Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 310 of 335
Found at i:91845841 original size:26 final size:26
Alignment explanation
Indices: 91845811--91845918 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
91845801 TGAAATTCCC
91845811 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
91845837 ATCATGGAACATTTACTTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
91845863 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
91845889 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
91845915 ATCA
1 ATCA
91845919 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:91848820 original size:29 final size:29
Alignment explanation
Indices: 91848788--91848876 Score: 106
Period size: 29 Copynumber: 3.1 Consensus size: 29
91848778 CTACATGTCT
*
91848788 AGACACATGCTCGTGTGGCCTACACGGCC
1 AGACACAAGCTCGTGTGGCCTACACGGCC
* * * *
91848817 AGACACACGCTCATGTGGCCCACACGGTC
1 AGACACAAGCTCGTGTGGCCTACACGGCC
* * *
91848846 AAACACAAGCTCGTGTGGCTTACATGGCC
1 AGACACAAGCTCGTGTGGCCTACACGGCC
91848875 AG
1 AG
91848877 GTACATGACT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.25, C:0.33, G:0.26, T:0.17
Consensus pattern (29 bp):
AGACACAAGCTCGTGTGGCCTACACGGCC
Found at i:91855796 original size:18 final size:18
Alignment explanation
Indices: 91855773--91855820 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
91855763 ATTTAATATT
91855773 AATATAAATTTAAATTTA
1 AATATAAATTTAAATTTA
91855791 AATAT-AATATTAAATTTA
1 AATATAAAT-TTAAATTTA
*
91855809 AATTTAAATTTA
1 AATATAAATTTA
91855821 TTATTATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 3 0.11
18 21 0.78
19 3 0.11
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AATATAAATTTAAATTTA
Found at i:91855804 original size:24 final size:24
Alignment explanation
Indices: 91855763--91855826 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
91855753 AGTTATATTT
91855763 ATTT-AATATTAATA-TAAATTTAA
1 ATTTAAATA-TAATATTAAATTTAA
91855786 ATTTAAATATAATATTAAATTTAA
1 ATTTAAATATAATATTAAATTTAA
* *
91855810 ATTTAAATTTATTATTA
1 ATTTAAATATAATATTA
91855827 TGTTTTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 9 0.24
24 28 0.76
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
ATTTAAATATAATATTAAATTTAA
Found at i:91855809 original size:6 final size:6
Alignment explanation
Indices: 91855777--91855820 Score: 63
Period size: 6 Copynumber: 7.3 Consensus size: 6
91855767 AATATTAATA
*
91855777 TAAATT TAAATT TAAATA T-AATAT TAAATT TAAATT TAAATT TA
1 TAAATT TAAATT TAAATT TAAAT-T TAAATT TAAATT TAAATT TA
91855821 TTATTATGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 3 0.09
6 28 0.82
7 3 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TAAATT
Found at i:91860265 original size:9 final size:9
Alignment explanation
Indices: 91860249--91860299 Score: 84
Period size: 9 Copynumber: 5.7 Consensus size: 9
91860239 GGTTGCAAGA
91860249 ACGATGAGG
1 ACGATGAGG
*
91860258 ATGATGAGG
1 ACGATGAGG
*
91860267 ACGACGAGG
1 ACGATGAGG
91860276 ACGATGAGG
1 ACGATGAGG
91860285 ACGATGAGG
1 ACGATGAGG
91860294 ACGATG
1 ACGATG
91860300 TTTCTTCGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.33, C:0.12, G:0.43, T:0.12
Consensus pattern (9 bp):
ACGATGAGG
Found at i:91860486 original size:11 final size:11
Alignment explanation
Indices: 91860457--91860568 Score: 84
Period size: 11 Copynumber: 10.1 Consensus size: 11
91860447 GTGTTGTTGG
91860457 TGATGCTGTTTTT
1 TGATGCTG--TTT
91860470 TG-TGCTGTTT
1 TGATGCTGTTT
*
91860480 TGTTGCTGTTT
1 TGATGCTGTTT
* *
91860491 GGGTGCTGTTT
1 TGATGCTGTTT
* *
91860502 TGATGGTATTTT
1 TGATGCT-GTTT
91860514 TG-TGCTGTTT
1 TGATGCTGTTT
* *
91860524 TGATGGTATTT
1 TGATGCTGTTT
* *
91860535 TGGTGTTGTTT
1 TGATGCTGTTT
91860546 TGATGCTGTTT
1 TGATGCTGTTT
* *
91860557 TGGTGCTATTT
1 TGATGCTGTTT
91860568 T
1 T
91860569 ACTGCTACTT
Statistics
Matches: 79, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
10 10 0.13
11 57 0.72
12 10 0.13
13 2 0.03
ACGTcount: A:0.06, C:0.06, G:0.29, T:0.58
Consensus pattern (11 bp):
TGATGCTGTTT
Found at i:91860499 original size:22 final size:22
Alignment explanation
