Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 291 of 335
Found at i:87392842 original size:46 final size:46
Alignment explanation
Indices: 87392792--87392967 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
87392782 TGGTTGAGCA
*
87392792 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
87392838 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
87392885 TCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
87392931 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87392968 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 34 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:87392948 original size:93 final size:93
Alignment explanation
Indices: 87392789--87392959 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
87392779 GGATGGTTGA
* * *
87392789 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
87392854 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
87392882 GCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
87392947 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
87392960 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:87394392 original size:43 final size:44
Alignment explanation
Indices: 87394344--87394437 Score: 138
Period size: 44 Copynumber: 2.2 Consensus size: 44
87394334 GGGAACAGAT
*
87394344 TTAGGGAAAAAAGTATGGGG-AAAG-GGAGGATTTGGGGAAAATG
1 TTAGGGAAAAAACTATGGGGAAAAGAGG-GGATTTGGGGAAAATG
**
87394387 TTAGGGAAATGACTATGGGGAAAAGAGGGGATTTGGGGAAAATG
1 TTAGGGAAAAAACTATGGGGAAAAGAGGGGATTTGGGGAAAATG
87394431 TTAGGGA
1 TTAGGGA
87394438 TTTTGAGTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 17 0.37
44 27 0.59
45 2 0.04
ACGTcount: A:0.37, C:0.01, G:0.41, T:0.20
Consensus pattern (44 bp):
TTAGGGAAAAAACTATGGGGAAAAGAGGGGATTTGGGGAAAATG
Found at i:87395462 original size:2 final size:2
Alignment explanation
Indices: 87395455--87395480 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
87395445 TAAACCCTAA
87395455 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
87395481 TACAAGGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87395677 original size:14 final size:14
Alignment explanation
Indices: 87395659--87395751 Score: 68
Period size: 14 Copynumber: 6.8 Consensus size: 14
87395649 TAGTTAACTT
*
87395659 TTAAACCTTAAACC
1 TTAAACCATAAACC
* * *
87395673 CTAAACCATATATC
1 TTAAACCATAAACC
*
87395687 TTAAACCAT--A-G
1 TTAAACCATAAACC
87395698 TT-AACTCATAAACC
1 TTAAAC-CATAAACC
* *
87395712 TTAAACCCATATATC
1 TTAAA-CCATAAACC
87395727 TTAAACCATAAACC
1 TTAAACCATAAACC
*
87395741 TTAAACTATAA
1 TTAAACCATAA
87395752 TGATAATTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
10 3 0.05
11 5 0.08
12 1 0.02
13 1 0.02
14 37 0.61
15 13 0.21
16 1 0.02
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (14 bp):
TTAAACCATAAACC
Found at i:87401696 original size:24 final size:24
Alignment explanation
Indices: 87401665--87401716 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
87401655 TTTTAGTGTC
87401665 TTAAAAACCATATATCTTGTTAAG
1 TTAAAAACCATATATCTTGTTAAG
87401689 TTAAAAACCATATATCTTGTTAAG
1 TTAAAAACCATATATCTTGTTAAG
87401713 TTAA
1 TTAA
87401717 CAAAGTGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (24 bp):
TTAAAAACCATATATCTTGTTAAG
Found at i:87404285 original size:28 final size:28
Alignment explanation
Indices: 87404239--87404307 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
87404229 TTTAAAACCC
*
87404239 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
87404266 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
87404294 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
87404308 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:87405714 original size:20 final size:20
Alignment explanation
Indices: 87405691--87405728 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87405681 CACATCCAAA
*
87405691 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
87405711 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
87405729 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:87407935 original size:22 final size:23
Alignment explanation
Indices: 87407907--87407950 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
87407897 CTGAAAATTT
87407907 TTTAGA-TAGTGGGCT-TGGGTTG
1 TTTAGATTAGTGGG-TATGGGTTG
87407929 TTTAGATTAGTGGGTATGGGTT
1 TTTAGATTAGTGGGTATGGGTT
87407951 AGCGGGCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.16, C:0.02, G:0.39, T:0.43
Consensus pattern (23 bp):
TTTAGATTAGTGGGTATGGGTTG
Found at i:87408893 original size:71 final size:71
Alignment explanation
Indices: 87408647--87408986 Score: 313
Period size: 71 Copynumber: 4.6 Consensus size: 71
87408637 ATTAAAAAGA
* * * * * *
87408647 CTCAACTCACCTCTCGCAATATGAATTGAATTTTGAAATAGAATTTGAAAATACCTTAGCGTGCC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAGAAATTGAAATTACCTCAGCGTGCC
* *
87408712 GCAAGG
66 CCGAGG
* * *
87408718 CTCAACTCACCCCTCGCAATATGAGTTGATTTTAGATTTAACAGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA---AACAGAAATTGAAATTACCTCAGCGT
87408783 GCCCCGAGG
63 GCCCCGAGG
* * * * * *
87408792 TTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAGAAATTGAAATTACCTCAGCGTGCC
**
87408857 TTGAGG
66 CCGAGG
* *
87408863 CTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAAATGAAAAGCAGAAATTGAAAATA
1 CTCAACTCACCTCTCGCAATATGAGTTGA--TT-TT-------TG-AAA-CAGAAATTGAAATTA
* *
87408928 CCTCAGCGTACCCTGAGG
54 CCTCAGCGTGCCCCGAGG
* *
87408946 CTCAACTCACTTCTCGCGATATG-GTTGATTTTTGAAACAGA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAGA
87408987 GAAATTAAAA
Statistics
Matches: 219, Mismatches: 35, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
70 4 0.02
71 89 0.41
72 2 0.01
73 2 0.01
74 61 0.28
79 2 0.01
80 2 0.01
81 2 0.01
82 7 0.03
83 48 0.22
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (71 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAGAAATTGAAATTACCTCAGCGTGCC
CCGAGG
Found at i:87409093 original size:271 final size:281
Alignment explanation
Indices: 87408772--87409395 Score: 1011
Period size: 277 Copynumber: 2.2 Consensus size: 281
87408762 GAATTGAAAT
87408772 TACCTCAGC--GTGCCCCGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAA
1 TACCTCAGCGTGTGCCCCGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAA
87408835 ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTG
66 ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTG
87408900 GAAAA-ATG-AAAAGCAGAAATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGC
131 GAAAACATGAAAAAGCAGAAATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGC
*
87408963 GATATGGTTGATTTTTGAAACAGAGAAATTAAAAGCTT-ACTCACCTCTCGCAATATGAGTCAA-
196 GATATGGTTGATTTTTGAAACAGAGAAATTAAAAGCTTAACTCACCTCTCGCAAGATGAGTCAAT
*
87409026 TTT-AAAACATAAACTAAGAA
261 TTTCAAAACATAAACTAAAAA
87409046 TACC-C-G-GTGTGCCCCGAGGTTCAACTCA-TTCTCGCAATAT-AGTTGATTTTTGAAACATAA
1 TACCTCAGCGTGTGCCCCGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAA
87409106 ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTG
66 ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTG
87409171 GAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTC
131 GAAAACATG----AAAAAGCAGAAATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTC
*
87409236 TCGCGATATGGTTGATTTTTGAAACAGAGAAATTAAAAGCTTAACTCACCTTTCGCAAGATGAGT
192 TCGCGATATGGTTGATTTTTGAAACAGAGAAATTAAAAGCTTAACTCACCTCTCGCAAGATGAGT
* *
87409301 CAATTTTTCTAAACGTAAACTAAAAA
257 CAA-TTTTCAAAACATAAACTAAAAA
* * * * * *
87409327 TACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACATG
1 TACCTCAGCGTGTGCCCCGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTG-AAACATA
87409392 AATT
65 AATT
87409396 AAAGATACCT
Statistics
Matches: 323, Mismatches: 9, Indels: 23
0.91 0.03 0.06
Matches are distributed among these distances:
271 90 0.28
272 16 0.05
273 21 0.07
274 4 0.01
277 93 0.29
278 23 0.07
280 3 0.01
281 18 0.06
282 1 0.00
283 1 0.00
284 19 0.06
285 12 0.04
286 12 0.04
287 10 0.03
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (281 bp):
TACCTCAGCGTGTGCCCCGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAA
ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTG
GAAAACATGAAAAAGCAGAAATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGC
GATATGGTTGATTTTTGAAACAGAGAAATTAAAAGCTTAACTCACCTCTCGCAAGATGAGTCAAT
TTTCAAAACATAAACTAAAAA
Found at i:87422572 original size:6 final size:6
Alignment explanation
Indices: 87422561--87422591 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
87422551 ACCGGAGGTC
87422561 CGCCGG CGCCGG CGCCGG CGCCGG CGCCGG C
1 CGCCGG CGCCGG CGCCGG CGCCGG CGCCGG C
87422592 CACTGCACGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.48, T:0.00
Consensus pattern (6 bp):
CGCCGG
Found at i:87422648 original size:19 final size:18
Alignment explanation
Indices: 87422624--87422669 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
87422614 GGTAAAAATC
*
87422624 TTATTTTTTTATTCTTTTT
1 TTATTTTTTTATT-TTATT
*
87422643 TTATTTTGTTATTTTATT
1 TTATTTTTTTATTTTATT
*
87422661 GTATTTTTT
1 TTATTTTTT
87422670 GATAAATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.80
Consensus pattern (18 bp):
TTATTTTTTTATTTTATT
Found at i:87423165 original size:22 final size:23
Alignment explanation
Indices: 87423137--87423180 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
87423127 GCTGAAATTT
87423137 TTTAGATT-GTGGGCT-TGGGTTG
1 TTTAGATTAGTGGG-TATGGGTTG
87423159 TTTAGATTAGTGGGTATGGGTT
1 TTTAGATTAGTGGGTATGGGTT
87423181 AGCGGGCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.14, C:0.02, G:0.39, T:0.45
Consensus pattern (23 bp):
TTTAGATTAGTGGGTATGGGTTG
Found at i:87425428 original size:3 final size:3
Alignment explanation
Indices: 87425393--87425500 Score: 60
Period size: 3 Copynumber: 35.0 Consensus size: 3
87425383 CTTCCTTTAC
* * * *
87425393 TAT TAT TTT TAT T-T TTT TAT TTT TAT CATT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * * *
87425438 TAT TAT TAT CAT TGA- TAT GTCGT TAT TAT T-T TAT TGT CTCAT CAT
1 TAT TAT TAT TAT T-AT TAT -T-AT TAT TAT TAT TAT TAT -T-AT TAT
*
87425483 TAT TGT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT
87425501 CATCTTGTTT
Statistics
Matches: 79, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
2 5 0.06
3 66 0.84
4 6 0.08
5 2 0.03
ACGTcount: A:0.25, C:0.06, G:0.05, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:87425796 original size:3 final size:3
Alignment explanation
Indices: 87425790--87425829 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
87425780 TTAATTATAT
87425790 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
87425830 TATTGAACAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:87428031 original size:15 final size:15
