Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 306 of 335
Found at i:90812941 original size:2 final size:2
Alignment explanation
Indices: 90812934--90812958 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
90812924 TCATCATGTC
90812934 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
90812959 CTTACCTCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90820696 original size:2 final size:2
Alignment explanation
Indices: 90820689--90820719 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
90820679 TCATCATGTC
*
90820689 AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
90820720 CTTACCTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:90827354 original size:18 final size:18
Alignment explanation
Indices: 90827320--90827354 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
90827310 AATTAAGAGT
* *
90827320 TATTTTTTTAATTTAATG
1 TATTTTTTAAATATAATG
90827338 TATTTTTTAAATATAAT
1 TATTTTTTAAATATAAT
90827355 TATCTTATTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
TATTTTTTAAATATAATG
Found at i:90828815 original size:21 final size:21
Alignment explanation
Indices: 90828791--90828831 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
90828781 TAGTTTGTAA
* *
90828791 TATATTATATTATGTTATTTT
1 TATATAATATTATGTAATTTT
90828812 TATATAATATTATGTAATTT
1 TATATAATATTATGTAATTT
90828832 ATAACATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (21 bp):
TATATAATATTATGTAATTTT
Found at i:90831010 original size:47 final size:47
Alignment explanation
Indices: 90830957--90831054 Score: 178
Period size: 47 Copynumber: 2.1 Consensus size: 47
90830947 AAATAATACC
* *
90830957 TAATTAAACTTGATTTAAATTACATATATTATGTATATGAGAGTGGA
1 TAATTAAACTTAATTTAAATTACATATATTATGTATATGAGAGTGAA
90831004 TAATTAAACTTAATTTAAATTACATATATTATGTATATGAGAGTGAA
1 TAATTAAACTTAATTTAAATTACATATATTATGTATATGAGAGTGAA
90831051 TAAT
1 TAAT
90831055 GATACATTAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (47 bp):
TAATTAAACTTAATTTAAATTACATATATTATGTATATGAGAGTGAA
Found at i:90831398 original size:29 final size:32
Alignment explanation
Indices: 90831338--90831403 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
90831328 TATACTATAA
* *
90831338 AATATTTATTATTAAATATTTATCAATTGTAAT
1 AATATTTATTATTAAATA-TTATAAATCGTAAT
90831371 AATATTTATTATTAAA-A-TA-AAATCGTAAT
1 AATATTTATTATTAAATATTATAAATCGTAAT
90831400 AATA
1 AATA
90831404 AATGATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 12 0.39
30 2 0.06
32 1 0.03
33 16 0.52
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (32 bp):
AATATTTATTATTAAATATTATAAATCGTAAT
Found at i:90831518 original size:8 final size:8
Alignment explanation
Indices: 90831505--90831537 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
90831495 TTCAACATTA
90831505 TAATATTT
1 TAATATTT
90831513 TAATA--T
1 TAATATTT
90831519 TAATATTT
1 TAATATTT
90831527 TAATATTT
1 TAATATTT
90831535 TAA
1 TAA
90831538 AAATTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.26
8 17 0.74
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TAATATTT
Found at i:90831524 original size:14 final size:14
Alignment explanation
Indices: 90831505--90831533 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
90831495 TTCAACATTA
90831505 TAATATTTTAATAT
1 TAATATTTTAATAT
90831519 TAATATTTTAATAT
1 TAATATTTTAATAT
90831533 T
1 T
90831534 TTAAAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TAATATTTTAATAT
Found at i:90831707 original size:26 final size:27
Alignment explanation
Indices: 90831671--90831721 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
90831661 GGTTTACCCT
90831671 TGATGCAGAAAAGTATTA-TGAAAAAG
1 TGATGCAGAAAAGTATTATTGAAAAAG
* *
90831697 TGATTCAGAAAAGTGTTATTGAAAA
1 TGATGCAGAAAAGTATTATTGAAAA
90831722 TTTTGATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.47, C:0.04, G:0.22, T:0.27
Consensus pattern (27 bp):
TGATGCAGAAAAGTATTATTGAAAAAG
Found at i:90841219 original size:3 final size:3
Alignment explanation
Indices: 90841200--90841251 Score: 68
Period size: 3 Copynumber: 17.0 Consensus size: 3
90841190 AATATACTCG
* * *
90841200 TAA TAA CAA TAAA TAA TAA TAA TAC TAA TAA TAA CAA TAA TAA TAA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
90841246 TAA TAA
1 TAA TAA
90841252 GTTAAGTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:90841454 original size:3 final size:3
Alignment explanation
Indices: 90841448--90841507 Score: 111
Period size: 3 Copynumber: 19.7 Consensus size: 3
90841438 GTAATAGGGT
90841448 ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
90841494 ATA ATA ATA ATA AT
1 ATA ATA ATA ATA AT
90841508 GGATATAGTG
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 53 0.95
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:90841969 original size:18 final size:19
Alignment explanation
Indices: 90841941--90841984 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
90841931 ATAGTAGAGT
90841941 ATAATAATAAAATAAATTA
1 ATAATAATAAAATAAATTA
* *
90841960 ATAA-AATAAATTAATTTA
1 ATAATAATAAAATAAATTA
90841978 ATAATAA
1 ATAATAA
90841985 AGGAGTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATAATAATAAAATAAATTA
Found at i:90841981 original size:13 final size:13
Alignment explanation
Indices: 90841945--90841974 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
90841935 TAGAGTATAA
90841945 TAATAAAATAAAT
1 TAATAAAATAAAT
90841958 TAATAAAATAAAT
1 TAATAAAATAAAT
90841971 TAAT
1 TAAT
90841975 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
TAATAAAATAAAT
Found at i:90842553 original size:15 final size:15
Alignment explanation
Indices: 90842533--90842566 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
90842523 AGGGTGCCTT
*
90842533 TTTTCTTTTTTAGTA
1 TTTTCTTTATTAGTA
*
90842548 TTTTCTTTATTATTA
1 TTTTCTTTATTAGTA
90842563 TTTT
1 TTTT
90842567 TATATATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTTCTTTATTAGTA
Found at i:90843951 original size:40 final size:40
Alignment explanation
Indices: 90843893--90843969 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
90843883 ACACACCATG
90843893 TGGGGATAGAATCGACCCA-CTCAACCCTACACACCAAGCA
1 TGGGGATAGAATCGACCCATC-CAACCCTACACACCAAGCA
*
90843933 TGGGGATATAAT-GAACCCATCCAACCCTACACACCAA
1 TGGGGATAGAATCG-ACCCATCCAACCCTACACACCAA
90843970 AAGGTACCGT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
39 1 0.03
40 32 0.94
41 1 0.03
ACGTcount: A:0.36, C:0.34, G:0.16, T:0.14
Consensus pattern (40 bp):
TGGGGATAGAATCGACCCATCCAACCCTACACACCAAGCA
Found at i:90846627 original size:5 final size:6
Alignment explanation
Indices: 90846611--90846649 Score: 51
Period size: 6 Copynumber: 6.0 Consensus size: 6
90846601 TTTTTCGGTG
90846611 GAAAAA GAAAAA GAAAAA GAAAAA GCAAGAAA GGAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA G-AA-AAA -GAAAAA
90846650 TCCTTCTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 19 0.63
7 5 0.17
8 5 0.17
9 1 0.03
ACGTcount: A:0.77, C:0.03, G:0.21, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:90848990 original size:21 final size:21
Alignment explanation
Indices: 90848964--90849004 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
90848954 GCATGATGAA
*
90848964 CTCAGGTGAGTTTTAATCTGG
1 CTCAGGTGAGTTCTAATCTGG
90848985 CTCAGGTGAGTTCTAATCTG
1 CTCAGGTGAGTTCTAATCTG
90849005 CTTGGCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.37
Consensus pattern (21 bp):
CTCAGGTGAGTTCTAATCTGG
Found at i:90853520 original size:32 final size:32
Alignment explanation
Indices: 90853484--90853555 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
90853474 ATTGCTATGT
** *
90853484 TTAAAAATTTAACATTTTAGTTGGTATTTTCA
1 TTAAAAATTTAACATTTTAGTCAGAATTTTCA
* *
90853516 TTAAAAATTTAACTTTTTAGTCAGAATTTTTA
1 TTAAAAATTTAACATTTTAGTCAGAATTTTCA
90853548 TTAAAAAT
1 TTAAAAAT
90853556 GATAGTCAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.49
Consensus pattern (32 bp):
TTAAAAATTTAACATTTTAGTCAGAATTTTCA
Found at i:90859333 original size:173 final size:171
Alignment explanation
Indices: 90858991--90859316 Score: 421
Period size: 171 Copynumber: 1.9 Consensus size: 171
90858981 CTTATAATTC
* * * * *
90858991 TTTTTATTCCAAATTTATGCATGGCTCATGTTGTTCTTGCATCATCCTTGCTTAATTTATGAATT
1 TTTTTATTCCAAATTTATGCATGGCGCATGTTGTTCCTACATCATCCATGCTTAATTTATGAAAT
* *
90859056 CTTTTCCTAATTAGAGAAAGAAAGAGAGAGATGAAATTAATATTTTATTTCTAGCTAAAAATTAA
66 ATTTTCCTAATTAGAGAAAGAAAGAGAGAGATGAAATTAATATTTTATTTCTAGCTAAAAATAAA
*
90859121 AAAAAAACTGAAATATATAAATTAAAGAAGTGTAATGTCTA
131 AAAAAAACTGAAATATACAAATTAAAGAAGTGTAATGTCTA
*
90859162 TTTTTATTCCAAATTTGTGCATGAG-GCATGTTGTTCCTACATCATATATCCATGCTTAATTTAT
1 TTTTTATTCCAAATTTATGCATG-GCGCATGTTGTTCCTACATC----ATCCATGCTTAATTTAT