Indices: 91860442--91860568 Score: 119
Period size: 22 Copynumber: 5.7 Consensus size: 22
91860432 TTTTGCAGGT
* * *
91860442 TTTTGGTGTTGTTGGTGATGCTGT
1 TTTTGGTGCTGTT-TTGATGCT-A
* * *
91860466 TTTTTGTGCTGTTTTGTTGCTG
1 TTTTGGTGCTGTTTTGATGCTA
* *
91860488 TTTGGGTGCTGTTTTGATGGTA
1 TTTTGGTGCTGTTTTGATGCTA
* *
91860510 TTTTTGTGCTGTTTTGATGGTA
1 TTTTGGTGCTGTTTTGATGCTA
* *
91860532 TTTTGGTGTTGTTTTGATGCTG
1 TTTTGGTGCTGTTTTGATGCTA
*
91860554 TTTTGGTGCTATTTT
1 TTTTGGTGCTGTTTT
91860569 ACTGCTACTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
22 68 0.80
23 6 0.07
24 11 0.13
ACGTcount: A:0.06, C:0.06, G:0.31, T:0.58
Consensus pattern (22 bp):
TTTTGGTGCTGTTTTGATGCTA
Found at i:91860536 original size:33 final size:33
Alignment explanation
Indices: 91860467--91860568 Score: 93
Period size: 33 Copynumber: 3.1 Consensus size: 33
91860457 TGATGCTGTT
* * * * *
91860467 TTTTG-TGCTGTTTTGTTGCTGTTTGGGTGCTG
1 TTTTGATGTTGTTTTGATGCTGTTTTGATGCTA
*
91860499 TTTTGATGGTAT-TTTTG-TGCTGTTTTGATGGTA
1 TTTTGAT-GT-TGTTTTGATGCTGTTTTGATGCTA
* *
91860532 TTTTGGTGTTGTTTTGATGCTGTTTTGGTGCTA
1 TTTTGATGTTGTTTTGATGCTGTTTTGATGCTA
91860565 TTTT
1 TTTT
91860569 ACTGCTACTT
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
31 1 0.02
32 12 0.21
33 37 0.65
34 6 0.11
35 1 0.02
ACGTcount: A:0.06, C:0.06, G:0.29, T:0.59
Consensus pattern (33 bp):
TTTTGATGTTGTTTTGATGCTGTTTTGATGCTA
Found at i:91864348 original size:38 final size:38
Alignment explanation
Indices: 91864297--91864371 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
91864287 AAAAGCAAAG
91864297 AAAAAAAATCTTGCAATTAGTTTAATTAATTAATTTTT
1 AAAAAAAATCTTGCAATTAGTTTAATTAATTAATTTTT
91864335 AAAAAAAATCTTGCAATTAGTTTAATTAATTAATTTT
1 AAAAAAAATCTTGCAATTAGTTTAATTAATTAATTTT
91864372 ATCTTCCATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.44
Consensus pattern (38 bp):
AAAAAAAATCTTGCAATTAGTTTAATTAATTAATTTTT
Found at i:91868653 original size:17 final size:16
Alignment explanation
Indices: 91868633--91868666 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
91868623 TTCATGACTG
*
91868633 ACATTCATTTGACATTC
1 ACATTCATCTG-CATTC
91868650 ACATTCATCTGCATTC
1 ACATTCATCTGCATTC
91868666 A
1 A
91868667 TTCATACATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.38
Consensus pattern (16 bp):
ACATTCATCTGCATTC
Found at i:91877040 original size:71 final size:69
Alignment explanation
Indices: 91876942--91877115 Score: 217
Period size: 71 Copynumber: 2.5 Consensus size: 69
91876932 TTTTCAAGGG
* *
91876942 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
91877006 GTTTT
65 GTTTT
** * *
91877011 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
91877076 TGTTTT
64 TGTTTT
** * *
91877082 AAATTGACTCATATTGCGAGAGGTGA-TTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
91877116 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
68 7 0.08
69 23 0.25
71 60 0.65
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:91877236 original size:72 final size:70
Alignment explanation
Indices: 91877115--91877279 Score: 233
Period size: 72 Copynumber: 2.3 Consensus size: 70
91877105 TGATTAAGCC
** * *
91877115 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
91877179 TGAGGTA
65 TGA-GTA
*
91877186 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
91877251 TGAGTA
65 TGAGTA
* *
91877257 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
91877280 ACATTGTTCA
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
70 8 0.09
71 20 0.24
72 53 0.62
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (70 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGTA
Found at i:91877620 original size:140 final size:140
Alignment explanation
Indices: 91877213--91877976 Score: 1392
Period size: 139 Copynumber: 5.5 Consensus size: 140
91877203 TTAATTTCAA
91877213 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGA-GTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
91877277 TTTACATTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91877342 TCAAAATCAG
131 TCAAAATCAG
91877352 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
