indices: 87294152--87294188 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
87294142 TCTATGTTTC
87294152 TTTTCTTTTT-TTT
1 TTTTCTTTTTATTT
87294165 TTGTTCTTTTTATTT
1 TT-TTCTTTTTATTT
87294180 TTTTCTTTT
1 TTTTCTTTT
87294189 GAACCAGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 15 0.68
15 5 0.23
ACGTcount: A:0.03, C:0.08, G:0.03, T:0.86
Consensus pattern (14 bp):
TTTTCTTTTTATTT
Found at i:87296263 original size:62 final size:62
Alignment explanation
Indices: 87296160--87296303 Score: 216
Period size: 62 Copynumber: 2.3 Consensus size: 62
87296150 ACGGTGTTAT
* * * ** *
87296160 AGTTACACGGCCTTGGCACACGCCCGTGTTCCTGGCTGTGTGGTTTTATACCATGAACAATG
1 AGTTACACGGCCTGGGCACACGCCAGTGTCCCTAACCGTGTGGTTTTATACCATGAACAATG
*
87296222 AGTTACACGGCCTGGGCACACGCCAGTGTCCCTAACCGTGTGGTTTTATACCATGAACAGTG
1 AGTTACACGGCCTGGGCACACGCCAGTGTCCCTAACCGTGTGGTTTTATACCATGAACAATG
*
87296284 AGTTACACGGCCTGAGCACA
1 AGTTACACGGCCTGGGCACA
87296304 TGCTCGTGGC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 74 1.00
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (62 bp):
AGTTACACGGCCTGGGCACACGCCAGTGTCCCTAACCGTGTGGTTTTATACCATGAACAATG
Found at i:87296326 original size:62 final size:60
Alignment explanation
Indices: 87296160--87296326 Score: 208
Period size: 62 Copynumber: 2.7 Consensus size: 60
87296150 ACGGTGTTAT
* *
87296160 AGTTACACGGCCTTGGCACACGCCCGTGTTCCTGGCTGTGTGGTTTTATACCATGAACAATG
1 AGTTACACGGCC-TGGCACACG-CCGTGTCCCTGGCCGTGTGGTTTTATACCATGAACAATG
** *
87296222 AGTTACACGGCCTGGGCACACGCCAGTGTCCCTAACCGTGTGGTTTTATACCATGAACAGTG
1 AGTTACACGGCCT-GGCACACGCC-GTGTCCCTGGCCGTGTGGTTTTATACCATGAACAATG
* * *
87296284 AGTTACACGGCCTGAGCACATGCTCGTGGCCCTGGCCATGTGG
1 AGTTACACGGCCTG-GCACACGC-CGTGTCCCTGGCCGTGTGG
87296327 ATCCTGCACT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
61 4 0.04
62 86 0.95
63 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.25
Consensus pattern (60 bp):
AGTTACACGGCCTGGCACACGCCGTGTCCCTGGCCGTGTGGTTTTATACCATGAACAATG
Found at i:87304477 original size:29 final size:29
Alignment explanation
Indices: 87304435--87304505 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
87304425 GACGAGATTA
87304435 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
87304464 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
87304493 GCACTAAGTGTGC
1 GCACTAAGTGTGC
87304506 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:87304521 original size:29 final size:29
Alignment explanation
Indices: 87304435--87304565 Score: 106
Period size: 29 Copynumber: 4.5 Consensus size: 29
87304425 GACGAGATTA
* **
87304435 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
* **
87304464 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
**
87304493 GCACTAAGTGTGCGAGCTCGAAGGGTATG
1 GCACTAAGTGTGCGAGCTCGAAACGTATG
* * * *
87304522 GCACTATGTGTGCGGGCT-TAAATCGCATG
1 GCACTAAGTGTGCGAGCTCGAAA-CGTATG
87304551 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
87304566 AATCGAGTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
28 2 0.02
29 85 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTCGAAACGTATG
Found at i:87307931 original size:37 final size:36
Alignment explanation
Indices: 87307864--87307942 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 36
87307854 TATTTTAAAT
* **
87307864 TTTTTATTTTTTACAATCTTTTATGATTTCTAATAA
1 TTTTTATTTTTTACAATCATTTAAAATTTCTAATAA
*
87307900 TTTTTATTTTTTTACAAT-ATTTAAAATTTTCTAGTAA
1 TTTTTA-TTTTTTACAATCATTTAAAA-TTTCTAATAA
87307937 TTTTTA
1 TTTTTA
87307943 ATAATTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 11 0.30
37 26 0.70
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (36 bp):
TTTTTATTTTTTACAATCATTTAAAATTTCTAATAA
Found at i:87309044 original size:26 final size:26
Alignment explanation
Indices: 87309015--87309140 Score: 200
Period size: 26 Copynumber: 4.8 Consensus size: 26
87309005 TGATAATAGG
87309015 TTAGGTAAATGTTTCATGATAATGTA
1 TTAGGTAAATGTTTCATGATAATGTA
*
87309041 TTAGGTAAATGTTTCATGATAATAG-G
1 TTAGGTAAATGTTTCATGATAAT-GTA
*
87309067 TTAGGTAAATGTTTTATGATAATGTA
1 TTAGGTAAATGTTTCATGATAATGTA
**
87309093 TTAGGTAAATGTTTCATGATAATGGG
1 TTAGGTAAATGTTTCATGATAATGTA
87309119 TTAGGTAAATGTTTCATGATAA
1 TTAGGTAAATGTTTCATGATAA
87309141 GAATTTCATG
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
25 1 0.01
26 90 0.98
27 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.41
Consensus pattern (26 bp):
TTAGGTAAATGTTTCATGATAATGTA
Found at i:87309067 original size:52 final size:52
Alignment explanation
Indices: 87309005--87309140 Score: 254
Period size: 52 Copynumber: 2.6 Consensus size: 52
87308995 TGATACAAAT
87309005 TGATAATAGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
*
87309057 TGATAATAGGTTAGGTAAATGTTTTATGATAATGTATTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
*
87309109 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAA
87309141 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 81 1.00
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.40
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
Found at i:87312353 original size:12 final size:12
Alignment explanation
Indices: 87312336--87312378 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
87312326 ACTCGGGGAA
87312336 GAGGCCGTGGTC
1 GAGGCCGTGGTC
87312348 GAGGCCGTGGTC
1 GAGGCCGTGGTC
87312360 GAGGCCGTGGTC
1 GAGGCCGTGGTC
87312372 GAGGCCG
1 GAGGCCG
87312379 AGGTAGTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.09, C:0.26, G:0.51, T:0.14
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:87317225 original size:13 final size:12
Alignment explanation
Indices: 87317207--87317300 Score: 50
Period size: 13 Copynumber: 7.3 Consensus size: 12
87317197 AGGTTAGGTA
87317207 AATGTTTCATGAT
1 AATGTTT-ATGAT
*
87317220 AATGTTTA-GGT
1 AATGTTTATGAT
87317231 AAATGTTTCATGAT
1 -AATGTTT-ATGAT
* *
87317245 AATGGGTTA-GGT
1 AAT-GTTTATGAT
87317257 AAATGTTTTATGAT
1 -AATG-TTTATGAT
*
87317271 AATGTATTA-GGT
1 AATGT-TTATGAT
87317283 AAATGTTTCATGAT
1 -AATGTTT-ATGAT
87317297 AATG
1 AATG
87317301 GGTTAGGTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 22
0.67 0.09 0.24
Matches are distributed among these distances:
11 2 0.03
12 16 0.26
13 35 0.56
14 9 0.15
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.43
Consensus pattern (12 bp):
AATGTTTATGAT
Found at i:87317253 original size:51 final size:52
Alignment explanation
Indices: 87317190--87317324 Score: 245
Period size: 52 Copynumber: 2.6 Consensus size: 52
87317180 TGATACAAAT
*
87317190 TGATAATAGGTTAGGTAAATGTTTCATGATAATGT-TTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
*
87317241 TGATAATGGGTTAGGTAAATGTTTTATGATAATGTATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
87317293 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAA
87317325 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 33 0.41
52 47 0.59
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.41
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