* *
90859226 GAAATATTTTCTTAATTAGAGGGTAA-AAA-A-AGAGATG-AATTAATATTTTATTT-TAAGCTA
61 GAAATATTTTCCTAATTAGA--GAAAGAAAGAGAGAGATGAAATTAATATTTTATTTCT-AGCTA
*
90859286 AAAATAAAAAAAATAATTGAAATATACAAAT
123 AAAATAAAAAAAA-AACTGAAATATACAAAT
90859317 AAAAAGGTAC
Statistics
Matches: 134, Mismatches: 12, Indels: 15
0.83 0.07 0.09
Matches are distributed among these distances:
171 37 0.28
172 2 0.01
173 33 0.25
174 22 0.16
175 34 0.25
176 3 0.02
177 3 0.02
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (171 bp):
TTTTTATTCCAAATTTATGCATGGCGCATGTTGTTCCTACATCATCCATGCTTAATTTATGAAAT
ATTTTCCTAATTAGAGAAAGAAAGAGAGAGATGAAATTAATATTTTATTTCTAGCTAAAAATAAA
AAAAAAACTGAAATATACAAATTAAAGAAGTGTAATGTCTA
Found at i:90861811 original size:62 final size:61
Alignment explanation
Indices: 90861650--90861817 Score: 148
Period size: 62 Copynumber: 2.8 Consensus size: 61
90861640 TTAAATTAGT
* * ** *
90861650 TAATATTTAAATAATCTAATATAATTATACAT-AATA-TATATATTTTAAATACTTTTTAA
1 TAATATTTAAATAATTTAATATAATTATACATAAATATTATAAATTTTAAATACTAATAAA
* ** * * * *
90861709 TAATTAATTATTTATTTGTAAATTTAATTCTACATGAAATATTTTAAAATTTTAAATA-TAATAA
1 TAA-TATTTAAATAATT-T-AATATAATTATACAT-AAATATTAT-AAATTTTAAATACTAATAA
90861773 A
61 A
90861774 TAATATTTAAATAATTTAATATAATTATACATAAA-A-TATAAATT
1 TAATATTTAAATAATTTAATATAATTATACATAAATATTATAAATT
90861818 AATTCAAAAT
Statistics
Matches: 83, Mismatches: 19, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
58 5 0.06
59 5 0.06
60 9 0.11
61 4 0.05
62 26 0.31
63 1 0.01
64 13 0.16
65 9 0.11
66 11 0.13
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (61 bp):
TAATATTTAAATAATTTAATATAATTATACATAAATATTATAAATTTTAAATACTAATAAA
Found at i:90863714 original size:33 final size:33
Alignment explanation
Indices: 90863668--90863741 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
90863658 CCCTTGTGTT
*
90863668 CCACACGGTCAAGGCCAATTTGGGCCGTGTGGG
1 CCACACGGTCAAGGCCAATTTGGGCCATGTGGG
*
90863701 CCATACGGTCAAGGCCAATTTGGGCCATGTGGG
1 CCACACGGTCAAGGCCAATTTGGGCCATGTGGG
90863734 CCACACGG
1 CCACACGG
90863742 GTATGTGGGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18
Consensus pattern (33 bp):
CCACACGGTCAAGGCCAATTTGGGCCATGTGGG
Found at i:90863749 original size:17 final size:18
Alignment explanation
Indices: 90863727--90863760 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
90863717 AATTTGGGCC
90863727 ATGTGGG-CCACACGGGT
1 ATGTGGGCCCACACGGGT
90863744 ATGTGGGCCCACACGGG
1 ATGTGGGCCCACACGGG
90863761 CAAGCCACGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.18, C:0.26, G:0.41, T:0.15
Consensus pattern (18 bp):
ATGTGGGCCCACACGGGT
Found at i:90867173 original size:19 final size:18
Alignment explanation
Indices: 90867151--90867186 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
90867141 AATTTTTTTT
90867151 AAATATGTTAATTGAATTA
1 AAATATGTTAATT-AATTA
*
90867170 AAATATTTTAATTAATT
1 AAATATGTTAATTAATT
90867187 CAGTCGATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
AAATATGTTAATTAATTA
Found at i:90867178 original size:29 final size:27
Alignment explanation
Indices: 90867108--90867178 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 27
90867098 GAATTATTTA
90867108 AAATATAAAA-ATTTTTAATCGTTAATT
1 AAAT-TAAAATATTTTTAATCGTTAATT
* * *
90867135 AAATTAAATTTTTTTTAAATATGTTAATT
1 AAATTAAAATATTTTT-AAT-CGTTAATT
*
90867164 GAATTAAAATATTTT
1 AAATTAAAATATTTT
90867179 AATTAATTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 4 0.11
27 9 0.26
28 3 0.09
29 19 0.54
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.49
Consensus pattern (27 bp):
AAATTAAAATATTTTTAATCGTTAATT
Found at i:90867660 original size:25 final size:25
Alignment explanation
Indices: 90867632--90867685 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
90867622 TTATATATAT
*
90867632 TCAAATAATTATAATTAGAATTAAA
1 TCAAATAATTAGAATTAGAATTAAA
90867657 TCAAATAATTAGAATTAGAATTAAA
1 TCAAATAATTAGAATTAGAATTAAA
90867682 TCAA
1 TCAA
90867686 TAAATGTATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (25 bp):
TCAAATAATTAGAATTAGAATTAAA
Found at i:90867827 original size:12 final size:11
Alignment explanation
Indices: 90867809--90867838 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
90867799 AACCCAACCC
90867809 CAAAAAAAAAT
1 CAAAAAAAAAT
90867820 CAAAAAAAAAT
1 CAAAAAAAAAT
90867831 CAAAAAAA
1 CAAAAAAA
90867839 GAAAAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.83, C:0.10, G:0.00, T:0.07
Consensus pattern (11 bp):
CAAAAAAAAAT
Found at i:90868067 original size:27 final size:27
Alignment explanation
Indices: 90868036--90868094 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
90868026 TGTATTTTGG
90868036 AGAGAAGAAATTTTTTGAGATTCAAGA
1 AGAGAAGAAATTTTTTGAGATTCAAGA
*****
90868063 AGAGATTTTTTTTTTTGAGATTCAAGA
1 AGAGAAGAAATTTTTTGAGATTCAAGA
*
90868090 GGAGA
1 AGAGA
90868095 TTTTTCTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.36
Consensus pattern (27 bp):
AGAGAAGAAATTTTTTGAGATTCAAGA
Found at i:90868095 original size:27 final size:29
Alignment explanation
Indices: 90868046--90868120 Score: 118
Period size: 27 Copynumber: 2.6 Consensus size: 29
90868036 AGAGAAGAAA
90868046 TTTTTTGAGATTCAAGAAGAGA-TTT-TT
1 TTTTTTGAGATTCAAGAAGAGATTTTCTT
*
90868073 TTTTTTGAGATTCAAGAGGAGATTTTTCTT
1 TTTTTTGAGATTCAAGAAGAGA-TTTTCTT
90868103 TTTTTTGAGATTCAAGAA
1 TTTTTTGAGATTCAAGAA
90868121 CAAAAAATCA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 21 0.49
29 3 0.07
30 19 0.44
ACGTcount: A:0.28, C:0.05, G:0.19, T:0.48
Consensus pattern (29 bp):
TTTTTTGAGATTCAAGAAGAGATTTTCTT
Found at i:90868511 original size:3 final size:3
Alignment explanation
Indices: 90868503--90868538 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
90868493 TGCATTTTAA
90868503 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
90868539 GTGTATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:90868641 original size:3 final size:3
Alignment explanation
Indices: 90868633--90868671 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
90868623 TGTATTTCTA
90868633 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
90868672 AATATGGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:90868800 original size:16 final size:15
Alignment explanation
Indices: 90868769--90868811 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
90868759 CCTTCATTCC
*
90868769 ATTATTATTATTACT
1 ATTATTATTTTTACT
90868784 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
90868800 ATCATTATTTTT
1 ATTATTATTTTT
90868812 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:90868936 original size:16 final size:16
Alignment explanation
Indices: 90868915--90868946 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
90868905 CTATTATTAC
90868915 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
90868931 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
90868947 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:90868954 original size:3 final size:3
Alignment explanation
Indices: 90868946--90869081 Score: 100
Period size: 3 Copynumber: 44.7 Consensus size: 3
90868936 TTCTCATCAC
* * *
90868946 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT T-AT TAT TAT TAT
* * * * * * *
90868993 CTAA TA- TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
90869038 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
90869082 GCACTACTTT
Statistics
Matches: 107, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
2 7 0.07
3 88 0.82
4 12 0.11
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:90869125 original size:12 final size:12
Alignment explanation
Indices: 90868875--90869127 Score: 79
Period size: 12 Copynumber: 19.6 Consensus size: 12
90868865 TTTACTACCT
90868875 CTATTATGTATTA
1 CTATTAT-TATTA
90868888 CTAATATATTATTA
1 CT-AT-TATTATTA
*
90868902 CTACTATTATTA
1 CTATTATTATTA
*
90868914 CTGTTATTATCATCA
1 CTATTATTAT--T-A
* *
90868929 CTTGTTATTCTCATCA
1 C-TATTA-T-T-ATTA
*
90868945 CTATTATTATAA
1 CTATTATTATTA
* *
90868957 TTTATTATTGTTA
1 -CTATTATTATTA
90868970 CTTATTATT-TTAA
1 C-TATTATTATT-A
90868983 CTATTATTATCTA
1 CTATTATTAT-TA
* *
90868996 ATATATCATCATTA
1 CTAT-T-ATTATTA
90869010 -TCATTATT-TT-
1 CT-ATTATTATTA
*
90869020 C-ATTATAACTTA
1 CTATTATTA-TTA
*
90869032 ATAGATTATTATTA
1 CT--ATTATTATTA
*
90869046 TTATTATTATTA
1 CTATTATTATTA
*
90869058 TTATTATTATTA
1 CTATTATTATTA
*
90869070 TTATTATTATTAGCA
1 CTATTATTATT---A
*
90869085 CTACTT-TTACTA
1 CTA-TTATTATTA
*
90869097 CTATTATTTAATA
1 CTATTA-TTATTA
*
90869110 -TATTATTTTTA
1 CTATTATTATTA
90869121 CTATTAT
1 CTATTAT
90869128 CGTCATATTG
Statistics
Matches: 187, Mismatches: 22, Indels: 63
0.69 0.08 0.23
