Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 307 of 335
Found at i:91033579 original size:107 final size:108
Alignment explanation
Indices: 91033364--91033589 Score: 339
Period size: 107 Copynumber: 2.1 Consensus size: 108
91033354 ATTACCAAAG
*
91033364 TACCCTCGATTTACAAAATTACTGTTTTACCCTAAATTTATAGAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTAAATTTATAGAATTATCGTTTTACCCTCGATT
* **
91033429 TACAGAATTACCGTTTTACCCTCGATTTATAGAATTATTGTTT
66 TACAGAATTACCATTTTACCCTCGATTTATAGAATTACAGTTT
* * * **
91033472 TATCCTTGATTTACAGAATTACCGTTTT-CCCTCGATTTATAGAATTA-CTGTTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTAAATTTATAGAATTATC-GTTTTACCCTCGAT
*
91033535 TTACAGAATTATCATTTTACCCTCGATTTATAGAATTACAGTTT
65 TTACAGAATTACCATTTTACCCTCGATTTATAGAATTACAGTTT
91033579 TACCCTCGATT
1 TACCCTCGATT
91033590 GTGAAATTAC
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
106 1 0.01
107 80 0.76
108 24 0.23
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.42
Consensus pattern (108 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTAAATTTATAGAATTATCGTTTTACCCTCGATT
TACAGAATTACCATTTTACCCTCGATTTATAGAATTACAGTTT
Found at i:91033609 original size:80 final size:80
Alignment explanation
Indices: 91033364--91033610 Score: 250
Period size: 80 Copynumber: 3.1 Consensus size: 80
91033354 ATTACCAAAG
* *
91033364 TACCCTCGATTTACAAAATTA-CTGTTTTACCCTAAATTTATAGAATTATCGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTATC-GTTTTACCCTAGATTTATAGAATTA-CGTTTTACCCTCGAT
* * ***
91033428 TTACAGAATTACCGTTT
64 TTAAAGAATTACTGAAA
* * * * *
91033445 TACCCTCGATTTATAGAATTATTGTTTTATCCTTGATTTACAGAATTACCGTTTT-CCCTCGATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTAGATTTATAGAATTA-CGTTTTACCCTCGATT
* ***
91033509 TATAGAATTACTGTTT
65 TAAAGAATTACTGAAA
* *
91033525 TACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAGAATTACAGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTAGATTTATAGAATTAC-GTTTTACCCTCGATT
*
91033590 GT-GA-AATTACTGAAA
65 -TAAAGAATTACTGAAA
91033605 TACCCT
1 TACCCT
91033611 TGTAGGGTAG
Statistics
Matches: 142, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 84 0.59
81 56 0.39
82 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.41
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTATCGTTTTACCCTAGATTTATAGAATTACGTTTTACCCTCGATTT
AAAGAATTACTGAAA
Found at i:91033626 original size:27 final size:27
Alignment explanation
Indices: 91033594--91033762 Score: 250
Period size: 27 Copynumber: 6.3 Consensus size: 27
91033584 TCGATTGTGA
*
91033594 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
91033621 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
91033648 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
91033675 AATTACCAAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
91033702 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
91033729 AATTACCGAGATACCCTTGTGGGGTTA-
1 AATTACCGAAATACCCTTGTAGGG-TAG
91033756 AATTACC
1 AATTACC
91033763 ATTTTACCCC
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
27 128 0.98
28 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:91034003 original size:25 final size:24
Alignment explanation
Indices: 91033965--91034034 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
91033955 AAGAAGTGCT
*
91033965 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
91033989 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
* *
91034014 AAAAAGGATTGTGCCCCAGTT
1 AAAAGGGCTT-TGCCCCAGTT
91034035 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.20
25 32 0.80
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:91037060 original size:5 final size:5
Alignment explanation
Indices: 91037041--91037124 Score: 55
Period size: 5 Copynumber: 16.2 Consensus size: 5
91037031 AACCCAAATT
* * *
91037041 TTTTAA TTTTA TTTTT TTTTAA TTTTAA TTTTA TTATT- TATTA TTTAA
1 TTTT-A TTTTA TTTTA TTTT-A TTTT-A TTTTA TT-TTA TTTTA TTTTA
* * *
91037089 TTTTA CTTTA TTTTA TTATT- TATTA TTTTT TTTTA T
1 TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA T
91037125 ATTAATAAGT
Statistics
Matches: 61, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
4 4 0.07
5 39 0.64
6 18 0.30
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:91037060 original size:16 final size:17
Alignment explanation
Indices: 91037039--91037092 Score: 65
Period size: 16 Copynumber: 3.1 Consensus size: 17
91037029 GCAACCCAAA
91037039 TTTTTTAATTTT-ATTT
1 TTTTTTAATTTTAATTT
91037055 TTTTTTAATTTTAATTT
1 TTTTTTAATTTTAATTT
*
91037072 TATTATTTATTATTTAATTT
1 T-TT-TTTAAT-TTTAATTT
91037092 T
1 T
91037093 ACTTTATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
16 12 0.36
17 5 0.15
18 2 0.06
19 5 0.15
20 9 0.27
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTTTAATTTTAATTT
Found at i:91037068 original size:22 final size:21
Alignment explanation
Indices: 91037041--91037130 Score: 87
Period size: 20 Copynumber: 4.3 Consensus size: 21
91037031 AACCCAAATT
91037041 TTTTAATTTTATTTTTTTTTAA
1 TTTTAATTTTATTTTTTTTT-A
* *
91037063 TTTTAATTTTATTATTTATTA
1 TTTTAATTTTATTTTTTTTTA
* *
91037084 -TTTAATTTTACTTTATTTTA
1 TTTTAATTTTATTTTTTTTTA
*
91037104 TTATT--TATTATTTTTTTTTA
1 TT-TTAATTTTATTTTTTTTTA
*
91037124 TATTAAT
1 TTTTAAT
91037131 AAGTTTATCT
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
19 2 0.04
20 29 0.54
21 3 0.06
22 20 0.37
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTAATTTTATTTTTTTTTA
Found at i:91037122 original size:20 final size:20
Alignment explanation
Indices: 91037049--91037124 Score: 61
Period size: 23 Copynumber: 3.7 Consensus size: 20
91037039 TTTTTTAATT
91037049 TTATTTTTTTTTA--ATTT-
1 TTATTTTTTTTTATTATTTA
*
91037066 TAATTTTATTATTTATTATTTAA
1 TTATTTT-TT-TTTATTATTT-A
91037089 TT-TTACTTTATTTTATTATTTA
1 TTATT--TTT-TTTTATTATTTA
91037111 TTATTTTTTTTTAT
1 TTATTTTTTTTTAT
91037125 ATTAATAAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
17 6 0.13
18 2 0.04
19 4 0.09
20 6 0.13
21 7 0.15
22 5 0.11
23 14 0.30
24 3 0.06
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.75
Consensus pattern (20 bp):
TTATTTTTTTTTATTATTTA
Found at i:91037123 original size:30 final size:31
Alignment explanation
Indices: 91037037--91037123 Score: 108
Period size: 30 Copynumber: 2.9 Consensus size: 31
91037027 AGGCAACCCA
* *
91037037 AATTTT-TTAATT-TTATTTTTTTTTAATTTT
1 AATTTTATTATTTATTATTTTTTTTT-ACTTT
**
91037067 AATTTTATTATTTATTATTTAATTTTACTTT
1 AATTTTATTATTTATTATTTTTTTTTACTTT
91037098 -ATTTTATTATTTATTATTTTTTTTTA
1 AATTTTATTATTTATTATTTTTTTTTA
91037124 TATTAATAAG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
30 30 0.61
31 9 0.18
32 10 0.20
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.74
Consensus pattern (31 bp):
AATTTTATTATTTATTATTTTTTTTTACTTT
Found at i:91042594 original size:57 final size:57
Alignment explanation
Indices: 91042506--91042619 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
91042496 TGCGTGAATG
91042506 ACAGTAACTACATGAGGAGTTCTTCTGAACTTTTCTTCTTCCACATATTTATTTATT
1 ACAGTAACTACATGAGGAGTTCTTCTGAACTTTTCTTCTTCCACATATTTATTTATT
*
91042563 ACAGTAACTACATGGGGAGTTCTTCTGAACTTTTCTTCTTCCACATATTTATTTATT
1 ACAGTAACTACATGAGGAGTTCTTCTGAACTTTTCTTCTTCCACATATTTATTTATT
91042620 TTATTCCACA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.44
Consensus pattern (57 bp):
ACAGTAACTACATGAGGAGTTCTTCTGAACTTTTCTTCTTCCACATATTTATTTATT
Found at i:91043263 original size:23 final size:23
Alignment explanation
Indices: 91043233--91043278 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
91043223 TTGGACTAAG
91043233 TAACCGAGGTAGGGTGCTTCGCT
1 TAACCGAGGTAGGGTGCTTCGCT
91043256 TAACCGAGGTAGGGTGCTTCGCT
1 TAACCGAGGTAGGGTGCTTCGCT
91043279 GTCATCCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.22, G:0.35, T:0.26
Consensus pattern (23 bp):
TAACCGAGGTAGGGTGCTTCGCT
Found at i:91044092 original size:10 final size:10
Alignment explanation
Indices: 91044075--91044114 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
91044065 TACTTTTAGC
91044075 ATTTATCTTT
1 ATTTATCTTT
*
91044085 AATTATCTTT
1 ATTTATCTTT
91044095 ATTTAT-TTGT
1 ATTTATCTT-T
91044105 ATTTATCTTT
1 ATTTATCTTT
91044115 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:91046412 original size:30 final size:30
Alignment explanation
Indices: 91046378--91046440 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
91046368 ACTTATTTTA
91046378 TTGTTAATTTTGTTATTATTTTAAACGCAT
1 TTGTTAATTTTGTTATTATTTTAAACGCAT
* * *
91046408 TTGTTAATTTTTTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAACGCAT
91046438 TTG
1 TTG
91046441 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.05, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAACGCAT
Found at i:91049908 original size:79 final size:79
Alignment explanation
Indices: 91049777--91049936 Score: 302