91877416 TTTACGTTGTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91877481 TCAAAATCAG
131 TCAAAATCAG
*
91877491 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
91877556 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91877621 TCAAAATCAG
131 TCAAAATCAG
91877631 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
91877696 TTTACGTTGTTCAAGAATCAACTCATATTGCAAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91877761 TCAAAATCAG
131 TCAAAATCAG
*
91877771 CTCATATTGCGAGA-GTGAGTTGAGCCTTAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
91877835 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91877900 TCAAAATCAG
131 TCAAAATCAG
*
91877910 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTAATTTCAATTTCTGTTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGTTTT
91877974 CAA
63 CAA
91877977 AATTCAACTC
Statistics
Matches: 606, Mismatches: 13, Indels: 9
0.96 0.02 0.01
Matches are distributed among these distances:
138 7 0.01
139 299 0.49
140 272 0.45
142 28 0.05
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:91877791 original size:279 final size:280
Alignment explanation
Indices: 91877213--91877976 Score: 1392
Period size: 279 Copynumber: 2.7 Consensus size: 280
91877203 TTAATTTCAA
91877213 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGA-GTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
91877277 TTTACATTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91877342 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
* *
91877406 CTGTTTTCAATTTACGTTGTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAATTTACGTTGTTCAAAAATCAACTCATATTGCAAGAAGTGGGTTGAACCTTTTAAT
91877471 TTCTACTTTTTCAAAATCAG
261 TTCTACTTTTTCAAAATCAG
*
91877491 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
91877556 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91877621 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
*
91877686 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCAAGAAGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAATTTACGTTGTTCAAAAATCAACTCATATTGCAAGAAGTGGGTTGAACCTTTTAAT
91877751 TTCTACTTTTTCAAAATCAG
261 TTCTACTTTTTCAAAATCAG
*
91877771 CTCATATTGCGAGA-GTGAGTTGAGCCTTAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
91877835 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
91877900 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTAATTTCAA
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAA
91877964 TTTCTGTTTTCAA
193 TTTCTGTTTTCAA
91877977 AATTCAACTC
Statistics
Matches: 470, Mismatches: 11, Indels: 7
0.96 0.02 0.01
Matches are distributed among these distances:
278 42 0.09
279 283 0.60
280 117 0.25
281 28 0.06
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (280 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
CTGTTTTCAATTTACGTTGTTCAAAAATCAACTCATATTGCAAGAAGTGGGTTGAACCTTTTAAT
TTCTACTTTTTCAAAATCAG
Found at i:91877833 original size:13 final size:13
Alignment explanation
Indices: 91877815--91877848 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
91877805 CGCTGAGGTA
*
91877815 TTTTCAATTTCTG
1 TTTTCAATTTATG
91877828 TTTTCAATTTATG
1 TTTTCAATTTATG
91877841 TTGTTCAA
1 TT-TTCAA
91877849 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:91878004 original size:74 final size:71
Alignment explanation
Indices: 91877897--91878043 Score: 197
Period size: 74 Copynumber: 2.0 Consensus size: 71
91877887 AATTTCTACT
* ** * *
91877897 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTAATTT
1 TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATTT
91877961 CAATTTCTG
63 CAATTTCTG
*
91877970 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
91878035 ATTTCTG
65 ATTTCTG
91878042 TT
1 TT
91878044 CAAAATGATT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
72 26 0.39
73 9 0.14
74 30 0.45
75 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (71 bp):
TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
TTTCTG
Found at i:91878057 original size:48 final size:49
Alignment explanation
Indices: 91877997--91878091 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 49
91877987 ATATTGCGAG
