Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 309 of 335
Found at i:91581266 original size:64 final size:64
Alignment explanation
Indices: 91581189--91581404 Score: 357
Period size: 64 Copynumber: 3.4 Consensus size: 64
91581179 AAACTTAGTT
*
91581189 TTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAATCTAATTGAAATAAACA
1 TTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAATCTAATTGGAATAAACA
91581253 TTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAATCTAATTGGAATAAACA
1 TTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAATCTAATTGGAATAAACA
* * *
91581317 TTGTAATATAAATTTTTTTATATAAATTAAATACATTACAACATTAA---AATTGGAACAAACT
1 TTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAATCTAATTGGAATAAACA
* *
91581378 TTGTAATATAATTTTTTTTATATAAAT
1 TTGTAATATAAATTTTGTTATATAAAT
91581405 CACATGGACT
Statistics
Matches: 147, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
61 38 0.26
64 109 0.74
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.42
Consensus pattern (64 bp):
TTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAATCTAATTGGAATAAACA
Found at i:91584683 original size:18 final size:17
Alignment explanation
Indices: 91584619--91584686 Score: 50
Period size: 18 Copynumber: 3.8 Consensus size: 17
91584609 ATAAGTGATG
* *
91584619 TTTTGAAAATTAATAATG
1 TTTTGAAAATGAATAA-C
*
91584637 TTTTGAAAGA-GTATAAC
1 TTTTGAAA-ATGAATAAC
91584654 -TTTGTAATAATGAATAAC
1 TTTTG-AA-AATGAATAAC
91584672 ATTTTGAAAATGAAT
1 -TTTTGAAAATGAAT
91584687 GACACGTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
16 4 0.10
17 3 0.08
18 26 0.65
19 3 0.08
20 4 0.10
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.40
Consensus pattern (17 bp):
TTTTGAAAATGAATAAC
Found at i:91591553 original size:18 final size:18
Alignment explanation
Indices: 91591492--91591559 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
91591482 AGTGATATTT
* *
91591492 TGAAAATTAATAACGTTT
1 TGAAAATGAATAACGTTA
* * *
91591510 TGAAAGA-GTATAGCTTTA
1 TGAAA-ATGAATAACGTTA
91591528 T-AATAATGAATAACGTTA
1 TGAA-AATGAATAACGTTA
91591546 TGAAAATGAATAAC
1 TGAAAATGAATAAC
91591560 ACATTCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
17 3 0.08
18 32 0.84
19 3 0.08
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (18 bp):
TGAAAATGAATAACGTTA
Found at i:91598578 original size:27 final size:27
Alignment explanation
Indices: 91598505--91598578 Score: 62
Period size: 26 Copynumber: 2.7 Consensus size: 27
91598495 AATCACTTAA
* **
91598505 TTTTTAATTATTAAAATTAATTACTACTT
1 TTTTTAATT-TTAAAATT-ATTACCAAAT
**
91598534 TTTTATAATTTT--TTTTATTACCAAAT
1 TTTT-TAATTTTAAAATTATTACCAAAT
91598560 TTTTTAATTTTAAAATTAT
1 TTTTTAATTTTAAAATTAT
91598579 ATTTTTTATT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
25 7 0.20
26 11 0.31
27 6 0.17
29 6 0.17
30 5 0.14
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (27 bp):
TTTTTAATTTTAAAATTATTACCAAAT
Found at i:91598582 original size:21 final size:24
Alignment explanation
Indices: 91598558--91598606 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 24
91598548 TTATTACCAA
91598558 ATTTTTTAATT-TTAA-A-ATTAT
1 ATTTTTTAATTGTTAATATATTAT
*
91598579 ATTTTTTATTTGTTAATATATTAT
1 ATTTTTTAATTGTTAATATATTAT
91598603 ATTT
1 ATTT
91598607 AAAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 10 0.42
22 4 0.17
23 1 0.04
24 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (24 bp):
ATTTTTTAATTGTTAATATATTAT
Found at i:91598694 original size:2 final size:2
Alignment explanation
Indices: 91598687--91598724 Score: 67
Period size: 2 Copynumber: 18.5 Consensus size: 2
91598677 TGCAAACTAG
91598687 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
91598725 TAATTAGTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 33 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91598979 original size:28 final size:27
Alignment explanation
Indices: 91598948--91599001 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 27
91598938 AACAAATTGA
* *
91598948 AAAAAACTATTATAAAAGTATAATATGC
1 AAAAAACCATTAAAAAAGTAT-ATATGC
* *
91598976 AAAATACCCTTAAAAAAGTATATATG
1 AAAAAACCATTAAAAAAGTATATATG
91599002 TTAAACTAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.56, C:0.09, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAAAACCATTAAAAAAGTATATATGC
Found at i:91603985 original size:40 final size:40
Alignment explanation
Indices: 91603912--91604017 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 40
91603902 AATAGTGTTG
* *
91603912 ATTTTACCAGATTTTTTTAATATTTTCTTCTCATCAAACAA
1 ATTTTACCAGATTTTCTT-ATATTTTATTCTCATCAAACAA
* * *
91603953 ATTTTACCAAATTTTCGTATATTTTATTCTCATCAAATAA
1 ATTTTACCAGATTTTCTTATATTTTATTCTCATCAAACAA
* *
91603993 TTTTTACCAGATTTTCTTACATTTT
1 ATTTTACCAGATTTTCTTATATTTT
91604018 CTCATCAACC
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
40 41 0.73
41 15 0.27
ACGTcount: A:0.30, C:0.16, G:0.03, T:0.51
Consensus pattern (40 bp):
ATTTTACCAGATTTTCTTATATTTTATTCTCATCAAACAA
Found at i:91608186 original size:2 final size:2
Alignment explanation
Indices: 91608181--91608206 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
91608171 AATTTCATTC
91608181 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
91608207 TCATTCCTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91608391 original size:25 final size:26
Alignment explanation
Indices: 91608331--91608392 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
91608321 ATATTCGAGT
*
91608331 TGCTAACACTAGCTTCAGATCAAAGT
1 TGCTAACACTAGCTTCAGATCAAAGC
* *
91608357 TGCTAACACTAGCTT-AG-TACGATGC
1 TGCTAACACTAGCTTCAGAT-CAAAGC
91608382 TGCTAACACTA
1 TGCTAACACTA
91608393 ACTTTAGAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.03
25 16 0.50
26 15 0.47
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
TGCTAACACTAGCTTCAGATCAAAGC
Found at i:91609316 original size:36 final size:36
Alignment explanation
Indices: 91609269--91609341 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
91609259 CAAAATATAC
91609269 TTCCGATTTACTTTCTCGTGCCAATATTACTCACAA
1 TTCCGATTTACTTTCTCGTGCCAATATTACTCACAA
91609305 TTCCGATTTACTTTCTCGTGCCAATATTACTCACAA
1 TTCCGATTTACTTTCTCGTGCCAATATTACTCACAA
91609341 T
1 T
91609342 AAGACTGTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.27, G:0.08, T:0.40
Consensus pattern (36 bp):
TTCCGATTTACTTTCTCGTGCCAATATTACTCACAA
Found at i:91611956 original size:2 final size:2
Alignment explanation
Indices: 91611945--91611981 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
91611935 GCTTAAATGG
91611945 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91611982 TTAGCAGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:91612743 original size:2 final size:2
Alignment explanation
Indices: 91612732--91612764 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
91612722 AAACATCGTA
91612732 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91612765 GATTTAAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:91614610 original size:10 final size:10
Alignment explanation
Indices: 91614564--91614614 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
91614554 AAGTTATTAT
*
91614564 ATAATAAATC
1 ATAATTAATC
*
91614574 ATAATTAAAC
1 ATAATTAATC
91614584 -TAATTAATC
1 ATAATTAATC
*
91614593 TTTAATTAATC
1 -ATAATTAATC
91614604 ATAATTAATC
1 ATAATTAATC
91614614 A
1 A
91614615 CGTTTAACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
9 8 0.23
10 18 0.51
11 9 0.26
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (10 bp):
ATAATTAATC
Found at i:91614610 original size:21 final size:20
Alignment explanation
Indices: 91614575--91614613 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
91614565 TAATAAATCA
91614575 TAATTAAACTAATTAATCTT
1 TAATTAAACTAATTAATCTT
*
91614595 TAATTAATCATAATTAATC
1 TAATTAAAC-TAATTAATC
91614614 ACGTTTAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (20 bp):
TAATTAAACTAATTAATCTT
Found at i:91615772 original size:26 final size:26
Alignment explanation
Indices: 91615719--91615828 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
91615709 TGATACAAAT
91615719 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * * * *
91615745 TGACAATTGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91615771 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91615797 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
91615823 TGATAA
1 TGATAA
91615829 GAACTTCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:91617842 original size:137 final size:137
Alignment explanation
Indices: 91617596--91617882 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
91617586 GAGTAGTCTC
*
91617596 CCCAAATGGGCTTTCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
91617661 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGACCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGACCAGTACC
91617726 ACTGTTA
131 ACTGTTA
91617733 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
91617798 TGTTATCTGAATAAGGGGTTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGACCAGTACC
91617863 ACTGTTA
131 ACTGTTA
**
91617870 CCTGAATGGGCTT
1 CCCAAATGGGCTT
91617883 AGGCTCAATG
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGACCAGTACC
ACTGTTA
Found at i:91620374 original size:528 final size:528
Alignment explanation
Indices: 91619378--91620411 Score: 1960
Period size: 528 Copynumber: 2.0 Consensus size: 528
91619368 AACATCGAAA
91619378 TTAACAGGTTTGTGAACACTCACACACACGATGTTGACTTTTCATAATGTTGATGTAAAATTCCA
1 TTAACAGGTTTGTGAACACTCACACACACGATGTTGACTTTTCATAATGTTGATGTAAAATTCCA
91619443 AAATAAGACAAAAAAGATACGAAACCCACACCTGATTCGACGACGGAGAAGCGAAATTCTTCGAT
66 AAATAAGACAAAAAAGATACGAAACCCACACCTGATTCGACGACGGAGAAGCGAAATTCTTCGAT
91619508 ATCTATGCAGCGAAAACCGTTTTCCCCAAGCGAAAGAAAGAAGAAGAAAAAATAGCAAAAAAAGC
131 ATCTATGCAGCGAAAACCGTTTTCCCCAAGCGAAAGAAAGAAGAAGAAAAAATAGCAAAAAAAGC
91619573 AAAACCAAAAATAAAAAGAAAATAAAATAAAATAACAGTAAAGAAGAAAAAAAAACGTCCCAAAG
196 AAAACCAAAAATAAAAAGAAAATAAAATAAAATAACAGTAAAGAAGAAAAAAAAACGTCCCAAAG
91619638 ACAAACTAAAAATAAATAAAGAAATAATTTATTAATTATATATTAAATTAAAACAACACAACAAA
261 ACAAACTAAAAATAAATAAAGAAATAATTTATTAATTATATATTAAATTAAAACAACACAACAAA
* * *
91619703 ACAGAACAGAACAAAAATATTCCTCCAAAAAGTGCACACAAGGACTCAAGCTAAGGACCTAAAGG
326 ACAGAACAGAACAAAAATATTCCTCCAAAAAGTACACACAAGAACTCAAGCCAAGGACCTAAAGG
*
91619768 TAAGCTAACACACACTCAACCATCAAACTAGCAAGCACATTCTAACACTTGCATGCCCCATTAAA
391 TAAGCTAACACACACTCAACCATCAAACTAGCAAGCACATTCTAACACTTGCATACCCCATTAAA
91619833 TACAATAGCGCAACCTTCTCACTGACCCTAACTACAAAACCTAAAAACTTCATAATGTTGACTTT
456 TACAATAGCGCAACCTTCTCACTGACCCTAACTACAAAACCTAAAAACTTCATAATGTTGACTTT
91619898 TCATAATG
521 TCATAATG
* *
91619906 TTAACAGGTTTGTGAACACTCACACACACGATGTTTACTTTTCATAATGTTGATGTAAAATTCTA
1 TTAACAGGTTTGTGAACACTCACACACACGATGTTGACTTTTCATAATGTTGATGTAAAATTCCA
*
91619971 AAATAAGACAAAAAAGATACGAAACCCACACCTGATTCGACGATGGAGAAGCGAAATTCTTCGAT