Alignment explanation
Indices: 87428011--87428057 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
87428001 TAATATATAT
87428011 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
87428026 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
*
87428041 TTCAATTAATATAAA
1 TTCAATCAATATAAA
87428056 TT
1 TT
87428058 TGATAAATTC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:87429269 original size:4 final size:4
Alignment explanation
Indices: 87429260--87429290 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
87429250 CATTTTCTCC
87429260 CTTT CTTT CTTT CTTT CTTT CCTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CT
87429291 CCCCTGTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
CTTT
Found at i:87429368 original size:13 final size:12
Alignment explanation
Indices: 87429346--87429379 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
87429336 CTTTTATTTC
87429346 ATTTATTACTTT
1 ATTTATTACTTT
87429358 ATTTCATTACTTT
1 ATTT-ATTACTTT
87429371 ATTTTATTA
1 A-TTTATTA
87429380 TTAAACTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 13 0.65
14 3 0.15
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (12 bp):
ATTTATTACTTT
Found at i:87431678 original size:25 final size:27
Alignment explanation
Indices: 87431641--87431693 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
87431631 TCAAACATGC
87431641 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
87431667 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
87431693 A
1 A
87431694 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:87433217 original size:32 final size:32
Alignment explanation
Indices: 87433176--87433272 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
87433166 AATGCTTATC
*
87433176 ATGCCCATCATCCATTAACTATTAAAATGTTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
87433208 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
87433240 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
87433272 A
1 A
87433273 AATGCATACA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:87438980 original size:32 final size:32
Alignment explanation
Indices: 87438939--87439035 Score: 167
Period size: 32 Copynumber: 3.0 Consensus size: 32
87438929 AATGCTTATC
*
87438939 ATGCCCATCATCCATTAACTATTAAAATGTTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
* *
87438971 ATGCCCATCATTCATTAACTATTAAAACGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
87439003 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
87439035 A
1 A
87439036 AATGCATACA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:87440473 original size:3 final size:3
Alignment explanation
Indices: 87440465--87440540 Score: 50
Period size: 3 Copynumber: 25.7 Consensus size: 3
87440455 GAGGAATACT
* * * * *
87440465 ATA ATA ATA AAA AT- GTA ATA ATA ATA ATA ATA ATA TTA ATA TTA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
87440512 ATC A-A ATC ATA ATA TATA A-A ATAA ATA AT
1 ATA ATA ATA ATA ATA -ATA ATA AT-A ATA AT
87440541 GTAATCTTAA
Statistics
Matches: 55, Mismatches: 13, Indels: 10
0.71 0.17 0.13
Matches are distributed among these distances:
2 4 0.07
3 45 0.82
4 6 0.11
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:87441789 original size:14 final size:14
Alignment explanation
Indices: 87441757--87441790 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
87441747 AAAGATTACC
87441757 TTTTTTCTTTTCGA
1 TTTTTTCTTTTCGA
* *
87441771 ATTTTTCTTTTCTA
1 TTTTTTCTTTTCGA
87441785 TTTTTT
1 TTTTTT
87441791 ATTGCTTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.12, G:0.03, T:0.76
Consensus pattern (14 bp):
TTTTTTCTTTTCGA
Found at i:87443836 original size:15 final size:15
Alignment explanation
Indices: 87443816--87443846 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
87443806 AATCTATTGG
87443816 CTTATAAATGAAAAC
1 CTTATAAATGAAAAC
87443831 CTTATAAATGAAAAC
1 CTTATAAATGAAAAC
87443846 C
1 C
87443847 AATTCTCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.16, G:0.06, T:0.26
Consensus pattern (15 bp):
CTTATAAATGAAAAC
Found at i:87454636 original size:41 final size:41
Alignment explanation
Indices: 87454591--87454673 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
87454581 GTGCCGCCCC
87454591 TACGTCTCAATTTTCTACCATACCCTTCTTCTTTCTTACAT
1 TACGTCTCAATTTTCTACCATACCCTTCTTCTTTCTTACAT
* *
87454632 TACGTCTCAATTTTCTCCCATACTCTTCTTCTTTCTTACAT
1 TACGTCTCAATTTTCTACCATACCCTTCTTCTTTCTTACAT
87454673 T
1 T
87454674 GTTGTCGCCG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.18, C:0.31, G:0.02, T:0.48
Consensus pattern (41 bp):
TACGTCTCAATTTTCTACCATACCCTTCTTCTTTCTTACAT
Found at i:87455881 original size:15 final size:15
Alignment explanation
Indices: 87455863--87455895 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
87455853 TTTGTATGTC
87455863 TATACATTGTTTACA
1 TATACATTGTTTACA
87455878 TATACATTGTTTACA
1 TATACATTGTTTACA
87455893 TAT
1 TAT
87455896 GTTTAGACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (15 bp):
TATACATTGTTTACA
Found at i:87458918 original size:25 final size:27
Alignment explanation
Indices: 87458881--87458933 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
87458871 TCAAACATGC
87458881 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
87458907 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
87458933 A
1 A
87458934 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:87460454 original size:32 final size:32
Alignment explanation
Indices: 87460417--87460513 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
87460407 AATGCTTATC
87460417 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
87460449 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
87460481 ATGCCCATCATCTATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
87460513 A
1 A
87460514 AATGCATACA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 64 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:87460533 original size:32 final size:31
Alignment explanation
Indices: 87460421--87460534 Score: 124
Period size: 32 Copynumber: 3.6 Consensus size: 31
87460411 CTTATCATGC
* *
87460421 CCATCATCCATTAACTATTAAAATGCTAATG
1 CCATCATCTATCAACTATTAAAATGCTAATG
* *
87460452 CCCATCATCCATTAACTATTAAAATGCTAATG
1 -CCATCATCTATCAACTATTAAAATGCTAATG
*
87460484 CCCATCATCTATTAACTATTAAAATGCTAAAATG
1 -CCATCATCTATCAACTATTAAAATGCT--AATG
87460518 -CATACAT-TATCAACTAT
1 CCAT-CATCTATCAACTAT
87460535 CCATCACCTT
Statistics
Matches: 77, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
32 70 0.91
33 3 0.04
34 4 0.05
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.32
Consensus pattern (31 bp):
CCATCATCTATCAACTATTAAAATGCTAATG
Found at i:87462030 original size:14 final size:14
Alignment explanation
Indices: 87462011--87462049 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
87462001 CGGTAAACCC
*
87462011 TAAACCCTTAATCT
1 TAAACCCTAAATCT
*
87462025 TAAACCCTAAATTT
1 TAAACCCTAAATCT
87462039 TAAACCCTAAA
1 TAAACCCTAAA
87462050 CCAAAGTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAACCCTAAATCT
Found at i:87464361 original size:20 final size:20
Alignment explanation
Indices: 87464336--87464392 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
87464326 TATGATAATT
87464336 TTTATAATTTTTTTACGAAA
1 TTTATAATTTTTTTACGAAA
* **
87464356 TTTAT-ATTTCTTTAC-ATT
1 TTTATAATTTTTTTACGAAA
*
87464374 TTGTATAATTTTCTTACGA
1 TT-TATAATTTTTTTACGA
87464393 CTTTATAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.10
19 12 0.41
20 13 0.45
21 1 0.03
ACGTcount: A:0.28, C:0.09, G:0.05, T:0.58
Consensus pattern (20 bp):
TTTATAATTTTTTTACGAAA
Found at i:87464436 original size:28 final size:28
Alignment explanation
Indices: 87464356--87464478 Score: 106
Period size: 29 Copynumber: 4.3 Consensus size: 28
87464346 TTTTACGAAA
* * *
87464356 TTTATATTTCTTTACATTTTGTATAATTT
1 TTTATATTTCTATAAAATTT-TATAATTT
* *
87464385 TCTTACGACTT-TATAAAATTTTATTAATTT
1 T-TTA-TATTTCTATAAAATTTTA-TAATTT
*
87464415 TTTATATTTCTAT-ATATTTTATAATTT
1 TTTATATTTCTATAAAATTTTATAATTT
* *
87464442 TTTATGATTTTTATAAAATTTTACAATTT
1 TTTAT-ATTTCTATAAAATTTTATAATTT
*
87464471 TTTTTATT
1 TTTATATT
87464479 GTTAATACAT
Statistics
Matches: 76, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
27 11 0.14
28 20 0.26
29 25 0.33
30 17 0.22
31 3 0.04
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (28 bp):
TTTATATTTCTATAAAATTTTATAATTT
Found at i:87464453 original size:19 final size:18
Alignment explanation
Indices: 87464333--87464457 Score: 60
Period size: 19 Copynumber: 6.6 Consensus size: 18
87464323 TGGTATGATA
87464333 ATTTTTATAATTTTTTTACG
1 ATTTTTATAA-TTTTTTA-G
** *
87464353 AAATTTAT-ATTTCTTTAC
1 ATTTTTATAATTT-TTTAG
87464371 ATTTTGTATAATTTTCTTACG
1 ATTTT-TATAATTTT-TTA-G
* *
87464392 ACTTTATAAAATTTTATTA-
1 A-TTTTTATAATTTT-TTAG
* *
87464411 ATTTTT-T-ATATTTCTAT
1 ATTTTTATAAT-TTTTTAG
87464428 ATATTTTATAATTTTTTATG
1 AT-TTTTATAATTTTTTA-G
87464448 ATTTTTATAA
1 ATTTTTATAA
87464458 AATTTTACAA
Statistics
Matches: 79, Mismatches: 14, Indels: 25
0.67 0.12 0.21
Matches are distributed among these distances:
16 4 0.05
17 5 0.06
18 14 0.18
19 24 0.30
20 17 0.22
21 12 0.15
22 3 0.04
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (18 bp):
ATTTTTATAATTTTTTAG
Found at i:87464455 original size:57 final size:58
Alignment explanation
Indices: 87464356--87464478 Score: 153
Period size: 57 Copynumber: 2.1 Consensus size: 58
87464346 TTTTACGAAA
* *
87464356 TTTATATTTCTTTACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTATTAATTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTA-CAATTT
* * *
87464415 TTTATATTTCTATATA-TTT-TATAATTTT-TTATGATTTTTATAAAATTTTACAATTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGA-CTTTATAAAATTTTACAATTT
*
87464471 TTTTTATT
1 TTTATATT
87464479 GTTAATACAT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
56 17 0.30
57 23 0.40
58 3 0.05
59 14 0.25
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (58 bp):
TTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTACAATTT
Found at i:87464729 original size:90 final size:89
Alignment explanation
Indices: 87464572--87464796 Score: 298
Period size: 91 Copynumber: 2.5 Consensus size: 89
87464562 TTTAATAAAG
* *
87464572 GTAGGGCCTTAATTGCTTTTCTTTGAAAAATTTAAGGGTCTTTTT-GATGCATTTTGAAAGTTAA
1 GTAGGGGCTTAATTGCTTTT-TTTGAAAAATTTGAGGG-CTTTTTGGATGCATTTTGAAAGTTAA
*
87464636 AGTA-CTAAATTGAGTGC-AAAAAAAA
64 AGTACCCAAA-TGAGTGCAAAAAAAAA
*
87464661 GTAGGGGCTTAATTGCTTTTTTTGAAAATGTTTGAGGGCTTTTTGGTATGCATTTTGAAAG-TAC
1 GTAGGGGCTTAATTGCTTTTTTTGAAAA-ATTTGAGGGCTTTTTGG-ATGCATTTTGAAAGTTA-
87464725 AAGTACCCAAATGAGTGCAAAAAAAAA
63 AAGTACCCAAATGAGTGCAAAAAAAAA
*