Period size: 79 Copynumber: 2.0 Consensus size: 79
91049767 AAATGACAAC
91049777 TGTGTTGATGCATGGCCAACTTTTGCTGTCTTGAAATTAATATATTGAGACGTGGCTTTTGGATG
1 TGTGTTGATGCATGGCCAACTTTTGCTGTCTTGAAATTAATATATTGAGACGTGGCTTTTGGATG
91049842 GATAATTACATTGA
66 GATAATTACATTGA
* *
91049856 TGTGTTGATGTATGGCCAACTTTTGCTGTCTTGAAATTAATATGTTGAGACGTGGCTTTTGGATG
1 TGTGTTGATGCATGGCCAACTTTTGCTGTCTTGAAATTAATATATTGAGACGTGGCTTTTGGATG
91049921 GATAATTACATTGA
66 GATAATTACATTGA
91049935 TG
1 TG
91049937 CATGACCAGT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.24, C:0.11, G:0.25, T:0.40
Consensus pattern (79 bp):
TGTGTTGATGCATGGCCAACTTTTGCTGTCTTGAAATTAATATATTGAGACGTGGCTTTTGGATG
GATAATTACATTGA
Found at i:91050911 original size:30 final size:30
Alignment explanation
Indices: 91050868--91050926 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
91050858 CTTAACAAGC
91050868 AAATGTATCTAAAATAATAACAAAATTAAT
1 AAATGTATCTAAAATAATAACAAAATTAAT
*
91050898 AAATGTCAT-TAAAATAATAACCAAATTAA
1 AAATGT-ATCTAAAATAATAACAAAATTAA
91050927 CAATAAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.29
Consensus pattern (30 bp):
AAATGTATCTAAAATAATAACAAAATTAAT
Found at i:91050984 original size:22 final size:22
Alignment explanation
Indices: 91050959--91051001 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
91050949 TATCCAAACA
*
91050959 ATAACAACAAAATAGTAGCAAC
1 ATAACAAAAAAATAGTAGCAAC
* *
91050981 ATAATAAAAAAATGGTAGCAA
1 ATAACAAAAAAATAGTAGCAA
91051002 AATAGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.16
Consensus pattern (22 bp):
ATAACAAAAAAATAGTAGCAAC
Found at i:91057109 original size:20 final size:20
Alignment explanation
Indices: 91057086--91057128 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
91057076 TAAAATAATA
*
91057086 ATATGTACATAAAAATGCAT
1 ATATATACATAAAAATGCAT
* * *
91057106 ATATATATATATATATGCAT
1 ATATATACATAAAAATGCAT
91057126 ATA
1 ATA
91057129 ATAAAAGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.37
Consensus pattern (20 bp):
ATATATACATAAAAATGCAT
Found at i:91058715 original size:30 final size:30
Alignment explanation
Indices: 91058679--91058737 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
91058669 TAAAAAACAA
*
91058679 AAATT-AAAAGACTTAACTCAACTCTCGCAG
1 AAATTAAAAAG-CTCAACTCAACTCTCGCAG
*
91058709 AAATTAAAAAGCTCAACTCACCTCTCGCA
1 AAATTAAAAAGCTCAACTCAACTCTCGCA
91058738 ATATGAGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.42, C:0.27, G:0.08, T:0.22
Consensus pattern (30 bp):
AAATTAAAAAGCTCAACTCAACTCTCGCAG
Found at i:91058857 original size:88 final size:88
Alignment explanation
Indices: 91058760--91058922 Score: 229
Period size: 88 Copynumber: 1.9 Consensus size: 88
91058750 TTTTTTTGAA
* * * *
91058760 AAAAAACAGAAATTGAAAATAGCTC-AGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATG
1 AAAAAACAGAAATTGAAAATACCTCGA-CACGTGACCCAAGGCTCAACTCACATCTCACAATATG
91058824 AGTTGATTTTTGAAAACAGAATCT
65 AGTTGATTTTTGAAAACAGAATCT
** * * *
91058848 AAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCACAATGTGA
1 AAAAAACAGAAATTGAAAATACCTCGACACGTGACCCAAGGCTCAACTCACATCTCACAATATGA
91058913 GTTGATTTTT
66 GTTGATTTTT
91058923 TTGAAAAATA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
88 64 0.98
89 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (88 bp):
AAAAAACAGAAATTGAAAATACCTCGACACGTGACCCAAGGCTCAACTCACATCTCACAATATGA
GTTGATTTTTGAAAACAGAATCT
Found at i:91059052 original size:77 final size:74
Alignment explanation
Indices: 91058884--91059607 Score: 710
Period size: 72 Copynumber: 9.5 Consensus size: 74
91058874 ACATGTGACC
* * * * *
91058884 CGAGGCTCAACTCACATCTCACAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAATACC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTG-AAAATACC
* *
91058949 TCAGTGTGTGAT
64 TCAGCGTGT-CT
* *
91058961 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACC
*
91059026 TCAGCGCGTGAGC-
64 TCA--GCGTG-TCT
* * *
91059039 CAAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTTTTTGAAAGGCAGAAATTGAAAAT
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTTGAAA-ACAGAAATTGAAAAT
*
91059104 ACCTCGGCGTGTGAC-
61 ACCTCAGCGTGT--CT
* * * * *
91059119 CTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
91059184 CAGCGTGTC-
65 CAGCGTGTCT
*
91059193 CTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAAATACC
*
91059257 TCAGCATGTCT
64 TCAGCGTGTCT
* ** *
91059268 TGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAACAGAAATTGAAAATAC
*
91059333 CTCAGCATGTCT
63 CTCAGCGTGTCT
* * ** * *
91059345 TGAGGCTCAACTAATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTC
91059408 AGCGTGTCT
66 AGCGTGTCT
* ** * *
91059417 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTC
*
91059480 AACGTGTCT
66 AGCGTGTCT
* ** * *
91059489 TGAGGCTCAACTCATTTCTTGCGATATGAGTTGAATTTTTTTTTTGAAAGACAGAAATTGAAAAT
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A---TTTTTTTGAAA-ACAGAAATTGAAAAT
*
91059554 ACCTCAGCATGTGAAC-
61 ACCTCAGC--GTG-TCT
* *
91059570 CGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
91059608 GAAAAAGTAG
Statistics
Matches: 561, Mismatches: 58, Indels: 56
0.83 0.09 0.08
Matches are distributed among these distances:
72 136 0.24
73 8 0.01
74 89 0.16
76 24 0.04
77 122 0.22
78 61 0.11
79 30 0.05
80 3 0.01
81 87 0.16
82 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (74 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTC
AGCGTGTCT
Found at i:91059439 original size:223 final size:226
Alignment explanation
Indices: 91058719--91059612 Score: 874
Period size: 223 Copynumber: 3.9 Consensus size: 226
91058709 AAATTAAAAA
*
91058719 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAAAAACAGAAATTGAAAATAGCT
1 GCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTG---AAAAACAGAAATTGAAAATACCT
* ** * ** *
91058784 CAGCACGTGAGC-CAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATCT
61 CAG--CGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT--------TTTTT
* * ** * * * **
91058848 AAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCACAATGTG
115 GAAAGACAGAAATTGAAAATACCTCAG-CATGT-ACCTGAGGCTCAACTAACCTCTCACAATACG
* * * * * * *
91058912 AGTTGATTTTTTTGAAAAATATAAATTGAAAAATACCTCAGTGTGTGATCTGAA
178 AGTTGA-TATTTTG-AAAACAGAAATTG-AAATTACCTCAGCGTGT-CT-TGAG
* *
91058966 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCA--
* ** ** * *
91059031 GCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTTTTTGAAAGGCAGAA
63 GCGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTTTTGAAAGACAGAA
* * ** *
91059095 ATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTT
126 ATTGAAAATACCTCAGCATGT-ACCTGAGGCTCAACTAACCTCTCACAATACGAGTTGA-TATTT
* * *
91059160 TGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAG
189 TGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAG
*
91059198 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCG
*
91059263 TGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTTTGAAA-ACAGAAATTGA
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGA
* ** * *
91059327 AAATACCTCAGCATGT-CTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGA-ATTTTGAAAAC
131 AAATACCTCAGCATGTACCTGAGGCTCAACTAACCTCTCACAATACGAGTTGATATTTTGAAAAC
91059390 AGAAATTGAAATTACCTCAGCGTGTCTTGAG
196 AGAAATTGAAATTACCTCAGCGTGTCTTGAG
** * * *
91059421 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTG-AAAACAGAAATTGAAATTACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCG
* *
91059484 TGTCTTGAGGCTCAACTCATTTCTTGCGATATGAGTTGAATTTTTTTTTTGAAAGACAGAAATTG
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTTTTTTTGAAAGACAGAAATTG
* * * * *
91059549 AAAATACCTCAGCATGTGAACC-GAAGCTCAACTCACCTCTCGCAATATGAGCTG--ATTTTGAA
130 AAAATACCTCAGCATGT--ACCTGAGGCTCAACTAACCTCTCACAATACGAGTTGATATTTTGAA
91059611 AA
193 AA
91059613 AGTAGAAATT
Statistics
Matches: 572, Mismatches: 65, Indels: 43
0.84 0.10 0.06
Matches are distributed among these distances:
221 59 0.10
222 20 0.03
223 93 0.16
224 10 0.02
225 56 0.10
226 1 0.00
227 24 0.04
228 15 0.03
229 32 0.06
231 30 0.05
232 32 0.06
234 15 0.03
235 10 0.02
236 67 0.12
237 1 0.00
243 63 0.11
244 5 0.01
245 1 0.00
246 9 0.02
247 29 0.05
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (226 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCG
TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGA
AAATACCTCAGCATGTACCTGAGGCTCAACTAACCTCTCACAATACGAGTTGATATTTTGAAAAC
AGAAATTGAAATTACCTCAGCGTGTCTTGAG
Found at i:91059676 original size:54 final size:55
Alignment explanation
Indices: 91059576--91059681 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
91059566 GAACCGAAGC
* *
91059576 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
91059630 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