Matches are distributed among these distances:
9 5 0.03
11 10 0.05
12 78 0.42
13 34 0.18
14 21 0.11
15 26 0.14
16 9 0.05
17 1 0.01
18 1 0.01
19 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.55
Consensus pattern (12 bp):
CTATTATTATTA
Found at i:90869218 original size:22 final size:22
Alignment explanation
Indices: 90869156--90869228 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
90869146 ACTATTATAT
90869156 TATTA-TGTTATTATATCTTTTAC
1 TATTATTGTTATTATAT-TTTT-C
* *
90869179 TATTATT-ATAGTTGTATTTTTC
1 TATTATTGTTA-TTATATTTTTC
*
90869201 TATTATTGTTATTATATTTTCC
1 TATTATTGTTATTATATTTTTC
90869223 T-TTATT
1 TATTATT
90869229 TTTGTATTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
21 5 0.12
22 18 0.43
23 13 0.31
24 6 0.14
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.64
Consensus pattern (22 bp):
TATTATTGTTATTATATTTTTC
Found at i:90882283 original size:9 final size:10
Alignment explanation
Indices: 90882262--90882300 Score: 50
Period size: 9 Copynumber: 4.3 Consensus size: 10
90882252 AAGATGTTAC
90882262 TATTATTCA-
1 TATTATTCAT
90882271 TATT-TTCAT
1 TATTATTCAT
90882280 TATTATT-AT
1 TATTATTCAT
90882289 TATTATT-AT
1 TATTATTCAT
90882298 TAT
1 TAT
90882301 CATCATCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 4 0.14
9 22 0.79
10 2 0.07
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (10 bp):
TATTATTCAT
Found at i:90882284 original size:3 final size:3
Alignment explanation
Indices: 90882278--90882591 Score: 53
Period size: 3 Copynumber: 101.7 Consensus size: 3
90882268 TCATATTTTC
* * * * * **
90882278 ATT ATT ATT ATT ATT ATT ATT ATC ATC ATC ATC ATC ATT GCT ATT ATGT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T
* ** * * *
90882327 TTT AAC ATT ATT ATT TTCT ATT ATC ATCA ATGT -TT A-T ATT ATT ATT
1 ATT ATT ATT ATT ATT AT-T ATT ATT AT-T AT-T ATT ATT ATT ATT ATT
* * * * *** * * * *
90882373 ATTT ATT ATC AAT ATT AAT ATT ATC ATT GGC GTT TTT ATT ACT ATC
1 A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * ** *
90882419 ATT ATT ATT ATTT ACT ATT GTTT ATT ATC ATT ATT ATC ACC ATT CCTT
1 ATT ATT ATT A-TT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT -ATT
* * * * * *
90882467 AGT ATTT ACT ATT ATT ATT ATT ACT ATT -TT CATT ATT GTT ATC ACT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
* * * * * * *
90882513 ATT TTT ATTT ACT AGTG A-T ATT ATT ACTC CTT TTT ATT ATT AAT ATCT
1 ATT ATT A-TT ATT A-TT ATT ATT ATT A-TT ATT ATT ATT ATT ATT AT-T
* *
90882561 ATT ATC ATT A-T ATT ATT ACT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
90882592 CTTAGTATTA
Statistics
Matches: 215, Mismatches: 78, Indels: 36
0.65 0.24 0.11
Matches are distributed among these distances:
2 8 0.04
3 179 0.83
4 28 0.13
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:90882502 original size:21 final size:21
Alignment explanation
Indices: 90882477--90882517 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
90882467 AGTATTTACT
*
90882477 ATTATTATTATTACTATTTTC
1 ATTATTATTATCACTATTTTC
*
90882498 ATTATTGTTATCACTATTTT
1 ATTATTATTATCACTATTTT
90882518 TATTTACTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.10, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTATTATTATCACTATTTTC
Found at i:90882702 original size:3 final size:3
Alignment explanation
Indices: 90882688--90882906 Score: 58
Period size: 3 Copynumber: 73.3 Consensus size: 3
90882678 TTAACTTAAC
* * * * * *
90882688 TTA TTAA TTA TTA TTA TCA TTA TTG TTA TTA CT- TTA CTA TTG TAA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
90882733 TT- TAA TGTA TTA TTA ATA TTA CTC TTA TT- TTCA TTA TTA TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA
* * * * ** * *
90882778 TTA CTA TTA TTCT TTA TTG TCA TGG TTA TTA TTT TTA TTT TTA -TA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
90882823 GCTA TTA TT- TT- TTA TTA CTA ATA TCA TTA TTG TTA -TA TTTA GTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* * * * *
90882867 TTA TTT TTA CTT- TTA TTA TAA CTA CTA CTA TTA TTA TTA T
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
90882907 GATTTTTCTT
Statistics
Matches: 151, Mismatches: 51, Indels: 28
0.66 0.22 0.12
Matches are distributed among these distances:
2 14 0.09
3 122 0.81
4 15 0.10
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:90882837 original size:22 final size:22
Alignment explanation
Indices: 90882781--90882838 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
90882771 ATTATTATTA
* *
90882781 CTATTATTCTTTATTGTCATGG
1 CTATTATTTTTTATTGTCATAG
* * *
90882803 TTATTA-TTTTTATTTTTATAG
1 CTATTATTTTTTATTGTCATAG
90882824 CTATTATTTTTTATT
1 CTATTATTTTTTATT
90882839 ACTAATATCA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 16 0.55
22 13 0.45
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (22 bp):
CTATTATTTTTTATTGTCATAG
Found at i:90887171 original size:49 final size:49
Alignment explanation
Indices: 90887118--90887217 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
90887108 GGACCGAGGG
90887118 CCTTTTATATAGTAAATCCATAAGACATAACCCATCATAGTGTCAATGT
1 CCTTTTATATAGTAAATCCATAAGACATAACCCATCATAGTGTCAATGT
*
90887167 CCTTTTATATAGTAATTCCATAAGACATAACCCATCATAGTGTCAATGT
1 CCTTTTATATAGTAAATCCATAAGACATAACCCATCATAGTGTCAATGT
90887216 CC
1 CC
90887218 ATGCCCTATT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (49 bp):
CCTTTTATATAGTAAATCCATAAGACATAACCCATCATAGTGTCAATGT
Found at i:90888347 original size:12 final size:12
Alignment explanation
Indices: 90888330--90888354 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
90888320 GTTAACGTAC
90888330 TTAATAAATAAA
1 TTAATAAATAAA
90888342 TTAATAAATAAA
1 TTAATAAATAAA
90888354 T
1 T
90888355 CTTTTATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TTAATAAATAAA
Found at i:90889667 original size:18 final size:18
Alignment explanation
Indices: 90889605--90889667 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
90889595 TAACTAAATC
*
90889605 GAGTTATTCGGATTATTT
1 GAGTTAATCGGATTATTT
* * *
90889623 GAGTCAACTCGAATTTCATTC
1 GAGTTAA-TCGGA-TT-ATTT
90889644 GAGTTAATCGGATTATTT
1 GAGTTAATCGGATTATTT
90889662 GAGTTA
1 GAGTTA
90889668 TTCGAAATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 14 0.40
19 6 0.17
20 6 0.17
21 9 0.26
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (18 bp):
GAGTTAATCGGATTATTT
Found at i:90893693 original size:31 final size:30
Alignment explanation
Indices: 90893657--90893730 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 30
90893647 AATTCAATTA
*
90893657 TTAGTCATTTATTAT-ACATACAATTGTAGAT
1 TTAGTC-TATATTATCA-ATACAATTGTAGAT
*
90893688 TTAGTCTATATTCTCTAATACAATTGTAGAT
1 TTAGTCTATATTATC-AATACAATTGTAGAT
90893719 TTAGTCTATATT
1 TTAGTCTATATT
90893731 CTCTAAATAG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 6 0.15
31 32 0.82
32 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.47
Consensus pattern (30 bp):
TTAGTCTATATTATCAATACAATTGTAGAT
Found at i:90893731 original size:31 final size:31
Alignment explanation
Indices: 90893674--90893736 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
90893664 TTTATTATAC
90893674 ATACAATTGTAGATTTAGTCTATATTCTCTA
1 ATACAATTGTAGATTTAGTCTATATTCTCTA
90893705 ATACAATTGTAGATTTAGTCTATATTCTCTA
1 ATACAATTGTAGATTTAGTCTATATTCTCTA
90893736 A
1 A
90893737 ATAGACTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (31 bp):
ATACAATTGTAGATTTAGTCTATATTCTCTA
Found at i:90895830 original size:11 final size:11
Alignment explanation
Indices: 90895816--90895855 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
90895806 TATTTTTCCT
90895816 TATTTTGCTAC
1 TATTTTGCTAC
* *
90895827 TATTTTACTAT
1 TATTTTGCTAC
*
90895838 TATGTTGCTAC
1 TATTTTGCTAC
90895849 TATTTTG
1 TATTTTG
90895856 TTGTTATTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.12, G:0.10, T:0.57
Consensus pattern (11 bp):
TATTTTGCTAC
Found at i:90895903 original size:12 final size:11
Alignment explanation
Indices: 90895884--90895914 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
90895874 TATATAAAAC
90895884 TTATTTTATTA
1 TTATTTTATTA
90895895 TTAATTTTATTA
1 TT-ATTTTATTA
90895907 TTATTTTA
1 TTATTTTA
90895915 AAGACATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:90895931 original size:30 final size:30
Alignment explanation
Indices: 90895896--90895953 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
90895886 ATTTTATTAT
90895896 TAATTTTATTATTATTTTAAAGACATTTCC
1 TAATTTTATTATTATTTTAAAGACATTTCC
* *
90895926 TAATTTTGTTATTATTTTAGAGACATTT
1 TAATTTTATTATTATTTTAAAGACATTT
90895954 GCTTGTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (30 bp):
TAATTTTATTATTATTTTAAAGACATTTCC