*
91877997 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
91878046 AAATGA-TTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
91878092 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 39 0.87
49 6 0.13
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:91878161 original size:120 final size:120
Alignment explanation
Indices: 91877948--91878163 Score: 396
Period size: 120 Copynumber: 1.8 Consensus size: 120
91877938 CGGTTCACAT
91877948 GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
1 GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
*
91878013 AAGACACGTTGAGGTAATTTCAATTTCTGTTCAAAATGATTGAGCCTCAAGACAC
66 AAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGATTGAGCCTCAAGACAC
*
91878068 GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTC
1 GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
* *
91878133 AAGACATGCTGAGGTATTTTCAATTTCTGTT
66 AAGACACGCTGAGGTAATTTCAATTTCTGTT
91878164 TTTCAAAAAA
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 92 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (120 bp):
GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
AAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGATTGAGCCTCAAGACAC
Found at i:91878307 original size:75 final size:75
Alignment explanation
Indices: 91878046--91878397 Score: 439
Period size: 75 Copynumber: 4.7 Consensus size: 75
91878036 TTTCTGTTCA
* *
91878046 AAATGA-TTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
91878107 ATATTGCGAG
66 ATATTGCGAG
* *
91878117 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC----AAAAAAATCA
*
91878182 ACTCATATTGTGAG
62 ACTCATATTGCGAG
91878196 AAATGAGTTGAGCCT-AAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
91878260 ATATTGCGAG
66 ATATTGCGAG
** * * *
91878270 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTC-AAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* *
91878333 GTATTGTGAG
66 ATATTGCGAG
*** * * *
91878343 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
91878398 TTTCTGCCTT
Statistics
Matches: 248, Mismatches: 20, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
71 5 0.02
72 36 0.15
73 44 0.18
74 40 0.16
75 50 0.20
76 4 0.02
77 1 0.00
78 34 0.14
79 34 0.14
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:91878472 original size:92 final size:93
Alignment explanation
Indices: 91878320--91878489 Score: 236
Period size: 92 Copynumber: 1.8 Consensus size: 93
91878310 TTCTGTTGTC
* * *
91878320 AAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
*
91878385 TTCCGTTTTTCAATTTCTGCCTTTCAAA
66 TTCCGTCTTTCAATTTCTGCCTTTCAAA
* * * *
91878413 AAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCAA
*
91878476 TTTCTGTCTTTCAA
65 TTTCCGTCTTTCAA
91878490 AAAAATCAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
91 2 0.03
92 43 0.64
93 22 0.33
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (93 bp):
AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
TTCCGTCTTTCAATTTCTGCCTTTCAAA
Found at i:91878546 original size:169 final size:164
Alignment explanation
Indices: 91878227--91878549 Score: 443
Period size: 169 Copynumber: 1.9 Consensus size: 164
91878217 CGCTGAGGTA
**
91878227 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * *
91878292 CGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCC
66 CGCTGAGCTAATTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCC
* *
91878357 TCAGGTCACACGCCGAGGTATTTTCAATTTCCGT
131 TCAGATCACACACCGAGGTATTTTCAATTTCCGT
*
91878391 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCT-TGGC
1 TTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
* * * *
91878454 TCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
63 --ACACGCTGAGCTAATTTCAATTTCTGT-TGTC-AAAAAATCAACTCATATTGCGAGAGGCGAG
* *
91878519 TTGAGCTTCAGATCACACACTGAGGTATTTT
124 TTGAGCCTCAGATCACACACCGAGGTATTTT
91878550 TTCAATTTAT
Statistics
Matches: 138, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
164 19 0.14
165 13 0.09
166 25 0.18
167 24 0.17
168 3 0.02
169 54 0.39