Found at i:87317261 original size:26 final size:26
Alignment explanation
Indices: 87317190--87317324 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
87317180 TGATACAAAT
*
87317190 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
87317216 TGATAAT-GTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
87317241 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTCA
**
87317267 TGATAATGTATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87317293 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87317319 TGATAA
1 TGATAA
87317325 GAATTTCATG
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
25 24 0.24
26 76 0.76
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.41
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:87320243 original size:19 final size:19
Alignment explanation
Indices: 87320198--87320246 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
87320188 TAACAATTAG
*
87320198 AAAAATA-AAAAATTGTAA
1 AAAAATATAAAAATCGTAA
***
87320216 AATTTTATAAAAATCGTAA
1 AAAAATATAAAAATCGTAA
87320235 AAAAATATAAAA
1 AAAAATATAAAA
87320247 TATATAGAAA
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
AAAAATATAAAAATCGTAA
Found at i:87321249 original size:7 final size:7
Alignment explanation
Indices: 87321238--87321291 Score: 81
Period size: 7 Copynumber: 7.7 Consensus size: 7
87321228 AATCACTTTG
*
87321238 GTTTAGG
1 GTTTAGA
87321245 GTTTAGA
1 GTTTAGA
*
87321252 GTTTAAA
1 GTTTAGA
87321259 GTTTAGA
1 GTTTAGA
87321266 GTTTAGA
1 GTTTAGA
*
87321273 ATTTAGA
1 GTTTAGA
87321280 GTTTAGA
1 GTTTAGA
87321287 GTTTA
1 GTTTA
87321292 CTGACTTCTC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (7 bp):
GTTTAGA
Found at i:87321819 original size:7 final size:6
Alignment explanation
Indices: 87321792--87321816 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
87321782 TTATAAAAAA
87321792 TAATTT TAATTT TAATTT TAATTT T
1 TAATTT TAATTT TAATTT TAATTT T
87321817 TAAAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TAATTT
Found at i:87329769 original size:22 final size:22
Alignment explanation
Indices: 87329744--87329788 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
87329734 GAGTTACTAT
* *
87329744 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAAGGG
* *
87329766 TTTAGGGATTATGGTTTAAGGG
1 TTTAAGGATTATGGATTAAGGG
87329788 T
1 T
87329789 GATTTAAGGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (22 bp):
TTTAAGGATTATGGATTAAGGG
Found at i:87329787 original size:15 final size:15
Alignment explanation
Indices: 87329749--87329783 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
87329739 ACTATTTTAA
*
87329749 GGTTTATGGATTATG
1 GGTTTAGGGATTATG
87329764 GGTTTAGGGATTAT-
1 GGTTTAGGGATTATG
87329778 GGTTTA
1 GGTTTA
87329784 AGGGTGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:87329887 original size:7 final size:7
Alignment explanation
Indices: 87329744--87329909 Score: 77
Period size: 7 Copynumber: 22.7 Consensus size: 7
87329734 GAGTTACTAT
*
87329744 TTTAAGG
1 TTTAGGG
*
87329751 TTTATGG
1 TTTAGGG
*
87329758 ATTATGGG
1 TTTA-GGG
87329766 TTTAGGG
1 TTTAGGG
* *
87329773 ATTATGG
1 TTTAGGG
87329780 TTTAAGGGTG
1 TTT-A-GG-G
87329790 ATTTAAGGG
1 -TTT-AGGG
*
87329799 -TTGGGG
1 TTTAGGG
*
87329805 TTTAAGG
1 TTTAGGG
87329812 TTTAAGGG
1 TTT-AGGG
87329820 -TTAGGGG
1 TTTA-GGG
*
87329827 TTAAGGG
1 TTTAGGG
*
87329834 -TGATGGG
1 TTTA-GGG
*
87329841 TTAAGGG
1 TTTAGGG
87329848 TTTAGGG
1 TTTAGGG
* *
87329855 TTTATGT
1 TTTAGGG
*
87329862 TTTAGGA
1 TTTAGGG
87329869 TTTAGGG
1 TTTAGGG
87329876 TTTAGGG
1 TTTAGGG
87329883 TTTAGGG
1 TTTAGGG
* * *
87329890 ATCAGTAG
1 TTTAG-GG
87329898 TTTAGGG
1 TTTAGGG
87329905 TTTAG
1 TTTAG
87329910 ATTAGTTAGT
Statistics
Matches: 120, Mismatches: 27, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
6 6 0.05
7 87 0.73
8 17 0.14
9 2 0.02
10 3 0.03
11 5 0.04
ACGTcount: A:0.21, C:0.01, G:0.38, T:0.40
Consensus pattern (7 bp):
TTTAGGG
Found at i:87330029 original size:14 final size:14
Alignment explanation
Indices: 87330012--87330047 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
87330002 ATTATAGTTC
87330012 AGGGTTTATGATTT
1 AGGGTTTATGATTT
* *
87330026 AGGGTATATGGTTT
1 AGGGTTTATGATTT
87330040 AGGGTTTA
1 AGGGTTTA
87330048 AAGTGTATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (14 bp):
AGGGTTTATGATTT
Found at i:87330091 original size:15 final size:14
Alignment explanation
Indices: 87330071--87330105 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
87330061 ACTATTTTAA
*
87330071 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
87330085 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
87330100 GGTTTA
1 GGTTTA
87330106 AGGTTATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:87330712 original size:7 final size:7
Alignment explanation
Indices: 87330700--87330724 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
87330690 ATCTTCAAAA
87330700 AAAATTT
1 AAAATTT
87330707 AAAATTT
1 AAAATTT
87330714 AAAATTT
1 AAAATTT
87330721 AAAA
1 AAAA
87330725 ATAAAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:87330725 original size:15 final size:15
Alignment explanation
Indices: 87330698--87330768 Score: 65
Period size: 14 Copynumber: 4.7 Consensus size: 15
87330688 AAATCTTCAA
87330698 AAAAAATTTAAAATT
1 AAAAAATTTAAAATT
* *
87330713 -TAAAATTTAAAAAT
1 AAAAAATTTAAAATT
87330727 AAAAAATTTTAAAA-T
1 AAAAAA-TTTAAAATT
** *
87330742 AAAAAATAAAAAACGT
1 AAAAAATTTAAAA-TT
87330758 AAAAAATTTAA
1 AAAAAATTTAA
87330769 TATTTAATAT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
14 17 0.38
15 11 0.24
16 17 0.38
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (15 bp):
AAAAAATTTAAAATT
Found at i:87330731 original size:30 final size:31
Alignment explanation
Indices: 87330697--87330780 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 31
87330687 AAAATCTTCA
87330697 AAAAAAATTTAAAATTTAAAATTTAAAAA-T
1 AAAAAAATTTAAAATTTAAAATTTAAAAACT
* * * *
87330727 AAAAAATTTTAAAA-TAAAAAATAAAAAACGT
1 AAAAAAATTTAAAATTTAAAATTTAAAAAC-T
* *
87330758 -AAAAAATTTAATATTTAATATTT
1 AAAAAAATTTAAAATTTAAAATTT
87330781 TAGTTCATAT
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
29 11 0.27
30 24 0.59
31 6 0.15
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (31 bp):
AAAAAAATTTAAAATTTAAAATTTAAAAACT
Found at i:87330739 original size:16 final size:15
Alignment explanation
Indices: 87330697--87330748 Score: 68
Period size: 15 Copynumber: 3.5 Consensus size: 15
87330687 AAAATCTTCA
*
87330697 AAAAAAATTTAAAAT
1 AAAAAATTTTAAAAT
** *
87330712 TTAAAATTTAAAAAT
1 AAAAAATTTTAAAAT
87330727 AAAAAATTTTAAAAT
1 AAAAAATTTTAAAAT
87330742 AAAAAAT
1 AAAAAAT
87330749 AAAAAACGTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAAATTTTAAAAT
Found at i:87330746 original size:22 final size:22
Alignment explanation
Indices: 87330698--87330754 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
87330688 AAATCTTCAA
**
87330698 AAAAAATTTAAAATTTAAAATT