66 AAATAAGACAAAAAAGATACGAAACCCACACCTGATTCGACGACGGAGAAGCGAAATTCTTCGAT
*
91620036 ATCTATGCAGCGAAAACCGTTTTCCCCAAGCGAAAGAAAGAAGAATAAAAAATAGCAAAAAAAGC
131 ATCTATGCAGCGAAAACCGTTTTCCCCAAGCGAAAGAAAGAAGAAGAAAAAATAGCAAAAAAAGC
*
91620101 AAAACCAAAAATAAAAAGAAAATAAAATAAAATAACAGTAAAGAAGAAAAAAGAACGTCCCAAAG
196 AAAACCAAAAATAAAAAGAAAATAAAATAAAATAACAGTAAAGAAGAAAAAAAAACGTCCCAAAG
91620166 ACAAACTAAAAATAAATAAAGAAATAATTTATTAATTATATATTAAATTAAAACAACACAACAAA
261 ACAAACTAAAAATAAATAAAGAAATAATTTATTAATTATATATTAAATTAAAACAACACAACAAA
*
91620231 ATAGAACAGAACAAAAATATTCCTCCAAAAAGTACACACAAGAACTCAAGCCAAGGACCTAAAGG
326 ACAGAACAGAACAAAAATATTCCTCCAAAAAGTACACACAAGAACTCAAGCCAAGGACCTAAAGG
* *
91620296 TAAGCTAACACACACTTAACCATCAGACTAGCAAGCACATTCTAACACTTGCATACCCCATTAAA
391 TAAGCTAACACACACTCAACCATCAAACTAGCAAGCACATTCTAACACTTGCATACCCCATTAAA
91620361 TACAATAGCGCAACCTTCTCACTGACCCTAACTACAAAACCTAAAAACTTC
456 TACAATAGCGCAACCTTCTCACTGACCCTAACTACAAAACCTAAAAACTTC
91620412 TAACCCTAAA
Statistics
Matches: 494, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
528 494 1.00
ACGTcount: A:0.49, C:0.20, G:0.12, T:0.20
Consensus pattern (528 bp):
TTAACAGGTTTGTGAACACTCACACACACGATGTTGACTTTTCATAATGTTGATGTAAAATTCCA
AAATAAGACAAAAAAGATACGAAACCCACACCTGATTCGACGACGGAGAAGCGAAATTCTTCGAT
ATCTATGCAGCGAAAACCGTTTTCCCCAAGCGAAAGAAAGAAGAAGAAAAAATAGCAAAAAAAGC
AAAACCAAAAATAAAAAGAAAATAAAATAAAATAACAGTAAAGAAGAAAAAAAAACGTCCCAAAG
ACAAACTAAAAATAAATAAAGAAATAATTTATTAATTATATATTAAATTAAAACAACACAACAAA
ACAGAACAGAACAAAAATATTCCTCCAAAAAGTACACACAAGAACTCAAGCCAAGGACCTAAAGG
TAAGCTAACACACACTCAACCATCAAACTAGCAAGCACATTCTAACACTTGCATACCCCATTAAA
TACAATAGCGCAACCTTCTCACTGACCCTAACTACAAAACCTAAAAACTTCATAATGTTGACTTT
TCATAATG
Found at i:91629931 original size:5 final size:5
Alignment explanation
Indices: 91629925--91629963 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
91629915 AAATTAAAAC
* * *
91629925 AACAC AACAA AACAG AACAT AACAG AACAG AACAG AACA
1 AACAG AACAG AACAG AACAG AACAG AACAG AACAG AACA
91629964 AAAATATTCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.64, C:0.23, G:0.10, T:0.03
Consensus pattern (5 bp):
AACAG
Found at i:91629943 original size:10 final size:10
Alignment explanation
Indices: 91629925--91629966 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
91629915 AAATTAAAAC
*
91629925 AACACAACAA
1 AACAGAACAA
*
91629935 AACAGAACAT
1 AACAGAACAA
*
91629945 AACAGAACAG
1 AACAGAACAA
91629955 AACAGAACAA
1 AACAGAACAA
91629965 AA
1 AA
91629967 ATATTCCTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.67, C:0.21, G:0.10, T:0.02
Consensus pattern (10 bp):
AACAGAACAA
Found at i:91629948 original size:15 final size:15
Alignment explanation
Indices: 91629925--91629966 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
91629915 AAATTAAAAC
91629925 AACACAACAAAACAG
1 AACACAACAAAACAG
* *
91629940 AACATAACAGAACAG
1 AACACAACAAAACAG
*
91629955 AACAGAACAAAA
1 AACACAACAAAA
91629967 ATATTCCTCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.67, C:0.21, G:0.10, T:0.02
Consensus pattern (15 bp):
AACACAACAAAACAG
Found at i:91631791 original size:31 final size:32
Alignment explanation
Indices: 91631738--91631797 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 32
91631728 CCAATAATCA
* *
91631738 AAACCCAATACACAGAAGCCC-AAACCCTTAC
1 AAACCCAAAACACAAAAGCCCAAAACCCTTAC
* *
91631769 AAACCCAAAACCCAAAATCCCAAAACCCT
1 AAACCCAAAACACAAAAGCCCAAAACCCT
91631798 AATCAGCCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 17 0.71
32 7 0.29
ACGTcount: A:0.48, C:0.40, G:0.03, T:0.08
Consensus pattern (32 bp):
AAACCCAAAACACAAAAGCCCAAAACCCTTAC
Found at i:91632921 original size:3 final size:3
Alignment explanation
Indices: 91632900--91632935 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
91632890 ATCCATGTTT
* *
91632900 TTA TTA TTC TTA TTC TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
91632936 GGTATTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:91645892 original size:74 final size:73
Alignment explanation
Indices: 91645763--91646113 Score: 349
Period size: 74 Copynumber: 4.8 Consensus size: 73
91645753 TTTGGGTACT
* * ** ** *
91645763 CTGAGGTATCTTTAATTCATGTTTTCAAAAATTAACTCATATTATGAGAAATGAGTTGAGCCTCA
1 CTGAGGTATTTTTAATTTATG-TTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCA
91645828 GGTCACACG
65 GGTCACACG
*
91645837 CTGAGGTATTTTTAATTTATGTTTCAAAAAATTAACTCATATTGCGAGAGGTGAGTCAAGCCTCA
1 CTGAGGTATTTTTAATTTATGTTTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCA
91645902 GGTCACACG
65 GGTCACACG
* * * * * *
91645911 CTGAGGTGTTTTTAGTTTATGTTTTAAAAATTGACTCATAGTGCGAGAGGTGAGTCAAGCCTCAG
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCAG
91645976 GT--CACG
66 GTCACACG
* * * * *
91645982 TTGAGGTA-TTTTAATTCCTTTTGTTTCAAAAATCAGCTCATATTGCGAG-GGTGAGTTGAGCCT
1 CTGAGGTATTTTTAA-T--TTATGTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCT
**
91646045 C-GG-GGCACG
63 CAGGTCACACG
* * * * * * *
91646054 CCGGGGTATTCTTAGTTTATGTTT--TAAATTGACTCAAATTGCGAGAGGTGAGTTAAGCCT
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCT
91646114 TTTAATTTTT
Statistics
Matches: 233, Mismatches: 36, Indels: 21
0.80 0.12 0.07
Matches are distributed among these distances:
68 16 0.07
69 13 0.06
70 12 0.05
71 13 0.06
72 23 0.10
73 73 0.31
74 83 0.36
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.34
Consensus pattern (73 bp):
CTGAGGTATTTTTAATTTATGTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCAG
GTCACACG
Found at i:91646247 original size:54 final size:52
Alignment explanation
Indices: 91646185--91646348 Score: 166
Period size: 55 Copynumber: 3.0 Consensus size: 52
91646175 GCTGAGGTAT
** *
91646185 TTTCAATTTTTTGTGTTTTAATTTCAACTCGTATTGCGAGAGGTGAGTTGAGCC
1 TTTCAATTTTTT-T-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
** * *
91646239 TTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACC
1 TTTCAATTT-T-TTTTT-TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * *
91646294 TTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTCAATTT-T-TTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
91646348 T
1 T
91646349 CAGGTCACGC
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
54 44 0.48
55 46 0.50
56 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (52 bp):
TTTCAATTTTTTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:91646256 original size:126 final size:123
Alignment explanation
Indices: 91646005--91646290 Score: 362
Period size: 126 Copynumber: 2.3 Consensus size: 123
91645995 ATTCCTTTTG
* *
91646005 TTTCAAAAATCAGCTCATATTGCGAG-GGTGAGTTGAGCCTCGGGGCACGCCGGGGTATTCTTAG
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTCTTAG
* * * *
91646069 TTTATGTTTTAAATTGACTCAAATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTT
66 TTTATGTTTTAAATTAACTCAAATTGCGAGAGGTGAGTTAAGCCTTTCAATTTATATT
* *
91646127 TTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT-TTCA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTCTT--
* * * ** *
91646190 ATTTTTTGTGTTTTAATTTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATATT
64 A--GTTTATGTTTTAAATT-AACTCAAATTGCGAGAGGTGAGTTAAGCCTTTCAATTTATATT
*
91646253 TTTCAAAAAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
91646291 ACCTTTTAAT
Statistics
Matches: 140, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
121 21 0.15
122 35 0.25
123 1 0.01
125 13 0.09
126 40 0.29
128 30 0.21
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (123 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTCTTAG
TTTATGTTTTAAATTAACTCAAATTGCGAGAGGTGAGTTAAGCCTTTCAATTTATATT
Found at i:91646275 original size:55 final size:54
Alignment explanation
Indices: 91646208--91646348 Score: 203
Period size: 55 Copynumber: 2.6 Consensus size: 54
91646198 TGTTTTAATT
*
91646208 TCAACTCGTATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATA-TTTTTCAAAAAA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATACTTTTTC--AAAA
* * * *
91646263 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATACTTTTTCAAAA
*
91646317 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
91646349 CAGGTCACGC
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.43
55 38 0.49
56 6 0.08
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (54 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATACTTTTTCAAAA
Found at i:91646464 original size:88 final size:87
Alignment explanation
Indices: 91646307--91646524 Score: 289
Period size: 88 Copynumber: 2.5 Consensus size: 87
91646297 TAATTTCTAC
* * *
91646307 TTTTTC-AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCCGAGGTATTTTC
* *
91646371 AATTTCT-GTTTTCATTATT-ATG
66 AATTTCTACTTTCCA--ATTCATG
* * * *
91646393 TTTTTGAAAGAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTTT
1 TTTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCCGAGGTATTTT
*
91646458 CAATTTCTACTTTCCAATTCTTG
65 CAATTTCTACTTTCCAATTCATG
*
91646481 TTTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
91646525 TCAATTTATA
Statistics
Matches: 115, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
86 5 0.04
87 38 0.33
88 67 0.58
89 5 0.04
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (87 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCCGAGGTATTTTC
AATTTCTACTTTCCAATTCATG
Found at i:91646627 original size:55 final size:54
Alignment explanation
Indices: 91646479--91646688 Score: 278
Period size: 56 Copynumber: 3.8 Consensus size: 54
91646469 TTCCAATTCT
* *
91646479 TGTTTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTCAATTTA
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTA
* *
91646533 TATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1 TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTA
* *
91646589 TGTTTTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CCTTTTAATTTT
1 TG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTTTTAATTTA
* * * * *
91646644 TGTCTTTCAAAAATCAACCCATATGGTGAGAAGTGAGTTGAGCCT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
91646689 CGGGTCATAT
Statistics
Matches: 138, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
53 1 0.01
54 42 0.30
55 44 0.32
56 45 0.33
57 6 0.04
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (54 bp):
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTA
Found at i:91647032 original size:45 final size:45
Alignment explanation
Indices: 91646925--91647020 Score: 174
Period size: 45 Copynumber: 2.1 Consensus size: 45
91646915 GACTTGGTCT
*
91646925 CCCTGAAGCTACAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCC
1 CCCTGAAGCTGCAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCC
*
91646970 CCCTGAAGCTGCAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCT
1 CCCTGAAGCTGCAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCC
91647015 CCCTGA
1 CCCTGA