Found at i:90902279 original size:20 final size:20
Alignment explanation
Indices: 90902256--90902293 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
90902246 AATAACCATG
90902256 ATTA-AAGGAAAACAAAAACT
1 ATTATAAGG-AAACAAAAACT
*
90902276 ATTATTAGGAAACAAAAA
1 ATTATAAGGAAACAAAAA
90902294 AGAATTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.63, C:0.08, G:0.11, T:0.18
Consensus pattern (20 bp):
ATTATAAGGAAACAAAAACT
Found at i:90905189 original size:20 final size:20
Alignment explanation
Indices: 90905164--90905201 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
90905154 AATTTCGCAT
90905164 CAGACACGAAATGCTTTTTC
1 CAGACACGAAATGCTTTTTC
*
90905184 CAGACATGAAATGCTTTT
1 CAGACACGAAATGCTTTT
90905202 GCCGAACACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (20 bp):
CAGACACGAAATGCTTTTTC
Found at i:90906402 original size:28 final size:28
Alignment explanation
Indices: 90906370--90906424 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
90906360 CAAGGCTGAC
90906370 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
90906398 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
90906425 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:90907221 original size:49 final size:53
Alignment explanation
Indices: 90907141--90907249 Score: 118
Period size: 51 Copynumber: 2.1 Consensus size: 53
90907131 AATATTATAT
* * *
90907141 TATATATATATTCTTTTAATATATTAGGTATAT-TC-TAAATTCTATATTACG
1 TATATATATATTATTATAATATATTAGGTATATATCTTAAATACTATATTACG
* * * **
90907192 TATATATATA-TATTATACTAT-TTATGTATATATCTTTAATACTATATTATT
1 TATATATATATTATTATAATATATTAGGTATATATCTTAAATACTATATTACG
90907243 TATATAT
1 TATATAT
90907250 TTTTTTTCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
49 9 0.19
50 10 0.21
51 29 0.60
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (53 bp):
TATATATATATTATTATAATATATTAGGTATATATCTTAAATACTATATTACG
Found at i:90907237 original size:51 final size:49
Alignment explanation
Indices: 90907121--90907250 Score: 131
Period size: 49 Copynumber: 2.6 Consensus size: 49
90907111 TTGTTATTAT
* * *
90907121 TATATCTTTTAATATTATATTATATATATATTCTTTTAATATATTAGGTA
1 TATATC-TTTAATACTATATTATATATATATTATTATAATATATTAGGTA
* * * *
90907171 TAT-TC-TAAATTCTATATTACGTATATATATATATTATACTAT-TTATGTA
1 TATATCTTTAATACTATATTA--TATATATAT-TATTATAATATATTAGGTA
*
90907220 TATATCTTTAATACTATATTATTTATATATT
1 TATATCTTTAATACTATATTATATATATATT
90907251 TTTTTTCTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
47 11 0.17
48 1 0.02
49 28 0.43
50 13 0.20
51 12 0.18
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (49 bp):
TATATCTTTAATACTATATTATATATATATTATTATAATATATTAGGTA
Found at i:90907283 original size:27 final size:28
Alignment explanation
Indices: 90907205--90907319 Score: 91
Period size: 27 Copynumber: 4.3 Consensus size: 28
90907195 ATATATATAT
*
90907205 TATACTATTTATGTATATATCTTTAATAC
1 TATATTATTTATGTATATAT-TTTAATAC
* * **
90907234 TATATTATTTATATAT-TTTTTTTCTAC
1 TATATTATTTATGTATATATTTTAATAC
*
90907261 -ATGTTATCTTATGTATATATTTTAAT--
1 TATATTAT-TTATGTATATATTTTAATAC
* *
90907287 TATATTATGTATGTAT-T-TTTT-ACAC
1 TATATTATTTATGTATATATTTTAATAC
90907312 TATATTAT
1 TATATTAT
90907320 GTACATTTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
23 1 0.01
24 4 0.06
25 9 0.13
26 13 0.19
27 19 0.28
28 8 0.12
29 14 0.21
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.58
Consensus pattern (28 bp):
TATATTATTTATGTATATATTTTAATAC
Found at i:90907294 original size:22 final size:22
Alignment explanation
Indices: 90907264--90907305 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
90907254 TTTCTACATG
*
90907264 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
90907286 TTATATTATGTATGTATTTT
1 TTATATTATGTATATATTTT
90907306 TTACACTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:90907320 original size:25 final size:25
Alignment explanation
Indices: 90907182--90907333 Score: 87
Period size: 25 Copynumber: 5.9 Consensus size: 25
90907172 ATTCTAAATT
* * *
90907182 CTATATTACGTATATATATATATTATA
1 CTATATTATGTATATAT-T-TTTTACA
* * *
90907209 CTAT-TTATGTATATATCTTTAATA
1 CTATATTATGTATATATTTTTTACA
*
90907233 CTATATTATTTATATATTTTTTTTCTACA
1 CTATATTATGTATATA---TTTTT-TACA
* *
90907262 TGTTATCTTATGTATATA--TTTTA-A
1 --CTATATTATGTATATATTTTTTACA
* *
90907286 TTATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATTTTTTACA
* *
90907311 CTATATTATGTACATTTTTTTTA
1 CTATATTATGTATATATTTTTTA
90907334 TATCTATTTC
Statistics
Matches: 98, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
22 14 0.14
24 15 0.15
25 32 0.33
26 14 0.14
27 4 0.04
28 4 0.04
29 2 0.02
31 13 0.13
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTTACA
Found at i:90907419 original size:25 final size:24
Alignment explanation
Indices: 90907391--90907446 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
90907381 GTTATATTTT
*
90907391 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
90907416 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
90907439 CACTATTA
1 CACTATTA
90907447 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:90918906 original size:27 final size:25
Alignment explanation
Indices: 90918801--90918932 Score: 82
Period size: 25 Copynumber: 5.6 Consensus size: 25
90918791 TTTTTTTTGT
* *
90918801 TATTAT-TATATCT-TTTAATATTA
1 TATTATGTATATATATTTAATACTA
* * *
90918824 TATTATATATAT-TCTTT--TAATA
1 TATTATGTATATATATTTAATACTA
* * * *
90918846 TATTAGGTATAT-T-CTAAATTCTA
1 TATTATGTATATATATTTAATACTA
*
90918869 TATTACGTATATATATATT-ATACTA
1 TATTATGTATATATAT-TTAATACTA
* *
90918894 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATATTTAATACTA
*
90918919 TATTATTTATATAT
1 TATTATGTATATAT
90918933 TTTTTTTCTA
Statistics
Matches: 85, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
21 1 0.01
22 15 0.18
23 21 0.25
24 11 0.13
25 36 0.42
26 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (25 bp):
TATTATGTATATATATTTAATACTA
Found at i:90918966 original size:27 final size:28
Alignment explanation
Indices: 90918895--90919002 Score: 77
Period size: 27 Copynumber: 4.0 Consensus size: 28
90918885 ATTATACTAT
90918895 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* * ** *
90918924 TTTATATAT-TTTTTTTCTAC-ATGTTA
1 TTTATGTATATATTTTAATACTATATTA
*
90918950 TCTTATGTATATATTTTAAT--TATATCA
1 T-TTATGTATATATTTTAATACTATATTA
* *
90918977 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
90919002 T
1 T
90919003 GTACATTTTT
Statistics
Matches: 60, Mismatches: 14, Indels: 14
0.68 0.16 0.16
Matches are distributed among these distances:
23 1 0.02
24 4 0.07
25 8 0.13
26 13 0.22
27 18 0.30
28 8 0.13
29 8 0.13
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:90919004 original size:25 final size:25
Alignment explanation
Indices: 90918866--90919015 Score: 81
Period size: 25 Copynumber: 5.9 Consensus size: 25
90918856 ATTCTAAATT
* * * *
90918866 CTATATTACGTATATATATATTATA
1 CTATATTATGTATATATTTTTTACA
* * * *
90918891 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATTTTTTACA
*
90918916 CTATATTATTTATATATTTTTTTTCTACA
1 CTATATTATGTATATA---TTTTT-TACA
* *
90918945 TGTTATCTTATGTATATA--TTTTA-A
1 --CTATATTATGTATATATTTTTTACA
* * *
90918969 TTATATCATGTATGTATTTTTTACA
1 CTATATTATGTATATATTTTTTACA
* *
90918994 CTATATTATGTACATTTTTTTT
1 CTATATTATGTATATATTTTTT
90919016 TATATCTATT
Statistics
Matches: 95, Mismatches: 21, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
22 13 0.14
24 6 0.06
25 54 0.57
26 3 0.03
28 4 0.04
29 2 0.02
31 13 0.14
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.57
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTTACA
Found at i:90919104 original size:25 final size:24
Alignment explanation
Indices: 90919076--90919131 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
90919066 GTTATATTTT
*
90919076 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
90919101 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
90919124 CACTATTA
1 CACTATTA
90919132 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:90923215 original size:17 final size:18
Alignment explanation
Indices: 90923188--90923223 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
90923178 TATATTTTTA
90923188 AAAAAATTAAATTAAATT
1 AAAAAATTAAATTAAATT
*
90923206 AAAAAA-TAAATTATATT
1 AAAAAATTAAATTAAATT
90923223 A
1 A
90923224 GGGTGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAAATTAAATTAAATT
Found at i:90923487 original size:14 final size:14
Alignment explanation
Indices: 90923468--90923504 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
90923458 TTTTTCCTCC
90923468 ATTTTTAATT-TTA
1 ATTTTTAATTCTTA
90923481 TATTTTTAATTCTTA