91059682 TAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:91059690 original size:13 final size:13
Alignment explanation
Indices: 91059672--91059696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91059662 TGAACAACAT
91059672 AAATTGAAAATAG
1 AAATTGAAAATAG
91059685 AAATTGAAAATA
1 AAATTGAAAATA
91059697 CCTCAGCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:91059742 original size:140 final size:140
Alignment explanation
Indices: 91059532--91060168 Score: 1123
Period size: 140 Copynumber: 4.5 Consensus size: 140
91059522 AATTTTTTTT
*
91059532 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAAGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
91059596 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
91059661 TTGAACAACATAAA
127 TTGAACAACGTAAA
* *
91059675 TTGAAAATAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
91059740 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
91059805 ACAACGTAAA
131 ACAACGTAAA
* *
91059815 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
91059880 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
91059945 ACAACGTAAA
131 ACAACGTAAA
* *
91059955 TTGAAAATAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
91060020 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
91060085 ACAACGTAAA
131 ACAACGTAAA
*
91060095 TTGAAAACAGAAACTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
91060160 TTGAATTTT
66 CTG-ATTTT
91060169 TTTGAAAAAT
Statistics
Matches: 476, Mismatches: 16, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
139 3 0.01
140 440 0.92
141 5 0.01
142 22 0.05
143 6 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:91059816 original size:54 final size:54
Alignment explanation
Indices: 91059716--91059821 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
91059706 GACCTGAGGC
*
91059716 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
91059770 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
91059822 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:91059956 original size:54 final size:54
Alignment explanation
Indices: 91059856--91059961 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
91059846 GACCCGAGGC
*
91059856 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
91059910 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
91059962 TAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:91059970 original size:13 final size:13
Alignment explanation
Indices: 91059952--91059976 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91059942 TGAACAACGT
91059952 AAATTGAAAATAG
1 AAATTGAAAATAG
91059965 AAATTGAAAATA
1 AAATTGAAAATA
91059977 CCTTAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:91060096 original size:54 final size:54
Alignment explanation
Indices: 91059996--91060101 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
91059986 GACCTGAGGC
*
91059996 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
91060050 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
91060102 CAGAAACTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:91060226 original size:90 final size:88
Alignment explanation
Indices: 91060050--91060276 Score: 302
Period size: 90 Copynumber: 2.6 Consensus size: 88
91060040 ATTAAAAGGT
* * * *
91060050 TCAACCCACCTCTCGCAATATGAGTTGA--TTCTTGAACAACGTAAATTGAAAACAGAAACTGAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAACAGAAACTGAA
*
91060113 AATACCTCAGCGTGACCTGAGGC
66 AATACCTCAACGTGACCTGAGGC
* *
91060136 TCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTGAAAAACATAAATTGAAAA-CAGAAACTG
*
91060201 AAATTACCTCAACGTG-CCTTGAGGC
64 AAAATACCTCAACGTGACC-TGAGGC
* *
91060226 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAGAAATTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAA
91060277 TTACCTCAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
86 26 0.21
87 21 0.17
89 23 0.18
90 55 0.44
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (88 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAACAGAAACTGAA
AATACCTCAACGTGACCTGAGGC
Found at i:91060277 original size:73 final size:72
Alignment explanation
Indices: 91060184--91060336 Score: 229
Period size: 73 Copynumber: 2.1 Consensus size: 72
91060174 AAAATATAAA
91060184 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCA-CTCTCGCAATATG
91060248 AGTTGATTT
64 AGTTGATTT
* * *
91060257 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTCTCGTAATATGA
1 TTGA-AAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACTCTCGCAATATGA
91060321 GTTGATTTT
65 GTTGA-TTT
91060330 TTGAAAA
1 TTGAAAA
91060337 ATAGATTGAA
Statistics
Matches: 74, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
72 20 0.27
73 49 0.66
74 5 0.07
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (72 bp):
TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACTCTCGCAATATGAG
TTGATTT
Found at i:91060394 original size:158 final size:162
Alignment explanation
Indices: 91060095--91060420 Score: 461
Period size: 158 Copynumber: 2.0 Consensus size: 162
91060085 ACAACGTAAA
91060095 TTGAAAACAGAAACTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAACTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
91060160 TTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGG
66 TTGAATTTTTTTGAAAAATATAAATTGAAAAGCAAAAATTGAAATTACCTCAACGTGCCTCGAGG
* *
91060225 CTCAACTCACCTCTCGCAATATGAGTTGATTT
131 CTCAACTCACCTCTCGCAATATGAATTGAATT
* * * * *
91060257 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-TTCTCGTAATATGA
1 TTGA-AAACAGAAACTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
91060321 GTTG-A-TTTTTTG-AAAA-ATAGATTGAAACA-CAAAAATTGACAA-TACCTCAGCGTGTCC-C
65 GTTGAATTTTTTTGAAAAATATAAATTGAAA-AGCAAAAATTGA-AATTACCTCAACGTG-CCTC
91060379 GAGGCTCAACTCACCTCTCGCAATATGAATTGAATT
127 GAGGCTCAACTCACCTCTCGCAATATGAATTGAATT
91060415 TTGAAA
1 TTGAAA
91060421 TAAAACATCA
Statistics
Matches: 149, Mismatches: 11, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
157 2 0.01
158 68 0.46
159 9 0.06
160 7 0.05
161 1 0.01
162 20 0.13
163 42 0.28
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (162 bp):
TTGAAAACAGAAACTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGAATTTTTTTGAAAAATATAAATTGAAAAGCAAAAATTGAAATTACCTCAACGTGCCTCGAGG
CTCAACTCACCTCTCGCAATATGAATTGAATT
Found at i:91068348 original size:12 final size:12
Alignment explanation
Indices: 91068326--91068361 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
91068316 TGGGATATGC
*
91068326 AATGAATGAATG
1 AATGCATGAATG
*
91068338 GATGCATGAATG
1 AATGCATGAATG
91068350 AATGCATGAATG
1 AATGCATGAATG
91068362 TCAAATGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:91068348 original size:16 final size:17
Alignment explanation
Indices: 91068322--91068353 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
91068312 AGTATGGGAT
91068322 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
91068339 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
91068354 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:91071549 original size:46 final size:46
Alignment explanation
Indices: 91071489--91071800 Score: 406
Period size: 46 Copynumber: 7.0 Consensus size: 46
91071479 TTTGACGTGA
* * * * ** * *
91071489 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* ** * * *
91071535 TGCCATGGTATCTTTCAACTATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
91071581 TGCCATGGTATCTTTCAACCATGGTCTTCCACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
91071627 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
91071673 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
91071719 TACCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
91071757 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
91071801 AGAGCACACT
Statistics
Matches: 239, Mismatches: 19, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
38 32 0.13
39 1 0.00
40 3 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 1 0.00
46 197 0.82
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:91071765 original size:38 final size:38
Alignment explanation
Indices: 91071714--91071789 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
91071704 CATTTCATAT
91071714 CAGGTTACCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTACCATGGTATCTTTCAACCATGGTCTTACACA
*
91071752 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTACCATGGTATCTTTCAACCATGGTCTTACACA
91071790 TTTCATATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (38 bp):
CAGGTTACCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:91086206 original size:18 final size:17
Alignment explanation
Indices: 91086185--91086232 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
91086175 AAACCCTTTT
*
91086185 AAAATTTAAAATTATTAA
1 AAAATTAAAAATTA-TAA
*
91086203 AAAACATAAAAATTATAA
1 AAAA-TTAAAAATTATAA