91647021 GGTCGCAGTG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (45 bp):
CCCTGAAGCTGCAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCC
Found at i:91647574 original size:32 final size:32
Alignment explanation
Indices: 91647520--91647580 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
91647510 CCAATAATCA
* * *
91647520 AAACCCAATACACAGAAGCCCAAACCCCTTAC
1 AAACCCAAAACACAAAAGCCCAAAACCCTTAC
* *
91647552 AAACCCAAAACCCAAAATCCCAAAACCCT
1 AAACCCAAAACACAAAAGCCCAAAACCCT
91647581 AATCAGCCGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.48, C:0.41, G:0.03, T:0.08
Consensus pattern (32 bp):
AAACCCAAAACACAAAAGCCCAAAACCCTTAC
Found at i:91648719 original size:12 final size:12
Alignment explanation
Indices: 91648699--91648730 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
91648689 TCCATGTTTT
91648699 TTATTATTCTTA
1 TTATTATTCTTA
*
91648711 TTCTTATTCTTA
1 TTATTATTCTTA
91648723 TTATTATT
1 TTATTATT
91648731 AGGTATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (12 bp):
TTATTATTCTTA
Found at i:91655573 original size:29 final size:29
Alignment explanation
Indices: 91655540--91655600 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
91655530 TTGAAGTCCC
91655540 TATATGGCAATTAGACCATTAAAGAAAAG
1 TATATGGCAATTAGACCATTAAAGAAAAG
*
91655569 TATATGGTAATTAGACCATTAAAGAAAAG
1 TATATGGCAATTAGACCATTAAAGAAAAG
91655598 TAT
1 TAT
91655601 GTAGATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (29 bp):
TATATGGCAATTAGACCATTAAAGAAAAG
Found at i:91656899 original size:51 final size:51
Alignment explanation
Indices: 91656831--91656928 Score: 171
Period size: 51 Copynumber: 1.9 Consensus size: 51
91656821 TGTTTGATTG
*
91656831 AGTGTATGTGTATAGGTAATATTGCCAAATTGATGA-AAATGCATGTTTTTA
1 AGTGTATGTGTATAGGTAAAATTGCCAAATTGATGAGAAA-GCATGTTTTTA
91656882 AGTGTATGTGTATAGGTAAAATTGCCAAATTGATGAGAAAGCATGTT
1 AGTGTATGTGTATAGGTAAAATTGCCAAATTGATGAGAAAGCATGTT
91656929 AATGTTAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 42 0.93
52 3 0.07
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (51 bp):
AGTGTATGTGTATAGGTAAAATTGCCAAATTGATGAGAAAGCATGTTTTTA
Found at i:91661084 original size:40 final size:40
Alignment explanation
Indices: 91661024--91661278 Score: 226
Period size: 40 Copynumber: 6.4 Consensus size: 40
91661014 GATGATAACA
*
91661024 GGGCTAAGTCCC-AAGAGCATTTGAGCTAGTGGCTAAT-TCC
1 GGGCTAAGTCCCGAAG-GCATTTGTGCTAGT-GCTAATATCC
* * * *
91661064 AGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCTAATATCC
* *
91661104 GGGCTAAGTCCCGAAGGCGTTTGTGC--GAGCTATTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCTA--ATATCC
* *
91661144 GGGCTAAGTCCCGAAGGCATTTGTGTTAGT--TATTATACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCTAATAT-CC
* *
91661183 GGGCTAAGTCCCGAAGGCATTTGTGCAAGT--TACCATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCTA--ATATCC
*
91661223 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GCTAATATCC
**
91661263 -GGCTAAACCCCGAAGG
1 GGGCTAAGTCCCGAAGG
91661279 TACTTGGTTT
Statistics
Matches: 178, Mismatches: 23, Indels: 29
0.77 0.10 0.13
Matches are distributed among these distances:
37 2 0.01
38 4 0.02
39 48 0.27
40 116 0.65
41 6 0.03
42 1 0.01
43 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCTAATATCC
Found at i:91661260 original size:119 final size:118
Alignment explanation
Indices: 91661065--91661278 Score: 295
Period size: 119 Copynumber: 1.8 Consensus size: 118
91661055 GCTAATTCCA
* * * * *
91661065 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGC
1 GGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGC
* **
91661130 GAGCTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTTATTATACCG
66 GAGCTACTATATCC-GGCTAAACCCCGAAGGCATTTGTGTTAGTTATTATACCG
* *
91661184 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGC
1 GGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGC
* *
91661249 TAG-TGGCTATATCCGGCTAAACCCCGAAGG
66 GAGCT-ACTATATCCGGCTAAACCCCGAAGG
91661279 TACTTGGTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
118 15 0.18
119 67 0.82
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (118 bp):
GGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGC
GAGCTACTATATCCGGCTAAACCCCGAAGGCATTTGTGTTAGTTATTATACCG
Found at i:91661267 original size:79 final size:79
Alignment explanation
Indices: 91661065--91661278 Score: 261
Period size: 79 Copynumber: 2.7 Consensus size: 79
91661055 GCTAATTCCA
* * *
91661065 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCTAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* ** *
91661130 GAGCTATTATATCCG
65 AAGCTACCATAACCG
* *
91661145 GGCTAAGTCCCGAAGGCATTTGTGTTAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCTAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
91661209 AAGTTACCATAACCG
65 AAGCTACCATAACCG
* * **
91661224 GGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAACCCCGAAGG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAGT-ACTATATCCGGGCTAAGTCCCGAAGG
91661279 TACTTGGTTT
Statistics
Matches: 115, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
78 1 0.01
79 81 0.70
80 33 0.29
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCA
AGCTACCATAACCG
Found at i:91672211 original size:43 final size:44
Alignment explanation
Indices: 91672067--91672217 Score: 164
Period size: 43 Copynumber: 3.5 Consensus size: 44
91672057 TATCCTAGAT
* * * ** *
91672067 ATGGTCTTACATGTTATCAC-ATATCGATATCACTGTCCCAGAC
1 ATGGTCTTACATGTAATCACAATAACAATGCCAATGTCCCAGAC
* * * * *
91672110 AGGGTCTTACACGAAATCA-AATAACGATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATCACAATAACAATGCCAATGTCCCAGAC
*
91672153 ATGGTCTTACATGTAACCACAAT-ACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACAATAACAATGCCAATGTCCCAGAC
*
91672196 ATGGTCTTACTTGTAATCACAA
1 ATGGTCTTACATGTAATCACAA
91672218 CTCGATAATC
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
43 86 0.97
44 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (44 bp):
ATGGTCTTACATGTAATCACAATAACAATGCCAATGTCCCAGAC
Found at i:91677957 original size:23 final size:23
Alignment explanation
Indices: 91677931--91677977 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
91677921 ACACAAAGTA
91677931 AGCTTTCAAAAGCTTAGTAGGCC
1 AGCTTTCAAAAGCTTAGTAGGCC
91677954 AGCTTTCAAAAGCTTAGTAGGCC
1 AGCTTTCAAAAGCTTAGTAGGCC
91677977 A
1 A
91677978 TATACAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (23 bp):
AGCTTTCAAAAGCTTAGTAGGCC
Found at i:91683032 original size:41 final size:40
Alignment explanation
Indices: 91682983--91683145 Score: 174
Period size: 41 Copynumber: 4.0 Consensus size: 40
91682973 AGCCTGATTC
91682983 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
91683022 TTAGATCACTGGCTCAAAGGCCCTTCG-GAACTAAG-TC-CA
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAG-ACCAAGCTCGGA
* * * *
91683061 GTTATGACACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 -TTA-GACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG--A
91683105 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
91683144 TT
1 TT
91683146 TAAACCCCGA
Statistics
Matches: 103, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
39 8 0.08
40 31 0.30
41 59 0.57
42 1 0.01
43 3 0.03
44 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:91685158 original size:79 final size:81
Alignment explanation
Indices: 91685049--91685231 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
91685039 TACTCGTTCA
* *
91685049 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
91685112 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
91685129 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
91685192 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
91685208 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
91685232 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:91685231 original size:40 final size:40
Alignment explanation
Indices: 91685028--91685231 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
91685018 CGGAATTTAA
** *
91685028 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91685068 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91685108 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
91685147 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
91685187 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
91685227 CCGGA
1 CCGGA
91685232 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:91693191 original size:79 final size:81
Alignment explanation
Indices: 91693082--91693264 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
91693072 TACTCGTTCA
* *
91693082 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
91693145 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
91693162 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
91693225 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
91693241 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
91693265 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:91693264 original size:40 final size:40
Alignment explanation
Indices: 91693061--91693264 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
91693051 CGGAATTTAA
** *
91693061 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91693101 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91693141 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
91693180 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
91693220 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
91693260 CCGGA
1 CCGGA
91693265 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:91694519 original size:14 final size:14
Alignment explanation
Indices: 91694497--91694531 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
91694487 ACATGAGAGC
91694497 TTTTT-TTTCTTTT
1 TTTTTCTTTCTTTT
91694510 TTTTTCTTTCTTTT
1 TTTTTCTTTCTTTT
*
91694524 TCTTTCTT
1 TTTTTCTT
91694532 CTATTCGGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTCTTTCTTTT
Found at i:91694529 original size:10 final size:10
Alignment explanation
Indices: 91694496--91694531 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
91694486 AACATGAGAG
91694496 CTTT-TTTTT
1 CTTTCTTTTT
*
91694505 CTTTTTTTTT
1 CTTTCTTTTT
91694515 CTTTCTTTTT
1 CTTTCTTTTT
91694525 CTTTCTT
1 CTTTCTT
91694532 CTATTCGGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 4 0.16
10 21 0.84
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
CTTTCTTTTT
Found at i:91694572 original size:62 final size:62
Alignment explanation
Indices: 91694448--91694578 Score: 149
Period size: 62 Copynumber: 2.1 Consensus size: 62
91694438 CTCAAAGCTC
* * ** * *
91694448 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTTCTTTT
1 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGATGATCTCTCTTTT
* * *
91694510 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCTAGGAAGAAGCATGA-ATGATGATCTCT-TTTT