1 -ATTTTTAATTCTTA
90923496 ATTTTTAAT
1 ATTTTTAAT
90923505 AAAATTCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 19 0.86
15 3 0.14
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (14 bp):
ATTTTTAATTCTTA
Found at i:90925822 original size:33 final size:33
Alignment explanation
Indices: 90925785--90925866 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
90925775 GGACCTTTCT
* ** * **
90925785 TTTTCTAGTTGTACACTTGAGGTGCACATTCCC
1 TTTTCAAGTTGTACACACGAAGTGCACATAACC
*
90925818 TTTTCAAGTGGTACACACGAAGTGCACATAACC
1 TTTTCAAGTTGTACACACGAAGTGCACATAACC
90925851 TTTTCAAG-TGTACACA
1 TTTTCAAGTTGTACACA
90925867 TATAGTGTAC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 7 0.17
33 34 0.83
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (33 bp):
TTTTCAAGTTGTACACACGAAGTGCACATAACC
Found at i:90925885 original size:32 final size:33
Alignment explanation
Indices: 90925816--90925922 Score: 99
Period size: 33 Copynumber: 3.3 Consensus size: 33
90925806 GTGCACATTC
* ** * **
90925816 CCTTTTCAAGTGGTACACACGAAGTGCACATAA
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* * * *
90925849 CCTTTTCAAGT-GTACACATATAGTGTACTTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* *
90925881 CCTTTTTAAGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
90925914 CCTTTTCAA
1 CCTTTTCAA
90925923 TACCACCCTT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
32 24 0.41
33 35 0.59
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTATACCTTT
Found at i:90932410 original size:31 final size:31
Alignment explanation
Indices: 90932335--90932411 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
90932325 GCGTGTGTGC
* *
90932335 CACACGAGCGTATGGGCCCACACAGGCATGT
1 CACACGGGCGTGTGGGCCCACACAGGCATGT
* *
90932366 CACACGGGTGTGTGGGCCCACACGGGCATGT
1 CACACGGGCGTGTGGGCCCACACAGGCATGT
*
90932397 CACATGGGCGTGTGG
1 CACACGGGCGTGTGG
90932412 ATTTTGGGGC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.19, C:0.29, G:0.36, T:0.16
Consensus pattern (31 bp):
CACACGGGCGTGTGGGCCCACACAGGCATGT
Found at i:90934117 original size:18 final size:18
Alignment explanation
Indices: 90934094--90934131 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
90934084 ACATCCAAAG
*
90934094 TAATAATTTACATTTTCT
1 TAATAATATACATTTTCT
90934112 TAATAATATACATTTTCT
1 TAATAATATACATTTTCT
90934130 TA
1 TA
90934132 TAGTTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATAATATACATTTTCT
Found at i:90934557 original size:17 final size:19
Alignment explanation
Indices: 90934521--90934561 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
90934511 GATTTCCTAG
90934521 AGTTTACAGATTTTATTTT
1 AGTTTACAGATTTTATTTT
*
90934540 AGTTT-CAGTTTTTA-TTT
1 AGTTTACAGATTTTATTTT
90934557 AGTTT
1 AGTTT
90934562 TATCTTTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 8 0.38
19 5 0.24
ACGTcount: A:0.22, C:0.05, G:0.12, T:0.61
Consensus pattern (19 bp):
AGTTTACAGATTTTATTTT
Found at i:90936288 original size:16 final size:16
Alignment explanation
Indices: 90936267--90936298 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
90936257 TGTGTAACGC
90936267 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
90936283 CCCAAAAATCCTGAAA
1 CCCAAAAATCCCGAAA
90936299 TCCCGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:90937557 original size:16 final size:16
Alignment explanation
Indices: 90937531--90937573 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
90937521 ATGGAACGGC
*
90937531 AAAAGCTGAAATACCG
1 AAAAGCCGAAATACCG
* **
90937547 AAAAGTCGAAATGTCG
1 AAAAGCCGAAATACCG
90937563 AAAAGCCGAAA
1 AAAAGCCGAAA
90937574 GTTGGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.51, C:0.16, G:0.21, T:0.12
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:90937715 original size:18 final size:19
Alignment explanation
Indices: 90937680--90937717 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
90937670 AGAATTGGCC
90937680 AAATGGGCCGGAATGGGCT
1 AAATGGGCCGGAATGGGCT
*
90937699 AAATGGGCCTG-ATGGGCT
1 AAATGGGCCGGAATGGGCT
90937717 A
1 A
90937718 TCGGGCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.26, C:0.16, G:0.39, T:0.18
Consensus pattern (19 bp):
AAATGGGCCGGAATGGGCT
Found at i:90937839 original size:29 final size:29
Alignment explanation
Indices: 90937797--90937908 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
90937787 ATACTATGAT
*
90937797 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAGTGGGCCATATGAATGTGAA
* * *
90937826 TTGGGCCTAGTGGGCCATAAGAGTATGAA
1 TTGGGCCTAGTGGGCCATATGAATGTGAA
* *
90937855 TTGGGCC-AGATAGGCCATATGAATGAG-A
1 TTGGGCCTAG-TGGGCCATATGAATGTGAA
* * *
90937883 TTGAGCCTAGTGGGCTATATGCATGT
1 TTGGGCCTAGTGGGCCATATGAATGT
90937909 ATGTAGAGGT
Statistics
Matches: 67, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
28 21 0.31
29 46 0.69
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAGTGGGCCATATGAATGTGAA
Found at i:90941320 original size:7 final size:7
Alignment explanation
Indices: 90941304--90941354 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
90941294 CCTTCCTCAA
90941304 TTTC-TT
1 TTTCTTT
90941310 TTTCTTT
1 TTTCTTT
90941317 TTTCTTT
1 TTTCTTT
90941324 TTT-TATT
1 TTTCT-TT
*
90941331 TTTCTTG
1 TTTCTTT
*
90941338 TTTCTCT
1 TTTCTTT
*
90941345 TTTATTT
1 TTTCTTT
90941352 TTT
1 TTT
90941355 TATCGGTCGT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
6 5 0.14
7 31 0.84
8 1 0.03
ACGTcount: A:0.04, C:0.12, G:0.02, T:0.82
Consensus pattern (7 bp):
TTTCTTT
Found at i:90941333 original size:21 final size:20
Alignment explanation
Indices: 90941308--90941353 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
90941298 CCTCAATTTC
* *
90941308 TTTTTCTTTTTTCTTTTTTTA
1 TTTTTCTTGTTTC-TCTTTTA
90941329 TTTTTCTTGTTTCTCTTTTA
1 TTTTTCTTGTTTCTCTTTTA
90941349 TTTTT
1 TTTTT
90941354 TTATCGGTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.04, C:0.11, G:0.02, T:0.83
Consensus pattern (20 bp):
TTTTTCTTGTTTCTCTTTTA
Found at i:90941347 original size:28 final size:27
Alignment explanation
Indices: 90941304--90941357 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
90941294 CCTTCCTCAA
* *
90941304 TTTCTTTTTCTTTTTTCTTTTTTTATT
1 TTTCTTTTTCTCTTTTATTTTTTTATT
90941331 TTTCTTGTTTCTCTTTTATTTTTTTAT
1 TTTCTT-TTTCTCTTTTATTTTTTTAT
90941358 CGGTCGTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.06, C:0.11, G:0.02, T:0.81
Consensus pattern (27 bp):
TTTCTTTTTCTCTTTTATTTTTTTATT
Found at i:90945147 original size:17 final size:17
Alignment explanation
Indices: 90945125--90945159 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
90945115 CAAGTTAAAG
90945125 ATTAGTATCAATAGAAC
1 ATTAGTATCAATAGAAC
90945142 ATTAGTATCAATAGAAC
1 ATTAGTATCAATAGAAC
90945159 A
1 A
90945160 AGGTAAGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (17 bp):
ATTAGTATCAATAGAAC
Found at i:90947127 original size:46 final size:46
Alignment explanation
Indices: 90947060--90947276 Score: 301
Period size: 46 Copynumber: 4.7 Consensus size: 46
90947050 TGGCAACCTG
* *
90947060 TGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* *
90947106 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
90947152 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** *
90947198 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
* * * *
90947244 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
90947277 TCACGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 155 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:90947262 original size:138 final size:130
Alignment explanation
Indices: 90947011--90947276 Score: 354
Period size: 138 Copynumber: 2.0 Consensus size: 130
90947001 AGTGTGCTCT
*
90947011 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
* * * * *
90947076 TGAAAGATACCATGACAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGACAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
* *
90947141 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAG
*
90947206 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACAC
58 ACCATGGTTGAAAGATACCATGACAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACAC
*
90947270 TATGGCA
122 CATGGCA
90947277 TCACGTCAAA
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
130 47 0.40
133 2 0.02
136 1 0.01
137 1 0.01
138 66 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
TGAAAGATACCATGACAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:90955580 original size:47 final size:49
Alignment explanation
Indices: 90955458--90955637 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
90955448 TGTAACCCGC
* * * *
90955458 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