91086221 AAAATTCAAAAA
1 AAAATT-AAAAA
91086233 ATTTAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 1 0.04
18 16 0.64
19 8 0.32
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATTAAAAATTATAA
Found at i:91086231 original size:26 final size:27
Alignment explanation
Indices: 91086185--91086248 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
91086175 AAACCCTTTT
*
91086185 AAAATT-TAAAATTATTAAAAAACA-TA
1 AAAATTATAAAATAATTAAAAAA-ATTA
* *
91086211 AAAATTATAAAA-AATTCAAAAAATTT
1 AAAATTATAAAATAATTAAAAAAATTA
91086237 AAAATTATAAAA
1 AAAATTATAAAA
91086249 GTTTCATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 1 0.03
26 27 0.82
27 5 0.15
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (27 bp):
AAAATTATAAAATAATTAAAAAAATTA
Found at i:91086403 original size:20 final size:21
Alignment explanation
Indices: 91086372--91086424 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
91086362 AATTTATAAA
* *
91086372 TTTAAGAATTTT-ATAATTTT
1 TTTAATAATTTTCATAATTTG
* *
91086392 TTTTATAATTTTCATGATTTG
1 TTTAATAATTTTCATAATTTG
91086413 TTTAATAATTTT
1 TTTAATAATTTT
91086425 TAAATTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (21 bp):
TTTAATAATTTTCATAATTTG
Found at i:91087338 original size:18 final size:17
Alignment explanation
Indices: 91087315--91087348 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
91087305 TATAGGGACC
91087315 AAAATTGAAACTGTGACG
1 AAAATTGAAACT-TGACG
91087333 AAAATTGAAACTTGAC
1 AAAATTGAAACTTGAC
91087349 CATTGAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (17 bp):
AAAATTGAAACTTGACG
Found at i:91090319 original size:20 final size:21
Alignment explanation
Indices: 91090273--91090319 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
91090263 AATTCAACCA
* *
91090273 AATAAAATATAAAATTAATTT
1 AATAAAATATAAAACTAAATT
*
91090294 AA-AAAATA-AGAACTAAATT
1 AATAAAATATAAAACTAAATT
91090313 AATAAAA
1 AATAAAA
91090320 AAATTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 10 0.45
20 10 0.45
21 2 0.09
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (21 bp):
AATAAAATATAAAACTAAATT
Found at i:91091412 original size:22 final size:22
Alignment explanation
Indices: 91091365--91091412 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
91091355 ATATTAAAGT
*
91091365 TTTATGTATATAATTAAAATAT
1 TTTATGTATATAATTAAAATAA
* *
91091387 TTTATGTGTA-AATTAAATTAAA
1 TTTATGTATATAATTAAAAT-AA
91091409 TTTA
1 TTTA
91091413 AATTGATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (22 bp):
TTTATGTATATAATTAAAATAA
Found at i:91091960 original size:19 final size:20
Alignment explanation
Indices: 91091933--91091972 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
91091923 TAATTTTTTT
*
91091933 AATATTTATATTAA-ATAAA
1 AATAATTATATTAATATAAA
91091952 AATAATTATATTAATATAAA
1 AATAATTATATTAATATAAA
91091972 A
1 A
91091973 TGAAATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AATAATTATATTAATATAAA
Found at i:91094258 original size:13 final size:13
Alignment explanation
Indices: 91094240--91094268 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
91094230 ACAGGGCCAT
91094240 CCATACCATTAAC
1 CCATACCATTAAC
91094253 CCATACCATTAAC
1 CCATACCATTAAC
91094266 CCA
1 CCA
91094269 ATTACAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (13 bp):
CCATACCATTAAC
Found at i:91094514 original size:3 final size:3
Alignment explanation
Indices: 91094506--91094547 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
91094496 GTTGTCACTA
91094506 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91094548 CTTTATCTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:91097255 original size:49 final size:49
Alignment explanation
Indices: 91097183--91097281 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
91097173 AGATGAACCT
91097183 AAACACATCTTTAATCTAATTGGAAATGAGCAAACCGATTGAAACATTA
1 AAACACATCTTTAATCTAATTGGAAATGAGCAAACCGATTGAAACATTA
91097232 AAACACATCTTTAATCTAATTGGAAATGAGCAAACCGATTGAAACATTA
1 AAACACATCTTTAATCTAATTGGAAATGAGCAAACCGATTGAAACATTA
91097281 A
1 A
91097282 TATGACATCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.26
Consensus pattern (49 bp):
AAACACATCTTTAATCTAATTGGAAATGAGCAAACCGATTGAAACATTA
Found at i:91098908 original size:46 final size:46
Alignment explanation
Indices: 91098858--91099033 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
91098848 TGGTTGAGCA
*
91098858 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
91098904 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
91098951 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* ** *
91098997 CCCGGGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91099034 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:91099014 original size:93 final size:93
Alignment explanation
Indices: 91098855--91099026 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
91098845 GGATGGTTGA
* * *
91098855 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
91098920 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* **
91098948 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGGGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
91099013 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
91099027 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91104884 original size:46 final size:46
Alignment explanation
Indices: 91104642--91104919 Score: 380
Period size: 46 Copynumber: 6.0 Consensus size: 46
91104632 AGTGTGCTCT
* *
91104642 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
91104688 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATA-TCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACT-ATGGCAAC
* *
91104734 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
* * *
91104780 GTGATATGAAATGTGTAAGACCATAGTTGAAAGACACTATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
*
91104826 ATGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
* * * *
91104872 GTGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATG--T--GTAAGACCATGGTTGAAAGATACTATGGCA
91104920 TCATGTCAAA
Statistics
Matches: 209, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
45 1 0.00
46 179 0.86
48 1 0.00
50 28 0.13
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
Found at i:91107191 original size:27 final size:27
Alignment explanation
Indices: 91107161--91107305 Score: 109
Period size: 27 Copynumber: 5.4 Consensus size: 27
91107151 ACTACTCCGA
* *
91107161 GTTTACTGTCCTGACAAATTACCTCGT
1 GTTTACTGTCCTGACAGATTACCACGT
* **
91107188 GTTTACTGT--TGTAGAGGGCTACC-CTGT
1 GTTTACTGTCCTG-ACA-GATTACCAC-GT
* * * *
91107215 GTTTACTGTCCCGACGGACTATTC-CGT
1 GTTTACTGTCCTGACAGATTA-CCACGT
* *
91107242 GTTTACTGTCCTGACAAATTACCACAT
1 GTTTACTGTCCTGACAGATTACCACGT
*
91107269 GTTTACTGTCCTAACAGATTACCACGT
1 GTTTACTGTCCTGACAGATTACCACGT
*
91107296 GTCTACTGTC
1 GTTTACTGTC
91107306 TTAGCGGACT
Statistics
Matches: 92, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
25 2 0.02
26 4 0.04
27 82 0.89
28 3 0.03
29 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.35
Consensus pattern (27 bp):
GTTTACTGTCCTGACAGATTACCACGT
Found at i:91107303 original size:81 final size:81
Alignment explanation
Indices: 91107150--91107305 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
91107140 TGTTATGGAA
* * ** * *
91107150 GACTACTCCGAGTTTACTGTCCTGACAAATTACCTCGTGTTTACTGTTGTAGAGGGCTACCCTGT
1 GACTACTCCGAGTTTACTGTCCTGACAAATTACCACATGTTTACTGTCCTAGAAGACTACCCTGT
*
91107215 GTTTACTGTCCCGACG
66 GTCTACTGTCCCGACG
* * *
91107231 GACTATTCCGTGTTTACTGTCCTGACAAATTACCACATGTTTACTGTCCTA-ACAGATTACCAC-
1 GACTACTCCGAGTTTACTGTCCTGACAAATTACCACATGTTTACTGTCCTAGA-AGACTACC-CT
91107294 GTGTCTACTGTC
64 GTGTCTACTGTC
91107306 TTAGCGGACT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.02
81 61 0.97
82 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (81 bp):
GACTACTCCGAGTTTACTGTCCTGACAAATTACCACATGTTTACTGTCCTAGAAGACTACCCTGT
GTCTACTGTCCCGACG
Found at i:91111603 original size:12 final size:12
Alignment explanation
Indices: 91111586--91111610 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91111576 CTAGTTAAGG
91111586 TCGATTAACCGA
1 TCGATTAACCGA
91111598 TCGATTAACCGA
1 TCGATTAACCGA
91111610 T
1 T
91111611 TAAACACCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (12 bp):
TCGATTAACCGA
Found at i:91111656 original size:27 final size:27
Alignment explanation
Indices: 91111626--91111683 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
91111616 ACCCCTAATT
91111626 TATAATTTGATAGTTAACAACAAAAAA
1 TATAATTTGATAGTTAACAACAAAAAA
91111653 TATAATTTGATAGTTAACAACAAAAAA
1 TATAATTTGATAGTTAACAACAAAAAA
91111680 TATA
1 TATA
91111684 TGTAGTCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (27 bp):
TATAATTTGATAGTTAACAACAAAAAA
Found at i:91111961 original size:15 final size:15