1 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAA-CATGAGA-GATGATCTCTCTTTT
91694572 TTTTTCT
1 TTTTTCT
91694579 CTTTCACCAT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
62 48 0.83
63 10 0.17
ACGTcount: A:0.16, C:0.18, G:0.11, T:0.54
Consensus pattern (62 bp):
TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGATGATCTCTCTTTT
Found at i:91697327 original size:40 final size:40
Alignment explanation
Indices: 91697239--91697496 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
91697229 TGGATGATAA
** * *
91697239 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
91697279 CCGCGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
91697319 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
91697359 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
91697399 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
91697439 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
91697479 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
91697497 TACTTGGCTT
Statistics
Matches: 197, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.08
40 181 0.92
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:91705765 original size:41 final size:41
Alignment explanation
Indices: 91705627--91705767 Score: 153
Period size: 40 Copynumber: 3.5 Consensus size: 41
91705617 CCCGATTCTT
* * * *
91705627 AGCACTGGCTCAAAAGGCC-TCGAGACCAAGCTCGATTA-G
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGATTATG
* * * * *
91705666 ATCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGATTATG
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGATTATG
* * *
91705707 A-CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTATT
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGATTATG
91705747 AGCACTGGCTCAAAAGCCCTT
1 AGCACTGGCTCAAAAGCCCTT
91705768 TGAGACCAAG
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
39 15 0.18
40 48 0.58
41 20 0.24
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGATTATG
Found at i:91721958 original size:40 final size:40
Alignment explanation
Indices: 91721906--91722133 Score: 291
Period size: 40 Copynumber: 5.7 Consensus size: 40
91721896 GCCACTAGCT
* *
91721906 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91721946 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
91721985 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
91722025 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * ** * *
91722065 CGAATGCCTTCGGGACTTAGCCCGG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
91722105 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
91722134 CATCCGAACA
Statistics
Matches: 170, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 39 0.23
40 130 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:91722109 original size:80 final size:77
Alignment explanation
Indices: 91721906--91722130 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 77
91721896 GCCACTAGCT
* *
91721906 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTA-ACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-AAT--TAGACTAGCACAAATGCCTTCGGGACTTAGCCCG
91721970 GTATAATAACTCGCA
63 GTATAATAACTCGCA
*
91721985 CAAATGCCTTCGGGACTTAGCCCGGATATAATAG-CTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGA-AT--TAGACTAGCACAAATGCCTTCGGGACTTAGCCCG
* *
91722049 GATATAGTAGCTCGCA
63 G-TATAATAACTCGCA
* *
91722065 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAG--ACTAGCACAAATGCCT-TCGGGACTTAGCCCG
91722129 GT
63 GT
91722131 TATCATCCGA
Statistics
Matches: 130, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
77 3 0.02
79 64 0.49
80 63 0.48
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA
TAATAACTCGCA
Found at i:91730048 original size:39 final size:40
Alignment explanation
Indices: 91729994--91730289 Score: 324
Period size: 40 Copynumber: 7.5 Consensus size: 40
91729984 AAACCAAGTA
** ** * *
91729994 CCTTCGGGGTTTAG-CCGGATATAGCCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGATACTCGCACAAATG
* * *
91730033 CCTTCGGGACTTAGCCCGGTTAT-GGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGAT-ACTCGCACAAATG
91730073 CCTTCGGGACTTAGCCCGG-TATA-ATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGAT-ACTCGCACAAATG
91730112 CCTTCGGGACTTAGCCC-GATATA-ATAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGATA-CTCGCACAAATG
*
91730151 CCTTCGGGACTTAGCCCGGATATA-ATAGCTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGATA-CTCGCACAAATG
*
91730191 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGATA-CTCGCACAAATG
** * *
91730231 CCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGATACTCGCACAAATG
91730271 -CTCTCGGGACTTAGCCCGG
1 CCT-TCGGGACTTAGCCCGG
91730290 TTATCATCCG
Statistics
Matches: 231, Mismatches: 16, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 85 0.37
40 143 0.62
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGATACTCGCACAAATG
Found at i:91730079 original size:40 final size:40
Alignment explanation
Indices: 91730027--91730289 Score: 345
Period size: 40 Copynumber: 6.6 Consensus size: 40
91730017 GCCACTAGCT
* ** *
91730027 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
91730067 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
91730106 CAAATGCCTTCGGGACTTAGCCC-GATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
91730145 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
91730185 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* *** * *
91730225 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAATAACTCGCA
91730265 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
91730290 TTATCATCCG
Statistics
Matches: 205, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.00
39 73 0.36
40 131 0.64
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:91734144 original size:11 final size:11
Alignment explanation
Indices: 91734128--91734153 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
91734118 CTCTTGATGT
91734128 CATTACAGGTA
1 CATTACAGGTA
91734139 CATTACAGGTA
1 CATTACAGGTA
91734150 CATT
1 CATT
91734154 GTTTCTCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (11 bp):
CATTACAGGTA
Found at i:91740836 original size:39 final size:39
Alignment explanation
Indices: 91740793--91740941 Score: 264
Period size: 39 Copynumber: 3.8 Consensus size: 39
91740783 TATGGTAGCC
*
91740793 CGCACAA-TGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
91740832 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
91740871 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
91740910 TGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
91740942 TACCGAACAT
Statistics
Matches: 107, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
39 97 0.91
40 10 0.09
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:91745123 original size:20 final size:20
Alignment explanation
Indices: 91745089--91745135 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
91745079 ATATTGTTAC
91745089 TATTATTTTTATTAATA-TAT
1 TATTATTTTTATTAA-AGTAT
91745109 TAATTATTTTT-TTAAAGTAT
1 T-ATTATTTTTATTAAAGTAT
91745129 TATTATT
1 TATTATT
91745136 ACTAATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.28
20 9 0.36
21 9 0.36
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TATTATTTTTATTAAAGTAT
Found at i:91745132 original size:23 final size:21
Alignment explanation
Indices: 91745090--91745135 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
91745080 TATTGTTACT
91745090 ATTATTTTTATTAATATATTA
1 ATTATTTTTATTAATATATTA
91745111 ATTATTTTT-TTAA-AGTATT-
1 ATTATTTTTATTAATA-TATTA
91745130 ATTATT
1 ATTATT
91745136 ACTAATGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.29
20 8 0.33
21 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTATTTTTATTAATATATTA
Found at i:91745198 original size:13 final size:14
Alignment explanation
Indices: 91745174--91745204 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
91745164 ATTATTATCA
91745174 ATATTAATATATGT
1 ATATTAATATATGT
91745188 ATATT-ATATATGT
1 ATATTAATATATGT
91745201 ATAT
1 ATAT
91745205 ATTCATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:91745421 original size:24 final size:23
Alignment explanation
Indices: 91745376--91745437 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
91745366 TATTACATGT
*
91745376 ATTTTTTTATGTTATGTATATA-
1 ATTTTTTTATATTATGTATATAC
* *
91745398 AGTTTTTTTATATTATATTTTATAC
1 A-TTTTTTTATATTAT-GTATATAC
*
91745423 ATTTTTTAATATTAT
1 ATTTTTTTATATTAT
91745438 TAGTTATATT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 1 0.03
23 13 0.39
24 18 0.55
25 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65
Consensus pattern (23 bp):
ATTTTTTTATATTATGTATATAC
Found at i:91745444 original size:24 final size:24
Alignment explanation
Indices: 91745400--91745445 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
91745390 TGTATATAAG
* *
91745400 TTTTTTTATATTATATTTTATACA
1 TTTTTTAATATTATATGTTATACA
91745424 TTTTTTAATATTAT-TAGTTATA
1 TTTTTTAATATTATAT-GTTATA
91745446 TTTTTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
TTTTTTAATATTATATGTTATACA
Found at i:91757882 original size:74 final size:71
Alignment explanation
Indices: 91757781--91758128 Score: 339
Period size: 74 Copynumber: 4.8 Consensus size: 71
91757771 GGATACTCTA
* * * *
91757781 AGGTATCTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGT
1 AGGTATTTTTAATTTATG-TTTCAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-
91757846 CACACGCTG
64 -ACACGCTG
* * * **
91757855 AGGTATTTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGG
1 AGGTATTTTTAATTTATGTTTC--AAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG
*
91757920 TCACGCTG
64 ACACGCTG
*
91757928 AGGTATTTTTAATTCCCGT-TGTTTCAAAAATTAGCTCATATTGCGAGAAGTGAGTTGAGCCTCA
1 AGGTATTTTTAATT----TATGTTTCAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCA
* *
91757992 --AGACGTTG
62 GGACACGCTG
* * * * * * *
91758000 AGGTAATTTCAATTTATG-TTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGC
1 AGGTATTTTTAATTTATGTTTCAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGAC
91758064 ACGCTG
66 ACGCTG
* * * *
91758070 AGGTATTTTTAGTTTATGTTT-AGAAAATTGACTCATCTTGCGA-AAGGTGAGTTAAGCCT
1 AGGTATTTTTAATTTATGTTTCA-AAAATTAACTCATATTGCGAGAA-GTGAGTTGAGCCT
91758129 TTTAATTTCT
Statistics
Matches: 224, Mismatches: 38, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
68 38 0.17
69 2 0.01
70 21 0.09
71 31 0.14
72 17 0.08
73 24 0.11
74 49 0.22
75 35 0.16
76 6 0.03
77 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (71 bp):
AGGTATTTTTAATTTATGTTTCAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGAC
ACGCTG
Found at i:91758068 original size:142 final size:145
Alignment explanation
Indices: 91757800--91758080 Score: 370
Period size: 142 Copynumber: 1.9 Consensus size: 145
91757790 TAATTCATGT
* *
91757800 TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTT
1 TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-G--ACACGCTGAGGTAATTTC
* ** *
91757865 AGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAG
63 AATTTATGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGGCACGCTGAG
91757930 GTATTTTTAATTCCCGTTG
127 GTATTTTTAATTCCCGTTG
* * * * *
91757949 TTTCAAAAATTAGCTCATATTGCGAGAAGTGAGTTGAGCCTCA-AGACGTTGAGGTAATTTCAAT
1 TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAAT
* ** *
91758013 TTATG-TTC-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTAT
66 TTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGGCACGCTGAGGTAT
91758076 TTTTA
131 TTTTA
91758081 GTTTATGTTT
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
142 53 0.45
144 3 0.03
145 21 0.18
149 40 0.34
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (145 bp):
TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAAT
TTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGGCACGCTGAGGTAT
TTTTAATTCCCGTTG
Found at i:91758368 original size:56 final size:55
Alignment explanation
Indices: 91758230--91758420 Score: 267
Period size: 56 Copynumber: 3.5 Consensus size: 55
91758220 TAATTCCTAC
* * * * ** *
91758230 TTTTCAAAAAATCAACTCGTATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTGT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATAT
*
91758285 TTTTC-AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTCAATTTATAT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATAT
* *
91758339 GTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAACTTATAT
1 TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATAT
91758395 TTTTCAAAAAAATCAACTCATATTGC
1 TTTTC-AAAAAATCAACTCATATTGC
91758421 TTTCAAAAAA
Statistics
Matches: 122, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
54 45 0.37
55 5 0.04
56 72 0.59
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (55 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATAT
Found at i:91758436 original size:26 final size:25
Alignment explanation
Indices: 91758384--91758446 Score: 94
Period size: 26 Copynumber: 2.6 Consensus size: 25
91758374 GTTGAGCCTT
*
91758384 TCAACTTATATT--TTTCAAAAAAA
1 TCAACTCATATTGCTTTCAAAAAAA
91758407 TCAACTCATATTGCTTTCAAAAAAAA
1 TCAACTCATATTGCTTTC-AAAAAAA
91758433 TCAACTCATATTGC
1 TCAACTCATATTGC
91758447 GAGAGGTGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
23 11 0.31
25 4 0.11
26 21 0.58
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.35
Consensus pattern (25 bp):
TCAACTCATATTGCTTTCAAAAAAA
Found at i:91758480 original size:82 final size:79
Alignment explanation
Indices: 91758340--91758500 Score: 250
Period size: 82 Copynumber: 2.0 Consensus size: 79
91758330 AATTTATATG
91758340 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAACTTATATTTTTCAAAAA
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAACTTATATTTTTC--AAA
*
91758405 AATCAACTCATATTGC
64 AAGCAACTCATATTGC
* * * *
91758421 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAA
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAACTTATATTTTTCAAAA
91758486 AGCAACTCATATTGC
65 AGCAACTCATATTGC
91758501 GAGAGTTGAG
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
80 18 0.24
81 4 0.05
82 52 0.70
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (79 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAACTTATATTTTTCAAAAA
GCAACTCATATTGC
Found at i:91758511 original size:54 final size:50
Alignment explanation
Indices: 91758428--91758567 Score: 176
Period size: 49 Copynumber: 2.7 Consensus size: 50
91758418 TGCTTTCAAA
91758428 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTT--TTTCT-TTTTTC
* * * *
91758482 AAAAAGCAACTCATATTGCGAGAGTTGAGTT-ATACC-TTTTTGTTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCTTTTTTCTTTTTTC
*
91758531 AAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
91758568 CAAGCCACAC
Statistics
Matches: 75, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
49 36 0.48
50 5 0.07
52 2 0.03
53 1 0.01
54 31 0.41
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (50 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTTCTTTTTTC
Found at i:91760108 original size:11 final size:10
Alignment explanation
Indices: 91760080--91760107 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
91760070 GATACAAATG
91760080 AAATTTTTAA
1 AAATTTTTAA
91760090 AAATTTTTAA
1 AAATTTTTAA
91760100 AAATTTTT
1 AAATTTTT
91760108 TGTCTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
AAATTTTTAA
Found at i:91760576 original size:24 final size:21
Alignment explanation
Indices: 91760533--91760579 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
91760523 TATTGTTACT
91760533 ATTATTTTTATTAATATATTA
1 ATTATTTTTATTAATATATTA
*
91760554 ATTATTTTTTTTAA-AGTATT-
1 ATTATTTTTATTAATA-TATTA
91760574 ATTATT
1 ATTATT
91760580 ACTAATGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
ATTATTTTTATTAATATATTA
Found at i:91760642 original size:13 final size:14
Alignment explanation
Indices: 91760618--91760648 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
91760608 ATTATTATCA
91760618 ATATTAATATATGT
1 ATATTAATATATGT
91760632 ATATT-ATATATGT
1 ATATTAATATATGT
91760645 ATAT
1 ATAT
91760649 ATTCATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:91760935 original size:21 final size:20
Alignment explanation
Indices: 91760902--91760944 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
91760892 TTTTATATAC
91760902 TATTACATGTATACTTCTAA
1 TATTACATGTATACTTCTAA
* *
91760922 TATTATATCGTATATTTCTAA
1 TATTACAT-GTATACTTCTAA
91760943 TA
1 TA
91760945 CCATCATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.49
Consensus pattern (20 bp):
TATTACATGTATACTTCTAA
Found at i:91762026 original size:14 final size:14
Alignment explanation
Indices: 91762004--91762047 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
91761994 TGGTGCAAAC
*
91762004 CCTACATGTGCGAA
1 CCTATATGTGCGAA
*
91762018 CCTATATGTGCAAA
1 CCTATATGTGCGAA
91762032 CCTATATGTGCGAA
1 CCTATATGTGCGAA
91762046 CC
1 CC
91762048 CTGTATTAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (14 bp):
CCTATATGTGCGAA
Found at i:91769930 original size:35 final size:35
Alignment explanation
Indices: 91769891--91769960 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
91769881 TAATCAACTC
91769891 CTTAATGTCTTGAATATATGGACCGATTAACGATT
1 CTTAATGTCTTGAATATATGGACCGATTAACGATT
91769926 CTTAATGTCTTGAATATATGGACCGATTAACGATT
1 CTTAATGTCTTGAATATATGGACCGATTAACGATT
91769961 TATCTCGACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (35 bp):
CTTAATGTCTTGAATATATGGACCGATTAACGATT
Found at i:91777091 original size:14 final size:15
Alignment explanation
Indices: 91777069--91777119 Score: 81
Period size: 14 Copynumber: 3.6 Consensus size: 15
91777059 ATGTGTTAAA
91777069 ATATA-TATTATATT
1 ATATATTATTATATT
91777083 ATAT-TTATTATATT
1 ATATATTATTATATT
91777097 ATATATTA-TATATT
1 ATATATTATTATATT
91777111 ATATATTAT
1 ATATATTAT
91777120 ATAAATAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
14 31 0.91
15 3 0.09
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATATATTATTATATT
Found at i:91777101 original size:21 final size:21
Alignment explanation
Indices: 91777069--91777122 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
91777059 ATGTGTTAAA
91777069 ATATA-TATTATATTATAT-TT
1 ATATATTA-TATATTATATATT
91777089 ATTATATTATATATTATATATT
1 A-TATATTATATATTATATATT
91777111 ATATATTATATA
1 ATATATTATATA
91777123 AATAAGTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.03
21 25 0.81
22 5 0.16
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATATTATATATTATATATT
Found at i:91777103 original size:7 final size:7
Alignment explanation
Indices: 91777077--91777122 Score: 76
Period size: 7 Copynumber: 6.6 Consensus size: 7
91777067 AAATATATAT
91777077 TATATTA
1 TATATTA
91777084 TAT-TTA
1 TATATTA
91777090 TTATATTA
1 -TATATTA
91777098 TATATTA
1 TATATTA
91777105 TATATTA
1 TATATTA
91777112 TATATTA
1 TATATTA
91777119 TATA
1 TATA
91777123 AATAAGTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 3 0.08
7 31 0.84
8 3 0.08
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:91777121 original size:5 final size:5
Alignment explanation
Indices: 91777072--91777114 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
91777062 TGTTAAAATA
91777072 TATAT TATAT TATAT T-TAT TATAT TATA- TAT-T ATATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT -TATAT TATAT
91777115 ATTATATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 7 0.21
5 26 0.76
6 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:91778435 original size:19 final size:15
Alignment explanation
Indices: 91778389--91778430 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
91778379 CGATGAATTT
91778389 ATTGAATTTATATTG
1 ATTGAATTTATATTG
91778404 ATTGAATTTATATTG
1 ATTGAATTTATATTG
91778419 ATTGAA-TTATAT
1 ATTGAATTTATAT
91778431 AATATATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 6 0.22
15 21 0.78
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:91778840 original size:23 final size:23
Alignment explanation
Indices: 91778810--91778896 Score: 101
Period size: 21 Copynumber: 4.0 Consensus size: 23
91778800 GCTTTATCGA
*
91778810 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTCATGTGTCGTATT
*
91778833 TCAGGCACTTCGTGTGTCGTA--
1 TCAGGCACTTCATGTGTCGTATT
* *
91778854 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTCATGTGTCGTATT
*
91778876 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTCATGTGTCGTAT
91778897 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 34 0.62
22 2 0.04
23 19 0.35
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.39
Consensus pattern (23 bp):
TCAGGCACTTCATGTGTCGTATT
Found at i:91779383 original size:18 final size:18
Alignment explanation
Indices: 91779346--91779440 Score: 91
Period size: 18 Copynumber: 5.3 Consensus size: 18
91779336 TAAGGTATAA
* *
91779346 AATAACTGATTATTACTG
1 AATAACTGACTGTTACTG
* *
91779364 AATAATTGACTGTTATTG
1 AATAACTGACTGTTACTG
** *
91779382 AATAACTGGTTATTACTG
1 AATAACTGACTGTTACTG
** * *
91779400 AATATTTGATTGTTACCG
1 AATAACTGACTGTTACTG
91779418 AATAACTGACTGTTACTG
1 AATAACTGACTGTTACTG
91779436 AATAA
1 AATAA
91779441 ATAATTGTTC
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.39
Consensus pattern (18 bp):
AATAACTGACTGTTACTG
Found at i:91779448 original size:36 final size:36
Alignment explanation
Indices: 91779346--91779449 Score: 127
Period size: 36 Copynumber: 2.9 Consensus size: 36
91779336 TAAGGTATAA
* **
91779346 AATAACTGATTATTACTGAATAATTGACTGTTATTG
1 AATAACTGATTATTACTGAATAATTGATTGTTACCG
* *
91779382 AATAACTGGTTATTACTGAATATTTGATTGTTACCG
1 AATAACTGATTATTACTGAATAATTGATTGTTACCG
* * * *
91779418 AATAACTGACTGTTACTGAATAAATAATTGTT
1 AATAACTGATTATTACTGAATAATTGATTGTT