90955504 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
90955554 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
90955598 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
90955638 TCAACCATCC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:90955626 original size:94 final size:93
Alignment explanation
Indices: 90955466--90955637 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
90955456 GCCCATAAGT
* * *
90955466 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
90955531 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
90955559 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
90955624 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
90955638 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:90956089 original size:30 final size:30
Alignment explanation
Indices: 90956055--90956114 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
90956045 CCTTAATACG
90956055 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
90956085 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
90956115 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:90963134 original size:47 final size:49
Alignment explanation
Indices: 90963012--90963191 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
90963002 TGTAACCCGC
* * * *
90963012 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
90963058 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
90963108 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
90963152 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
90963192 TCAACCATCC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:90963180 original size:94 final size:93
Alignment explanation
Indices: 90963020--90963191 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
90963010 GCCCATAAGT
* * *
90963020 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
90963085 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
90963113 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
90963178 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
90963192 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:90963644 original size:30 final size:30
Alignment explanation
Indices: 90963610--90963669 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
90963600 CCTTAATACG
90963610 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
90963640 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
90963670 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:90964981 original size:21 final size:20
Alignment explanation
Indices: 90964969--90965012 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
90964959 ATGCCTGTGT
*
90964969 TGAAGAAGCACATGGTCGTG
1 TGAAGAAGCACATGCTCGTG
* * *
90964989 TGAAGAAGCATACGCCCGTG
1 TGAAGAAGCACATGCTCGTG
90965009 TGAA
1 TGAA
90965013 AAGAGGCACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.18, G:0.32, T:0.18
Consensus pattern (20 bp):
TGAAGAAGCACATGCTCGTG
Found at i:90965789 original size:24 final size:24
Alignment explanation
Indices: 90965754--90965800 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
90965744 CAAATTAAAA
* *
90965754 TAAAATTAAAAATAAATAAAAATT
1 TAAAATTAAAAAGAAACAAAAATT
90965778 TAAAACTT-AAAAGAAACAAAAAT
1 TAAAA-TTAAAAAGAAACAAAAAT
90965801 AAAACAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.23
Consensus pattern (24 bp):
TAAAATTAAAAAGAAACAAAAATT
Found at i:90966177 original size:18 final size:19
Alignment explanation
Indices: 90966154--90966202 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
90966144 AATTACATGG
*
90966154 ATATTCAGAAT-CATATAC
1 ATATTCAGAATGCAGATAC
*
90966172 ATATTCAG-ATGCAGATGC
1 ATATTCAGAATGCAGATAC
90966190 ATATTCAG-ATGCA
1 ATATTCAGAATGCA
90966203 TAATCAGATC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (19 bp):
ATATTCAGAATGCAGATAC
Found at i:90970044 original size:25 final size:25
Alignment explanation
Indices: 90970016--90970066 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
90970006 AGAGGGTAAG
90970016 ATAGAAATTGCATGTGTTTCATTAT
1 ATAGAAATTGCATGTGTTTCATTAT
90970041 ATAGAAATTGCATGTGTTTCATTAT
1 ATAGAAATTGCATGTGTTTCATTAT
90970066 A
1 A
90970067 CGAGCCTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (25 bp):
ATAGAAATTGCATGTGTTTCATTAT
Found at i:90978962 original size:51 final size:51
Alignment explanation
Indices: 90978891--90979051 Score: 286
Period size: 51 Copynumber: 3.2 Consensus size: 51
90978881 CTAATCACAT
*
90978891 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* *
90978942 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
90978993 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
90979044 TTGTCACT
1 TTATCACT
90979052 GATCAGAAGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 104 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:90984006 original size:6 final size:6
Alignment explanation
Indices: 90983995--90984041 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
90983985 TGATAAAAAA
*
90983995 TTTTGT TTTTGT TTTCG- TTTT-T TTTTGTT TTTTGT TTTT-T TTTTGT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTG-T TTTTGT TTTTGT TTTTGT
90984041 T
1 T
90984042 ATTGATTGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
5 12 0.34
6 17 0.49
7 6 0.17
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (6 bp):
TTTTGT
Found at i:90984021 original size:16 final size:17
Alignment explanation
Indices: 90983995--90984037 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
90983985 TGATAAAAAA
90983995 TTTTGTTTTTG-TTTTCG
1 TTTT-TTTTTGTTTTTCG
*
90984012 TTTTTTTTTGTTTTTTG
1 TTTTTTTTTGTTTTTCG
90984029 TTTTTTTTT
1 TTTTTTTTT
90984038 TGTTATTGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.86
Consensus pattern (17 bp):
TTTTTTTTTGTTTTTCG
Found at i:90984026 original size:11 final size:11
Alignment explanation
Indices: 90983995--90984041 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
90983985 TGATAAAAAA
*
90983995 TTTTGTTTTTG
1 TTTTTTTTTTG
90984006 TTTTCGTTTTTT-
1 TTTT--TTTTTTG
*
90984018 TTTGTTTTTTG
1 TTTTTTTTTTG
90984029 TTTTTTTTTTG
1 TTTTTTTTTTG
90984040 TT
1 TT
90984042 ATTGATTGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
10 6 0.20
11 16 0.53
12 3 0.10
13 5 0.17
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:90984038 original size:18 final size:18
Alignment explanation
Indices: 90983995--90984041 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
90983985 TGATAAAAAA
*
90983995 TTTTGTTTTTG-TTTTCG
1 TTTTTTTTTTGTTTTTCG
*
90984012 -TTTTTTTTTGTTTTTTG
1 TTTTTTTTTTGTTTTTCG
90984029 TTTTTTTTTTGTT
1 TTTTTTTTTTGTT
90984042 ATTGATTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 9 0.35
17 5 0.19
18 12 0.46
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (18 bp):
TTTTTTTTTTGTTTTTCG
Found at i:90989145 original size:17 final size:18
Alignment explanation
Indices: 90989112--90989150 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
90989102 CATGTGGTCT
90989112 GCCCGTGTAGACCCACAC
1 GCCCGTGTAGACCCACAC
* *
90989130 GCCCGTGT-GGCCCACAT
1 GCCCGTGTAGACCCACAC
90989147 GCCC
1 GCCC
90989151 AGATTGGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.15, C:0.46, G:0.26, T:0.13
Consensus pattern (18 bp):
GCCCGTGTAGACCCACAC
Found at i:90991399 original size:47 final size:47
Alignment explanation
Indices: 90991343--90991437 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
90991333 ATTCATATGC
90991343 TACTATTAGTCTATGCACTCATAGCATACTCATTCAACACTTTTCAT
1 TACTATTAGTCTATGCACTCATAGCATACTCATTCAACACTTTTCAT
*
90991390 TACTATTAGTTTATGCACTCATAGCATACTCATTCAACACTTTTCAT
1 TACTATTAGTCTATGCACTCATAGCATACTCATTCAACACTTTTCAT
90991437 T
1 T
90991438 CACAATCACA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.40
Consensus pattern (47 bp):
TACTATTAGTCTATGCACTCATAGCATACTCATTCAACACTTTTCAT
Found at i:90991922 original size:12 final size:12
Alignment explanation
Indices: 90991905--90991936 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
90991895 CAGCCCGCCC
90991905 ATATTAATTTTT
1 ATATTAATTTTT
90991917 ATATT-ATTTTT
1 ATATTAATTTTT
90991928 ATA-TAATTT
1 ATATTAATTT
90991937 AAAATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:90992096 original size:30 final size:30
Alignment explanation
Indices: 90992060--90992122 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
90992050 ACTTAACAAT
* *
90992060 CAAATGTGTCTAAAATAATAATAAAATTAA
1 CAAATGTCTCTAAAATAATAAAAAAATTAA
*
90992090 CAAATGTCTTTAAAATAATAAAAAAATTAA
1 CAAATGTCTCTAAAATAATAAAAAAATTAA
90992120 CAA
1 CAA
90992123 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.29
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAAAAAAATTAA
Found at i:90992636 original size:16 final size:17
Alignment explanation
Indices: 90992604--90992636 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
90992594 TTTCATCATC
90992604 TCTCAAACTTTTAAATT
1 TCTCAAACTTTTAAATT
*
90992621 TCTCAAA-TTTTCAATT
1 TCTCAAACTTTTAAATT
90992637 AAACAATCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
TCTCAAACTTTTAAATT
Found at i:90999639 original size:12 final size:12
Alignment explanation
Indices: 90999624--90999649 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
90999614 ACAAAATATA
90999624 TTTAATGGTGTT
1 TTTAATGGTGTT
90999636 TTTAATGGTGTT
1 TTTAATGGTGTT
90999648 TT
1 TT
90999650 GCAAATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (12 bp):
TTTAATGGTGTT
Found at i:91004099 original size:9 final size:9
Alignment explanation
Indices: 91004074--91004119 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
91004064 TCGAAAAAAA
91004074 AATTCGAGTT
1 AATTCGA-TT
*
91004084 GATTCGATT
1 AATTCGATT
91004093 AATTCGATT
1 AATTCGATT
*
91004102 AACTCGATT
1 AATTCGATT
*
91004111 AACTCGATT
1 AATTCGATT
91004120 CGAATAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 27 0.82
10 6 0.18
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (9 bp):
AATTCGATT
Found at i:91008838 original size:38 final size:38
Alignment explanation
Indices: 91008787--91008863 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
91008777 AAATATGTGT
*
91008787 ATTTACGAATACAAGTGTATTCATAGGGATCGATGAAA
1 ATTTACGAATACAAGTGTATTCATAGGGATAGATGAAA
91008825 ATTTACGAATACAAGTGTATTCATAGGGATAGATGAAA
1 ATTTACGAATACAAGTGTATTCATAGGGATAGATGAAA
91008863 A
1 A
91008864 AACTAATAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.29
Consensus pattern (38 bp):
ATTTACGAATACAAGTGTATTCATAGGGATAGATGAAA
Found at i:91010603 original size:12 final size:11
Alignment explanation
Indices: 91010586--91010668 Score: 64
Period size: 10 Copynumber: 7.5 Consensus size: 11
91010576 AAAAAAATTC
91010586 TTTTATTATATA
1 TTTTATT-TATA
91010598 TTTTA-TTATA
1 TTTTATTTATA
* *
91010608 TATATATTTATTC
1 T-TTTATTTA-TA
*
91010621 TTTTTTTTAT-
1 TTTTATTTATA
* *
91010631 TTTTATTTCTT
1 TTTTATTTATA
*
91010642 TTTTATTTTTA
1 TTTTATTTATA
91010653 TTTTA-TTATA
1 TTTTATTTATA
91010663 TTTTAT
1 TTTTAT
91010669 ATGTAAAATA
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
10 22 0.39
11 19 0.33
12 14 0.25
13 2 0.04
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTATTTATA
Found at i:91010633 original size:6 final size:6
Alignment explanation
Indices: 91010614--91010656 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
91010604 TATATATATA
*
91010614 TTTATT CTTT-TT TTTATT TTTATT TCT-TT TTTATT TTTATT TT
1 TTTATT -TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
91010657 ATTATATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 7 0.22
6 22 0.69
7 3 0.09
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:91010645 original size:17 final size:17
Alignment explanation
Indices: 91010623--91010655 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
91010613 ATTTATTCTT
91010623 TTTTTTATTTTTATTTC
1 TTTTTTATTTTTATTTC
91010640 TTTTTTATTTTTATTT
1 TTTTTTATTTTTATTT
91010656 TATTATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTATTTTTATTTC
Found at i:91010650 original size:22 final size:23
Alignment explanation
Indices: 91010598--91010664 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 23
91010588 TTATTATATA
* * *
91010598 TTTTATTATATATATATTTATTC
1 TTTTATTTTATTTTTATTTATTC
*
91010621 TTTT-TTTTATTTTTATTTCTT-
1 TTTTATTTTATTTTTATTTATTC
91010642 TTTTATTTT-TATTTTATTATATT
1 TTTTATTTTAT-TTTTATT-TATT
91010665 TTATATGTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
21 5 0.14
22 24 0.67
23 7 0.19
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTATTTTATTTTTATTTATTC
Found at i:91014641 original size:14 final size:16
Alignment explanation
Indices: 91014622--91014658 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
91014612 TCGATGTCCT
91014622 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
91014636 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
91014652 TTT-CATC
1 TTTGCATC
91014659 ACATCGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:91021320 original size:86 final size:84
Alignment explanation
Indices: 91021228--91021501 Score: 234
Period size: 86 Copynumber: 3.2 Consensus size: 84
91021218 TCTCACACCA
* * *
91021228 AAGCAGATCCAAGATAATAGATCTGGCATCTCCATTTCGACGGATAGCAGACATATAGCAAATCT
1 AAGCAGATCCAAGATAATAGATCTGGAATCTCCATTTCGACAGA-AGCAGACACATAGCAAATCT
91021293 AACCTTCAGATGTTTATACTG
65 AACCTTCAGATGTTT-TACTG
* *** * * *
91021314 AAGCAGATCCAAG---AT-GATTTGGAATTCTTGTGTTTACAAGAAACA-AATCAAAGACATAGC
1 AAGCAGATCCAAGATAATAGATCTGGAA-TC-TCCATTT-C--G--ACAGAAGCAGACACATAGC
* * * * **
91021374 AGATTTGACTTTCAGATGTTCTTACAA
59 AAATCTAACCTTCAGATGTT-TTACTG
* * *
91021401 AAGCAGATCCAAGATAACAGATCTGGAATCTCCATTTCGACTGAACGCAGATACATAGCAAATCT
1 AAGCAGATCCAAGATAATAGATCTGGAATCTCCATTTCGACAGAA-GCAGACACATAGCAAATCT
91021466 AACCTTCAGATGATTTTACTG
65 AACCTTCAGATG-TTTTACTG
91021487 AAGCAGATCCAAGAT
1 AAGCAGATCCAAGAT
91021502 GATTTGGTAT
Statistics
Matches: 142, Mismatches: 31, Indels: 30
0.70 0.15 0.15
Matches are distributed among these distances:
82 7 0.05
83 4 0.03
84 6 0.04
85 3 0.02
86 57 0.40
87 45 0.32
88 3 0.02
89 6 0.04
90 3 0.02
91 8 0.06
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (84 bp):
AAGCAGATCCAAGATAATAGATCTGGAATCTCCATTTCGACAGAAGCAGACACATAGCAAATCTA
ACCTTCAGATGTTTTACTG
Found at i:91021392 original size:87 final size:87
Alignment explanation
Indices: 91021297--91021590 Score: 242
Period size: 87 Copynumber: 3.4 Consensus size: 87
91021287 AAATCTAACC
*
91021297 TTCAGATGTT-TATACTGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGAAACAAA
1 TTCAGATGTTCT-TACTAAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGAAACAAA
91021361 TCAAAGACATAGCAGATTTGACT
65 TCAAAGACATAGCAGATTTGACT
* * *** ***
91021384 TTCAGATGTTCTTACAAAAGCAGATCCAAGATAACAGATCTGGAA-TC-TCCATTT-C--GACTG
1 TTCAGATGTTCTTACTAAAGCAGATCCAAGAT----GATTTGGAATTCTTGTGTTTACAAGAAAC
** * * * * * *
91021444 AACGCAGATACATAGCAAATCTAACC
62 AAATCAAAGACATAGCAGATTTGACT
* * * *
91021470 TTCAGATGATT-TTACTGAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAA
1 TTCAGATG-TTCTTACTAAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGAAACAAA
*
91021534 TCGAAGACATAGCAGATTTGACT
65 TCAAAGACATAGCAGATTTGACT
* * *
91021557 TTCGGATGTTCTCACACCAAAGCAGATCCAAGAT
1 TTCAGATGTTCT--TACTAAAGCAGATCCAAGAT
91021591 AACAGATTTG
Statistics
Matches: 151, Mismatches: 42, Indels: 26
0.69 0.19 0.12
Matches are distributed among these distances:
82 7 0.05
83 1 0.01
84 4 0.03
85 1 0.01
86 49 0.32
87 56 0.37
88 2 0.01
89 21 0.14
90 2 0.01
91 8 0.05
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (87 bp):
TTCAGATGTTCTTACTAAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGAAACAAAT
CAAAGACATAGCAGATTTGACT
Found at i:91021669 original size:175 final size:175
Alignment explanation
Indices: 91021183--91021717 Score: 853
Period size: 175 Copynumber: 3.1 Consensus size: 175
91021173 GACGAGGAGA
* * *
91021183 AAATTGAAGACATAGCAGATCTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAATAG
1 AAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAG
* * *
91021248 ATCTGGCATCTCCATTTCGACGGATAGCAGACATATAGCAAATCTAACCTTCAGATG-TTTATAC
66 ATCTGGAATCTCCATTTCGACGGATAGCAGATACATAGCAAATCTAACCTTCAGATGATTT-TAC
* * *
91021312 TGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGAAAC
130 TGAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAC
* * *
91021358 AAATCAAAGACATAGCAGATTTGACTTTCAGATGTTCTTACA--AAAGCAGATCCAAGATAACAG
1 AAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAG
*
91021421 ATCTGGAATCTCCATTTCGACTGA-ACGCAGATACATAGCAAATCTAACCTTCAGATGATTTTAC
66 ATCTGGAATCTCCATTTCGACGGATA-GCAGATACATAGCAAATCTAACCTTCAGATGATTTTAC
91021485 TGAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAC
130 TGAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAC
91021531 AAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAG
1 AAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAG
* * * *
91021596 ATTTGGTATCTCCATTTTGACGGATAGCAGATACATAGCAGATCTAACCTTCAGATGATTTTACT
66 ATCTGGAATCTCCATTTCGACGGATAGCAGATACATAGCAAATCTAACCTTCAGATGATTTTACT
* *
91021661 GAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTCACAAGGAGC
131 GAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAC
91021706 AAATCGAAGACA
1 AAATCGAAGACA
91021718 CCGCGGATTT
Statistics
Matches: 332, Mismatches: 23, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
172 1 0.00
173 156 0.47
174 3 0.01