Alignment explanation
Indices: 91111941--91111974 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
91111931 AGTATTTTAT
91111941 ATTTATATATAAAT-A
1 ATTTATAT-TAAATGA
91111956 ATTTATATTAAATGA
1 ATTTATATTAAATGA
91111971 ATTT
1 ATTT
91111975 TGATATTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
ATTTATATTAAATGA
Found at i:91116594 original size:27 final size:27
Alignment explanation
Indices: 91116564--91116617 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
91116554 TGGAGATGAT
*
91116564 AGTCTACGATCTATTTCGTAAGAACCA
1 AGTCTACGATCTATTTAGTAAGAACCA
*
91116591 AGTCTACGATCTATTTATTAAGAACCA
1 AGTCTACGATCTATTTAGTAAGAACCA
91116618 CAACCTTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.31
Consensus pattern (27 bp):
AGTCTACGATCTATTTAGTAAGAACCA
Found at i:91117353 original size:10 final size:10
Alignment explanation
Indices: 91117320--91117345 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
91117310 TCTAAATTTT
91117320 TGGACAAATA
1 TGGACAAATA
91117330 TGGACAAATA
1 TGGACAAATA
91117340 TGGACA
1 TGGACA
91117346 TCTATGGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.19
Consensus pattern (10 bp):
TGGACAAATA
Found at i:91117723 original size:18 final size:17
Alignment explanation
Indices: 91117680--91117713 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
91117670 ATAGTTTAAG
91117680 GTATAGAGAACAACTTT
1 GTATAGAGAACAACTTT
91117697 GTATAGAGAACAACTTT
1 GTATAGAGAACAACTTT
91117714 TGTTAAGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (17 bp):
GTATAGAGAACAACTTT
Found at i:91128582 original size:21 final size:21
Alignment explanation
Indices: 91128558--91128611 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
91128548 GCCTAAAACG
91128558 ACACACGAGGTGGCTGATACA
1 ACACACGAGGTGGCTGATACA
* *
91128579 ACACACGAAGTGGCTGATACG
1 ACACACGAGGTGGCTGATACA
*
91128600 ACACAGGAGGTG
1 ACACACGAGGTG
91128612 CCTAAAATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.31, T:0.13
Consensus pattern (21 bp):
ACACACGAGGTGGCTGATACA
Found at i:91128590 original size:42 final size:42
Alignment explanation
Indices: 91128532--91128611 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
91128522 CCTGATCAGA
*
91128532 ATACAACACATAAAGTGCCTAAAACGACACACGAGGTGGCTG
1 ATACAACACACAAAGTGCCTAAAACGACACACGAGGTGGCTG
* * * * *
91128574 ATACAACACACGAAGTGGCTGATACGACACAGGAGGTG
1 ATACAACACACAAAGTGCCTAAAACGACACACGAGGTG
91128612 CCTAAAATAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.39, C:0.23, G:0.25, T:0.14
Consensus pattern (42 bp):
ATACAACACACAAAGTGCCTAAAACGACACACGAGGTGGCTG
Found at i:91129471 original size:18 final size:19
Alignment explanation
Indices: 91129450--91129499 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
91129440 ATGTATTAGA
91129450 TATTAAATAA-ATATTTAT
1 TATTAAATAAGATATTTAT
91129468 TATTTTATAA-AAGATATTTAT
1 TA--TTA-AATAAGATATTTAT
91129489 TAATTAAATAA
1 T-ATTAAATAA
91129500 TTATATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
18 2 0.08
19 2 0.08
20 10 0.38
21 11 0.42
22 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TATTAAATAAGATATTTAT
Found at i:91132953 original size:21 final size:21
Alignment explanation
Indices: 91132936--91132975 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
91132926 ACACTTTCAA
91132936 TTTTC-CCTTTTC-TTCTTTC
1 TTTTCTCCTTTTCTTTCTTTC
*
91132955 TTTTCTCTTTTTCTTTCTTTC
1 TTTTCTCCTTTTCTTTCTTTC
91132976 CTTCCCCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTCTCCTTTTCTTTCTTTC
Found at i:91133411 original size:19 final size:21
Alignment explanation
Indices: 91133365--91133411 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
91133355 TATAATAAAT
* *
91133365 TAATTTAATATCATTTATTAC
1 TAATTAAATATCATATATTAC
91133386 TAA-TAAATAT-ATATATTA-
1 TAATTAAATATCATATATTAC
91133404 TAATTAAA
1 TAATTAAA
91133412 ATCTAAGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 3 0.13
19 11 0.48
20 6 0.26
21 3 0.13
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
TAATTAAATATCATATATTAC
Found at i:91135212 original size:31 final size:32
Alignment explanation
Indices: 91135171--91135233 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
91135161 TTATTTATAA
*
91135171 AAGATATTTAT-TAATTAAATA-ATTATATTAT
1 AAGATATTTATGTAA-TAAATATATTAAATTAT
*
91135202 AAGATTTTTATGTAATAAATATATTAAATTAT
1 AAGATATTTATGTAATAAATATATTAAATTAT
91135234 GACAAGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (32 bp):
AAGATATTTATGTAATAAATATATTAAATTAT
Found at i:91135365 original size:15 final size:16
Alignment explanation
Indices: 91135340--91135394 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 16
91135330 AAAGTAAAAC
91135340 AAAAGAAAAAGAAATG
1 AAAAGAAAAAGAAATG
*
91135356 AAAA-AAAAAGAGATAG
1 AAAAGAAAAAGAAAT-G
*
91135372 AAAAGAAACAG-AATG
1 AAAAGAAAAAGAAATG
*
91135387 AAACGAAA
1 AAAAGAAA
91135395 CAGAGAGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
15 17 0.52
16 11 0.33
17 5 0.15
ACGTcount: A:0.73, C:0.04, G:0.18, T:0.05
Consensus pattern (16 bp):
AAAAGAAAAAGAAATG
Found at i:91135373 original size:21 final size:21
Alignment explanation
Indices: 91135330--91135379 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
91135320 ATATATATAT
*
91135330 AAAGTAAAACAAAAGAAAAAGA
1 AAAG-AAAAAAAAAGAAAAAGA
* * *
91135352 AATGAAAAAAAAAGAGATAGA
1 AAAGAAAAAAAAAGAAAAAGA
91135373 AAAGAAA
1 AAAGAAA
91135380 CAGAATGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.06
Consensus pattern (21 bp):
AAAGAAAAAAAAAGAAAAAGA
Found at i:91139713 original size:26 final size:26
Alignment explanation
Indices: 91139677--91139786 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
91139667 CATGAAATTC
91139677 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
91139703 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91139729 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
91139755 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91139781 TTATCA
1 TTATCA
91139787 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:91140277 original size:18 final size:18
Alignment explanation
Indices: 91140256--91140446 Score: 142
Period size: 18 Copynumber: 10.6 Consensus size: 18
91140246 TAACTGATTA
*
91140256 TTACTGAATAATTAACTG
1 TTACTGAATAATTGACTG
* *
91140274 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
91140292 TTACT-AGAT-ATTAGACTG
1 TTACTGA-ATAATT-GACTG
* * *
91140310 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
91140328 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
91140346 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
91140364 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
*
91140382 TTACTGAATAACTT-AGTTG
1 TTACTGAATAA-TTGA-CTG
** *
91140401 TTACTGAATACCTGA-TT
1 TTACTGAATAATTGACTG
*
91140418 TTACTAAATAATTGACTG
1 TTACTGAATAATTGACTG
*
91140436 TTACTGGATAA
1 TTACTGAATAA
91140447 CCGATCAATT
Statistics
Matches: 137, Mismatches: 24, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
17 19 0.14
18 98 0.72
19 20 0.15
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:91142360 original size:28 final size:28
Alignment explanation
Indices: 91142327--91142382 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
91142317 TTTTAAAAAG
91142327 TAAATTTTGAAAAATT-TTATAAATATTT
1 TAAATTTT-AAAAATTATTATAAATATTT
*
91142355 TAAATTTTAAAAATTATTTTAAATATTT
1 TAAATTTTAAAAATTATTATAAATATTT
91142383 GAAAATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 7 0.27
28 19 0.73
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
TAAATTTTAAAAATTATTATAAATATTT
Found at i:91142389 original size:20 final size:19
Alignment explanation
Indices: 91142338--91142402 Score: 87
Period size: 20 Copynumber: 3.4 Consensus size: 19
91142328 AAATTTTGAA
*
91142338 AAATTTTATAAA-TATTTT
1 AAATTTTAAAAATTATTTT
91142356 AAATTTTAAAAATTATTTT
1 AAATTTTAAAAATTATTTT
*
91142375 AAATATTTGAAAATTATTTT
1 AAAT-TTTAAAAATTATTTT
*
91142395 AATTTTTA
1 AAATTTTA
91142403 TATGTAATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
18 11 0.27
19 13 0.32
20 17 0.41
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
AAATTTTAAAAATTATTTT
Found at i:91146673 original size:19 final size:20
Alignment explanation
Indices: 91146633--91146673 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
91146623 CACATGTATG
*
91146633 TATTTTATATACGTAATTAA
1 TATTTTATATACGTAATGAA
91146653 TATTATTATATA-GT-ATGAA
1 TATT-TTATATACGTAATGAA
91146672 TA
1 TA
91146674 CAAATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 6 0.32
20 6 0.32
21 7 0.37
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (20 bp):
TATTTTATATACGTAATGAA
Found at i:91147206 original size:30 final size:30
Alignment explanation
Indices: 91147172--91147229 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
91147162 AAAAATACAA
*