1 AAAAAATAAAAAATTTAAAATT
*
87330720 TAAAAATAAAAAATTTTAAAA-T
1 AAAAAATAAAAAA-TTTAAAATT
87330742 AAAAAATAAAAAA
1 AAAAAATAAAAAA
87330755 CGTAAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 23 0.77
23 7 0.23
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (22 bp):
AAAAAATAAAAAATTTAAAATT
Found at i:87330951 original size:41 final size:41
Alignment explanation
Indices: 87330906--87331030 Score: 128
Period size: 41 Copynumber: 3.0 Consensus size: 41
87330896 AAAAACAATC
* *
87330906 AAAATTAAGCAATAGTGGCATTTTTGGGT-AAAACGCCACAA
1 AAAATTAAGCTATAGTGGCATTTTT-AGTAAAAACGCCACAA
* **
87330947 AAAATTGAA-CTATAGTGGCGTTTTTAGTAAAAACGCCGTAA
1 AAAATT-AAGCTATAGTGGCATTTTTAGTAAAAACGCCACAA
* ** **
87330988 AAAATTGAGCTATAGTGGTGTTTTTACCAAAAACGCCACAA
1 AAAATTAAGCTATAGTGGCATTTTTAGTAAAAACGCCACAA
87331029 AA
1 AA
87331031 GACCATTGTT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
40 3 0.04
41 65 0.93
42 2 0.03
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.26
Consensus pattern (41 bp):
AAAATTAAGCTATAGTGGCATTTTTAGTAAAAACGCCACAA
Found at i:87335361 original size:43 final size:43
Alignment explanation
Indices: 87335313--87335521 Score: 274
Period size: 43 Copynumber: 4.9 Consensus size: 43
87335303 AAGGTTATAT
* ** *
87335313 TCTTTAGCGGCGTTTGTGAAAAAAGCGCCGTTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGCGGGAAAAGCGCCGCTAAAGGTCATGG
* *
87335356 TCTTTAGAGGCATTTGCGGGAAAAGCGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGCGGGAAAAGCGCCGCTAAAGGTCATGG
** * * * * *
87335399 AATTTAGTGGTGTTTGCGGGAAAAACGCCACTAAAGGTCAGGG
1 TCTTTAGCGGCGTTTGCGGGAAAAGCGCCGCTAAAGGTCATGG
**
87335442 TCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGCGGGAAAAGCGCCGCTAAAGGTCATGG
*
87335485 TCTTTAGTGGCGTTTGCGGGAAAAGCGCCGCTAAAGG
1 TCTTTAGCGGCGTTTGCGGGAAAAGCGCCGCTAAAGG
87335522 CAAAAAAACT
Statistics
Matches: 140, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 140 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGCGGGAAAAGCGCCGCTAAAGGTCATGG
Found at i:87342529 original size:15 final size:15
Alignment explanation
Indices: 87342478--87342530 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
87342468 ACCAAGTAGT
87342478 AATAATATAAAAATG
1 AATAATATAAAAATG
* *
87342493 -ACAATAATGAAAAT-
1 AATAAT-ATAAAAATG
87342507 AATAAATATAAAAATG
1 AAT-AATATAAAAATG
87342523 AATAATAT
1 AATAATAT
87342531 GATATACGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 4 0.13
15 20 0.67
16 6 0.20
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.26
Consensus pattern (15 bp):
AATAATATAAAAATG
Found at i:87342555 original size:37 final size:38
Alignment explanation
Indices: 87342503--87342574 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 38
87342493 ACAATAATGA
87342503 AAATAATAAATATAAAAA-TGAATA-ATATGATATACGG
1 AAATAATAAATATAAAAAGTGAATATATATG-TATACGG
*
87342540 AAATAATACAA-ATAAAAAGTGTATATATATGTATA
1 AAATAATA-AATATAAAAAGTGAATATATATGTATA
87342575 ATAAAACATG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
37 15 0.48
38 11 0.35
39 5 0.16
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.29
Consensus pattern (38 bp):
AAATAATAAATATAAAAAGTGAATATATATGTATACGG
Found at i:87342790 original size:24 final size:25
Alignment explanation
Indices: 87342743--87342793 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
87342733 ATACATGTTC
*
87342743 ATAATATATAAAACATACATATAAT
1 ATAATATATAAAACATACACATAAT
**
87342768 ATAATAT-TAAAACATTTACATAAT
1 ATAATATATAAAACATACACATAAT
87342792 AT
1 AT
87342794 GTACACACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATATATAAAACATACACATAAT
Found at i:87342890 original size:21 final size:21
Alignment explanation
Indices: 87342866--87342905 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
87342856 AAGATATACT
*
87342866 TATATAAATATATATTAAAGA
1 TATATAAATATATAATAAAGA
*
87342887 TATATACATATATAATAAA
1 TATATAAATATATAATAAA
87342906 ATACATGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TATATAAATATATAATAAAGA
Found at i:87342988 original size:20 final size:20
Alignment explanation
Indices: 87342960--87342997 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
87342950 TAAAAATAAT
*
87342960 AATATACATAATATATACAA
1 AATACACATAATATATACAA
87342980 AATACACATAATATATAC
1 AATACACATAATATATAC
87342998 GTATATAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (20 bp):
AATACACATAATATATACAA
Found at i:87345318 original size:17 final size:19
Alignment explanation
Indices: 87345276--87345319 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
87345266 ATGAAATTTT
*
87345276 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
87345295 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
87345313 AA-TATTA
1 AATTATTA
87345320 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:87347220 original size:16 final size:16
Alignment explanation
Indices: 87347201--87347235 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
87347191 AACCTAACCC
*
87347201 AAAAAAAA-ACAAAGA
1 AAAAAAAAGAAAAAGA
87347216 AAAAAAAAGAAAAAGA
1 AAAAAAAAGAAAAAGA
87347232 AAAA
1 AAAA
87347236 CCTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.89, C:0.03, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAAGA
Found at i:87347250 original size:16 final size:15
Alignment explanation
Indices: 87347231--87347265 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
87347221 AAAGAAAAAG
*
87347231 AAAAACCTACCCCAA
1 AAAAACCTAACCCAA
87347246 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
87347261 AAAAA
1 AAAAA
87347266 AAAGAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:87347266 original size:16 final size:15
Alignment explanation
Indices: 87347231--87347266 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
87347221 AAAGAAAAAG
*
87347231 AAAAACCTACCCCAA
1 AAAAACCTACCCAAA
87347246 AAAAACCTAACCCAAA
1 AAAAACCT-ACCCAAA
87347262 AAAAA
1 AAAAA
87347267 AAGAAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.64, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTACCCAAA
Found at i:87347869 original size:2 final size:2
Alignment explanation
Indices: 87347864--87347898 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
87347854 TAAATACTAT
*
87347864 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
87347899 TTTAAATACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:87352692 original size:195 final size:195
Alignment explanation
Indices: 87352360--87352749 Score: 753
Period size: 195 Copynumber: 2.0 Consensus size: 195
87352350 GCAATCCTGG
87352360 TATCACCAGACAGGAACCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
1 TATCACCAGACAGGAACCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
87352425 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
66 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
87352490 GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
131 GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
* *