87464752 GCAGGGGCTTAATTG-TATTTTTTGAAAAAATTTGAGGGCTTTTTG
1 GTAGGGGCTTAATTGCT-TTTTTTG-AAAAATTTGAGGGCTTTTTG
87464797 CACCCTTAAG
Statistics
Matches: 122, Mismatches: 6, Indels: 14
0.86 0.04 0.10
Matches are distributed among these distances:
88 14 0.11
89 29 0.24
90 27 0.22
91 48 0.39
92 4 0.03
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (89 bp):
GTAGGGGCTTAATTGCTTTTTTTGAAAAATTTGAGGGCTTTTTGGATGCATTTTGAAAGTTAAAG
TACCCAAATGAGTGCAAAAAAAAA
Found at i:87465623 original size:36 final size:36
Alignment explanation
Indices: 87465536--87465624 Score: 99
Period size: 37 Copynumber: 2.4 Consensus size: 36
87465526 TTTCTTAATT
* * *
87465536 TGTAAAAAATAATAAAATTATTAGAAAATTTTAAATAC
1 TGTAAAAAAT-A-AAAATTATTAGAAAATATAAAAGAC
*
87465574 TGAAAAAATATAAAAATTATTAG-AAATCATAAAAGAC
1 TGTAAAAA-ATAAAAATTATTAGAAAAT-ATAAAAGAC
87465611 TGTAAAAAATAAAA
1 TGTAAAAAATAAAA
87465625 TTTTTAAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
36 10 0.23
37 24 0.55
38 8 0.18
39 2 0.05
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (36 bp):
TGTAAAAAATAAAAATTATTAGAAAATATAAAAGAC
Found at i:87467674 original size:25 final size:25
Alignment explanation
Indices: 87467640--87467690 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
87467630 TAACGTAGCG
87467640 TATGTGAGTCTAGCTATACATGCCA
1 TATGTGAGTCTAGCTATACATGCCA
87467665 TATGTGAGTCTAGCTATACATGCCA
1 TATGTGAGTCTAGCTATACATGCCA
87467690 T
1 T
87467691 TAAATAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (25 bp):
TATGTGAGTCTAGCTATACATGCCA
Found at i:87472127 original size:48 final size:48
Alignment explanation
Indices: 87472053--87472265 Score: 248
Period size: 48 Copynumber: 4.4 Consensus size: 48
87472043 AGAATCAACT
* * * * * *
87472053 ATGATATTGGCACTTCAGGTGTGAGTTATATTGAGTTGGCTTTGGGCT
1 ATGATATTGACACTTCGGGTGCGAGCTATATTGAGTTGGCTTCGGGCC
* * *
87472101 ATGATTTTGACACTTCGGGTGCGAGTTATATTGATTTGGCTTCGGGCC
1 ATGATATTGACACTTCGGGTGCGAGCTATATTGAGTTGGCTTCGGGCC
* *
87472149 ATGATATTGACACTTCGGGTGCGAGCTATATTGATTTGTCTTCGGGCC
1 ATGATATTGACACTTCGGGTGCGAGCTATATTGAGTTGGCTTCGGGCC
* ** *
87472197 ATGATATT-AGCACTTCGAGTGCGAGCTGCATTGAGTTGGCTTCGAGCC
1 ATGATATTGA-CACTTCGGGTGCGAGCTATATTGAGTTGGCTTCGGGCC
* * *
87472245 ATGATATGGGCACTTAGGGTG
1 ATGATATTGACACTTCGGGTG
87472266 TGAGACTCCC
Statistics
Matches: 143, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
47 1 0.01
48 142 0.99
ACGTcount: A:0.19, C:0.16, G:0.30, T:0.35
Consensus pattern (48 bp):
ATGATATTGACACTTCGGGTGCGAGCTATATTGAGTTGGCTTCGGGCC
Found at i:87472145 original size:27 final size:27
Alignment explanation
Indices: 87472112--87472194 Score: 70
Period size: 24 Copynumber: 3.3 Consensus size: 27
87472102 TGATTTTGAC
87472112 ACTTCGGGTGCGAGTTATATTGATTTG
1 ACTTCGGGTGCGAGTTATATTGATTTG
* * * *
87472139 GCTTC-GG-GCCA-TGATATTGA---C
1 ACTTCGGGTGCGAGTTATATTGATTTG
*
87472160 ACTTCGGGTGCGAGCTATATTGATTTG
1 ACTTCGGGTGCGAGTTATATTGATTTG
*
87472187 TCTTCGGG
1 ACTTCGGG
87472195 CCATGATATT
Statistics
Matches: 40, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
21 4 0.10
22 2 0.05
23 3 0.08
24 15 0.38
25 3 0.08
26 2 0.05
27 11 0.28
ACGTcount: A:0.17, C:0.17, G:0.30, T:0.36
Consensus pattern (27 bp):
ACTTCGGGTGCGAGTTATATTGATTTG
Found at i:87473994 original size:30 final size:30
Alignment explanation
Indices: 87473960--87474016 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
87473950 TACGAGCTTT
*
87473960 GGGGCAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGCAAAAGTATAAATATGCAAAAGTTTA
* * *
87473990 GGGGCAAAATTATAATTTTGCAAAAGT
1 GGGGCAAAAGTATAAATATGCAAAAGT
87474017 ATGATTTTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.26
Consensus pattern (30 bp):
GGGGCAAAAGTATAAATATGCAAAAGTTTA
Found at i:87480932 original size:46 final size:46
Alignment explanation
Indices: 87480851--87481109 Score: 251
Period size: 46 Copynumber: 5.7 Consensus size: 46
87480841 AATATACGAA
* * * *
87480851 TCGCATGCTGCTAATCATATGAATTTGCATGAAGGCGTATATAGGGT
1 TCGCATACTGCTAA-CATGTGAGTTTGCATAAAGGCGTATATAGGGT
* *
87480898 TCGCATACTACTAACGTGTGAGTTTGCATAAAGGCGTATATAGGGT
1 TCGCATACTGCTAACATGTGAGTTTGCATAAAGGCGTATATAGGGT
* * * * *
87480944 TCACATACTGTTAATATGTGAGTTTGTATAAAGGTGTATATAGGGT
1 TCGCATACTGCTAACATGTGAGTTTGCATAAAGGCGTATATAGGGT
* * * *
87480990 TTGCATACTGCCAACATGTGAGTTTGTAT-AA--CAG-ACAT-GGGT
1 TCGCATACTGCTAACATGTGAGTTTGCATAAAGGC-GTATATAGGGT
* * ** * *
87481032 TCGTATACTGCTAACATTGTGAATTTGCATAACTG-ATATATATAGGT
1 TCGCATACTGCTAACA-TGTGAGTTTGCATAAAGGCGTATATA-GGGT
87481079 TCGCATACTGCTAACATGTGAGTTTGCATAA
1 TCGCATACTGCTAACATGTGAGTTTGCATAA
87481110 CAAACATAGA
Statistics
Matches: 173, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
42 17 0.10
43 14 0.08
44 2 0.01
45 5 0.03
46 105 0.61
47 30 0.17
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (46 bp):
TCGCATACTGCTAACATGTGAGTTTGCATAAAGGCGTATATAGGGT
Found at i:87481107 original size:23 final size:23
Alignment explanation
Indices: 87480988--87481108 Score: 67
Period size: 23 Copynumber: 5.4 Consensus size: 23
87480978 TGTATATAGG
*
87480988 GTTTGCATACTGCCAACATGTGA
1 GTTTGCATACTGCTAACATGTGA
* *
87481011 GTTTGTATA--AC-AGACATG-G-
1 GTTTGCATACTGCTA-ACATGTGA
* *
87481030 GTTCGTATACTGCTAACATTGTGA
1 GTTTGCATACTGCTAACA-TGTGA
* * * *
87481054 ATTTGCATAACTGAT-ATATAT-A
1 GTTTGCAT-ACTGCTAACATGTGA
*
87481076 GGTTCGCATACTGCTAACATGTGA
1 -GTTTGCATACTGCTAACATGTGA
87481100 GTTTGCATA
1 GTTTGCATA
87481109 ACAAACATAG
Statistics
Matches: 71, Mismatches: 16, Indels: 22
0.65 0.15 0.20
Matches are distributed among these distances:
19 8 0.11
20 2 0.03
21 10 0.14
22 9 0.13
23 29 0.41
24 8 0.11
25 5 0.07
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (23 bp):
GTTTGCATACTGCTAACATGTGA
Found at i:87481141 original size:46 final size:46
Alignment explanation
Indices: 87480895--87481133 Score: 157
Period size: 46 Copynumber: 5.3 Consensus size: 46
87480885 GCGTATATAG
* * * ** * *
87480895 GGTTCGCATACTACTAACGTGTGAGTTTGCATAA-AGGCGTATATA
1 GGTTCACATACTGCTAACATGTGAGTTTGCATAACAAACATAGATA
* * * **** *
87480940 GGGTTCACATACTGTTAATATGTGAGTTTGTATAA-AGGTGTATATA
1 -GGTTCACATACTGCTAACATGTGAGTTTGCATAACAAACATAGATA
** * * *
87480986 GGGTTTGCATACTGCCAACATGTGAGTTTGTATAACAGACAT-G---
1 -GGTTCACATACTGCTAACATGTGAGTTTGCATAACAAACATAGATA
** * ** * *
87481029 GGTTCGTATACTGCTAACATTGTGAATTTGCATAACTGATATATATA
1 GGTTCACATACTGCTAACA-TGTGAGTTTGCATAACAAACATAGATA
*
87481076 GGTTCGCATACTGCTAACATGTGAGTTTGCATAACAAACATAGATA
1 GGTTCACATACTGCTAACATGTGAGTTTGCATAACAAACATAGATA
87481122 GGTTCACATACT
1 GGTTCACATACT
87481134 TTAAACATAT
Statistics
Matches: 156, Mismatches: 31, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
42 16 0.10
43 18 0.12
46 101 0.65
47 21 0.13
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (46 bp):
GGTTCACATACTGCTAACATGTGAGTTTGCATAACAAACATAGATA
Found at i:87483619 original size:48 final size:48
Alignment explanation
Indices: 87483553--87483740 Score: 216
Period size: 48 Copynumber: 3.9 Consensus size: 48
87483543 ATAATAGGAT
* * *
87483553 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
* * * *
87483601 TAGGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCA-A
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT-ATA
* * * * * *
87483649 CATGTGGGCTAGTGTAAAACCATGTTTGGAACATGGCATCGGCACCGATA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA--TATA
*
87483699 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGG
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGG
87483741 TATCTTACCC
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
48 77 0.67
49 1 0.01
50 37 0.32
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
Found at i:87485576 original size:18 final size:18
Alignment explanation
Indices: 87485540--87485578 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
87485530 AAAATTTTTT
*
87485540 AATTTAAAAATCATTAAA
1 AATTTAAAAATCATCAAA
87485558 AATTATAAAAAT-ATCAAA
1 AATT-TAAAAATCATCAAA
87485576 AAT
1 AAT
87485579 ATTTTCTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (18 bp):
AATTTAAAAATCATCAAA
Found at i:87492240 original size:15 final size:13
Alignment explanation
Indices: 87492208--87492242 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
87492198 TCAACCCACA
87492208 ATTTTTTTTTTGT
1 ATTTTTTTTTTGT
87492221 ATTTTATTTTTTGT
1 ATTTT-TTTTTTGT
87492235 ACTTTTTT
1 A-TTTTTT
87492243 ATCACTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 11 0.55
15 4 0.20
ACGTcount: A:0.11, C:0.03, G:0.06, T:0.80
Consensus pattern (13 bp):
ATTTTTTTTTTGT
Found at i:87505349 original size:15 final size:14
Alignment explanation
Indices: 87505329--87505377 Score: 71
Period size: 15 Copynumber: 3.4 Consensus size: 14
87505319 GTTATTAAGG
87505329 TTAATTAATTAATAT
1 TTAATTAATTAA-AT
87505344 TTAATTAATTAAAT
1 TTAATTAATTAAAT
*
87505358 TTGATTAATTAAGAT
1 TTAATTAATTAA-AT
87505373 TTAAT
1 TTAAT
87505378 CTAAGTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 13 0.42
15 18 0.58
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
TTAATTAATTAAAT
Found at i:87508688 original size:30 final size:30
Alignment explanation
Indices: 87508630--87508710 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
87508620 CAGGTAGCCT
* * * *
87508630 TGATATAATGTCAGCTTATGTGATCAACCC
1 TGATATAATGTCAACTTGTGTAAGCAACCC
87508660 -GATTATAATGTCAACTTGTGTAAGCAACCC
1 TGA-TATAATGTCAACTTGTGTAAGCAACCC
*
87508690 TGA-AAAACTGTCAACTTGTGT
1 TGATATAA-TGTCAACTTGTGT
87508711 GGGCATTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
29 5 0.12
30 36 0.84
31 2 0.05
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (30 bp):
TGATATAATGTCAACTTGTGTAAGCAACCC
Found at i:87509339 original size:10 final size:9
Alignment explanation
Indices: 87509301--87509424 Score: 67
Period size: 9 Copynumber: 13.6 Consensus size: 9
87509291 ACATGTGGCA
87509301 AAAAATTAT
1 AAAAATTAT
87509310 -AAAA--AT
1 AAAAATTAT
*
87509316 AAAAATAAAT
1 AAAAAT-TAT
*
87509326 AAAATTTAT
1 AAAAATTAT
87509335 AAAAATTAT
1 AAAAATTAT
* *
87509344 -TAAATTTT
1 AAAAATTAT
* **
87509352 AATAAGAAT
1 AAAAATTAT
*
87509361 AAAAATGTTT
1 AAAAAT-TAT
*
87509371 AAAATTTAGT
1 AAAAATTA-T
*
87509381 AAAAATTAGAA
1 AAAAATT--AT
87509392 AAAAATTAT
1 AAAAATTAT
*
87509401 AAAAATCAT
1 AAAAATTAT
87509410 AAAAAATTAT
1 -AAAAATTAT
87509420 AAAAA
1 AAAAA
87509425 AACTATAAAT
Statistics
Matches: 84, Mismatches: 21, Indels: 20
0.67 0.17 0.16
Matches are distributed among these distances:
6 2 0.02
7 4 0.05
8 10 0.12
9 32 0.38
10 28 0.33
11 7 0.08
12 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:87509404 original size:30 final size:30
Alignment explanation
Indices: 87509381--87509463 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 30
87509371 AAAATTTAGT