91147172 AAATAATATTATTTATATTTATATTTATAT
1 AAATAATATTATATATATTTATATTTATAT
* *
91147202 AAATAATATTATATGTGTTTATATTTAT
1 AAATAATATTATATATATTTATATTTAT
91147230 TTATAATTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (30 bp):
AAATAATATTATATATATTTATATTTATAT
Found at i:91154033 original size:19 final size:19
Alignment explanation
Indices: 91154009--91154048 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
91153999 ATCTAAAAAC
*
91154009 AATCAATTCGTATTTAGCT
1 AATCAATTCATATTTAGCT
91154028 AATCAATTCATATTTAGCT
1 AATCAATTCATATTTAGCT
91154047 AA
1 AA
91154049 CATATGTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (19 bp):
AATCAATTCATATTTAGCT
Found at i:91154655 original size:26 final size:26
Alignment explanation
Indices: 91154620--91154781 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
91154610 TGATACAAAT
*
91154620 TGATAATAGGTTAGGTAAATGTTCCT
1 TGATAATAGGTTAGGTAAATGTTCCA
91154646 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
91154672 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91154698 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91154724 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91154750 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91154776 TGATAA
1 TGATAA
91154782 GAATTTCATA
Statistics
Matches: 131, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 131 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:91156292 original size:26 final size:26
Alignment explanation
Indices: 91156263--91156315 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
91156253 TTTACAGTTT
91156263 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
91156289 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
91156315 T
1 T
91156316 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:91160498 original size:26 final size:26
Alignment explanation
Indices: 91160463--91160624 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
91160453 TGATACAAAT
*
91160463 TGATAATAGGTTAGGTAAATGTTCCT
1 TGATAATAGGTTAGGTAAATGTTCCA
91160489 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
91160515 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91160541 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91160567 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91160593 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91160619 TGATAA
1 TGATAA
91160625 GAATTTCATG
Statistics
Matches: 131, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 131 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:91165895 original size:17 final size:18
Alignment explanation
Indices: 91165852--91165895 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
91165842 AAGTTTCGTG
*
91165852 TTTTCTTTTCCATTTCTT
1 TTTTTTTTTCCATTTCTT
* *
91165870 TTCTTTTTTCC-TTTGTT
1 TTTTTTTTTCCATTTCTT
91165887 TTTTTTTTT
1 TTTTTTTTT
91165896 GTTCTATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTTTTTTCCATTTCTT
Found at i:91167002 original size:69 final size:69
Alignment explanation
Indices: 91166891--91167030 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
91166881 ATATCATATG
*
91166891 TTAGTTTTATGAATGCCCTCATTCAAAAGATGGATGCCATATTTATATTTTCTAATTCTTGGTTT
1 TTAGTTTTATGAATGCCCTCAATCAAAAGATGGATGCCATATTTATATTTTCTAATTCTTGGTTT
91166956 TCTA
66 TCTA
*
91166960 TTAGTTTTATGAATGCCCTCAATCAAAAGATGGATGTCATATTTATATTTTCTAATTCTTGGTTT
1 TTAGTTTTATGAATGCCCTCAATCAAAAGATGGATGCCATATTTATATTTTCTAATTCTTGGTTT
91167025 TCTA
66 TCTA
91167029 TT
1 TT
91167031 TATAGTATTT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.26, C:0.14, G:0.13, T:0.47
Consensus pattern (69 bp):
TTAGTTTTATGAATGCCCTCAATCAAAAGATGGATGCCATATTTATATTTTCTAATTCTTGGTTT
TCTA
Found at i:91167929 original size:31 final size:31
Alignment explanation
Indices: 91167891--91167964 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
91167881 AAAGCTAAAG
91167891 GAAAGAAAATGAATATAGTAAAGTAAGGAAT
1 GAAAGAAAATGAATATAGTAAAGTAAGGAAT
91167922 GAAAGAAAATGAATATAGTAAAGTAAGGAAT
1 GAAAGAAAATGAATATAGTAAAGTAAGGAAT
*
91167953 GAGATGAAAATG
1 GA-AAGAAAATG
91167965 GAAAATCAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 33 0.80
32 8 0.20
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.19
Consensus pattern (31 bp):
GAAAGAAAATGAATATAGTAAAGTAAGGAAT
Found at i:91173695 original size:27 final size:25
Alignment explanation
Indices: 91173665--91173731 Score: 64
Period size: 27 Copynumber: 2.6 Consensus size: 25
91173655 ATATTTAAAA
*
91173665 ATTAGATTAATTTATATTTTATGTAT
1 ATTAGATTAATTTATATTTTAT-CAT
* *
91173691 CATTATATTAAATTTCATGTTTTATCAT
1 -ATTAGATT-AATTT-ATATTTTATCAT
91173719 ATTAGATT-ATTTA
1 ATTAGATTAATTTA
91173732 AATATTATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
24 1 0.03
25 4 0.12
27 14 0.41
28 7 0.21
29 8 0.24
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.55
Consensus pattern (25 bp):
ATTAGATTAATTTATATTTTATCAT
Found at i:91173744 original size:23 final size:22
Alignment explanation
Indices: 91173718--91173761 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
91173708 TGTTTTATCA
91173718 TATTAGAT-TATTTAAATATTATT
1 TATTA-ATATATTTAAA-ATTATT
*
91173741 TATTATTATATTTAAAATTAT
1 TATTAATATATTTAAAATTAT
91173762 AAAATATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TATTAATATATTTAAAATTATT
Found at i:91180512 original size:30 final size:31
Alignment explanation
Indices: 91180454--91180516 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
91180444 CTTAACAAGT
*
91180454 AAATGTCTCTAAAATAATAAAAAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAAATTAAC
* *
91180485 AAATGCCTTTAAAATAAT-AACAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAAATTAAC
91180515 AA
1 AA
91180517 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.25
Consensus pattern (31 bp):
AAATGCCTCTAAAATAATAAAAAAAATTAAC
Found at i:91206706 original size:79 final size:80
Alignment explanation
Indices: 91206571--91206761 Score: 221
Period size: 79 Copynumber: 2.4 Consensus size: 80
91206561 TCGAATGATG
* *
91206571 TCGGGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCGGGCTAAGTCCCGAAGGCATTG-G-TACGAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
*
91206634 TGTGCGAGTTACTA-AT
64 TGTGCGAGTTACTATAA
* **
91206650 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 T-CGGGCTAAGTCCCGAAGGCATTGGTACGAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
*
91206713 TGTGCTAGTTACTATAA
64 TGTGCGAGTTACTATAA
* * *
91206730 TCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCGGGCTAAGTCCCGAAGGCATTGGTACGAGT
91206762 AGCTATATCC
Statistics
Matches: 96, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
77 2 0.02
78 2 0.02
79 62 0.65
80 30 0.31
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCGGGCTAAGTCCCGAAGGCATTGGTACGAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:91206768 original size:40 final size:41
Alignment explanation
Indices: 91206572--91206773 Score: 206
Period size: 40 Copynumber: 5.1 Consensus size: 41
91206562 CGAATGATGT
* * *
91206572 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-ATC
1 CGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTATAATC
* * *
91206612 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTATAATC
*
91206652 CGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAATC
* * *
91206691 CGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAAT-
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAATC
* *
91206731 CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT-ATC
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTA-CTATAATC
91206771 CGG
1 CGG
91206774 TTGAATTCCG
Statistics
Matches: 137, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
39 38 0.28
40 88 0.64
41 11 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (41 bp):
CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAATC
Found at i:91206785 original size:79 final size:79
Alignment explanation
Indices: 91206617--91206787 Score: 206
Period size: 79 Copynumber: 2.2 Consensus size: 79
91206607 ATATCCGGAC
* * *
91206617 TAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTACGAGT
1 TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGT
91206682 TACTAAATCCGGGT
66 TACTAAATCCGGGT
* * * *
91206696 TAAGTCCCGAAGGCATTTGTGCTAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTTCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAG-CCCGAAGGCATTGGAACGA
*
91206760 G-TAGCTATATCC-GGT
64 GTTA-CTAAATCCGGGT
91206775 TGAA-TTCCGAAGG
1 T-AAGTTCCGAAGG
91206788 TACGTGATTC
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
79 50 0.63
80 29 0.37
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGT
TACTAAATCCGGGT
Found at i:91210057 original size:53 final size:53
Alignment explanation
Indices: 91209916--91210066 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