87352555 TATCACCAGACGGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
1 TATCACCAGACAGGAACCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
87352620 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
66 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
*
87352685 GGTGTACGGGGATTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
131 GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
87352750 AATTGATTAA
Statistics
Matches: 192, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
195 192 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (195 bp):
TATCACCAGACAGGAACCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
Found at i:87355471 original size:71 final size:69
Alignment explanation
Indices: 87355277--87355540 Score: 323
Period size: 71 Copynumber: 3.7 Consensus size: 69
87355267 GAGTTAAGCC
* *
87355277 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
87355342 GAGGTAT
63 GAGGTAT
* * ** * *
87355349 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
87355413 AGGTAT
64 AGGTAT
87355419 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
*
87355484 AAGTAT
64 AGGTAT
* * ** * *
87355490 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
87355541 TTTAATTTTT
Statistics
Matches: 166, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
69 35 0.21
70 56 0.34
71 59 0.36
72 16 0.10
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:87355585 original size:122 final size:123
Alignment explanation
Indices: 87355419--87355664 Score: 388
Period size: 122 Copynumber: 2.0 Consensus size: 123
87355409 GTTGAGGTAT
87355419 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
87355484 AAGTATTTT-TAGTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AAGTATTTTCAAGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
87355540 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * * *
87355605 GAGGTATTTTCAATTTTTTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAAGTATTTTCAAGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
87355664 T
1 T
87355665 CAGGTCACGC
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
121 12 0.11
122 59 0.52
123 14 0.12
124 28 0.25
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (123 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AAGTATTTTCAAGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:87355664 original size:71 final size:71
Alignment explanation
Indices: 87355540--87355987 Score: 247
Period size: 71 Copynumber: 6.2 Consensus size: 71
87355530 GAGTTAAGCC
* ** * *
87355540 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTCTG-TTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
87355604 TGAGGTA
65 TGAGGTA
* *
87355611 TTTTCAATTTTTTGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTCTGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
87355675 TGAGGTA
65 TGAGGTA
* * * ** * *** *
87355682 TTTTCAATTTCTGTTTTCAATTT--ACGT--TATT-CAAGA-ATCAACTCATATTGCGAGAGG-T
1 TTTTCAATTTCTGTTTTCAATTTCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-C-AG-GGCA
* * ***
87355740 GGTTGA-ACC
62 CGCTGAGGTA
* ** * *
87355749 TTTT-AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC
1 TTTTCAATTTCT--GTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCAC
87355812 ATGCTGAGGTA
63 --GCTGAGGTA
* ** *
87355823 TTTTCAATTTCTGTCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
1 TTTTCAATTTCTGT-TTTC-------AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* *
87355888 GACACGTTGAGGTA
58 GGCACGCTGAGGTA
* * * ** * **
87355902 ATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-GACACAT
1 TTTTCAATTTCTGTTTTC-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
87355966 TGAGGTA
65 TGAGGTA
*
87355973 ATTTCAATTTCTGTT
1 TTTTCAATTTCTGTT
87355988 CAAAATGAGT
Statistics
Matches: 293, Mismatches: 54, Indels: 60
0.72 0.13 0.15
Matches are distributed among these distances:
66 12 0.04
67 9 0.03
68 18 0.06
69 5 0.02
70 12 0.04
71 95 0.32
72 50 0.17
73 16 0.05
74 8 0.03
75 7 0.02
78 4 0.01
79 20 0.07
81 36 0.12
82 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (71 bp):
TTTTCAATTTCTGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:87355797 original size:263 final size:261
Alignment explanation
Indices: 87355110--87355701 Score: 795
Period size: 263 Copynumber: 2.3 Consensus size: 261
87355100 TTTCAAGGAA
* * *
87355110 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGATGTATTTTTAATTGT-TG
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATT-TCTG
* * ** * * * * *
87355174 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTG-AG-GTATT---
65 TTTTC-AAATCAACT-ATATTGCAAGAAGTCAACTCAGACTCGGGGCACGCTGAAGCATTTTAAG
* *
87355234 TTTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
128 TTTATGTTTTAAAATCACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
87355298 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTG
193 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTG
87355363 TTTT
258 TTTT
* * *
87355367 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGT
* * ** * * * *
87355432 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAAGTATTTTTAGT
66 TTTC-AAATCAACT-ATATTGCAAGAAGTCAACTCAGACTCGGGGCACGCTGAAGCATTTTAAGT
* *
87355497 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
129 TTATGTTTTAAAATCACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
87355562 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT-TGT
194 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
87355626 TTT
259 TTT
* * *
87355629 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCT
87355694 GTTTTCAA
64 GTTTTCAA
87355702 TTTACGTTAT
Statistics
Matches: 316, Mismatches: 10, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
256 1 0.00
257 113 0.36
258 2 0.01
259 3 0.01
262 12 0.04
263 124 0.39
264 61 0.19
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (261 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGT
TTTCAAATCAACTATATTGCAAGAAGTCAACTCAGACTCGGGGCACGCTGAAGCATTTTAAGTTT
ATGTTTTAAAATCACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATC
AACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTT
T
Found at i:87355998 original size:48 final size:50
Alignment explanation
Indices: 87355942--87356037 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 50
87355932 ATATTGCGAG
87355942 AAATGAGTTGAGCCTCAG-ACACAT-TGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAGTACACATCTGAGGTAATTTCAATTTCTGTTCA
* * *
87355990 AAATGAGTTGAGCCTCGGTCCACATGCTGAGGTATTTTCAATTTCTGT
1 AAATGAGTTGAGCCTCAGTACACAT-CTGAGGTAATTTCAATTTCTGT
87356038 CTTTCAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
51 20 0.48
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (50 bp):
AAATGAGTTGAGCCTCAGTACACATCTGAGGTAATTTCAATTTCTGTTCA
Found at i:87356134 original size:199 final size:198
Alignment explanation
Indices: 87355792--87356351 Score: 793
Period size: 199 Copynumber: 2.8 Consensus size: 198
87355782 TTGCGAGAGG