87509381 AAAAATTAGAAAAAAATTATAAAAATCATA
1 AAAAATTAGAAAAAAATTATAAAAATCATA
* * *
87509411 AAAAATTATAAAAAAACTAT-AAATTCTATA
1 AAAAATTAGAAAAAAATTATAAAAATC-ATA
* * *
87509441 AAAAAATA-ATAAAATTTATAAAA
1 AAAAATTAGAAAAAAATTATAAAA
87509464 TGCATCAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
29 13 0.30
30 31 0.70
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.27
Consensus pattern (30 bp):
AAAAATTAGAAAAAAATTATAAAAATCATA
Found at i:87509425 original size:10 final size:10
Alignment explanation
Indices: 87509381--87509425 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
87509371 AAAATTTAGT
*
87509381 AAAAATTAGAA
1 AAAAATTA-TA
87509392 AAAAATTAT-
1 AAAAATTATA
*
87509401 AAAAATCATA
1 AAAAATTATA
87509411 AAAAATTATA
1 AAAAATTATA
87509421 AAAAA
1 AAAAA
87509426 ACTATAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.27
10 14 0.47
11 8 0.27
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (10 bp):
AAAAATTATA
Found at i:87509425 original size:20 final size:19
Alignment explanation
Indices: 87509391--87509463 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
87509381 AAAAATTAGA
*
87509391 AAAAAATTATAAAAATCAT
1 AAAAAATTATAAAAAACAT
87509410 AAAAAATTATAAAAAA-ACT
1 AAAAAATTATAAAAAACA-T
* *
87509429 ATAAATTCTATAAAAAA-AT
1 AAAAAAT-TATAAAAAACAT
87509448 AATAAAATTTATAAAA
1 AA-AAAA-TTATAAAA
87509464 TGCATCAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.02
19 23 0.51
20 20 0.44
21 1 0.02
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.27
Consensus pattern (19 bp):
AAAAAATTATAAAAAACAT
Found at i:87509426 original size:11 final size:11
Alignment explanation
Indices: 87509381--87509433 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
87509371 AAAATTTAGT
*
87509381 AAAAATTAGAA
1 AAAAATTATAA
87509392 AAAAATTAT--
1 AAAAATTATAA
*
87509401 AAAAATCAT-A
1 AAAAATTATAA
87509411 AAAAATTATAA
1 AAAAATTATAA
*
87509422 AAAAACTATAA
1 AAAAATTATAA
87509433 A
1 A
87509434 TTCTATAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
9 8 0.22
10 8 0.22
11 20 0.56
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.23
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:87509700 original size:18 final size:18
Alignment explanation
Indices: 87509654--87509701 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
87509644 GTACAATAAT
87509654 TTTTATAATTTTTTACGAA
1 TTTTATAATTTTTTAC-AA
*
87509673 TTTTCT-ATTTCTTTAC-A
1 TTTTATAATTT-TTTACAA
87509690 TTTTATAATTTT
1 TTTTATAATTTT
87509702 CTTAGGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 7 0.28
18 8 0.32
19 10 0.40
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTTATAATTTTTTACAA
Found at i:87509767 original size:28 final size:28
Alignment explanation
Indices: 87509696--87509761 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
87509686 TACATTTTAT
* * * *
87509696 AATTTTCTTAGGACTTTATAAAATTTTAT
1 AATTTT-TTACGATTTTATAAAATTTAAC
87509725 AATTTTTTACGATTTTATAAAATTTAAC
1 AATTTTTTACGATTTTATAAAATTTAAC
87509753 AATTTTTTA
1 AATTTTTTA
87509762 TTATTTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 27 0.82
29 6 0.18
ACGTcount: A:0.36, C:0.06, G:0.05, T:0.53
Consensus pattern (28 bp):
AATTTTTTACGATTTTATAAAATTTAAC
Found at i:87509844 original size:19 final size:18
Alignment explanation
Indices: 87509804--87509855 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
87509794 TTTAATATTT
87509804 TTTA-TATTTTTATTAAAA
1 TTTATTATTTTTA-TAAAA
**
87509822 TTTAATTATTTTTATAACT
1 TTT-ATTATTTTTATAAAA
87509841 TTTATTGATTTTTAT
1 TTTATT-ATTTTTAT
87509856 TTTTTTATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 6 0.21
19 15 0.52
20 8 0.28
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTATTATTTTTATAAAA
Found at i:87513579 original size:55 final size:55
Alignment explanation
Indices: 87513483--87513589 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
87513473 GGTCAATTTA
* *
87513483 GTACACGGGTAGGACACATGGGCATGTGCCTAGCCCGTGCTTCAAAGTCAGTAGC
1 GTACACGGGTAGGACACATGGGCATGTGCCTAGCCCATGCTTAAAAGTCAGTAGC
* * *
87513538 GTACACGGGTAGGCCACATGGGCGTGTGCCTTAG-CCATGCTTAAAATTCAGT
1 GTACACGGGTAGGACACATGGGCATGTGCC-TAGCCCATGCTTAAAAGTCAGT
87513590 GTTGCACACG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
55 43 0.93
56 3 0.07
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.22
Consensus pattern (55 bp):
GTACACGGGTAGGACACATGGGCATGTGCCTAGCCCATGCTTAAAAGTCAGTAGC
Found at i:87519411 original size:44 final size:44
Alignment explanation
Indices: 87519362--87520070 Score: 395
Period size: 44 Copynumber: 15.6 Consensus size: 44
87519352 AATCCATTCT
* * *
87519362 ACTGCAACTTCAGAGAGATAAGACTCGTAGCTTCAATCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGCTCC
* * * * *
87519406 GCTGCAATTTCAGGGAGATGAGATTTGTGATTTGATTTAATCTGAC-CC
1 ACTGCAACTTCAGAGAGATAAGATTTGT-A---GCTTTAATCTG-CTCC
** * * *
87519454 ACTATAACTTCAGA-AGTATAGGATTTGTTGCTTTAAACTGCTCC
1 ACTGCAACTTCAGAGAG-ATAAGATTTGTAGCTTTAATCTGCTCC
* * * * * * *
87519498 ACTGTAACTTCAGGGAGATTATACTTGTGGCTTTAATTTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGCTCC
* * * ** *
87519542 ACTGCAACTTTAGGGAGAGAAGATTTGTTTATTTTTAACCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTTG--TAGCTTTAATCTGCTCC
* * * * *
87519588 ACTGCAACTTTAGGGAGATAAGGTTTGTAGCTTTAATCTCCTCT
1 ACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGCTCC
* * * *
87519632 ACTGTAACTTCAGAGAGATAAGATTT-TCTGTTTTCAATCTACTCC
1 ACTGCAACTTCAGAGAGATAAGATTTGT-AGCTTT-AATCTGCTCC
* *
87519677 ACTGCAACTTCA-AGGAGATAAGATTTGTAATTTGTAGCTTTAATTTGTTCC
1 ACTGCAACTTCAGA-GAGAT-A-A---G--ATTTGTAGCTTTAATCTGCTCC
** * * * * * *
87519728 ACTATAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTTG-TAGCTTTAATCTGCTCC
* * * * * * * * *
87519773 ATTACAACTTTAGGGAGATAAGACTCGTA-ATTTCAACCTGCTCT
1 ACTGCAACTTCAGAGAGATAAGATTTGTAGCTTT-AATCTGCTCC
* * * *
87519817 ACTGCAGCTTCAGAGAGATAAGGTTTATAGCTTTAATCTGCTCT
1 ACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGCTCC
* ** *
87519861 ACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATCTACTCC
1 ACTGCAACTTCAGAGAGATAAGATTTG-TAGCTTTAATCTGCTCC
* * * *
87519906 ACTGCAACTTCAGAGAGATAAGATCTGTGGCTTTAATTTGCTCT
1 ACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGCTCC
* * *
87519950 ACTACAACTTCA-AGGAGATAGGATTTGTAATTTGTAGCTTTAATATGTTCC
1 ACTGCAACTTCAGA-GAGATA--A---G--ATTTGTAGCTTTAATCTGCTCC
* * * * * * *
87520001 ACTACAACTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTTG-TAGCTTTAATCTGCTCC
* * *
87520046 ACTGTAACTTTAGGGAGATAAGATT
1 ACTGCAACTTCAGAGAGATAAGATT
87520071 CACTATAATG
Statistics
Matches: 505, Mismatches: 124, Indels: 71
0.72 0.18 0.10
Matches are distributed among these distances:
43 5 0.01
44 222 0.44
45 135 0.27
46 41 0.08
47 3 0.01
48 29 0.06
49 4 0.01
50 2 0.00
51 55 0.11
52 8 0.02
53 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (44 bp):
ACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGCTCC
Found at i:87519603 original size:90 final size:89
Alignment explanation
Indices: 87519485--87519929 Score: 255
Period size: 89 Copynumber: 4.9 Consensus size: 89
87519475 GATTTGTTGC
* * * * * *
87519485 TTTAAACTGCTCCACTGTAACTTCAGGGAGATTATACTTGTGGCTTTAATTTGCTCCACTGCAAC
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTTAATCTCCTCCACTGCAAC
* * *
87519550 TTTAGGGAGAGAAGATTTGTTTATT
66 TTCAGAGAGAGAAGATTT-TCTATT
* * ** * *
87519575 TTTAACCTGCTCCACTGCAACTTTAGGGAGATAAGGTTTGTAGCTTTAATCTCCTCTACTGTAAC
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTTAATCTCCTCCACTGCAAC
* *
87519640 TTCAGAGAGATAAGATTTTCTGTT
66 TTCAGAGAGAGAAGATTTTCTATT
* * * * * * **
87519664 TTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAATTTGTAGCTTTAATTTGTTCCA
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGAT-A-A---G--ACTTGTAGCTTTAATCTCCTCCA
** * * * ** *
87519729 CTATAACTTCAGGGAAATAAGATTCGCTATC
59 CTGCAACTTCAGAGAGAGAAGATTTTCTATT
* ** * * * * * * * * *
87519760 TTCAGTCTGCTCCATTACAACTTTAGGGAGATAAGACTCGTA-ATTTCAACCTGCTCTACTGCAG
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTT-AATCTCCTCCACTGCAA
* * * **
87519824 CTTCAGAGAGATAAG-GTTTATAGC
65 CTTCAGAGAGAGAAGATTTTCTATT
* * * * * ** *
87519848 TTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATCTACTCCACTGCAA
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAGCTTTAATCTCCTCCACTGCAA
*
87519913 CTTCAGAGAGATAAGAT
65 CTTCAGAGAGAGAAGAT
87519930 CTGTGGCTTT
Statistics
Matches: 270, Mismatches: 74, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
88 38 0.14
89 88 0.33
90 71 0.26
91 2 0.01
94 2 0.01
95 1 0.00
96 68 0.25
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (89 bp):
TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTTAATCTCCTCCACTGCAAC
TTCAGAGAGAGAAGATTTTCTATT
Found at i:87519807 original size:140 final size:141
Alignment explanation
Indices: 87519663--87520069 Score: 469
Period size: 140 Copynumber: 3.0 Consensus size: 141
87519653 GATTTTCTGT
* * *
87519663 TTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAATTTGTAGCTTTAATTTGTTCC
1 TTTCAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTGTAATTTGTAGCTTTAATATGTTCC
* * *
87519728 ACTATAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCATTACAACTTTAGGGAGATA
66 ACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATA
87519793 AGA-CTCGT-AA
131 AGATCT-GTGAA
* * * * *
87519803 TTTCAACCTGCTCTACTGCAGCTTC-AGAGAGATAAG----G---TTTATAGCTTTAATCTGCTC
1 TTTCAATCTGCTCTACTGCAACTTCAAG-GAGATAAGATTTGTAATTTGTAGCTTTAATATGTTC
* * * * * * * *
87519860 TACTGCAACTTCAGAGAGATAAGATTTGCTATCTTC-GATCTACTCCACTGCAACTTCAGAGAGA
65 CACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAG-TCTGCTCCACTGCAACTTTAGGGAGA
**
87519924 TAAGATCTGTGGC
129 TAAGATCTGTGAA
* * *
87519937 TTT-AATTTGCTCTACTACAACTTCAAGGAGATAGGATTTGTAATTTGTAGCTTTAATATGTTCC
1 TTTCAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTGTAATTTGTAGCTTTAATATGTTCC
* *
87520001 ACTACAACTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGCTCCACTGTAACTTTAGGGAGATA
66 ACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATA
87520066 AGAT
131 AGAT
87520070 TCACTATAAT
Statistics
Matches: 216, Mismatches: 38, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
132 1 0.00
133 99 0.46
134 7 0.03
136 1 0.00
137 1 0.00
139 2 0.01
140 104 0.48
141 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (141 bp):
TTTCAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTGTAATTTGTAGCTTTAATATGTTCC
ACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATA
AGATCTGTGAA
Found at i:87519891 original size:133 final size:136
Alignment explanation
Indices: 87519681--87520069 Score: 389
Period size: 133 Copynumber: 2.8 Consensus size: 136
87519671 TACTCCACTG
* * * *
87519681 CAACTTCAAGGAGATAAGATTTGTAATTTGTAGCTTTAATTTGTTCCACTATAACTTCAGGGAAA