175 171 0.52
176 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (175 bp):
AAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAG
ATCTGGAATCTCCATTTCGACGGATAGCAGATACATAGCAAATCTAACCTTCAGATGATTTTACT
GAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAC
Found at i:91023510 original size:12 final size:12
Alignment explanation
Indices: 91023495--91023555 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
91023485 AAAAGTTTTC
91023495 TTTTATTATATA
1 TTTTATTATATA
91023507 TTTTATTATATATA
1 TTTTA-T-TATATA
* * *
91023521 TATTTATTCTGTT
1 T-TTTATTATATA
*
91023534 TTTTATT-TTTA
1 TTTTATTATATA
91023545 TTTTATTATAT
1 TTTTATTATAT
91023556 TTTATATGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
11 9 0.23
12 13 0.33
13 5 0.13
14 8 0.21
15 4 0.10
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (12 bp):
TTTTATTATATA
Found at i:91027752 original size:10 final size:10
Alignment explanation
Indices: 91027733--91027781 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
91027723 TAATTTTAGC
*
91027733 TTTATTTTTA
1 TTTATCTTTA
91027743 TTTATCTTTA
1 TTTATCTTTA
*
91027753 ATTATCTTTA
1 TTTATCTTTA
91027763 TTTAT-TTGTA
1 TTTATCTT-TA
91027773 TTTATCTTT
1 TTTATCTTT
91027782 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.71
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:91030336 original size:27 final size:26
Alignment explanation
Indices: 91030306--91030501 Score: 257
Period size: 27 Copynumber: 7.3 Consensus size: 26
91030296 ATTACCAAAG
* *
91030306 TACCCTCGATTTAAAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTA-TGTTT
*
91030333 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTATAGAATTAT-GTTT
* *
91030360 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTA-TGTTT
**
91030387 TACCCTTAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTA-TGTTT
91030414 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTA-TGTTT
*
91030441 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTAT-GTTT
91030468 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTAT-GTTT
91030495 TACCCTC
1 TACCCTC
91030502 AATTGTGAAA
Statistics
Matches: 151, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 149 0.99
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (26 bp):
TACCCTCGATTTATAGAATTATGTTT
Found at i:91030407 original size:81 final size:81
Alignment explanation
Indices: 91030306--91030501 Score: 304
Period size: 81 Copynumber: 2.4 Consensus size: 81
91030296 ATTACCAAAG
* * *
91030306 TACCCTCGATTTAAAAAATTACTGTTTTACCCTCGATTTATAGAATTATCATTTTACCCTCGATT
1 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTATCATTTTACCCTCGATT
91030371 TACAGAATTACCGTTT
66 TACAGAATTACCGTTT
* **
91030387 TACCCTTAATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTATTGTTTTACCCTCGATT
1 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTATCATTTTACCCTCGATT
*
91030452 TACAGAATTATCGTTT
66 TACAGAATTACCGTTT
*
91030468 TACCCTCGATTTATAGAATTA-TCGTTTTACCCTC
1 TACCCTCAATTTATAGAATTACT-GTTTTACCCTC
91030502 AATTGTGAAA
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 104 0.99
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (81 bp):
TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTATCATTTTACCCTCGATT
TACAGAATTACCGTTT
Found at i:91030541 original size:27 final size:27
Alignment explanation
Indices: 91030510--91030663 Score: 150
Period size: 27 Copynumber: 5.7 Consensus size: 27
91030500 TCAATTGTGA
* * *
91030510 AATTACTGAAATACCCATGAAAGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
* *
91030537 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
*
91030564 AATTACCGAAATACCC-TGTAGGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
*
91030590 AATTACCAAAATACCCTTGT-AGGCTAG
1 AATTACCGAAATACCCTTGTAAGG-TAG
* * * * * *
91030617 AATTACCAAAAAACCCCTGGAGGGTAA
1 AATTACCGAAATACCCTTGTAAGGTAG
* *
91030644 AATTACGGAGATACCCTTGT
1 AATTACCGAAATACCCTTGT
91030664 GGGCTAAAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 27 0.25
27 78 0.73
28 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAAGGTAG
Found at i:91030578 original size:54 final size:53
Alignment explanation
Indices: 91030510--91030677 Score: 185
Period size: 54 Copynumber: 3.1 Consensus size: 53
91030500 TCAATTGTGA
* * *
91030510 AATTACTGAAATACCCATGAAAGGTAGAATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCC-TGAAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * *
91030564 AATTACCGAAATACCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGCTAG
1 AATTACCGAAATACCCTGAAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * * * * * *
91030617 AATTACCAAAAAACCCCTGGAGGGTAAAATTACGGAGATACCCTTGT-GGGCTAA
1 AATTACCGAAATA-CCCTGAAGGGTAGAATTACCGAAATACCCTTGTAGGG-TAG
91030671 AATTACC
1 AATTACC
91030678 ATTTTACCCT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 45 0.46
54 52 0.54
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (53 bp):
AATTACCGAAATACCCTGAAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
Found at i:91030594 original size:80 final size:80
Alignment explanation
Indices: 91030518--91030678 Score: 182
Period size: 80 Copynumber: 2.0 Consensus size: 80
91030508 GAAATTACTG
** * * * *
91030518 AAATACCCATGAAAGG-TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTG
1 AAATACCCATG-AAGGCTAGAATTACCAAAAAACCCCTGGAGGGTAAAATTACCGAAATACCCTG
91030582 TAGGGTAGAATTACCA
65 TAGGGTAGAATTACCA
* * * *
91030598 AAATACCCTTGTAGGCTAGAATTACCAAAAAACCCCTGGAGGGTAAAATTACGGAGATACCCTTG
1 AAATACCCATGAAGGCTAGAATTACCAAAAAACCCCTGGAGGGTAAAATTACCGAAATACCC-TG
*
91030663 T-GGGCTAAAATTACCA
65 TAGGG-TAGAATTACCA
91030679 TTTTACCCTT
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
79 3 0.04
80 51 0.76
81 13 0.19
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (80 bp):
AAATACCCATGAAGGCTAGAATTACCAAAAAACCCCTGGAGGGTAAAATTACCGAAATACCCTGT
AGGGTAGAATTACCA
Found at i:91030951 original size:24 final size:25
Alignment explanation
Indices: 91030880--91030962 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 25
91030870 AGGAAGTGCT
* * * *
91030880 AAAAGGGCTATGCCCCAGTTTA-CC
1 AAAAAGGCTTTGCCCTAGTTTATCA
*
91030904 AAAAAGGACTTTGGCCTAGTTTATCA
1 AAAAAGG-CTTTGCCCTAGTTTATCA
*
91030930 AAAAAGGCTTTGCCCTAG-TTATTA
1 AAAAAGGCTTTGCCCTAGTTTATCA
*
91030954 AAAGAGGCT
1 AAAAAGGCT
91030963 AGTTCTCCAG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
24 19 0.39
25 22 0.45
26 8 0.16
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (25 bp):
AAAAAGGCTTTGCCCTAGTTTATCA
Found at i:91031900 original size:11 final size:11
Alignment explanation
Indices: 91031884--91031910 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
91031874 AAAATTATTG
91031884 TTTTTTTCTTT
1 TTTTTTTCTTT
91031895 TTTTTTTCTTT
1 TTTTTTTCTTT
91031906 TTTTT
1 TTTTT
91031911 CGAAATTGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:91033394 original size:27 final size:27
Alignment explanation
Indices: 91033364--91033589 Score: 287
Period size: 27 Copynumber: 8.4 Consensus size: 27
91033354 ATTACCAAAG
*
91033364 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
** *
91033391 TACCCTAAATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
91033418 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
91033445 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
91033472 TATCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
91033499 T-CCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
91033525 TACCCTCGATTTACAGAATTA-TCATTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
91033552 TACCCTCGATTTATAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
91033579 TACCCTCGATT
1 TACCCTCGATT
91033590 GTGAAATTAC
Statistics
Matches: 169, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
26 24 0.14
27 145 0.86
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:91033422 original size:54 final size:54
Alignment explanation
Indices: 91033364--91033589 Score: 330
Period size: 54 Copynumber: 4.2 Consensus size: 54
91033354 ATTACCAAAG
* * **
91033364 TACCCTCGATTTACAAAATTACTGTTTTACCCTAAATTTATAGAATTATC-GTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTA-CAGTTT
**
91033418 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACAGTTT
* * *
91033472 TATCCTTGATTTACAGAATTACCGTTTT-CCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACAGTTT
* *
91033525 TACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACAGTTT
91033579 TACCCTCGATT
1 TACCCTCGATT
91033590 GTGAAATTAC
Statistics
Matches: 157, Mismatches: 13, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
53 48 0.31
54 109 0.69
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACAGTTT
Done.