87355792 TGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATTCAA
1 TGAGTTGAGCCTCGG-TCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATTCAA
87355857 CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAA
65 CTCATATTGC-AGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAA
87355922 AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACATTGAGGTAATTTCAATTTCTGT
129 AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACATTGAGGTAATTTCAATTTCTGT
87355987 TCAAAA
194 TC-AAA
*
87355993 TGAGTTGAGCCTCGGTCCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAA
1 TGAGTTGAGCCTCGGT-CACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATTCAA
87356058 CTCATATTGC-GAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAAA
65 CTCATATTGCAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAAA
* *
87356122 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGTTAATTTCAATTTCTGT
130 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACACATTGAGGTAATTTCAATTTCTGT
87356187 TCAAA
194 TCAAA
* * *
87356192 TGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAATTTCTGT-TTTC------AAAATTCAA
1 TGAGTTGAGCCTC-GGTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATTCAA
* * * * *
87356248 CTCATATTGCGAGAAATGAGTTG-GCCTCAAGACATGCTGAGATATTTTCAATTT-TGTTTGTCA
65 CTCATATTGC-AGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTT-TC-
* * ****
87356311 AAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAG
127 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
87356352 GTCACACGCC
Statistics
Matches: 333, Mismatches: 18, Indels: 25
0.89 0.05 0.07
Matches are distributed among these distances:
190 22 0.07
191 29 0.09
192 13 0.04
193 32 0.10
196 4 0.01
197 25 0.08
199 105 0.32
200 31 0.09
201 72 0.22
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (198 bp):
TGAGTTGAGCCTCGGTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATTCAAC
TCATATTGCAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAAAA
TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACATTGAGGTAATTTCAATTTCTGTTC
AAA
Found at i:87356157 original size:72 final size:70
Alignment explanation
Indices: 87356049--87356184 Score: 236
Period size: 72 Copynumber: 1.9 Consensus size: 70
87356039 TTTCAAAAAA
87356049 AAAAATCAACTCATATTGCGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTA
1 AAAAATCAACTCATATTGCGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTA
87356114 TTTTC
66 TTTTC
* *
87356119 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGTTAATTTCAATTTC
1 AAAAATCAACTCATATTGC--GAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
87356184 T
64 T
87356185 GTTCAAATGA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
70 18 0.29
72 44 0.71
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (70 bp):
AAAAATCAACTCATATTGCGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTA
TTTTC
Found at i:87356198 original size:48 final size:48
Alignment explanation
Indices: 87356141--87356235 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 48
87356131 ATATTGCGAG
* *
87356141 AAATGAGTTGAGCCTCAAGACACGTTGAGTTAATTTCAATTTCTGTTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTC
87356189 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
87356236 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (48 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTC
Found at i:87356288 original size:71 final size:73
Alignment explanation
Indices: 87356189--87356333 Score: 206
Period size: 71 Copynumber: 2.0 Consensus size: 73
87356179 ATTTCTGTTC
* *
87356189 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTT-TC-AAAATTCAACTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTT-TGTTTGTCAAAAAATCAACTCA
87356252 TATTGCGAG
65 TATTGCGAG
* * *
87356261 AAATGAGTTG-GCCTCAAGACATGCTGAGATATTTTCAATTTTGTTTGTCAAAAAAATCAACTCG
1 AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTTGTTTGTC-AAAAAATCAACTCA
87356325 TATTGCGAG
65 TATTGCGAG
87356334 TGGCGAGTTG
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
70 5 0.08
71 30 0.46
72 10 0.15
73 20 0.31
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (73 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTTGTTTGTCAAAAAATCAACTCAT
ATTGCGAG
Found at i:87356505 original size:74 final size:75
Alignment explanation
Indices: 87356399--87356543 Score: 229
Period size: 74 Copynumber: 1.9 Consensus size: 75
87356389 TTTTTGCCTT
*
87356399 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACACGCTGAGGTAATTTCA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACGCTGAGGTAATTTCA
87356463 ATTTCTGTTG
66 ATTTCTGTTG
* * * *
87356473 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTTGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-CACACGCTGAGGTAATTTC
87356538 AATTTC
65 AATTTC
87356544 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 42 0.66
76 22 0.34
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (75 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACGCTGAGGTAATTTCA
ATTTCTGTTG
Found at i:87356515 original size:165 final size:166
Alignment explanation
Indices: 87356239--87356717 Score: 612
Period size: 165 Copynumber: 2.9 Consensus size: 166
87356229 TTCTGTTTTC
* ** * * * *
87356239 AAAATTCAACTCATATTGCGAGAAATGAGTTG-GCCTCAAGACATGCTGAGATATTTTCAATTT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * **
87356302 TGTTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGT
66 TG-TTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTTGAGGT
* *
87356367 ATTTTCAATTTCCGTTTTTCAATTTTTGCCTTTC-AA
130 ATTTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAA
87356403 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* *
87356468 TGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTTGAGGTA
66 TGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTTGAGGTA
*
87356533 TTTTCAATTTCCATTTTTCAATTTCTGCATTTCAAAAAAAAA
131 TTTTCAATTTCCGTTTTTCAATTTCTGCATTTC------AAA
*
87356575 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * * * ** * *
87356640 TGTTTTC--AAAATTCAACTCATATTGTGAGAAATGAGTTAAGCCTCAAG--ACACGTTGAGGTA
66 TGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTTGAGGTA
*
87356701 TTTTCAATTTCTGTTTT
131 TTTTCAATTTCCGTTTT
87356718 CAAAAAATCA
Statistics
Matches: 278, Mismatches: 28, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
164 29 0.10
165 114 0.41
166 2 0.01
168 28 0.10
170 33 0.12
172 72 0.26
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (166 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTTGAGGTA
TTTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAA
Found at i:87356658 original size:72 final size:73
Alignment explanation
Indices: 87356574--87357080 Score: 397
Period size: 79 Copynumber: 6.5 Consensus size: 73
87356564 TCAAAAAAAA
*
87356574 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
87356639 CTGTTTTC
66 CTGTTTTC
* * ** * ** *
87356647 -AAAATTCAACTCATATTGTGAGAAATGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