91779450 CTGAGAGTTA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (36 bp):
AATAACTGATTATTACTGAATAATTGATTGTTACCG
Found at i:91779449 original size:18 final size:18
Alignment explanation
Indices: 91779346--91779453 Score: 83
Period size: 18 Copynumber: 6.1 Consensus size: 18
91779336 TAAGGTATAA
* *
91779346 AATAACTGATTATTACTG
1 AATAAATGATTGTTACTG
* * *
91779364 AATAATTGACTGTTATTG
1 AATAAATGATTGTTACTG
* * *
91779382 AATAACTGGTTATTACTG
1 AATAAATGATTGTTACTG
** *
91779400 AATATTTGATTGTTACCG
1 AATAAATGATTGTTACTG
* *
91779418 AATAACTGACTGTTACTG
1 AATAAATGATTGTTACTG
*
91779436 AATAAATAATTGTT-CTG
1 AATAAATGATTGTTACTG
91779453 A
1 A
91779454 GAGTTAATGA
Statistics
Matches: 69, Mismatches: 21, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
17 4 0.06
18 65 0.94
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (18 bp):
AATAAATGATTGTTACTG
Found at i:91782407 original size:18 final size:18
Alignment explanation
Indices: 91782384--91782440 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
91782374 TACGACCGTT
91782384 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
91782402 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
91782420 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
91782438 TAC
1 TAC
91782441 AGTAGTTGGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:91792207 original size:34 final size:35
Alignment explanation
Indices: 91792164--91792236 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
91792154 AAAACATATC
* * *
91792164 AGTCGTACAACCACCGTCAAGTCAGTTAAA-TCAT
1 AGTCATACAACCACAGTCAAATCAGTTAAATTCAT
* *
91792198 AGTCATACAATCATAGTCAAATCAGTTAAATTCAT
1 AGTCATACAACCACAGTCAAATCAGTTAAATTCAT
91792233 AGTC
1 AGTC
91792237 CAAGTTAGTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 25 0.76
35 8 0.24
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.27
Consensus pattern (35 bp):
AGTCATACAACCACAGTCAAATCAGTTAAATTCAT
Found at i:91792310 original size:27 final size:27
Alignment explanation
Indices: 91792297--91792386 Score: 92
Period size: 27 Copynumber: 3.4 Consensus size: 27
91792287 GGTATTTCGA
91792297 TAATTTTACACTACAAAGGTATTCCAG
1 TAATTTTACACTACAAAGGTATTCCAG
* * *
91792324 TAATTTTGCACTACAAAGGTATTACGG
1 TAATTTTACACTACAAAGGTATTCCAG
* * * * * *
91792351 TCATTCTACAAT-CGAGGGTATTTCAG
1 TAATTTTACACTACAAAGGTATTCCAG
91792377 TAATTTTACA
1 TAATTTTACA
91792387 AACCGAGGTC
Statistics
Matches: 50, Mismatches: 13, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 18 0.36
27 32 0.64
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (27 bp):
TAATTTTACACTACAAAGGTATTCCAG
Found at i:91794226 original size:10 final size:10
Alignment explanation
Indices: 91794211--91794236 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
91794201 GAGCATCAAT
91794211 TAAACACAAC
1 TAAACACAAC
91794221 TAAACACAAC
1 TAAACACAAC
91794231 TAAACA
1 TAAACA
91794237 TCATATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.27, G:0.00, T:0.12
Consensus pattern (10 bp):
TAAACACAAC
Found at i:91794388 original size:2 final size:2
Alignment explanation
Indices: 91794381--91794409 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
91794371 TCCAACTCAA
91794381 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
91794410 AAAAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:91798974 original size:2 final size:2
Alignment explanation
Indices: 91798967--91798999 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
91798957 ACTTATAAAG
91798967 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91799000 AACTTGAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91804559 original size:21 final size:21
Alignment explanation
Indices: 91804535--91804585 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
91804525 TAATATGTTA
* **
91804535 TATGCTTAGTATGATTTGTAT
1 TATGCTAAGTATGATCCGTAT
*
91804556 TATGATAAGTATGATCCGTAT
1 TATGCTAAGTATGATCCGTAT
91804577 TATGCTAAG
1 TATGCTAAG
91804586 CATGGTTTGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (21 bp):
TATGCTAAGTATGATCCGTAT
Found at i:91806579 original size:32 final size:32
Alignment explanation
Indices: 91806543--91806643 Score: 100
Period size: 33 Copynumber: 3.1 Consensus size: 32
91806533 TTATCTCTCT
91806543 CAAAATGGTCCTCAAAACTAGGGCACTAAAAA
1 CAAAATGGTCCTCAAAACTAGGGCACTAAAAA
*
91806575 CAAAATTGGAT-CTCATAACTAGGGCACT-AAAA
1 CAAAA-TGG-TCCTCAAAACTAGGGCACTAAAAA
* * * *
91806607 CGTAAATAGACCTCAAAACTAGGTC-CTACAAAA
1 C-AAAATGGTCCTCAAAACTAGGGCACTA-AAAA
91806640 CAAA
1 CAAA
91806644 CTAGATCTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
31 2 0.04
32 26 0.46
33 27 0.48
34 1 0.02
ACGTcount: A:0.47, C:0.22, G:0.14, T:0.18
Consensus pattern (32 bp):
CAAAATGGTCCTCAAAACTAGGGCACTAAAAA
Found at i:91806672 original size:64 final size:65
Alignment explanation
Indices: 91806552--91806693 Score: 180
Period size: 64 Copynumber: 2.2 Consensus size: 65
91806542 TCAAAATGGT
* * * *
91806552 CCTCAAAACTAGGGCACTAAAAACAAAATTGGATCTCATAACTAGGGCACTAAAACGTAAATAGA
1 CCTCAAAACTAGGGCACTAAAAACAAAACTAGATCTCACAACTAGGCCACTAAAACGTAAATAGA
* * * * *
91806617 CCTCAAAACTAGGTC-CTACAAAAC-AAACTAGATCTTACAACTAGTCCACTAAAACGTAATTGG
1 CCTCAAAACTAGGGCACTA-AAAACAAAACTAGATCTCACAACTAGGCCACTAAAACGTAAATAG
91806680 A
65 A
91806681 CCTCAAAACTAGG
1 CCTCAAAACTAGG
91806694 ATATTGAACT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
64 48 0.72
65 19 0.28
ACGTcount: A:0.44, C:0.23, G:0.13, T:0.20
Consensus pattern (65 bp):
CCTCAAAACTAGGGCACTAAAAACAAAACTAGATCTCACAACTAGGCCACTAAAACGTAAATAGA
Found at i:91806691 original size:32 final size:32
Alignment explanation
Indices: 91806552--91806693 Score: 110
Period size: 32 Copynumber: 4.4 Consensus size: 32
91806542 TCAAAATGGT
* * *
91806552 CCTCAAAACTAGGGCACTAAAAACAAAATTGGA
1 CCTCAAAACTAGGCCACT-AAAACGAAATTAGA
* * *
91806585 TCTCATAACTAGGGCACTAAAACGTAAA-TAGA
1 CCTCAAAACTAGGCCACTAAAACG-AAATTAGA
*
91806617 CCTCAAAACTAGGTCCTAC-AAAAC-AAACTAGA
1 CCTCAAAACTAGG-CC-ACTAAAACGAAATTAGA
* * * * * *
91806649 TCTTACAACTAGTCCACTAAAACGTAATTGGA
1 CCTCAAAACTAGGCCACTAAAACGAAATTAGA
91806681 CCTCAAAACTAGG
1 CCTCAAAACTAGG
91806694 ATATTGAACT
Statistics
Matches: 85, Mismatches: 18, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
30 2 0.02
31 10 0.12
32 46 0.54
33 25 0.29
34 2 0.02
ACGTcount: A:0.44, C:0.23, G:0.13, T:0.20
Consensus pattern (32 bp):
CCTCAAAACTAGGCCACTAAAACGAAATTAGA
Found at i:91810474 original size:16 final size:16
Alignment explanation
Indices: 91810453--91810485 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
91810443 AAACCTTATG
91810453 TTTACTCTAAGCCTAA
1 TTTACTCTAAGCCTAA
91810469 TTTACTCTAAGCCTAA
1 TTTACTCTAAGCCTAA
91810485 T
1 T
91810486 AAAAGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.39
Consensus pattern (16 bp):
TTTACTCTAAGCCTAA
Found at i:91817323 original size:15 final size:16
Alignment explanation
Indices: 91817281--91817323 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
91817271 ATACAAACAG
* *
91817281 AACAACAAAAAATTTT
1 AACAATAAAACATTTT
*
91817297 AACAATACAACATTTT
1 AACAATAAAACATTTT
91817313 AA-AATAAAACA
1 AACAATAAAACA
91817324 CATTCGATCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.63, C:0.14, G:0.00, T:0.23
Consensus pattern (16 bp):
AACAATAAAACATTTT
Found at i:91822298 original size:3 final size:3
Alignment explanation
Indices: 91822290--91822325 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
91822280 ATTTATTTAC
91822290 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
91822326 CCATTAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:91822465 original size:3 final size:3
Alignment explanation
Indices: 91822457--91822577 Score: 95
Period size: 3 Copynumber: 40.7 Consensus size: 3
91822447 AGTATTTTCC
* * * * *
91822457 ATT ATT ATT ATT AAT ATC ACT ACT ATC ATT ATT ATT ATT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * * *
91822504 ACG A-T ACCTT TTT ATT ATT ATT ACT ATT -GT ATT ATT ATT ATT ATT
1 ATT ATT A--TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
91822549 ATT ATT ATC ATC ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
91822578 ATTTCCCTTT
Statistics
Matches: 94, Mismatches: 19, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
2 4 0.04
3 89 0.95
5 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:91822673 original size:20 final size:21
Alignment explanation
Indices: 91822648--91822710 Score: 56
Period size: 26 Copynumber: 2.8 Consensus size: 21
91822638 TATTTTAGCA
91822648 CATTTATTTTATTTATTT-AT
1 CATTTATTTTATTTATTTCAT
91822668 CATTTACTCTCATTATTATTATTTCAT
1 CATTTA-T-T--TTA-T-TTATTTCAT
*
91822695 CATCTATTTTATTTAT
1 CATTTATTTTATTTAT
91822711 AGTTTTTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
20 6 0.17
21 5 0.14
22 2 0.06
23 3 0.09
24 3 0.09
25 2 0.06
26 7 0.20
27 7 0.20
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (21 bp):
CATTTATTTTATTTATTTCAT
Found at i:91824777 original size:20 final size:20
Alignment explanation
Indices: 91824735--91824781 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
91824725 ATTCCTTTCT
91824735 TTTGCA-TTCATTCCATGCA
1 TTTGCATTTCATTCCATGCA
*
91824754 TTTGCATTTGCATTGCAT-CA
1 TTTGCATTT-CATTCCATGCA
91824774 TTTGCATT
1 TTTGCATT
91824782 AGACTTTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 6 0.24
20 12 0.48
21 7 0.28
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.47
Consensus pattern (20 bp):
TTTGCATTTCATTCCATGCA
Found at i:91826641 original size:15 final size:16
Alignment explanation
Indices: 91826621--91826656 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
91826611 CTTTAAGACC
91826621 AAAAAAGAAAAA-AAG
1 AAAAAAGAAAAAGAAG
91826636 AAAAAAGAAAAAGAAG
1 AAAAAAGAAAAAGAAG
91826652 AAAAA
1 AAAAA
91826657 GGAGAGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAGAAG
Found at i:91826657 original size:9 final size:8
Alignment explanation
Indices: 91826621--91826656 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
91826611 CTTTAAGACC
91826621 AAAAAAGA
1 AAAAAAGA
91826629 AAAAAAG-
1 AAAAAAGA
91826636 AAAAAAGA
1 AAAAAAGA
91826644 AAAAGAAGA
1 AAAA-AAGA
91826653 AAAA
1 AAAA
91826657 GGAGAGGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 7 0.27
8 11 0.42
9 8 0.31
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:91827874 original size:66 final size:66
Alignment explanation
Indices: 91827774--91827900 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
91827764 CATTCATATA
*
91827774 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
91827839 C
66 C
* *
91827840 ATAACACATCTGGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
91827901 TAAGCATAGA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:91828127 original size:86 final size:85
Alignment explanation
Indices: 91827963--91829293 Score: 841
Period size: 86 Copynumber: 15.3 Consensus size: 85