1 CAACTTCAAGGAGATAGGA-TTGTAA--T-TAGCTTTAATATGCTCCACTACAACTTCAGGGAAA
* *
87519746 TAAGATTCGCTATCTTCAGTCTGCTCCATTACAACTTTAGGGAGATAAGA-CTCGT-AATTTCAA
62 TAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGATCT-GTGAATTT-AA
*
87519809 CCTGCTCTACTG
125 CCTGCTCTACTA
* * * * * *
87519821 CAGCTTC-AGAGAGATAAGG-TT-T-A-TAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATA
1 CAACTTCAAG-GAGAT-AGGATTGTAATTAGCTTTAATATGCTCCACTACAACTTCAGGGAAATA
* * * * ** **
87519881 AGATTTGCTATCTTC-GATCTACTCCACTGCAACTTCAGAGAGATAAGATCTGTGGCTTTAATTT
64 AGATTCGCTATCTTCAG-TCTGCTCCACTGCAACTTTAGGGAGATAAGATCTGTGAATTTAACCT
87519945 GCTCTACTA
128 GCTCTACTA
*
87519954 CAACTTCAAGGAGATAGGATTTGTAATTTGTAGCTTTAATATGTTCCACTACAACTTCAGGGAAA
1 CAACTTCAAGGAGATAGGA-TTGTAA--T-TAGCTTTAATATGCTCCACTACAACTTCAGGGAAA
* *
87520019 TAAGATTCGTTATCTTCAGTCTGCTCCACTGTAACTTTAGGGAGATAAGAT
62 TAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGAT
87520070 TCACTATAAT
Statistics
Matches: 201, Mismatches: 33, Indels: 30
0.76 0.12 0.11
Matches are distributed among these distances:
132 4 0.02
133 94 0.47
134 9 0.04
135 1 0.00
136 1 0.00
137 1 0.00
138 1 0.00
139 4 0.02
140 83 0.41
141 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (136 bp):
CAACTTCAAGGAGATAGGATTGTAATTAGCTTTAATATGCTCCACTACAACTTCAGGGAAATAAG
ATTCGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGATCTGTGAATTTAACCTGCT
CTACTA
Found at i:87519969 original size:273 final size:273
Alignment explanation
Indices: 87519575--87520068 Score: 731
Period size: 273 Copynumber: 1.8 Consensus size: 273
87519565 TTTGTTTATT
* * * * * * *
87519575 TTTAACCTGCTCCACTGCAACTTTAGGGAGATAAGGTTTGTAGCTTTAATCTCCTCTACTGTAAC
1 TTTAACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAAC
* * * *
87519640 TTCAGAGAGATAAGATTTTCTGTTTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGT
66 TTCAGAGAGATAAGATTGTCGGCTTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATTTGT
* *
87519705 AATTTGTAGCTTTAATTTGTTCCACTATAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGC
131 AATTTGTAGCTTTAATATGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGC
*
87519770 TCCATTACAACTTTAGGGAGATAAGACTCGTAATTTCAACCTGCTCTACTGCAGCTTCAGAGAGA
196 TCCACTACAACTTTAGGGAGATAAGACTCGTAATTTCAACCTGCTCTACTGCAGCTTCAGAGAGA
87519835 TAAGGTTTATAGC
261 TAAGGTTTATAGC
* * * *
87519848 TTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATCTACTCCACTGCAA
1 TTTAACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAGCTTCAATCTACTCCACTGCAA
* * * *
87519913 CTTCAGAGAGATAAGATCTGT-GGCTTT-AATTTGCTCTACTACAACTTCAAGGAGATAGGATTT
65 CTTCAGAGAGATAAGAT-TGTCGGCTTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATTT
*
87519976 GTAATTTGTAGCTTTAATATGTTCCACTACAACTTCAGGGAAATAAGATTCGTTATCTTCAGTCT
129 GTAATTTGTAGCTTTAATATGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCT
**
87520041 GCTCCACTGTAACTTTAGGGAGATAAGA
194 GCTCCACTACAACTTTAGGGAGATAAGA
87520069 TTCACTATAA
Statistics
Matches: 194, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
273 153 0.79
274 39 0.20
275 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (273 bp):
TTTAACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAAC
TTCAGAGAGATAAGATTGTCGGCTTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATTTGT
AATTTGTAGCTTTAATATGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGC
TCCACTACAACTTTAGGGAGATAAGACTCGTAATTTCAACCTGCTCTACTGCAGCTTCAGAGAGA
TAAGGTTTATAGC
Found at i:87520066 original size:229 final size:223
Alignment explanation
Indices: 87519483--87520067 Score: 591
Period size: 229 Copynumber: 2.6 Consensus size: 223
87519473 AGGATTTGTT
** ** * * * * * * *
87519483 GCTTTAAACTGCTCCACTGTAACTTCAGGGAGATTATACTTGTGGCTTTAATTTGCTCCACTGCA
1 GCTTTAATTTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAGCTTTAATATGCTCCACTACA
* * *
87519548 ACTTTAGGGAGAGAAGATTTGTTTATTTTTAACCTGCTCCACTGCAACTTTAGGGAGATAAGGTT
66 ACTTTAGGGAGATAAGATTCG-TTA-TTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGGTT
* * * * *
87519613 TGTAGCTTTAATCTCCTCTACTGTAACTTCAGAGAGATAAGATTTTCTGTTTTCAATCTACTCCA
129 TATAGCTTTAATCTCCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCA
*
87519678 CTGCAACTTCAAGGAGATAAGATTTGTAATTTGTA
194 CTGCAACTTCAAGGAGATAAGATCTG----TTG-A
* * * * * * * *
87519713 GCTTTAATTTGTTCCACTATAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCATTAC
1 GCTTTAATTTGCTCCACTACAACTTCAGGGAAATAAGATTTG-TAGCTTTAATATGCTCCACTAC
* * * * * *
87519778 AACTTTAGGGAGATAAGACTCGTAATTTCAACCTGCTCTACTGCAGCTTCAGAGAGATAAGGTTT
65 AACTTTAGGGAGATAAGATTCGTTATTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGGTTT
* *
87519843 ATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATCTACTCCAC
130 ATAGCTTTAATCTCCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCAC
87519908 TGCAACTTC-AGAGAGATAAGATCTG-TG-
195 TGCAACTTCAAG-GAGATAAGATCTGTTGA
* ** *
87519935 GCTTTAATTTGCTCTACTACAACTTCAAGGAGATAGGATTTGTAATTTGTAGCTTTAATATGTTC
1 GCTTTAATTTGCTCCACTACAACTTC-AGG-GA-A--ATAAG--ATTTGTAGCTTTAATATGCTC
* * ** *
87520000 CACTACAACTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGCTCCACTGTAACTTTAGGGAGAT
59 CACTACAACTTTAGGGAGATAAGATTCGTTAT-TTCAACCTGCTCCACTGCAACTTTAGGGAGAT
87520065 AAG
123 AAG
87520068 ATTCACTATA
Statistics
Matches: 289, Mismatches: 56, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
222 23 0.08
223 3 0.01
224 4 0.01
225 1 0.00
227 3 0.01
228 40 0.14
229 146 0.51
230 35 0.12
231 34 0.12
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (223 bp):
GCTTTAATTTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAGCTTTAATATGCTCCACTACA
ACTTTAGGGAGATAAGATTCGTTATTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGGTTTA
TAGCTTTAATCTCCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACT
GCAACTTCAAGGAGATAAGATCTGTTGA
Found at i:87520780 original size:39 final size:39
Alignment explanation
Indices: 87520703--87520781 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
87520693 TCAGATGAAA
* * * *
87520703 ATAGGTCCCTAGATATCATAGCATGATCTTTTTTGCACT
1 ATAGGTCCCTAGATATCATAGCATAAGCTTCTTCGCACT
*
87520742 ATAGGTCCCTAGATATCATAGTATAAGCTTCTTCGCACT
1 ATAGGTCCCTAGATATCATAGCATAAGCTTCTTCGCACT
87520781 A
1 A
87520782 ACTTCTCGCG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (39 bp):
ATAGGTCCCTAGATATCATAGCATAAGCTTCTTCGCACT
Found at i:87531949 original size:5 final size:5
Alignment explanation
Indices: 87531934--87531963 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
87531924 ATAATAGTAA
87531934 TAATAT TAATT TAATT TAATT TAATT TAAT
1 TAAT-T TAATT TAATT TAATT TAATT TAAT
87531964 AATAAAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TAATT
Found at i:87536274 original size:13 final size:12
Alignment explanation
Indices: 87536251--87536296 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 12
87536241 AAGGGTAGGA
87536251 TTCTGTATATCTG
1 TTCTGT-TATCTG
87536264 TTCTGCTTATCTG
1 TTCTG-TTATCTG
87536277 ATTCTGTTATCTG
1 -TTCTGTTATCTG
87536290 TATCTGT
1 T-TCTGT
87536297 AAAGGACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.03
13 23 0.77
14 6 0.20
ACGTcount: A:0.13, C:0.17, G:0.15, T:0.54
Consensus pattern (12 bp):
TTCTGTTATCTG
Found at i:87539033 original size:45 final size:44
Alignment explanation
Indices: 87538939--87539079 Score: 122
Period size: 46 Copynumber: 3.1 Consensus size: 44
87538929 TGGACTACAA
* * * * *
87538939 TTAAGCTCGTGCTTAGGAGTGTCATCATTTATTATGTATGAACAAT
1 TTAAACTCATGCTTAGGAG-GTCATCATTTATT-TATATGAATAGT
*
87538985 TTAAATTCATGCTTAGGAGGTCATCATTTATTTCATATGAATAGT
1 TTAAACTCATGCTTAGGAGGTCATCATTTATTT-ATATGAATAGT
* * * * *
87539030 TTAAGCTCGTGCTTCA-GAGGATCATCATTTGTTTTTTATTAATAGT
1 TTAAACTCATGCTT-AGGAGG-TCATCATTT-ATTTATATGAATAGT
87539076 TTAA
1 TTAA
87539080 GATTGTGCTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
44 1 0.01
45 36 0.46
46 39 0.49
47 3 0.04
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (44 bp):
TTAAACTCATGCTTAGGAGGTCATCATTTATTTATATGAATAGT
Found at i:87540900 original size:50 final size:50
Alignment explanation
Indices: 87540828--87540928 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
87540818 TAAGGAATAC
* *
87540828 AAAGTCACCCACCGAGTACTAGATATGTATCCTTTTCAGATTCGCATAGG
1 AAAGTCACCAACCGAGTACTAGATATGTATCCTTTTCAGATCCGCATAGG
* *
87540878 AAAGTCACCAATCGAGTACTAGATATTTATCCTTTTCAGATCCGCATAGG
1 AAAGTCACCAACCGAGTACTAGATATGTATCCTTTTCAGATCCGCATAGG
87540928 A
1 A
87540929 CTTCCGTCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.29
Consensus pattern (50 bp):
AAAGTCACCAACCGAGTACTAGATATGTATCCTTTTCAGATCCGCATAGG
Found at i:87555502 original size:131 final size:131
Alignment explanation
Indices: 87554948--87555584 Score: 511
Period size: 131 Copynumber: 4.8 Consensus size: 131
87554938 TAGAAAATAC
* * * * * *
87554948 GAGTGAAATTCTGAAGAGACATTCGATTATTTTGAACAAAC-GGGAGATTGCAACCCAACACGGT
1 GAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAAACAAGAAG-TTGCAACCCAGCACGAT
** * ** * * *
87555012 AGGGCAATATTCCCCGAATTGCCAAACATCGAACATTTCTTTCATTTTAA-AGAGTTTTTAGAAA
65 AGGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTC-GTTTAAGGGA-TTTTTA-AAA
*
87555076 -ACGT
127 GACAT
* * * * ** *
87555080 GAGTGAAATTCCGAAGGGATCTTTGATCATTTTGAACAAGTGAAAAAG-TGCAACCCAGCACGAT
1 GAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAA-ACAAGAAGTTGCAACCCAGCACGAT
* * *
87555144 AGGGCACGATT-CTTGAATTGCCAAACATCGAACATCGCCTTTGTTTTAAAGGGTTTTCTTAAAA
65 AGGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTCG-TTT-AAGGGATTT-TTAAAA
*
87555208 AACAT
127 GACAT
** * * * * * **
87555213 GAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATA
1 GAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAAACAAGAAGTTGCAACCCAGCACGATA
* * * ** * * *
87555278 GGGCATGATTCC-CG-ATTGTCAAACACCGAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGAC
66 GGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTCG-TTTAAGGGATTTTTAAAAGAC
87555341 AT
130 AT
* * * * *
87555343 GAGTGAGATTTTGAAGGGATATTTGATTATTTT-AAGCAAATAAGAAGTTGCAACCCAGCACGTT
1 GAGTGAAATTCTGAAGGGATATTCGATTATTTTGAA-CAAACAAGAAGTTGCAACCCAGCACGAT
* *
87555407 AGGGCACGATTCCGCGAATTGCCAATA-ATCGCACATCGCCTTCGTTTAAGGGATTTTTAAAAGA
65 AGGGCACGATTCCTCGAATTGCCAA-ACATCGAACATCGCCTTCGTTTAAGGGATTTTTAAAAGA
87555471 CAT
129 CAT
* * ** * * * * *
87555474 GGGTGAAATTCTAAAGGGACCTTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAACAC-ATT
1 GAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAAACAAGAAGTTGCAACCCAGCACGA-T
* * * ** *
87555538 AGGGCACGATTTCTCGACTTACCAAGTATCGAATATCGCCTTCGTTT
65 AGGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTCGTTT
87555585 TAAAAGATTC
Statistics
Matches: 392, Mismatches: 97, Indels: 33
0.75 0.19 0.06
Matches are distributed among these distances:
129 2 0.01
130 68 0.17
131 144 0.37
132 112 0.29
133 63 0.16
134 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (131 bp):
GAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAAACAAGAAGTTGCAACCCAGCACGATA
GGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTCGTTTAAGGGATTTTTAAAAGACA
T
Found at i:87555581 original size:263 final size:262
Alignment explanation
Indices: 87554948--87555601 Score: 694
Period size: 263 Copynumber: 2.5 Consensus size: 262
87554938 TAGAAAATAC
* * * * *
87554948 GAGTGAAATTCTGAAGAGACATTCGATTATTTTGAACAAACGGGAGATTGCAACCCAACACGGTA
1 GAGTGAAATTCTAAAGGGACATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACAC-ATA
* * * * * *
87555013 GGGCAATATTCCCCGAATTGCCAAACATCGAACATTTCTTTCATTTTAAAGAGTTTTTAGAAAAC
65 GGGCAAGATTTCCCG-ATTGCCAAACATCGAATATTGCCTTCGTTTTAAAGA-TTTTTAGAAAAC
* * *
87555078 GTGAGTGAAATTCCGAAGGGATCTTTGATCATTTTGAACAAGTGAAAAAGTGCAACCCAGCACGA
128 ATGAGTGAAATTCCGAAGGGATATTTGATCATTTTGAACAAATGAAAAAGTGCAACCCAGCACGA
** * *
87555143 TAGGGCACGATTCTTGAATTGCCAAACATCGAACATCGCCTTTGTTTTAAAGGGTTTTCTTAAAA
193 TAGGGCACGATTCGCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAAGGGATTTCTTAAAA
87555208 AACAT
258 AACAT
** * * * ** *
87555213 GAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATA
1 GAGTGAAATTCTAAAGGGACATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACAC-ATA
* * * * *
87555278 GGGCATGA-TTCCCGATTGTCAAACACCGAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGACA
65 GGGCAAGATTTCCCGATTGCCAAACATCGAATATTGCCTTCGTTTTAAA-GATTTTTAGAAAACA
* ** * *
87555342 TGAGTGAGATTTTGAAGGGATATTTGATTATTTT-AAGCAAAT-AAGAAGTTGCAACCCAGCACG
129 TGAGTGAAATTCCGAAGGGATATTTGATCATTTTGAA-CAAATGAAAAAG-TGCAACCCAGCACG
* *
87555405 TTAGGGCACGATTCCGCGAATTGCCAATA-ATCGCACATCGCCTTCG-TTT-AAGGGATTT-TTA
192 ATAGGGCACGATT-CGCGAATTGCCAA-ACATCGAACATCGCCTTCGTTTTAAAGGGATTTCTTA
*
87555466 AAAGACAT
255 AAAAACAT
* * * *
87555474 GGGTGAAATTCTAAAGGGACCTTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAACACATTA
1 GAGTGAAATTCTAAAGGGACATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACA-TA
* * * ** * *
87555539 GGGCACGATTTCTCGACTTACCAAGTATCGAATATCGCCTTCGTTTTAAAAGATTCTTA-AAAA
65 GGGCAAGATTTCCCGA-TTGCCAAACATCGAATATTGCCTTCGTTTT-AAAGATTTTTAGAAAA
87555602 TTGTGAAACG
Statistics
Matches: 318, Mismatches: 62, Indels: 21
0.79 0.15 0.05
Matches are distributed among these distances:
260 1 0.00
261 68 0.21
262 24 0.08
263 130 0.41
264 36 0.11
265 59 0.19
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (262 bp):
GAGTGAAATTCTAAAGGGACATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACATAG
GGCAAGATTTCCCGATTGCCAAACATCGAATATTGCCTTCGTTTTAAAGATTTTTAGAAAACATG
AGTGAAATTCCGAAGGGATATTTGATCATTTTGAACAAATGAAAAAGTGCAACCCAGCACGATAG
GGCACGATTCGCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAAGGGATTTCTTAAAAAAC
AT
Found at i:87556884 original size:2 final size:2
Alignment explanation
Indices: 87556877--87556903 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
87556867 AGTATACGTG
87556877 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
87556904 TAACATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:87557015 original size:2 final size:2
Alignment explanation
Indices: 87557008--87557040 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
87556998 GCACATGCAA
87557008 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87557041 GAAATACATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:87561394 original size:17 final size:16
Alignment explanation
Indices: 87561372--87561413 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
87561362 ATCAGACACT
87561372 TATCCATCTATATGTCA
1 TATCCATCTATAT-TCA
*
87561389 TATCCATCGTTTATTCA
1 TATCCATC-TATATTCA
87561406 T-TCCATCT
1 TATCCATCT
87561414 GCCACTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 1 0.04
16 6 0.26
17 12 0.52
18 4 0.17
ACGTcount: A:0.24, C:0.26, G:0.05, T:0.45
Consensus pattern (16 bp):
TATCCATCTATATTCA
Found at i:87563145 original size:18 final size:17
Alignment explanation
Indices: 87563122--87563160 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
87563112 GGACCAAAAT
87563122 CCCATATACCTATGTGG
1 CCCATATACCTATGTGG
* *
87563139 ACCCATATGCCTGTGTGG
1 -CCCATATACCTATGTGG
87563157 CCCA
1 CCCA
87563161 CATGGCCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.26
Consensus pattern (17 bp):
CCCATATACCTATGTGG
Found at i:87565586 original size:35 final size:35
Alignment explanation
Indices: 87565536--87565606 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
87565526 ATCCGAAGTT
* * * *
87565536 AACTGATGCTTAGTCTTAACTTGCTGGTACGTCAG
1 AACTGATGCTCAGTCTTAACCTACTGGTACATCAG
87565571 AACTGATGCTCAGTCTTAACCTACTGGTACATCAG
1 AACTGATGCTCAGTCTTAACCTACTGGTACATCAG
87565606 A
1 A
87565607 CATCTCACCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (35 bp):
AACTGATGCTCAGTCTTAACCTACTGGTACATCAG
Found at i:87570346 original size:41 final size:40
Alignment explanation
Indices: 87570169--87570351 Score: 181
Period size: 40 Copynumber: 4.5 Consensus size: 40
87570159 AAGTAGGGCT
* *
87570169 TTAGCGGCGTTTTATCAAAAGACGCCGC-AAAAATTGTACA
1 TTAGCGGCGTTTTATCAAAA-ACGCCGCTAAAAATAGAACA
* * *
87570209 TTAGCGGCGTTTTAGCAAAAACGCTGCTAAAAATAGAGCAA
1 TTAGCGGCGTTTTATCAAAAACGCCGCTAAAAATAGAAC-A
* * * * *
87570250 TAATGGCAGCATTTTTACCAAAAACGCCGCTAAAAATAGAGCA
1 T--TAGCGGC-GTTTTATCAAAAACGCCGCTAAAAATAGAACA
* * *
87570293 ATAGTGGTGTTTTATCAAAAACGCCGCTAAAAAATAGAACA
1 TTAGCGGCGTTTTATCAAAAACGCCGCT-AAAAATAGAACA
87570334 TTAGCGGCGTTTTA-CAAA
1 TTAGCGGCGTTTTATCAAA
87570352 CCAGAGCAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 6 0.05
40 49 0.42
41 27 0.23
43 6 0.05
44 28 0.24
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (40 bp):
TTAGCGGCGTTTTATCAAAAACGCCGCTAAAAATAGAACA
Found at i:87570539 original size:39 final size:38
Alignment explanation
Indices: 87570450--87570544 Score: 109
Period size: 38 Copynumber: 2.4 Consensus size: 38
87570440 TAACCCCTAA
* * *
87570450 AACCCTAAACCCCTCAAAAAATCATAAACACTAATCTAT
1 AACCCTAAAACCCT-AAAAAACCATAAACACTAAACTAT
* * *
87570489 GACCCTTAAACCCTAAAAAACCTTAAACACTAAACTAT
1 AACCCTAAAACCCTAAAAAACCATAAACACTAAACTAT
*
87570527 AACCCATAAAACCTTAAA
1 AACCC-TAAAACCCTAAA
87570545 CCTCAAAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
38 25 0.54
39 21 0.46
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.20
Consensus pattern (38 bp):
AACCCTAAAACCCTAAAAAACCATAAACACTAAACTAT
Found at i:87570666 original size:7 final size:7
Alignment explanation
Indices: 87570654--87570722 Score: 57
Period size: 7 Copynumber: 9.7 Consensus size: 7
87570644 TTAAATTTAT
*
87570654 TTTAGGG
1 TTTAAGG
*
87570661 TTTAGGG
1 TTTAAGG
**
87570668 TTTAATA
1 TTTAAGG
87570675 TTTAAGG
1 TTTAAGG
87570682 TTTAAGG
1 TTTAAGG
* *
87570689 TCTATGG
1 TTTAAGG
*
87570696 TTTAGGG
1 TTTAAGG
*
87570703 TTTTATGG
1 -TTTAAGG
87570711 TTTAAGG
1 TTTAAGG
87570718 TTTAA
1 TTTAA
87570723 TGGTCATAGG
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
7 44 0.88
8 6 0.12
ACGTcount: A:0.23, C:0.01, G:0.28, T:0.48
Consensus pattern (7 bp):
TTTAAGG
Found at i:87570711 original size:15 final size:15
Alignment explanation
Indices: 87570675--87570726 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
87570665 GGGTTTAATA
*
87570675 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
87570689 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
87570704 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
87570719 TTAATGGT
1 TTTATGGT
87570727 CATAGGTATA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
14 11 0.35
15 20 0.65
ACGTcount: A:0.21, C:0.02, G:0.29, T:0.48
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:87571068 original size:7 final size:7
Alignment explanation
Indices: 87571038--87571197 Score: 54
Period size: 7 Copynumber: 21.9 Consensus size: 7
87571028 GGTAGAAGTC
87571038 TAGGGTT
1 TAGGGTT
* *
87571045 TATGTTT
1 TAGGGTT
* *
87571052 TATGGCT
1 TAGGGTT
87571059 TAGGGTT
1 TAGGGTT
87571066 TAGGGGTT
1 TA-GGGTT
* *
87571074 AAGAGTT
1 TAGGGTT
* *
87571081 AAAGGTT
1 TAGGGTT
*
87571088 TATAGGTT
1 TA-GGGTT
87571096 ATAGGGTT
1 -TAGGGTT
87571104 TAGGGTT
1 TAGGGTT
* *
87571111 TAAGATT
1 TAGGGTT
87571118 TA-GGTAT
1 TAGGGT-T
87571125 GTAGGGGTTT
1 -TA-GGG-TT
87571135 TAGGGTT
1 TAGGGTT
* **
87571142 AAGGGGA
1 TAGGGTT
*
87571149 CATGGGTT
1 TA-GGGTT
*
87571157 AAGGGTT
1 TAGGGTT
*
87571164 AAGGGTT
1 TAGGGTT
* *
87571171 AAGAG-T
1 TAGGGTT
87571177 TAGGGGTT
1 TA-GGGTT
87571185 TAGGGTT
1 TAGGGTT
87571192 TAGGGT
1 TAGGGT
87571198 AATTAGTGTG
Statistics
Matches: 117, Mismatches: 25, Indels: 22
0.71 0.15 0.13
Matches are distributed among these distances:
6 4 0.03
7 78 0.67
8 27 0.23
9 4 0.03
10 3 0.03
11 1 0.01
ACGTcount: A:0.23, C:0.01, G:0.38, T:0.38
Consensus pattern (7 bp):
TAGGGTT
Found at i:87571139 original size:38 final size:38
Alignment explanation
Indices: 87571058--87571147 Score: 94
Period size: 38 Copynumber: 2.4 Consensus size: 38
87571048 GTTTTATGGC
*
87571058 TTAGGGTTTAGGGGTTAAGAGTTAAAGGTTTATAGGTT
1 TTAGGGTTTAGGGGTTAAGAGTTAAAGGTTTAGAGGTT
* * * *
87571096 ATAGGGTTTAGGGTTTAAGA-TT-TAGGTATGTAGGGGTT
1 TTAGGGTTTAGGGGTTAAGAGTTAAAGGT-T-TAGAGGTT
*
87571134 TTAGGGTTAAGGGG
1 TTAGGGTTTAGGGG
87571148 ACATGGGTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
36 4 0.10
37 3 0.07
38 35 0.83
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (38 bp):
TTAGGGTTTAGGGGTTAAGAGTTAAAGGTTTAGAGGTT
Found at i:87571413 original size:27 final size:28
Alignment explanation
Indices: 87571383--87571447 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 28
87571373 AAATATTAGT
87571383 TAAATTTTAAAAAATTAT-TTATTTAAA
1 TAAATTTTAAAAAATTATATTATTTAAA
** *
87571410 TAAAAAATT--AAAATTCTATTATTTAAA
1 T-AAATTTTAAAAAATTATATTATTTAAA
*
87571437 TTAATTTTAAA
1 TAAATTTTAAA
87571448 GTTTTTTGGG
Statistics
Matches: 28, Mismatches: 6, Indels: 7
0.68 0.15 0.17
Matches are distributed among these distances:
26 11 0.39
27 11 0.39
28 6 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (28 bp):
TAAATTTTAAAAAATTATATTATTTAAA
Found at i:87576599 original size:43 final size:44
Alignment explanation
Indices: 87576547--87576629 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 44
87576537 TTAAAATTTA
* *
87576547 ATGACCTTTAGCGACGTTTGTTGG-AAAAGCGCCGTTAAAGGGT
1 ATGACCTTTAGCGACGTTTGTGGGAAAAAGCGCCGCTAAAGGGT
* **
87576590 ATGACCTTTAGTGGTGTTTGTGGGAAAAAGCGCCGCTAAA
1 ATGACCTTTAGCGACGTTTGTGGGAAAAAGCGCCGCTAAA
87576630 AGTCAATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 20 0.59
44 14 0.41
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (44 bp):
ATGACCTTTAGCGACGTTTGTGGGAAAAAGCGCCGCTAAAGGGT