87356711 CTGTTTTC
66 CTGTTTTC
* * * ** *
87356719 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
87356784 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
87356795 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
87356860 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
87356874 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCA
**
87356938 AAATCTGTTTTTC
62 ATTTCTG-TTTTC
* * **
87356951 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGA
*
87357016 GCTATTTTCAATTTCTGTTTTTTTTTC
52 GGTATTTTCAATTTCTG-----TTTTC
87357043 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
87357081 TTTTTAATTT
Statistics
Matches: 346, Mismatches: 55, Indels: 57
0.76 0.12 0.12
Matches are distributed among these distances:
72 63 0.18
73 32 0.09
75 21 0.06
76 4 0.01
77 57 0.16
78 5 0.01
79 64 0.18
80 1 0.00
81 5 0.01
82 29 0.08
86 2 0.01
88 54 0.16
89 1 0.00
91 2 0.01
92 6 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:87356730 original size:408 final size:387
Alignment explanation
Indices: 87356192--87357036 Score: 964
Period size: 408 Copynumber: 2.1 Consensus size: 387
87356182 TCTGTTCAAA
**
87356192 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTG
1 TGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTG
* *
87356257 CGAGAAATGAGTTGGCCTCAAGACATGCTGAGATATTTTCAATTTTGTTTGTCAAAAAAATCAAC
66 CGAGAAATGAGTTAGCCTCAAGACACGCTGAGATATTTTCAATTTTGTTTGTCAAAAAAATCAAC
* * * *
87356322 TCGTATTGCGAGTGGCGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCAATTTCCGTTTTT
131 TCATATTGCGAGAGGCGAGTTGACCCT-AGGCTCACACGCCGAGCTATTTTCAATTT-C-----T
* *
87356386 CAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACACGC
189 --A----T--CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACAC
* * **
87356450 TGAGGTA-ATTTCAATTTCT-GTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCC
246 TGAGGTATATTTCAATTTATAGTTGTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCC
* ** *
87356513 TCAGATCACACGTTGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCATTTCAAAAAAAAAAAA
311 TCAGATCACACGTCGAGGTATTTTCAAAATCCATTTTTCAAATTCTG-ATTTC---------AAA
*
87356578 AATCAACTCATATTGCGAGAGG
366 AATCAACTCATATTGCGAGAAG
87356600 TGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTG
1 TGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTG
* * *
87356665 TGAGAAATGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTT-TC-AAAAAATCA
66 CGAGAAATGAGTT-AGCCTCAAGACACGCTGAGATATTTTCAATTT-TGTTTGTCAAAAAAATCA
* * * ** *
87356728 ACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAATTTCTATCTT
129 ACTCATATTGCGAGAGGCGAGTTGACCCTAGGCTCACACGCCGAGCTATTTTCAATTTCTATCTT
* *
87356793 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTT
194 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-CACACACTGAGGTA-TATT
* * * * * * *
87356858 TCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACAT
257 TCAATTTATAGTTGTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
** *
87356923 GTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAA
322 GTCGAGGTATTTTCAAAATCCATTTTTCAAATTCTGATTTCAAAAATCAACTCATATTGCGAGAA
87356988 G
387 G
* ** * *
87356989 TGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTT
1 TGAGTTGAGCCTCGGGACAC--GCTGAGGTAATTTCAATTTCTGTTTT
87357037 TTTTTCAAAA
Statistics
Matches: 382, Mismatches: 45, Indels: 37
0.82 0.10 0.08
Matches are distributed among these distances:
389 41 0.11
391 24 0.06
394 46 0.12
396 13 0.03
398 14 0.04
399 75 0.20
400 1 0.00
402 1 0.00
407 3 0.01
408 129 0.34
409 30 0.08
410 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (387 bp):
TGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTG
CGAGAAATGAGTTAGCCTCAAGACACGCTGAGATATTTTCAATTTTGTTTGTCAAAAAAATCAAC
TCATATTGCGAGAGGCGAGTTGACCCTAGGCTCACACGCCGAGCTATTTTCAATTTCTATCTTTC
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACACTGAGGTATATTTCAA
TTTATAGTTGTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCG
AGGTATTTTCAAAATCCATTTTTCAAATTCTGATTTCAAAAATCAACTCATATTGCGAGAAG
Found at i:87356897 original size:79 final size:76
Alignment explanation
Indices: 87356573--87357080 Score: 411
Period size: 72 Copynumber: 6.5 Consensus size: 76
87356563 TTCAAAAAAA
** *
87356573 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
87356636 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * * *
87356647 --AAAATTCAACTCATATTGTGAGAAATGAGTTAAGCCTCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
87356708 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
87356719 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
87356783 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
87356795 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
87356860 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
87356874 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
**
87356938 AAATCTGTTTTTC
65 ATTTCTG-TTTTC
* ** * **
87356951 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
87357016 GCTATTTTCAATTTCTGTTTTTTTTTC
55 GGTATTTTCAATTTCTG-----TTTTC
87357043 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
87357081 TTTTTAATTT
Statistics
Matches: 348, Mismatches: 57, Indels: 50
0.76 0.13 0.11
Matches are distributed among these distances:
72 63 0.18
73 30 0.09
75 22 0.06
76 4 0.01
77 61 0.18
78 3 0.01
79 63 0.18
80 1 0.00
81 5 0.01
82 29 0.08
88 58 0.17
89 1 0.00
91 2 0.01
92 6 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:87356951 original size:14 final size:13
Alignment explanation
Indices: 87356932--87356967 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
87356922 TGTCGAGGTA
87356932 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
87356945 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
87356959 TTTTCAAAA
1 TTTTCAAAA
87356968 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:87357025 original size:88 final size:88
Alignment explanation
Indices: 87356876--87357037 Score: 227
Period size: 88 Copynumber: 1.8 Consensus size: 88
87356866 TATTTTTCAA
* * * *
87356876 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
87356941 TCTGTTTTTCAAATTCTGTTTTC
66 TCTGTTTTTCAAATTCTGTTTTC
* * * *
87356964 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
87357028 TTCTGTTTTT
65 ATCTGTTTTT
87357038 TTTTCAAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 1 0.02
88 63 0.98
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTGTTTTTCAAATTCTGTTTTC
Found at i:87357098 original size:30 final size:30
Alignment explanation
Indices: 87357062--87357123 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
87357052 CAACTCATAT
87357062 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
87357092 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
87357122 TG
1 TG
87357124 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:87357224 original size:254 final size:248
Alignment explanation
Indices: 87356713--87357291 Score: 753
Period size: 254 Copynumber: 2.3 Consensus size: 248