91827953 AATTCACAAG
**
91827963 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATT-TACAGATCTTAACCCCCTAAGCAGT
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTG-A-ATTGT--AGATCTTAACCCCCTAAGCAGT
* * *
91828027 AAGGAAACAAATCGAAGACGAAGGG
62 -AGGGAACAGATCGAAGACGAAGGA
* * * ** * *
91828052 TCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTGTAGAACTTATCCCCCTAAGCAGTAGGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAATTGTAGATCTTAACCCCCTAAGCAGTAGGG
* * *
91828117 AAACAGATCGAAGATGATGGG
66 -AACAGATCGAAGACGAAGGA
* * * * * *
91828138 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTGAATT-TACAAGCCTTAAACCCCTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGA-TTGAATTGTA-GA-TCTTAACCCCCTAAGCAGTA
* * **
91828201 GGGTAACAG-GCTGAAAATTTACA-GA
63 GGG-AACAGATC-GAAGA-CGA-AGGA
* * * * ** * * * * *
91828226 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAA-TTGTA-GATCTTAACCCCCTAAGCAGTAG
* * *
91828291 GGTAACAGA-CCAA-ATTGCA-GA
64 GG-AACAGATCGAAGA-CGAAGGA
* ** * * * *
91828312 TCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATGAGCTTTAACCCCCTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAA-TTGTA-GATC-TTAACCCCCTAAGCAGTA
* *
91828376 GGGTAACA-AGCTGAATTTAC-AA-G-
63 GGG-AACAGATC-GAA--GACGAAGGA
**
91828399 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATT-TACAGATCTTAACCCCCTAAGCAGT
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTG-A-ATTGT--AGATCTTAACCCCCTAAGCAGT
* *
91828463 AGGGAAACAGATCGGAGACGAAGGG
62 AGGG-AACAGATCGAAGACGAAGGA
* * * ** *
91828488 TCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTGTAGATCTTATCCCCCTAAGCAGTAAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAATTGTAGATCTTAACCCCCTAAGCAGT-AGG
* * *
91828553 AAACAGATCGAAGATGATGG-
65 GAACAGATCGAAGACGAAGGA
* * * * * *
91828573 GCTTTAACCCTCTAAGCAGTAGGGTAACA-AGCTGAATT-TACAAGCCTTAAACCCCTAAGCAGT
1 CCTTAAACCC-CTAAGCAGTAGGGTAACAGA-TTGAATTGTA-GA-TCTTAACCCCCTAAGCAGT
* **
91828636 AGGGTAACAG-GCTGAAGATTTACA-GA
62 AGGG-AACAGATC-GAAGA-CGA-AGGA
* * * ** * ** *
91828662 TCTT-AACCCCATAAGTAGTAGGGAAACAGATCAAAGATG-ATGGGCTTTAACTCCCTAAGCAGT
1 CCTTAAACCCC-TAAGCAGTAGGGTAACAGATTGAA-TTGTA-GATC-TTAACCCCCTAAGCAGT
* *
91828725 AGGGTAACA-AGCCGAATTTAC-AA--A
62 AGGG-AACAGA-TCGAA--GACGAAGGA
* * * *
91828749 CCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTT-AAACCCCTAAGCAGTAGGGTAACAGATTGAATTGTAGATCTTAACCCCCTAAGCAGTAG-
* *
91828814 GGAGCAGATCGAAGACGAAGAA
64 GGAACAGATCGAAGACGAAGGA
* * * *
91828836 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAATTGTAGATCTTAACCCCCTAAGCAGTAG-G
* * *
91828901 GAGCAAATCGAAGACGAAGAA
65 GAACAGATCGAAGACGAAGGA
* * * * * *
91828922 CCTTAAACCCCTACGCAGTAGGGTAACAGGTTGAATTGCAGATATTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAATTGTAGATCTTAACCCCCTAAGCAGTAG-G
* *
91828987 GAGCAGATCGAAGACGAAGAA
65 GAACAGATCGAAGACGAAGGA
* * * *
91829008 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAATTGTAGATCTTAACCCCCTAAGCAGTAG-G
* *
91829073 GAGCAGATCGAAGACGAAGAA
65 GAACAGATCGAAGACGAAGGA
* * * *
91829094 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAATTGTAGATCTTAACCCCCTAAGCAGTAG-G
* *
91829159 G-GCAGATCGAAGACGAAGAA
65 GAACAGATCGAAGACGAAGGA
* * * **
91829179 CCTTAAACCCCTAAGCAATAGGGTAACAGGTTGAGTT-TACAGATC-TAAAACCCTAAGCAGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAATTGT--AGATCTTAACCCCCTAAGCAGTAG
* *
91829242 GGAAACAGATC-AAGGATGACAAG-
64 GG-AACAGATCGAA-GACGA-AGGA
*
91829265 CCTTAATCCCCTAAGCAGTAGGGTAACAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAG
91829294 GCTGAAAATT
Statistics
Matches: 1043, Mismatches: 138, Indels: 125
0.80 0.11 0.10
Matches are distributed among these distances:
84 4 0.00
85 94 0.09
86 579 0.56
87 115 0.11
88 116 0.11
89 130 0.12
90 4 0.00
91 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (85 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGATTGAATTGTAGATCTTAACCCCCTAAGCAGTAGGG
AACAGATCGAAGACGAAGGA
Found at i:91828256 original size:132 final size:129
Alignment explanation
Indices: 91828053--91828473 Score: 360
Period size: 132 Copynumber: 3.2 Consensus size: 129
91828043 GACGAAGGGT
* * *
91828053 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTGTAGAACTTATCCCCCTAAGCAGTAGGGA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGTAGAACTTAACCCCCTAAGCAGTAGGGA
* * *
91828118 AACAGATCGAAGATGATGGG-CTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGC
66 AACAGATCGAAGACGAAGGGTC-TTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGC
* * *
91828182 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATT-TACAGATCTTAACCCCCTAAGCAGTA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCG--AATTGT--AGAACTTAACCCCCTAAGCAGTA
* * * * *
91828246 GGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAAC-AGAC-CAAATTGC
62 GGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAAG-CTGAATTTAC
*
91828309 -AGAT
126 AAG-C
** * * * *
91828313 CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATGAGCTTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAA-TTGTA-GAAC-TTAACCCCCTAAGCAGTAG
* * * * *
91828377 GGTAACA-AGCTGAATTTAC-AA--GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATT
63 GGAAACAGATC-GAA--GACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAAGCTG-A-ATT
*
91828438 TAC-AGAT
123 TACAAG-C
* *
91828445 CTTAACCCCCTAAGCAGTAGGGAAACAGA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGA
91828474 TCGGAGACGA
Statistics
Matches: 240, Mismatches: 34, Indels: 33
0.78 0.11 0.11
Matches are distributed among these distances:
128 1 0.00
129 61 0.25
130 33 0.14
131 40 0.17
132 104 0.43
133 1 0.00
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (129 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGTAGAACTTAACCCCCTAAGCAGTAGGGA
AACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGC
Found at i:91828336 original size:218 final size:218
Alignment explanation
Indices: 91827951--91829044 Score: 1433
Period size: 218 Copynumber: 5.0 Consensus size: 218
91827941 CTAGAATCAG
*
91827951 TGAATTCACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
1 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
* *
91828016 CCCTAAGCAGTAAGGAAACAAATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
66 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
* * *
91828081 ACCGAATTGTAGAACTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACC
131 ACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGAGCTTTAACC
91828146 CCCTAAGCAGTAGGGTAACAAGC
196 CCCTAAGCAGTAGGGTAACAAGC
*
91828169 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTTACAGATCTTAACC
1 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
91828234 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
66 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
*
91828299 ACCAAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGAGCTTTAACC
131 ACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGAGCTTTAACC
91828364 CCCTAAGCAGTAGGGTAACAAGC
196 CCCTAAGCAGTAGGGTAACAAGC
91828387 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
1 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
*
91828452 CCCTAAGCAGTAGGGAAACAGATCGGAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
66 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
* * *
91828517 ACCGAATTGTAGATCTTATCCCCCTAAGCAGTAAGGAAACAGATCGAAGATGATGGGCTTTAACC
131 ACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGAGCTTTAACC
*
91828582 CTCTAAGCAGTAGGGTAACAAGC
196 CCCTAAGCAGTAGGGTAACAAGC
91828605 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
1 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
* * * * * * * *
91828670 CCATAAGTAGTAGGGAAACAGATCAAAGATGATGGG-CTTTAACTCCCTAAGCAGTAGGGTAACA
66 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAAC-CCCTAATCGGTAGGGTAACA
* * * ** * * * * *
91828734 -AGCCGAATTTACAAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTGAA-TTGCA-GATC-T
130 GA-CCGAA-TTGCAGATCTT-ATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATGAGCTT
* * * *
91828795 TATCTCCCTAAGCAGTAGTGG-AGC-AGA
191 TAACCCCCTAAGCAGTAG-GGTAACAAGC
* * *
91828822 TCGAA--GACGAAGAACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTG-A-A-TTGCAGATCTT
1 T-GAATTTAC-AAG--CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
* * * * *** ** *
91828882 ATCTCCCTAAGCAGTAGTGG-AGCAAATCGAAGACGAAGAACCTTAAACCCCTACGCAGTAGGGT
62 AACCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGT
*** * * * * * * *
91828946 AACAGGTTGAATTGCAGATATTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGAACC
126 AACAGACCGAATTGCAGATCTTATCCCCCTAAGCAGTAG-GGAAACAGATCGAAGATGATGAGCT
* * *
91829010 TTAAACCCCTAAGCAGTAGGGTAACAGGT
190 TTAACCCCCTAAGCAGTAGGGTAACAAGC
91829039 TGAATT
1 TGAATT
91829045 GCAGATCTTA
Statistics
Matches: 775, Mismatches: 80, Indels: 42
0.86 0.09 0.05
Matches are distributed among these distances:
214 23 0.03
215 15 0.02
216 81 0.10
217 24 0.03
218 561 0.72
219 45 0.06
220 26 0.03
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (218 bp):
TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
ACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGAGCTTTAACC
CCCTAAGCAGTAGGGTAACAAGC
Found at i:91828499 original size:132 final size:129
Alignment explanation
Indices: 91828271--91828515 Score: 330
Period size: 132 Copynumber: 1.9 Consensus size: 129
91828261 GACGAAGGGT
* * * *
91828271 CTTAAACCCCTAATCGGTAGGGTAACAGACCAAATTGCAGATCTTATCCCCCTAAGCAGTAGGGA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAGGGA
* * *
91828336 AACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGC
66 AACAGATCGAAGACGAAGAGCTTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGC
* *
91828400 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGAC-CAA-A-TTACAGATCTTAACCCCCTAAGCAGTAG
* * * *
91828465 GGAAACAGATCGGAGACGAAG-GGTCTTAAACCCCTAATCGGTAGGGTAACA
63 GGAAACAGATCGAAGACGAAGAGCT-TTAAACCCCTAAGCAGTAGGGTAACA
91828516 GACCGAATTG
Statistics
Matches: 99, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
129 27 0.27
130 2 0.02
131 3 0.03
132 67 0.68
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (129 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAGGGA
AACAGATCGAAGACGAAGAGCTTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGC
Found at i:91828626 original size:44 final size:43
Alignment explanation
Indices: 91828578--91828786 Score: 165
Period size: 44 Copynumber: 4.7 Consensus size: 43
91828568 GATGGGCTTT
91828578 AACCCTCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGCCTTA
1 AACCC-CTAAGCAGTAGGGTAACAAGCTGAATTTACAAGCCTTA
* *
91828622 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTAC-AGATCTT-
1 AACCCCTAAGCAGTAGGGTAACAAGCTG-A-ATTTACAAG-CCTTA
* * * * * * ** * *
91828666 AACCCCATAAGTAGTAGGGAAAC-AGATCAAAGATGA-TGGGCTTT
1 AACCCC-TAAGCAGTAGGGTAACAAGCT-GAA-TTTACAAGCCTTA
* *