Found at i:87577504 original size:14 final size:14
Alignment explanation
Indices: 87577485--87577512 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
87577475 AAAGAGTCTC
87577485 GATCCTAGCTAAAT
1 GATCCTAGCTAAAT
87577499 GATCCTAGCTAAAT
1 GATCCTAGCTAAAT
87577513 AATAACCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
GATCCTAGCTAAAT
Found at i:87583340 original size:74 final size:75
Alignment explanation
Indices: 87583249--87583398 Score: 239
Period size: 75 Copynumber: 2.0 Consensus size: 75
87583239 ACTCGTAAAT
* * * **
87583249 TCACTTTATTTAG-AAAAAAGGATATCTCCAAATTTATTTGATTAGTGGTTTATTCATCGTGTTG
1 TCACTTTATTTAGAAAAAAAGGATATCTCCAAATTAATTTGATCAGTGATTTATTCATCGCCTTG
87583313 GATGCTTGTG
66 GATGCTTGTG
*
87583323 TCACTTTATTTAGAAAAAAAGGGTATCTCCAAATTAATTTGATCAGTGATTTATTCATCGCCTTG
1 TCACTTTATTTAGAAAAAAAGGATATCTCCAAATTAATTTGATCAGTGATTTATTCATCGCCTTG
87583388 GATGCTTGTG
66 GATGCTTGTG
87583398 T
1 T
87583399 GTAATGAAAG
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
74 13 0.19
75 56 0.81
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (75 bp):
TCACTTTATTTAGAAAAAAAGGATATCTCCAAATTAATTTGATCAGTGATTTATTCATCGCCTTG
GATGCTTGTG
Found at i:87587382 original size:24 final size:25
Alignment explanation
Indices: 87587355--87587401 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
87587345 AAACTACATT
87587355 ATAAATAT-ATAATTTTTTTAAAAA
1 ATAAATATGATAATTTTTTTAAAAA
* *
87587379 ATAAATTTGTTAATTTTTTTAAA
1 ATAAATATGATAATTTTTTTAAA
87587402 TTTGTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
ATAAATATGATAATTTTTTTAAAAA
Found at i:87587443 original size:20 final size:20
Alignment explanation
Indices: 87587418--87587484 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
87587408 ATAAATAATA
87587418 AAATTATTAAAAATTGTTAG
1 AAATTATTAAAAATTGTTAG
* * * *
87587438 AAATTACTAAATATTTGTAAA
1 AAATTATTAAA-AATTGTTAG
* * *
87587459 AAATTATAAAAAAATATTAG
1 AAATTATTAAAAATTGTTAG
87587479 AAATTA
1 AAATTA
87587485 AAAAATACGA
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
20 20 0.57
21 15 0.43
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (20 bp):
AAATTATTAAAAATTGTTAG
Found at i:87587517 original size:19 final size:19
Alignment explanation
Indices: 87587457--87587519 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
87587447 AATATTTGTA
**
87587457 AAAAATTATAAAAAAATATT
1 AAAAATTA-AAAAAAACGTT
* * *
87587477 AGAAATTAAAAAATACGAT
1 AAAAATTAAAAAAAACGTT
*
87587496 AAAAATTAAAAAAAAGGTT
1 AAAAATTAAAAAAAACGTT
87587515 AAAAA
1 AAAAA
87587520 CTAGTAAAGA
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
19 27 0.79
20 7 0.21
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (19 bp):
AAAAATTAAAAAAAACGTT
Found at i:87598200 original size:26 final size:26
Alignment explanation
Indices: 87598156--87598265 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
87598146 TGATACAAAT
*
87598156 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87598182 TGACAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87598208 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87598234 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87598260 TGATAA
1 TGATAA
87598266 GAATATCATG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87598218 original size:52 final size:52
Alignment explanation
Indices: 87598156--87598265 Score: 211
Period size: 52 Copynumber: 2.1 Consensus size: 52
87598146 TGATACAAAT
87598156 TGATAATAGGTTAGGTAAATGTTCCATGACAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGACAATGGGTTAGGTAAATGTTTCA
*
87598208 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGACAATGGGTTAGGTAAATGTTTCA
87598260 TGATAA
1 TGATAA
87598266 GAATATCATG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGACAATGGGTTAGGTAAATGTTTCA
Found at i:87602630 original size:126 final size:127
Alignment explanation
Indices: 87602402--87602686 Score: 360
Period size: 126 Copynumber: 2.3 Consensus size: 127
87602392 CCTTAAAACG
* * * * **
87602402 AAGGCAATGTT-GATGTTTGGAAATTCAGGAAATCGTGCCTTATCATGTTGGGTTTTGATTTCCC
1 AAGGCAATGTTCAATGTTTGGAAATTCAGGAAATCATGCCCTATCATGCTGGGTTTCAATTTCCC
* * *
87602466 GTTTGTCCAAAATAATCAAATATTCCTTTAGAATTTCACTCGTGTTTTTCAAATTCT-GAGAC
66 GTTTGTCCAAAATAATCAAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAAG-C
* * **
87602528 AATGCAATGTTCAATGTTTGGAAATTC-GGGAATCATGCCCTATCATGCTGGGTTTCAATTTCTG
1 AAGGCAATGTTCAATGTTTGGAAATTCAGGAAATCATGCCCTATCATGCTGGGTTTCAATTTCCC
* **
87602592 GTTTGTTCAAAATAATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAAGC
66 GTTTGTCCAAAATAATCAAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAAGC
* * *
87602654 AAGGTAATATTCAATGTTTGGAAGTTTCAGGAA
1 AAGGCAATGTTCAATGTTTGGAA-ATTCAGGAA
87602687 TCGTGCTCTA
Statistics
Matches: 134, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
126 112 0.84
127 19 0.14
128 3 0.02
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (127 bp):
AAGGCAATGTTCAATGTTTGGAAATTCAGGAAATCATGCCCTATCATGCTGGGTTTCAATTTCCC
GTTTGTCCAAAATAATCAAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAAGC
Found at i:87602731 original size:126 final size:126
Alignment explanation
Indices: 87602414--87602735 Score: 317
Period size: 126 Copynumber: 2.5 Consensus size: 126
87602404 GGCAATGTTG
* * * * ** * **
87602414 ATGTTTGGAAATTCAGGAAATCGTGCCTTATCATGTTGGGTTTTGATTTCCCGTTTGTCCAAAAT
1 ATGTTTGGAAATTCAGG-AATCATGCCCTATCATGCTAGGTTTCAATTTCTCGTTTGGACAAAAT
** * * * * *
87602479 AATCAAATATTCCTTTAGAATTTCACTCGTGTTTTTCAAATTCTGAGACAATGCAATGTTCA
65 AATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAGACAAGGCAATATTCA
* * * **
87602541 ATGTTTGGAAATTCGGGAATCATGCCCTATCATGCTGGGTTTCAATTTCTGGTTTGTTCAAAATA
1 ATGTTTGGAAATTCAGGAATCATGCCCTATCATGCTAGGTTTCAATTTCTCGTTTGGACAAAATA
*
87602606 ATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAA-AGCAAGGTAATATTCA
66 ATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAGA-CAAGGCAATATTCA
* * * * * * * *
87602667 ATGTTTGGAAGTTTCAGGAATCGTGCTCTA-CTGTGTTAGGTTTCAGTTTTTCG-TTGGACTAAA
1 ATGTTTGGAA-ATTCAGGAATCATGCCCTATC-ATGCTAGGTTTCAATTTCTCGTTTGGACAAAA
87602730 TAATTG
64 TAATTG
87602736 GGCATCATTT
Statistics
Matches: 162, Mismatches: 30, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
125 1 0.01
126 115 0.71
127 46 0.28
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.39
Consensus pattern (126 bp):
ATGTTTGGAAATTCAGGAATCATGCCCTATCATGCTAGGTTTCAATTTCTCGTTTGGACAAAATA
ATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAGACAAGGCAATATTCA
Found at i:87608539 original size:17 final size:17
Alignment explanation
Indices: 87608517--87608594 Score: 65
Period size: 16 Copynumber: 4.5 Consensus size: 17
87608507 ATATTACAAA
87608517 ATTATTTTATTATAAGT
1 ATTATTTTATTATAAGT
87608534 ATTATTTTAATTAT-A-T
1 ATTATTTT-ATTATAAGT
*
87608550 ATTATTATTACTTATTACGT
1 ATTATT-TTA-TTA-TAAGT
*
87608570 ATTATTTT-TCT-TAAAT
1 ATTATTTTAT-TATAAGT
87608586 ATTATTTTA
1 ATTATTTTA
87608595 CATCTCTTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 16
0.72 0.04 0.23
Matches are distributed among these distances:
16 19 0.38
17 15 0.30
18 7 0.14
19 2 0.04
20 7 0.14
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (17 bp):
ATTATTTTATTATAAGT
Found at i:87608572 original size:36 final size:34
Alignment explanation
Indices: 87608498--87608595 Score: 99
Period size: 36 Copynumber: 2.8 Consensus size: 34
87608488 ATTTTACTTT
* *
87608498 TATTATTATATATTACAAAATTATTTTA-TTATAAG
1 TATTATTTTA-ATTA-AATATTATTTTACTTATAAG
* *
87608533 TATTATTTTAATTATATATTATTATTACTTATTACG
1 TATTATTTTAATTAAATATTATT-TTACTTA-TAAG
**
87608569 TATTATTTTTCTTAAATATTATTTTAC
1 TATTATTTTAATTAAATATTATTTTAC
87608596 ATCTCTTTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
33 7 0.13
34 7 0.13
35 16 0.30
36 23 0.43
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (34 bp):
TATTATTTTAATTAAATATTATTTTACTTATAAG
Found at i:87608642 original size:16 final size:15
Alignment explanation
Indices: 87608602--87608649 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 15
87608592 TTACATCTCT
87608602 TTTATATATTATTATA
1 TTTATATATTATT-TA
87608618 TTTCAATATATTATTTA
1 TTT--ATATATTATTTA
87608635 TTATATATATTATTT
1 TT-TATATATTATTT
87608650 TATATGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 14 0.48
17 4 0.14
18 11 0.38
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTATATATTATTTA
Found at i:87608709 original size:23 final size:23
Alignment explanation
Indices: 87608661--87608709 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
87608651 ATATGTTTTT
* * *
87608661 TATGTTATATCTATATTTTCTTA
1 TATGTTATATCTACATTTTATCA
87608684 TATGTTCATAT-TACATTTTATCA
1 TATGTT-ATATCTACATTTTATCA
87608707 TAT
1 TAT
87608710 AGTCTTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.57
Consensus pattern (23 bp):
TATGTTATATCTACATTTTATCA
Found at i:87608739 original size:18 final size:19
Alignment explanation
Indices: 87608716--87608761 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
87608706 ATATAGTCTT
87608716 TATTATGTT-TTATTTTTA
1 TATTATGTTCTTATTTTTA
* *
87608734 TATTAT-TTCTTGTTTTTT
1 TATTATGTTCTTATTTTTA
87608752 TATATATGTT
1 TAT-TATGTT
87608762 ATGTATATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.09
18 16 0.70
19 3 0.13
20 2 0.09
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.72
Consensus pattern (19 bp):
TATTATGTTCTTATTTTTA
Found at i:87610900 original size:23 final size:24
Alignment explanation
Indices: 87610873--87610920 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
87610863 CGTATATTTA
*
87610873 TTAAAAGTTTATAT-AAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
87610896 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
87610920 T
1 T
87610921 GTTATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:87611256 original size:7 final size:7
Alignment explanation
Indices: 87611197--87611257 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
87611187 GAGTTACTAT
*
87611197 TTTAAGG
1 TTTATGG
87611204 TTTATGG
1 TTTATGG
*
87611211 ATTATGG
1 TTTATGG
*
87611218 ATTATAGG
1 TTTAT-GG
87611226 TTTATGG
1 TTTATGG
* *
87611233 ATTATGA
1 TTTATGG
**
87611240 TTTACAG
1 TTTATGG
87611247 TTTATGG
1 TTTATGG
87611254 TTTA
1 TTTA
87611258 AGGGTTGGGG
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
7 36 0.86
8 6 0.14
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (7 bp):
TTTATGG
Found at i:87611270 original size:21 final size:22
Alignment explanation
Indices: 87611246--87611316 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 22
87611236 ATGATTTACA
*
87611246 GTTTATGGTTTAAGG-GTT-GGG
1 GTTTAAGGTTT-AGGTGTTAGGG
87611267 GTTTAAGGTTTAGGTGTTAGGG
1 GTTTAAGGTTTAGGTGTTAGGG
* * * *
87611289 G-TTAGGGGTTATG-GTTATGG
1 GTTTAAGGTTTAGGTGTTAGGG