87356703 TTCAATTTCT
* * *
87356713 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
87356778 TTCAATTTC----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
66 TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
* *
87356839 CACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGA
131 CACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGA
* ** * * * **
87356904 GTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCT
195 GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
* *
87356958 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
87357022 TTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
66 TTCAATTTCTGTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCA
* * * * * * *
87357087 -ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGC
128 GA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGC
*
87357149 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
87357212 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
87357276 TTCAATTTTTGTTTTT
66 TTCAATTTCTGTTTTT
87357292 AATGTCTGTT
Statistics
Matches: 290, Mismatches: 29, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
248 13 0.04
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 5 0.02
254 145 0.50
255 5 0.02
256 13 0.04
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (248 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
CACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAG
TTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
Found at i:87357937 original size:16 final size:16
Alignment explanation
Indices: 87357916--87358000 Score: 67
Period size: 16 Copynumber: 5.7 Consensus size: 16
87357906 CCATTAAGCC
87357916 CCCAAAAAAAACCTAA
1 CCCAAAAAAAACCTAA
*
87357932 CCCAAAAAAAAAC-AA
1 CCCAAAAAAAACCTAA
** *
87357947 -AGAAAAAAAA--GAA
1 CCCAAAAAAAACCTAA
*
87357960 ---AAAGAAAAACCTAC
1 CCCAAA-AAAAACCTAA
87357974 CCCAAAAAAAACCTAA
1 CCCAAAAAAAACCTAA
87357990 CCCAAAAAAAA
1 CCCAAAAAAAA
87358001 AAAGAAGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
11 3 0.05
12 5 0.09
13 2 0.04
14 9 0.16
15 2 0.04
16 32 0.57
17 3 0.05
ACGTcount: A:0.69, C:0.24, G:0.04, T:0.04
Consensus pattern (16 bp):
CCCAAAAAAAACCTAA
Found at i:87357953 original size:15 final size:15
Alignment explanation
Indices: 87357935--87357968 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
87357925 AACCTAACCC
*
87357935 AAAAAAAA-ACAAAG
1 AAAAAAAAGAAAAAG
87357949 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
87357964 AAAAA
1 AAAAA
87357969 CCTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:87357997 original size:42 final size:41
Alignment explanation
Indices: 87357922--87358012 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 41
87357912 AGCCCCCAAA
*
87357922 AAAAACCTAACCCAAAAAAAAACAAAGAAAAAAAAGAAAAAG
1 AAAAACCTAACCCAAAAAAAAACAAACAAAAAAAA-AAAAAG
* * *
87357964 AAAAACCTACCCCAAAAAAAACCTAACCCAAAAAAAAAAAGAAG
1 AAAAACCTAACCCAAAAAAAAAC-AA-ACAAAAAAAAAAA-AAG
87358008 AAAAA
1 AAAAA
87358013 AGAAAAACCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 21 0.50
43 5 0.12
44 16 0.38
ACGTcount: A:0.73, C:0.19, G:0.05, T:0.03
Consensus pattern (41 bp):
AAAAACCTAACCCAAAAAAAAACAAACAAAAAAAAAAAAAG
Found at i:87358001 original size:17 final size:16
Alignment explanation
Indices: 87357959--87358001 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
87357949 AAAAAAAAGA
87357959 AAAAGAAAAACCTACCC
1 AAAA-AAAAACCTACCC
*
87357976 CAAAAAAAACCTAACCC
1 AAAAAAAAACCT-ACCC
87357993 AAAAAAAAA
1 AAAAAAAAA
87358002 AAGAAGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.67, C:0.26, G:0.02, T:0.05
Consensus pattern (16 bp):
AAAAAAAAACCTACCC
Found at i:87360184 original size:27 final size:28
Alignment explanation
Indices: 87360132--87360184 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
87360122 ATATTGTAAG
* *
87360132 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAACACTGATAT
*
87360160 GGGCTAAGGCCTAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAACACTGAT
87360185 TTCTGAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAACACTGATAT
Found at i:87361212 original size:17 final size:17
Alignment explanation
Indices: 87361190--87361226 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
87361180 TGTGAAAGTG
87361190 ATTTATCAAACAATAAT
1 ATTTATCAAACAATAAT
87361207 ATTTATCAAACAATAAT
1 ATTTATCAAACAATAAT
87361224 ATT
1 ATT
87361227 CTAACTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (17 bp):
ATTTATCAAACAATAAT
Found at i:87365133 original size:3 final size:3
Alignment explanation
Indices: 87365125--87365186 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
87365115 TATTTGTTCT
87365125 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
87365173 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
87365187 TCTATGATTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:87366423 original size:26 final size:26
Alignment explanation
Indices: 87366394--87366501 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
87366384 TGGTACAAAT
87366394 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87366420 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87366446 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87366472 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87366498 TGAT
1 TGAT
87366502 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87368194 original size:27 final size:27
Alignment explanation
Indices: 87368097--87368201 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
87368087 AGGAAGCGTC
* *
87368097 CTGGTGGCTATACCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
87368124 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
87368151 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
87368178 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
87368202 GCAGCCTCGC
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 9 0.13
27 60 0.86
28 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:87370828 original size:2 final size:2
Alignment explanation
Indices: 87370823--87370870 Score: 64
Period size: 2 Copynumber: 24.5 Consensus size: 2
87370813 TTGAATTAAC
*
87370823 AT AT AT -T AT A- AT AT AT GAA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
87370864 AT AT AT A
1 AT AT AT A
87370871 ACCAGATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 38 0.93
3 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:87374305 original size:26 final size:26
Alignment explanation
Indices: 87374268--87374403 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
87374258 TGATACAAAT
* *
87374268 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87374294 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
87374320 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87374346 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87374372 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87374398 TGATAA