91209906 ATAAGTGCGC
* **
91209916 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
91209969 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
91210022 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
91210067 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:91217557 original size:53 final size:53
Alignment explanation
Indices: 91217416--91217566 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
91217406 ATAAGTGCGC
* **
91217416 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
91217469 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
91217522 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
91217567 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:91218808 original size:17 final size:17
Alignment explanation
Indices: 91218770--91218809 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
91218760 AGAAGAGTCA
* *
91218770 GCCAAACCTTAGAGTTC
1 GCCAAACCTTAAAGATC
*
91218787 ACCAAACCTTAAAGATC
1 GCCAAACCTTAAAGATC
91218804 GCCAAA
1 GCCAAA
91218810 TGGTTAATTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.17
Consensus pattern (17 bp):
GCCAAACCTTAAAGATC
Found at i:91219089 original size:29 final size:30
Alignment explanation
Indices: 91219067--91219129 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
91219057 TCATGTTTAT
*
91219067 AATTG-CATCAAAACAAAGTTCATATATCA
1 AATTGACATCAAAACAAAGTTCATGTATCA
*
91219096 AATTGTACATTAAAACAAAGTTCATGTAT-A
1 AATTG-ACATCAAAACAAAGTTCATGTATCA
91219126 AATT
1 AATT
91219130 TAATATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 5 0.17
30 5 0.17
31 20 0.67
ACGTcount: A:0.48, C:0.13, G:0.08, T:0.32
Consensus pattern (30 bp):
AATTGACATCAAAACAAAGTTCATGTATCA
Found at i:91226227 original size:53 final size:53
Alignment explanation
Indices: 91226086--91226236 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
91226076 ATAAGTGCGC
* **
91226086 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
91226139 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
91226192 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
91226237 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:91233730 original size:53 final size:53
Alignment explanation
Indices: 91233589--91233739 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
91233579 ATAAGTGCGC
* **
91233589 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
91233642 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* * *
91233695 CCGTATAAGACTAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
91233740 ACCGTGTAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:91234983 original size:17 final size:17
Alignment explanation
Indices: 91234945--91234984 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
91234935 AGAAGAGTCA
* *
91234945 GCCAAACCTTAGAGTTC
1 GCCAAACCTTAAAGATC
*
91234962 ACCAAACCTTAAAGATC
1 GCCAAACCTTAAAGATC
91234979 GCCAAA
1 GCCAAA
91234985 TGGTTAATTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.17
Consensus pattern (17 bp):
GCCAAACCTTAAAGATC
Found at i:91235265 original size:29 final size:30
Alignment explanation
Indices: 91235243--91235305 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
91235233 TCATGTTTAT
*
91235243 AATTG-CATCAAAACAAAGTTCATATATCA
1 AATTGACATCAAAACAAAGTTCATGTATCA
*
91235272 AATTGTACATTAAAACAAAGTTCATGTAT-A
1 AATTG-ACATCAAAACAAAGTTCATGTATCA
91235302 AATT
1 AATT
91235306 TAATATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 5 0.17
30 5 0.17
31 20 0.67
ACGTcount: A:0.48, C:0.13, G:0.08, T:0.32
Consensus pattern (30 bp):
AATTGACATCAAAACAAAGTTCATGTATCA
Found at i:91235682 original size:23 final size:24
Alignment explanation
Indices: 91235643--91235687 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
91235633 TAGACATAAT
*
91235643 ACTAACATTATAGAAA-TAAAGAC
1 ACTAACATTATACAAATTAAAGAC
91235666 ACTAA-ATTATATCAAATTAAAG
1 ACTAACATTATA-CAAATTAAAG
91235688 TGCAAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 8 0.42
24 5 0.26
ACGTcount: A:0.56, C:0.11, G:0.07, T:0.27
Consensus pattern (24 bp):
ACTAACATTATACAAATTAAAGAC
Found at i:91237699 original size:11 final size:13
Alignment explanation
Indices: 91237662--91237692 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
91237652 ATTTTAATTG
*
91237662 TTTTATTTAAATA
1 TTTTATATAAATA
91237675 TTTTATATAAATA
1 TTTTATATAAATA
91237688 TTTTA
1 TTTTA
91237693 AAAATATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTTATATAAATA
Found at i:91252369 original size:19 final size:20
Alignment explanation
Indices: 91252332--91252379 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
91252322 CCAGTAAAAT
*
91252332 GTTTTCTGGAAAATGATTTA
1 GTTTTCTGGAAAATAATTTA
91252352 GTTTTCTGG-AAATAATTTA
1 GTTTTCTGGAAAATAATTTA
*
91252371 CTTTTCTGG
1 GTTTTCTGG
91252380 TGTTTGGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 17 0.65
20 9 0.35
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (20 bp):
GTTTTCTGGAAAATAATTTA
Found at i:91252483 original size:20 final size:20
Alignment explanation
Indices: 91252460--91252499 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
91252450 CTATTTTTAC
91252460 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
91252480 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
91252500 TTTAAACTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATTAATAAATTTATAT
Found at i:91252504 original size:16 final size:18
Alignment explanation
Indices: 91252455--91252499 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
91252445 AAAATCTATT
* *
91252455 TTTACATATATTAATAAA
1 TTTATATATTTTAATAAA
91252473 TTTATATATATATTAATAAA
1 TTTATATAT-T-TTAATAAA
91252493 TTTATAT
1 TTTATAT
91252500 TTTAAACTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATTTTAATAAA
Found at i:91255383 original size:24 final size:23
Alignment explanation
Indices: 91255355--91255406 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 23
91255345 CCTTAGAAAG
91255355 AGAGATTTGCCTTTGCTTGAGAA
1 AGAGATTTGCCTTTGCTTGAGAA
91255378 ATGAGATTTGCCTTTGCTTGAGAA
1 A-GAGATTTGCCTTTGCTTGAGAA
91255402 AGAGA
1 AGAGA
91255407 GAAAAAGAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (23 bp):
AGAGATTTGCCTTTGCTTGAGAA
Found at i:91256984 original size:22 final size:22
Alignment explanation
Indices: 91256956--91257005 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
91256946 CCGTGTGGAT
*
91256956 CACACGACCTGGTCCAGAATTC
1 CACACGACCTGATCCAGAATTC
91256978 CACACGACCTGATCCAGAATTC
1 CACACGACCTGATCCAGAATTC
91257000 CACACG
1 CACACG
91257006 CCCGTGTGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.30, C:0.38, G:0.16, T:0.16
Consensus pattern (22 bp):
CACACGACCTGATCCAGAATTC
Found at i:91258527 original size:18 final size:18
Alignment explanation
Indices: 91258506--91258540 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91258496 GTAATATTTA
*
91258506 TTTATTCAGTATCAGTCG
1 TTTATTCAGTAACAGTCG
*
91258524 TTTATTCTGTAACAGTC
1 TTTATTCAGTAACAGTC
91258541 AATTATTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (18 bp):
TTTATTCAGTAACAGTCG
Found at i:91258701 original size:6 final size:6
Alignment explanation
Indices: 91258690--91258742 Score: 106
Period size: 6 Copynumber: 8.8 Consensus size: 6
91258680 CACCGCAACG
91258690 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA
91258738 GTAAC
1 GTAAC
91258743 GGTACACAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
GTAACA
Found at i:91264402 original size:23 final size:21
Alignment explanation
Indices: 91264374--91264417 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 21
91264364 TTTATTTGGC
91264374 ATATTATTTTTTTGATTATTTTA
1 ATATTATTTTTTT-ATT-TTTTA
91264397 ATATTATTTTTTTATTTTTTA
1 ATATTATTTTTTTATTTTTTA
91264418 TGTAGGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 5 0.24
22 3 0.14
23 13 0.62
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (21 bp):
ATATTATTTTTTTATTTTTTA
Found at i:91264412 original size:11 final size:11
Alignment explanation
Indices: 91264375--91264416 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
91264365 TTATTTGGCA
91264375 TATTATTTTTT
1 TATTATTTTTT
**
91264386 TGATTATTTTAA
1 T-ATTATTTTTT
91264398 TATTATTTTTT
1 TATTATTTTTT
91264409 TATT-TTTT
1 TATTATTTT
91264417 ATGTAGGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 4 0.15
11 13 0.50
12 9 0.35
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (11 bp):
TATTATTTTTT
Found at i:91268358 original size:46 final size:46
Alignment explanation
Indices: 91268295--91268522 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
91268285 TTTGACATGA
* * * * * *
91268295 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
* *** * *
91268341 TGCCATGGTATCCTTCAACCATGGTCTTGTTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