87611309 GTTTAAGG
1 GTTTAAGG
87611317 GTTATGTTGT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
20 10 0.24
21 27 0.66
22 4 0.10
ACGTcount: A:0.17, C:0.00, G:0.42, T:0.41
Consensus pattern (22 bp):
GTTTAAGGTTTAGGTGTTAGGG
Found at i:87611271 original size:28 final size:28
Alignment explanation
Indices: 87611240--87611320 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 28
87611230 TGGATTATGA
87611240 TTTACAGTTTATGGTTTAAGGGTT-GGGG
1 TTTA-AGTTTATGGTTTAAGGGTTAGGGG
*
87611268 TTTAAGGTTTA-GGTGTTAGGGGTTAGGGG
1 TTTAA-GTTTATGGT-TTAAGGGTTAGGGG
* *
87611297 -TTATGGTTATGGGTTTAAGGGTTA
1 TTTAAGTTTAT-GGTTTAAGGGTTA
87611321 TGTTGTATGA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
27 8 0.18
28 29 0.66
29 7 0.16
ACGTcount: A:0.19, C:0.01, G:0.38, T:0.42
Consensus pattern (28 bp):
TTTAAGTTTATGGTTTAAGGGTTAGGGG
Found at i:87611320 original size:21 final size:21
Alignment explanation
Indices: 87611265--87611323 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
87611255 TTAAGGGTTG
* *
87611265 GGGTTTAAGGTTTAGGTGTTA
1 GGGTTTAAGGGTTATGTGTTA
* *
87611286 GGGGTTAGGGGTTATG-GTTA
1 GGGTTTAAGGGTTATGTGTTA
87611306 TGGGTTTAAGGGTTATGT
1 -GGGTTTAAGGGTTATGT
87611324 TGTATGATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.17, C:0.00, G:0.42, T:0.41
Consensus pattern (21 bp):
GGGTTTAAGGGTTATGTGTTA
Found at i:87611696 original size:22 final size:23
Alignment explanation
Indices: 87611671--87611734 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
87611661 AATTTTTTAA
*
87611671 AAAAATTATTTAAAATT-AATAT
1 AAAAATTATTAAAAATTCAATAT
87611693 AAAAGA-TA-TAAAAATTCAATAT
1 AAAA-ATTATTAAAAATTCAATAT
* *
87611715 AAAAATTATAAAAAAGTCAA
1 AAAAATTATTAAAAATTCAA
87611735 ACATTAGCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
21 8 0.23
22 17 0.49
23 10 0.29
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (23 bp):
AAAAATTATTAAAAATTCAATAT
Found at i:87611769 original size:39 final size:39
Alignment explanation
Indices: 87611726--87611847 Score: 172
Period size: 39 Copynumber: 3.1 Consensus size: 39
87611716 AAAATTATAA
* *
87611726 AAAAGTCAAACATTAGCGGCGTTTATATAAAAACGCCGC
1 AAAAGACAAACAATAGCGGCGTTTATATAAAAACGCCGC
*
87611765 AAAAGACAAGCAATAGCGGCGTTTATATAAAAACGCCGC
1 AAAAGACAAACAATAGCGGCGTTTATATAAAAACGCCGC
* * **
87611804 AAAAGGCAATCAATAGTAGCGTTTATGATAAAAACGCCGC
1 AAAAGACAAACAATAGCGGCGTTTAT-ATAAAAACGCCGC
87611844 AAAA
1 AAAA
87611848 AGTAATTTAT
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
39 58 0.77
40 17 0.23
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.18
Consensus pattern (39 bp):
AAAAGACAAACAATAGCGGCGTTTATATAAAAACGCCGC
Found at i:87614982 original size:33 final size:33
Alignment explanation
Indices: 87614935--87615001 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
87614925 ATCCTTTGGA
*
87614935 TCTCTTTGCTACTAGTTCCAATGCGTATCTTCT
1 TCTCATTGCTACTAGTTCCAATGCGTATCTTCT
*
87614968 TCTCATTGCTACTAGTTCCAATGCGTATGTTCT
1 TCTCATTGCTACTAGTTCCAATGCGTATCTTCT
87615001 T
1 T
87615002 AAGTATGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.16, C:0.25, G:0.13, T:0.45
Consensus pattern (33 bp):
TCTCATTGCTACTAGTTCCAATGCGTATCTTCT
Found at i:87615450 original size:241 final size:241
Alignment explanation
Indices: 87615026--87615460 Score: 834
Period size: 241 Copynumber: 1.8 Consensus size: 241
87615016 ATGAATTAAT
87615026 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
1 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
87615091 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
* *
87615156 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATCATGAATCTTAAAAAATTC
87615221 AAAAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATA
* *
87615267 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGTTGACCTTCTCTCCAACATT
1 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
87615332 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
87615397 CTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATCATGAATCTTAAAAAATT
131 CTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATCATGAATCTTAAAAAATT
87615461 ACTATATTCA
Statistics
Matches: 190, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 190 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.33
Consensus pattern (241 bp):
TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATCATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATA
Found at i:87615603 original size:9 final size:9
Alignment explanation
Indices: 87615580--87615707 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
87615570 ATTGATCATT
*
87615580 ACTTAAATA
1 ACTTACATA
*
87615589 AATTACATA
1 ACTTACATA
87615598 ACTTACATA
1 ACTTACATA
* *
87615607 ACTCATATA
1 ACTTACATA
87615616 ACTTACATA
1 ACTTACATA
*
87615625 ATTTACATAACA
1 ACTTACAT---A
87615637 ACTTACATA
1 ACTTACATA
*
87615646 ACTCACATA
1 ACTTACATA
87615655 ACTTACATA
1 ACTTACATA
*
87615664 ATTTACATA
1 ACTTACATA
*
87615673 ACTCACATA
1 ACTTACATA
*
87615682 ACGTACATAACA
1 ACTTACAT---A
87615694 ACTTACATA
1 ACTTACATA
87615703 ACTTA
1 ACTTA
87615708 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:87615649 original size:39 final size:39
Alignment explanation
Indices: 87615597--87615674 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
87615587 TAAATTACAT
*
87615597 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
87615636 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
87615675 TCACATAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:87615674 original size:57 final size:57
Alignment explanation
Indices: 87615593--87615705 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
87615583 TAAATAAATT
* * **
87615593 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
87615650 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
87615706 TAACTAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:87621829 original size:72 final size:72
Alignment explanation
Indices: 87621738--87621874 Score: 213
Period size: 72 Copynumber: 1.9 Consensus size: 72
87621728 AGCGCCGCTA
* *
87621738 AAAGCCTTGACCTTTAGCGGCACTTTTCCCGCAAACGCCGCTCAAAA-CCTTGACCTTTAGCGGC
1 AAAGCCCTGACCTTTAGCGGCACTTTTCCCACAAACGCCGCT-AAAAGCCTTGACCTTTAGCGGC
87621802 GTTTGTGG
65 GTTTGTGG
** *
87621810 AAAGCCCTGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTTGCGGCG
1 AAAGCCCTGACCTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCG
87621875 CTTTTCCAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
71 4 0.07
72 55 0.93
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAGCCCTGACCTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCG
TTTGTGG
Found at i:87621873 original size:43 final size:43
Alignment explanation
Indices: 87621810--87621965 Score: 249
Period size: 43 Copynumber: 3.6 Consensus size: 43
87621800 GCGTTTGTGG
*
87621810 AAAGCCCTGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTA
1 AAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTA
* * * *
87621853 AAAGCCTTGACCTTTTGCGGCGCTTTTCCAATAAACGCCGCTA
1 AAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTA
*
87621896 AAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAACGCCGTTA
1 AAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTA
*
87621939 AAAGCCTTGACCTTTAGCGGCTTTTTT
1 AAAGCCTTGACCTTTAGCGGCGTTTTT
87621966 TCCAAAAAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (43 bp):
AAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTA
Found at i:87624012 original size:11 final size:11
Alignment explanation
Indices: 87623985--87624027 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
87623975 TGACCTTTCC
87623985 AAGGTATGGG-
1 AAGGTATGGGA
*
87623995 TAGGTATGGGA
1 AAGGTATGGGA
*
87624006 AAGGTATGGGC
1 AAGGTATGGGA
87624017 AAGGTATGGGA
1 AAGGTATGGGA
87624028 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:87624024 original size:22 final size:21
Alignment explanation
Indices: 87623985--87624027 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
87623975 TGACCTTTCC
*
87623985 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
87624006 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
87624028 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:87628144 original size:18 final size:17
Alignment explanation
Indices: 87628070--87628144 Score: 78
Period size: 18 Copynumber: 4.2 Consensus size: 17
87628060 CCCAGCTACT
* *
87628070 GTATACGTGAACAGTAC
1 GTATACGTAAATAGTAC
*
87628087 TATATACGTAAATAGTAC
1 -GTATACGTAAATAGTAC
*
87628105 AGTATACATAAATAGTACC
1 -GTATACGTAAATAGTA-C
87628124 GTATACGTAAATAGTATC
1 GTATACGTAAATAGTA-C
87628142 GTA
1 GTA
87628145 AACGGTCGTA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
18 47 0.98
19 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.29
Consensus pattern (17 bp):
GTATACGTAAATAGTAC
Found at i:87628703 original size:11 final size:11
Alignment explanation
Indices: 87628676--87628718 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
87628666 TGACCTTTCC
87628676 AAGGTATGGG-
1 AAGGTATGGGA
*
87628686 TAGGTATGGGA
1 AAGGTATGGGA
*
87628697 AAGGTATGGGC
1 AAGGTATGGGA
87628708 AAGGTATGGGA
1 AAGGTATGGGA
87628719 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:87628715 original size:22 final size:21
Alignment explanation
Indices: 87628676--87628718 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
87628666 TGACCTTTCC
*
87628676 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
87628697 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
87628719 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:87629188 original size:11 final size:11
Alignment explanation
Indices: 87629172--87629214 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
87629162 TAGAATATAT
87629172 CCCATACCTTG
1 CCCATACCTTG
*
87629183 CCCATACCTTT
1 CCCATACCTTG
*
87629194 CCCATACC-TA
1 CCCATACCTTG
87629204 CCCATACCTTG
1 CCCATACCTTG
87629215 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:87629199 original size:22 final size:21
Alignment explanation
Indices: 87629171--87629213 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
87629161 TTAGAATATA
*
87629171 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
87629193 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
87629214 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:87634773 original size:20 final size:21
Alignment explanation
Indices: 87634748--87634790 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
87634738 TAATCAAAGA
87634748 TTAAAAAATAAAACCAAT-TT
1 TTAAAAAATAAAACCAATATT
87634768 TTAAAAAATAAAACCAATATT
1 TTAAAAAATAAAACCAATATT
87634789 TT
1 TT
87634791 TACAAAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (21 bp):
TTAAAAAATAAAACCAATATT
Done.