1 TGATAA
87374404 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:87378086 original size:1 final size:1
Alignment explanation
Indices: 87378082--87378111 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
87378072 ACATTTATAG
*
87378082 TTTTTTTGTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
87378112 GCGGTTTGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:87379611 original size:25 final size:24
Alignment explanation
Indices: 87379582--87379666 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 24
87379572 AAAAAAAATT
87379582 GTTTTGTTATTATTATTTATTTTAA
1 GTTTT-TTATTATTATTTATTTTAA
*
87379607 GTTTTTTTTCCTATATTATTTATTTTAA
1 G--TTTTTT-AT-TATTATTTATTTTAA
* * *
87379635 ATCGTTTTATTATTATTTATGTTAA
1 GT-TTTTTATTATTATTTATTTTAA
*
87379660 TTTTTTT
1 GTTTTTT
87379667 CGTATTGTGT
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
24 4 0.08
25 16 0.33
26 4 0.08
27 9 0.19
28 15 0.31
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.68
Consensus pattern (24 bp):
GTTTTTTATTATTATTTATTTTAA
Found at i:87379651 original size:28 final size:27
Alignment explanation
Indices: 87379581--87379651 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 27
87379571 TAAAAAAAAT
* *
87379581 TGTTTTGTTATTATTATTTATTTTAAG
1 TGTTTTATTATTATTATTTATTTTAAA
* *
87379608 T-TTTTTTTCCTATATTATTTATTTTAAA
1 TGTTTTATT-AT-TATTATTTATTTTAAA
87379636 TCGTTTTATTATTATT
1 T-GTTTTATTATTATT
87379652 TATGTTAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
26 6 0.17
27 2 0.06
28 20 0.57
29 1 0.03
30 6 0.17
ACGTcount: A:0.23, C:0.04, G:0.06, T:0.68
Consensus pattern (27 bp):
TGTTTTATTATTATTATTTATTTTAAA
Found at i:87379802 original size:26 final size:26
Alignment explanation
Indices: 87379773--87379830 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
87379763 ATATATTTTT
87379773 TTATTTA-TTCAAATCTCTTTTACATA
1 TTATTTATTTCAAA-CTCTTTTACATA
* * *
87379799 TTATTTATTTTAAACTCTTTTATATG
1 TTATTTATTTCAAACTCTTTTACATA
87379825 TTATTT
1 TTATTT
87379831 TAAAGTGTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.28, C:0.10, G:0.02, T:0.60
Consensus pattern (26 bp):
TTATTTATTTCAAACTCTTTTACATA
Found at i:87379843 original size:22 final size:22
Alignment explanation
Indices: 87379803--87379845 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
87379793 TACATATTAT
*
87379803 TTATTTTAAACTCTTTTATATG
1 TTATTTTAAACTCTCTTATATG
* *
87379825 TTATTTTAAAGTGTCTTATAT
1 TTATTTTAAACTCTCTTATAT
87379846 TTTTATTTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.58
Consensus pattern (22 bp):
TTATTTTAAACTCTCTTATATG
Found at i:87379874 original size:26 final size:26
Alignment explanation
Indices: 87379843--87379899 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
87379833 AAGTGTCTTA
* **
87379843 TATTTTTATTTACTTTGTATATTATT
1 TATTTTAATTTACTTTACATATTATT
**
87379869 TATTTTAATTTGTTTTACATATTATT
1 TATTTTAATTTACTTTACATATTATT
87379895 TATTT
1 TATTT
87379900 GAGATTGCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (26 bp):
TATTTTAATTTACTTTACATATTATT
Found at i:87379880 original size:21 final size:19
Alignment explanation
Indices: 87379841--87379881 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
87379831 TAAAGTGTCT
*
87379841 TATATTTTTATTTACTTTG
1 TATATTTTTATTTAATTTG
87379860 TATATTATTTATTTTAATTTG
1 TATATT-TTTA-TTTAATTTG
87379881 T
1 T
87379882 TTTACATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 4 0.21
21 9 0.47
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (19 bp):
TATATTTTTATTTAATTTG
Found at i:87380928 original size:24 final size:21
Alignment explanation
Indices: 87380900--87380950 Score: 57
Period size: 24 Copynumber: 2.3 Consensus size: 21
87380890 TTATTATAGT
*
87380900 AATTTAGATTAATAGGAATTATCA
1 AATTTACATTAA-AGG-ATTAT-A
*
87380924 AATTTACATTTAAGGATTATA
1 AATTTACATTAAAGGATTATA
87380945 AATTTA
1 AATTTA
87380951 TTTAATTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.28
22 5 0.20
23 3 0.12
24 10 0.40
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (21 bp):
AATTTACATTAAAGGATTATA
Found at i:87381904 original size:44 final size:43
Alignment explanation
Indices: 87381838--87381977 Score: 192
Period size: 42 Copynumber: 3.3 Consensus size: 43
87381828 CGCTATATGT
** *
87381838 AACGCCGCTAAAGTTCACGACTTTTAGCGGCGCTTTTTTAAAAA
1 AACGCCGCTAAAGAACAGGACTTTTAGCGGCGCTTTTTT-AAAA
*
87381882 AACGCCGCTAAAGAACAGGACTTTTAGCGGCAC-TTTTTAAAA
1 AACGCCGCTAAAGAACAGGACTTTTAGCGGCGCTTTTTTAAAA
* * * *
87381924 AACGCCGCTAAAGACCGGGACCTTTAGCGGCGCTTTTATAAAA
1 AACGCCGCTAAAGAACAGGACTTTTAGCGGCGCTTTTTTAAAA
87381967 AACGCCGCTAA
1 AACGCCGCTAA
87381978 TTTGCCCAAT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
42 33 0.38
43 24 0.28
44 29 0.34
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (43 bp):
AACGCCGCTAAAGAACAGGACTTTTAGCGGCGCTTTTTTAAAA
Found at i:87382295 original size:21 final size:21
Alignment explanation
Indices: 87382271--87382318 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
87382261 TTCTATTCTG
*
87382271 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
87382292 CTCCGCCTCCCGCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
87382313 CTCCGC
1 CTCCGC
87382319 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.58, G:0.21, T:0.21
Consensus pattern (21 bp):
CTCCGCCTCCCGCGCTGCTGC
Found at i:87388614 original size:241 final size:241
Alignment explanation
Indices: 87388185--87388671 Score: 902
Period size: 241 Copynumber: 2.0 Consensus size: 241
87388175 TTAAGGTTAT
*
87388185 ATAAATATTTAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAACAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAACAT
*
87388250 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
87388315 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
* *
87388380 GGTGAGCTATTGTTGTAATTTTAATGGACAAGCAAGCCACATGGTA
196 GGTCAGCTATTATTGTAATTTTAATGGACAAGCAAGCCACATGGTA
*
87388426 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAACAT
87388491 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
*
87388556 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATCAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
* *
87388621 GGTCAGCTATTATTGTAATTTTAATGGACAAGCAAGCTAGATGGTA
196 GGTCAGCTATTATTGTAATTTTAATGGACAAGCAAGCCACATGGTA
87388667 ATAAA
1 ATAAA
87388672 ATTAATTCAT
Statistics
Matches: 238, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 238 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAACAT
TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTATTGTAATTTTAATGGACAAGCAAGCCACATGGTA
Found at i:87390107 original size:17 final size:17
Alignment explanation
Indices: 87390081--87390124 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
87390071 CGTTCAAGCA
87390081 AATATAAAAACTTGATC
1 AATATAAAAACTTGATC
*
87390098 AATATCAAAACTTGATC
1 AATATAAAAACTTGATC
87390115 AAATATAAAA
1 -AATATAAAA
87390125 TTTTAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (17 bp):
AATATAAAAACTTGATC
Done.