91268387 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
91268433 TGCCATGGTATCTTTCAACCATGGTCTTACACATTACATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
91268479 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
91268523 AGAGCACACT
Statistics
Matches: 163, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 159 0.98
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:91275130 original size:7 final size:7
Alignment explanation
Indices: 91275114--91275153 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
91275104 GCCAAAACAG
*
91275114 AATCATA
1 AATCAAA
*
91275121 AATCAGA
1 AATCAAA
*
91275128 AATAAAA
1 AATCAAA
91275135 AATCAAA
1 AATCAAA
91275142 AATCAAA
1 AATCAAA
91275149 AATCA
1 AATCA
91275154 GAATCCTACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.68, C:0.12, G:0.03, T:0.17
Consensus pattern (7 bp):
AATCAAA
Found at i:91279687 original size:5 final size:5
Alignment explanation
Indices: 91279677--91279707 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
91279667 GAACAAATAT
91279677 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
91279708 ATTCCATCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (5 bp):
ATTCG
Found at i:91282774 original size:18 final size:20
Alignment explanation
Indices: 91282742--91282778 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
91282732 CCAAGCATGA
91282742 ATAACAAAAATTATAAAATC
1 ATAACAAAAATTATAAAATC
91282762 ATAA-AAAAA-TATAAAAT
1 ATAACAAAAATTATAAAAT
91282779 ATTATTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 5 0.29
20 4 0.24
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
ATAACAAAAATTATAAAATC
Found at i:91288428 original size:32 final size:32
Alignment explanation
Indices: 91288392--91288456 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
91288382 AAACACTTAG
*
91288392 TAAGTATTTCAAGTATTCACAATTTGCACATT
1 TAAGTATTCCAAGTATTCACAATTTGCACATT
91288424 TAAGTATTCCAAGTATTCACAATTTGCACATT
1 TAAGTATTCCAAGTATTCACAATTTGCACATT
91288456 T
1 T
91288457 TATTAATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (32 bp):
TAAGTATTCCAAGTATTCACAATTTGCACATT
Found at i:91297966 original size:13 final size:13
Alignment explanation
Indices: 91297946--91297978 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
91297936 TGACAAAAGT
91297946 AAAA-AAAAAAAA
1 AAAAGAAAAAAAA
91297958 AAAAGAAAAAAAA
1 AAAAGAAAAAAAA
*
91297971 AAGAGAAA
1 AAAAGAAA
91297979 GTATTTTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAA
Found at i:91297973 original size:11 final size:11
Alignment explanation
Indices: 91297946--91297974 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
91297936 TGACAAAAGT
91297946 AAAAAA-AAAA
1 AAAAAAGAAAA
91297956 AAAAAAGAAAA
1 AAAAAAGAAAA
91297967 AAAAAAGA
1 AAAAAAGA
91297975 GAAAGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:91300803 original size:27 final size:27
Alignment explanation
Indices: 91300770--91300849 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
91300760 CTATCCAGGT
* *
91300770 AGACTACCCCGTATTTATTGTCCCAAT
1 AGACTACCCCGTGTTTATTGTCCCAAC
* * * * *
91300797 AGGCTACACTGTGTTTACTGTCCCGAC
1 AGACTACCCCGTGTTTATTGTCCCAAC
*
91300824 AGACTACCTCCTTGTTTATTGTCCCA
1 AGACTACC-CCGTGTTTATTGTCCCA
91300850 GCGAACTACA
Statistics
Matches: 39, Mismatches: 13, Indels: 1
0.74 0.25 0.02
Matches are distributed among these distances:
27 26 0.67
28 13 0.33
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.34
Consensus pattern (27 bp):
AGACTACCCCGTGTTTATTGTCCCAAC
Found at i:91305798 original size:43 final size:43
Alignment explanation
Indices: 91305737--91305823 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
91305727 AAGAAAAAGA
91305737 AAGATTTTTGTTTGGTATTCTTCATGTCTGTTATACAGTTTAT
1 AAGATTTTTGTTTGGTATTCTTCATGTCTGTTATACAGTTTAT
91305780 AAGATTTTTGTTTGGTATTCTTCATGTCTGTTATACAGTTTAT
1 AAGATTTTTGTTTGGTATTCTTCATGTCTGTTATACAGTTTAT
91305823 A
1 A
91305824 TTCGAAGGTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.53
Consensus pattern (43 bp):
AAGATTTTTGTTTGGTATTCTTCATGTCTGTTATACAGTTTAT
Found at i:91308257 original size:3 final size:3
Alignment explanation
Indices: 91308249--91308290 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
91308239 GGGTTTTTTA
91308249 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
91308291 TTGGAGGGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:91315283 original size:16 final size:16
Alignment explanation
Indices: 91315241--91315287 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
91315231 GATTTAATAT
*
91315241 TTAATTTAATATTTATT
1 TTAATTTAATA-TTATA
* *
91315258 TTGA-TAAATATTATA
1 TTAATTTAATATTATA
91315273 TTAATTTAATATTAT
1 TTAATTTAATATTAT
91315288 TGTGATTAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
15 7 0.29
16 14 0.58
17 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TTAATTTAATATTATA
Found at i:91316162 original size:35 final size:35
Alignment explanation
Indices: 91316113--91316181 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
91316103 TCGTAAGAGG
*
91316113 CCACCGCTTTTACTAGTTGACTGCCTACAAACGTA
1 CCACCGCTTGTACTAGTTGACTGCCTACAAACGTA
*
91316148 CCACCGCTTGTACTAGTTGATTGCCTACAAACGT
1 CCACCGCTTGTACTAGTTGACTGCCTACAAACGT
91316182 TCTAACACCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (35 bp):
CCACCGCTTGTACTAGTTGACTGCCTACAAACGTA
Found at i:91320761 original size:17 final size:18
Alignment explanation
Indices: 91320707--91320848 Score: 164
Period size: 17 Copynumber: 7.9 Consensus size: 18
91320697 AATCATATCT
*
91320707 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
*
91320726 TCTAATATTGCAATCATA
1 TCTAAGATTGCAATCATA
* **
91320744 TCTAATATTG-TGTCATA
1 TCTAAGATTGCAATCATA
*
91320761 TCTAATATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
91320779 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
91320796 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
* *
91320814 TTTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
91320831 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
91320849 TGAAGATTAT
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
17 46 0.43
18 45 0.42
19 15 0.14
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:91320765 original size:35 final size:35
Alignment explanation
Indices: 91320707--91320848 Score: 212
Period size: 35 Copynumber: 4.0 Consensus size: 35
91320697 AATCATATCT
*
91320707 TCTAAGATTGTATATCATATCTAATATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
* * *
91320744 TCTAATATTGTGTCATATCTAATATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
91320779 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
91320814 TTTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
91320849 TGAAGATTAT
Statistics
Matches: 98, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
35 84 0.86
36 5 0.05
37 9 0.09
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:91325900 original size:13 final size:14
Alignment explanation
Indices: 91325881--91325913 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
91325871 AACAAAGTAA
91325881 AAAATAAA-AAAAT
1 AAAATAAATAAAAT
*
91325894 TAAATAAATAAAAT
1 AAAATAAATAAAAT
91325908 AAAATA
1 AAAATA
91325914 TCTAATTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:91326016 original size:71 final size:72
Alignment explanation
Indices: 91325875--91326016 Score: 214
Period size: 71 Copynumber: 2.0 Consensus size: 72
91325865 ATTATTAACA
* *
91325875 AAGTAAAAAATAAAAAAATTAAATAAATAAAATAAAATATCTAATTTAGTAATTAAGTCTGCCAT
1 AAGTAAAAAATAAAAAAATTAAATAAATAAAATAAAATAACTAATTTAGTAATTAAGTCTGCAAT
91325940 ACAAAAT
66 ACAAAAT
* * * *
91325947 AAGTAAAAGA-AAAACAATTAACTAAATAAAATAAAATAACTAATTTAGTAATTAAGTTTGCAAT
1 AAGTAAAAAATAAAAAAATTAAATAAATAAAATAAAATAACTAATTTAGTAATTAAGTCTGCAAT
*
91326011 GCAAAA
66 ACAAAA
91326017 GAAAAGTAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
71 54 0.86
72 9 0.14
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (72 bp):
AAGTAAAAAATAAAAAAATTAAATAAATAAAATAAAATAACTAATTTAGTAATTAAGTCTGCAAT
ACAAAAT
Found at i:91326409 original size:15 final size:15
Alignment explanation
Indices: 91326389--91326418 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
91326379 ACTTCAATGG
91326389 TTAATTTATAACAAA
1 TTAATTTATAACAAA
91326404 TTAATTTATAACAAA
1 TTAATTTATAACAAA
91326419 CATTGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
TTAATTTATAACAAA
Found at i:91326964 original size:21 final size:21
Alignment explanation
Indices: 91326940--91326979 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
91326930 AATATCTATT
*
91326940 ACTTAAAATAACTAAAAATTA
1 ACTTAAAACAACTAAAAATTA
91326961 ACTTAAAACAACTAAAAAT
1 ACTTAAAACAACTAAAAAT
91326980 AATATAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (21 bp):
ACTTAAAACAACTAAAAATTA
Done.