91828710 AACTCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAA
1 AAC-CCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGCCTT-A
* *
91828755 AACCCCTAAGCAGTAGGGTAACAGGTTGAATT
1 AACCCCTAAGCAGTAGGGTAACAAGCTGAATT
91828787 GCAGATCTTA
Statistics
Matches: 127, Mismatches: 26, Indels: 24
0.72 0.15 0.14
Matches are distributed among these distances:
43 28 0.22
44 68 0.54
45 31 0.24
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (43 bp):
AACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGCCTTA
Found at i:91828700 original size:132 final size:130
Alignment explanation
Indices: 91828489--91828863 Score: 431
Period size: 132 Copynumber: 2.9 Consensus size: 130
91828479 GACGAAGGGT
* * * * * *
91828489 CTTAAACCCCTAATCGGTAGGGTAACAGACCG-AATTGTAGATCTTATCCCCCTAAGCAGTAAGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTGTAGATCTTAACCCCATAAGCAGTAAGG
* * *
91828553 AAACAGATCGAAGATGATGGGCTTTAAC-CCTCTAAGCAGTAGGGTAACAAGCTGAATTTACAAG
66 AAACAGATCAAAGATGATGGGCTTTAACTCC-CTAAGCAGTAGGGTAACAAGCCGAATTTACAAA
91828617 C
130 C
*
91828618 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATT-TACAGATCTTAACCCCATAAGTAGTA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-ATTGT--AGATCTTAACCCCATAAGCAGTA
*
91828682 GGGAAACAGATCAAAGATGATGGGCTTTAACTCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
63 AGGAAACAGATCAAAGATGATGGGCTTTAACTCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
91828747 AAC
128 AAC
* * *
91828750 CTTAAAACCCCTAAGCAGTAGGGTAACAGGTTG-AATTGCAGATCTTATCTCCC-TAAGCAGT-A
1 CTT-AAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTGTAGATCTTAAC-CCCATAAGCAGTAA
* * * * * ** *
91828812 GTGGAGCAGATCGAAGACGAAGAACCTTAAAC-CCCTAAGCAGTAGGGTAACA
64 G-GAAACAGATCAAAGATGATG-GGCTTTAACTCCCTAAGCAGTAGGGTAACA
91828864 GGTTGAATTG
Statistics
Matches: 212, Mismatches: 24, Indels: 19
0.83 0.09 0.07
Matches are distributed among these distances:
129 29 0.14
130 53 0.25
131 15 0.07
132 85 0.40
133 30 0.14
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (130 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTGTAGATCTTAACCCCATAAGCAGTAAGG
AAACAGATCAAAGATGATGGGCTTTAACTCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAAC
Found at i:91829294 original size:86 final size:85
Alignment explanation
Indices: 91828399--91829299 Score: 853
Period size: 86 Copynumber: 10.4 Consensus size: 85
91828389 AATTTACAAG
* * * *
91828399 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTG-A-A-TTGCAGATCTTATCTCCCTAAGCAGTA
* **
91828464 G-GGAAACAGATCGGAGACGAAGGG
63 GTGG-AACAGATCGAAGACGAA-AA
* * * *** * *
91828488 TCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTGTAGATCTTATCCCCCTAAGCAGTAAG-
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGT-AGT
* * ***
91828552 GAAACAGATCGAAGATGATGG
65 GGAACAGATCGAAGACGAAAA
* * * * * * *
91828573 GCTTTAACCCTCTAAGCAGTAGGGTAACAAGCTGAATTTACA-AGCCTTAAAC-CCCTAAGCAGT
1 CCTTAAACCC-CTAAGCAGTAGGGTAACAGGTTGAA-TTGCAGA-TCTT-ATCTCCCTAAGCAGT
* ** *
91828636 AG-GGTAACAG-GCTGAAGATTTACAGA
62 AGTGG-AACAGATC-GAAGA-CGA-AAA
* * * * ** * ** *
91828662 TCTT-AACCCCATAAGTAGTAGGGAAACAGATCAAAGATG-ATGGGCTTTAACTCCCTAAGCAGT
1 CCTTAAACCCC-TAAGCAGTAGGGTAACAGGTTGAA-TTGCA-GATC-TTATCTCCCTAAGCAGT
* *
91828725 AG-GGTAACA-AGCCGAATTTAC--AAA
62 AGTGG-AACAGA-TCGAA--GACGAAAA
91828749 CCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTT-AAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGT
*
91828814 GGAGCAGATCGAAGACGAAGAA
65 GGAACAGATCGAAGACGAA-AA
91828836 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
* *
91828901 GAGCAAATCGAAGACGAAGAA
66 GAACAGATCGAAGACGAA-AA
* *
91828922 CCTTAAACCCCTACGCAGTAGGGTAACAGGTTGAATTGCAGATATTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
91828987 GAGCAGATCGAAGACGAAGAA
66 GAACAGATCGAAGACGAA-AA
91829008 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
91829073 GAGCAGATCGAAGACGAAGAA
66 GAACAGATCGAAGACGAA-AA
91829094 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
91829159 G-GCAGATCGAAGACGAAGAA
66 GAACAGATCGAAGACGAA-AA
* * * ***
91829179 CCTTAAACCCCTAAGCAATAGGGTAACAGGTTGAGTTTACAGATC-TAAAACCCTAAGCAGTAG-
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA-ATTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
91829242 GGAAACAGATC-AAGGATGACAAG
65 GG-AACAGATCGAA-GACGA-AAA
* *
91829265 CCTTAATCCCCTAAGCAGTAGGGTAACAGGCTGAA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAA
91829300 AATTAAATAT
Statistics
Matches: 704, Mismatches: 77, Indels: 66
0.83 0.09 0.08
Matches are distributed among these distances:
84 4 0.01
85 79 0.11
86 452 0.64
87 52 0.07
88 52 0.07
89 63 0.09
90 1 0.00
91 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (85 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
GAACAGATCGAAGACGAAAA
Found at i:91830789 original size:3 final size:3
Alignment explanation
Indices: 91830781--91830822 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
91830771 ATTTATTTAC
91830781 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
91830823 CCATTAATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:91830962 original size:3 final size:3
Alignment explanation
Indices: 91830954--91831074 Score: 86
Period size: 3 Copynumber: 40.7 Consensus size: 3
91830944 AGTATTTTCC
* * * * *
91830954 ATT ATT ATT ATT AAT ATC ACT ACT ATC ATT ATT ATT ATT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * * *
91831001 ACG A-T ACCTT TTT ATT ATT ATT ACT ATT -GT ATT ATT ATT ATT ATT
1 ATT ATT A--TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
91831046 ATT ATC ATC ATC ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
91831075 ATTTCCCTTT
Statistics
Matches: 94, Mismatches: 19, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
2 4 0.04
3 89 0.95
5 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:91831035 original size:17 final size:17
Alignment explanation
Indices: 91831013--91831045 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
91831003 GATACCTTTT
91831013 TATTATTATTACTATTG
1 TATTATTATTACTATTG
*
91831030 TATTATTATTATTATT
1 TATTATTATTACTATT
91831046 ATTATCATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (17 bp):
TATTATTATTACTATTG
Found at i:91831170 original size:20 final size:21
Alignment explanation
Indices: 91831145--91831207 Score: 56
Period size: 26 Copynumber: 2.8 Consensus size: 21
91831135 TATTTTAGCA
91831145 CATTTATTTTATTTATTT-AT
1 CATTTATTTTATTTATTTCAT
91831165 CATTTACTCTCATTATTATTATTTCAT
1 CATTTA-T-T--TTA-T-TTATTTCAT
*
91831192 CATCTATTTTATTTAT
1 CATTTATTTTATTTAT
91831208 AGTTTTTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
20 6 0.17
21 5 0.14
22 2 0.06
23 3 0.09
24 3 0.09
25 2 0.06
26 7 0.20
27 7 0.20
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (21 bp):
CATTTATTTTATTTATTTCAT
Found at i:91837895 original size:12 final size:12
Alignment explanation
Indices: 91837878--91837918 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
91837868 TGTTGAGGTT
91837878 GTTGGGATTGGG
1 GTTGGGATTGGG
91837890 GTTGGGATT-GG
1 GTTGGGATTGGG
91837901 GTTGGGATTGGG
1 GTTGGGATTGGG
*
91837913 TTTGGG
1 GTTGGG
91837919 TTGAAAAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.07, C:0.00, G:0.56, T:0.37
Consensus pattern (12 bp):
GTTGGGATTGGG
Found at i:91837904 original size:11 final size:11
Alignment explanation
Indices: 91837878--91837914 Score: 65
Period size: 11 Copynumber: 3.3 Consensus size: 11
91837868 TGTTGAGGTT
91837878 GTTGGGATTGGG
1 GTTGGGATT-GG
91837890 GTTGGGATTGG
1 GTTGGGATTGG
91837901 GTTGGGATTGG
1 GTTGGGATTGG
91837912 GTT
1 GTT
91837915 TGGGTTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.08, C:0.00, G:0.54, T:0.38
Consensus pattern (11 bp):
GTTGGGATTGG
Found at i:91837911 original size:17 final size:17
Alignment explanation
Indices: 91837879--91837921 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
91837869 GTTGAGGTTG
*
91837879 TTGGGATTGGGGTTGGGA
1 TTGGG-TTGGGATTGGGA
*
91837897 TTGGGTTGGGATTGGGT
1 TTGGGTTGGGATTGGGA
91837914 TTGGGTTG
1 TTGGGTTG
91837922 AAAAAGGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.07, C:0.00, G:0.53, T:0.40
Consensus pattern (17 bp):
TTGGGTTGGGATTGGGA
Found at i:91837920 original size:6 final size:6
Alignment explanation
Indices: 91837879--91837918 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
91837869 GTTGAGGTTG
* *
91837879 TTGGGA TTGGGG TTGGGA TTGGG- TTGGGA TTGGGT TTGGG
1 TTGGGA TTGGGA TTGGGA TTGGGA TTGGGA TTGGGA TTGGG
91837919 TTGAAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.07, C:0.00, G:0.55, T:0.38
Consensus pattern (6 bp):
TTGGGA
Found at i:91840238 original size:34 final size:31
Alignment explanation
Indices: 91840193--91840254 Score: 88
Period size: 34 Copynumber: 1.9 Consensus size: 31
91840183 ATAATATTGT
*
91840193 TAAATATTTAAATTAATTAATAATATTATAAAAA
1 TAAATAATTAAATT-A-TAATAA-ATTATAAAAA
91840227 TAAATAATTAAATTATAATAAATTATAA
1 TAAATAATTAAATTATAATAAATTATAA
91840255 GGATTAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 7 0.26
32 6 0.22
33 1 0.04
34 13 0.48
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (31 bp):
TAAATAATTAAATTATAATAAATTATAAAAA
Found at i:91842168 original size:17 final size:18
Alignment explanation
Indices: 91842130--91842171 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
91842120 TTAATTTTTA
*
91842130 ACTTTTG-CTCAAAAATG
1 ACTTTTGACTCAAAAATC
*
91842147 TCTTTTGACTCAAAAA-C
1 ACTTTTGACTCAAAAATC
91842164 ACTTTTGA
1 ACTTTTGA
91842172 AAAATAATGC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (18 bp):
ACTTTTGACTCAAAAATC
Found at i:91842230 original size:2 final size:2
Alignment explanation
Indices: 91842223--91842262 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
91842213 TTGTTTAACT
91842223 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91842263 AAACGTATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91844158 original size:27 final size:26
Alignment explanation
Indices: 91844110--91844214 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 26
91844100 GTGAGGCTGC
* *
91844110 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
*
91844136 GCAGATATTGTGGCAGAGCCACCAGAA
1 -CAGATATTGTGGCAGAGCCACCAGAT
*
91844163 CAGATATATGTGGCAGAGCCACTAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* *
91844190 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
91844215 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 7 0.10
27 57 0.85
28 3 0.04
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:91844620 original size:8 final size:8
Alignment explanation
Indices: 91844604--91844633 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
91844594 CTCAAAATAC
91844604 CGGCTTTT
1 CGGCTTTT
*
91844612 CGGCATTT
1 CGGCTTTT
91844620 CGGCTTTT
1 CGGCTTTT
91844628 CGGCTT
1 CGGCTT
91844634 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Done.