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (164 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGCTAATTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCC
TCAGATCACACACCGAGGTATTTTCAATTTCCGT
Found at i:91878548 original size:77 final size:76
Alignment explanation
Indices: 91878391--91878768 Score: 325
Period size: 79 Copynumber: 4.8 Consensus size: 76
91878381 CAATTTCCGT
*
91878391 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTGGCT
*
91878455 CACGCGCTGAGCTA
63 CACACGCTGAGCTA
* *
91878469 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-GGCTCA
* *
91878534 CACACTGAGGTA
65 CACGCTGAGCTA
* * * * * * *
91878546 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTGGCT
* *
91878611 CACATG-TCGAGGTA
63 CACACGCT-GAGCTA
** * *
91878625 TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTCTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
***
91878690 GCCTTGGCTCATGTGCTGAGCTA
55 G-CTTGGCTCACACGCTGAGCTA
*
91878713 TTTTTAATTT-T-T-TTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTT
1 TTTTCAATTTCTGTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCTT
91878769 TTTAATTTCT
Statistics
Matches: 250, Mismatches: 31, Indels: 42
0.77 0.10 0.13
Matches are distributed among these distances:
74 8 0.03
75 28 0.11
76 28 0.11
77 39 0.16
78 20 0.08
79 62 0.25
80 2 0.01
84 1 0.00
85 5 0.02
86 1 0.00
87 1 0.00
88 54 0.22
89 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (76 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTGGCTCAC
ACGCTGAGCTA
Found at i:91878749 original size:242 final size:238
Alignment explanation
Indices: 91878173--91878975 Score: 869
Period size: 246 Copynumber: 3.3 Consensus size: 238
91878163 TTTTCAAAAA
* * ** * *
91878173 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTAAG---ACACGCTGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
* * *
91878235 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGA
66 TTC--TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGA
* * * * * *
91878298 GGTA-ATTTCAATTTCTGTTGTCAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGG
129 GGTATTTTTCAATTTCTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
* * ** * *
91878362 TCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
193 TCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTG--TTTC
91878410 AAAAAAAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTC
1 ---AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTC
91878474 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
63 AATTTCT-T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
* * *
91878539 TGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGC
126 TGAGGTA-TTTTTCAATTTCT-TTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
91878604 CTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGTTTTC
188 CTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTCTG-TTTC
* * *
91878657 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTGCTGAGCTATTTTTAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
* * *
91878721 TT-TTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAG
66 TTCTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-AC
* *
91878784 AGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGA-AGGTGAGTT
124 A-CTGAGGT-A-T-TTTTCAATTTCT-TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * * * **
91878846 GAACCTTCAGTTACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
184 GAGCC-TCGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
* *
91878902 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
91878967 TTCTGTTTT
66 TTCT-TTTT
91878976 TAATGTCTGT
Statistics
Matches: 486, Mismatches: 49, Indels: 48
0.83 0.08 0.08
Matches are distributed among these distances:
239 14 0.03
240 23 0.05
241 12 0.02
242 98 0.20
243 24 0.05
244 55 0.11
245 6 0.01
246 121 0.25
247 36 0.07
248 79 0.16
249 14 0.03
250 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (238 bp):
AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
TTCTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGG
TATTTTTCAATTTCTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCA
CATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
Found at i:91878784 original size:30 final size:30
Alignment explanation
Indices: 91878748--91878809 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
91878738 CAACTCATAT
91878748 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
91878778 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
91878808 TG
1 TG
91878810 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:91879665 original size:26 final size:25
Alignment explanation
Indices: 91879631--91879679 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
91879621 GCCCCCCAAA
91879631 AAAAACCTAACCCAAAAAGAAAAAAG
1 AAAAACCTAACCCAAAAA-AAAAAAG
91879657 AAAAACCTAACCCAAAAAAAAAA
1 AAAAACCTAACCCAAAAAAAAAA
91879680 CCAAGAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.71, C:0.20, G:0.04, T:0.04
Consensus pattern (25 bp):
AAAAACCTAACCCAAAAAAAAAAAG
Found at i:91879688 original size:26 final size:26
Alignment explanation
Indices: 91879631--91879689 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
91879621 GCCCCCCAAA
*
91879631 AAAAACCTAACCCAAAAAGAAAAAAG
1 AAAAACCTAACCCAAAAAGAAAAAAC
*
91879657 AAAAACCTAACCCAAAAA-AAAAACC
1 AAAAACCTAACCCAAAAAGAAAAAAC
91879682 AAGAAACC
1 AA-AAACC
91879690 CTAGCCACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 7 0.23
26 23 0.77
ACGTcount: A:0.68, C:0.24, G:0.05, T:0.03
Consensus pattern (26 bp):
AAAAACCTAACCCAAAAAGAAAAAAC
Found at i:91880481 original size:37 final size:39
Alignment explanation
Indices: 91880439--91880537 Score: 98
Period size: 40 Copynumber: 2.5 Consensus size: 39
91880429 CTAATATTTT
*
91880439 CTTTTATTGTAGATATTATTAT-TATTATTAT-TACATA
1 CTTTTATTATAGATATTATTATGTATTATTATGTACATA
*
91880476 CTTTTATTATATGCATA-TATATATGTATTTTTATGTACATA
1 CTTTTATTATA-G-ATATTAT-TATGTATTATTATGTACATA
* *
91880517 -TTATTATTTTATATATTATTA
1 CTT-TTATTATAGATATTATTA
91880538 CCAAATATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
37 10 0.20
38 4 0.08
39 11 0.22
40 13 0.25
41 13 0.25
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (39 bp):
CTTTTATTATAGATATTATTATGTATTATTATGTACATA
Found at i:91881305 original size:3 final size:3
Alignment explanation
Indices: 91881292--91881332 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
91881282 TTATACCTAT
*
91881292 ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
91881333 TTATATTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:91890591 original size:26 final size:26
Alignment explanation
Indices: 91890544--91890614 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
91890534 TTAATATTTA
* *
91890544 TTTTATTTTATTTT-TATAATTG-GCC
1 TTTTA-TTTATTTTCTTTTATTGTGCC
91890569 TTTTTATTTATTTTCTTTTATTGTGCC
1 -TTTTATTTATTTTCTTTTATTGTGCC
*
91890596 TTTCATTTA--TTCTTTTATT
1 TTTTATTTATTTTCTTTTATT
91890615 TATTTGCTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
24 10 0.25
25 8 0.20
26 19 0.47
27 3 0.08
ACGTcount: A:0.15, C:0.10, G:0.06, T:0.69
Consensus pattern (26 bp):
TTTTATTTATTTTCTTTTATTGTGCC
Found at i:91891763 original size:21 final size:21
Alignment explanation
Indices: 91891723--91891761 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
91891713 ATGAGTTAGT
*
91891723 AAAATATGAAATATAATTTAA
1 AAAATATGAAAAATAATTTAA
91891744 AAAATAT-AAAAATAATTT
1 AAAATATGAAAAATAATTT
91891762 TATATTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
AAAATATGAAAAATAATTTAA
Found at i:91892852 original size:16 final size:16
Alignment explanation
Indices: 91892831--91892870 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
91892821 TATTCATTCA
91892831 AATCATTTTAAATTTG
1 AATCATTTTAAATTTG
*
91892847 AATCATTTTAGATTTG
1 AATCATTTTAAATTTG
91892863 AAT-ATTTT
1 AATCATTTT
91892871 CGAGTTTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (16 bp):
AATCATTTTAAATTTG
Found at i:91897260 original size:26 final size:25
Alignment explanation
Indices: 91897223--91897296 Score: 67
Period size: 26 Copynumber: 2.9 Consensus size: 25
91897213 GGACATAATA
* *
91897223 AATTATATTAATATGAAGAGTTTTT
1 AATTAAATTAATATAAAGAGTTTTT
* * *
91897248 ATATTAAATTAATAAAATAAATTTTTT
1 A-ATTAAATTAATATAA-AGAGTTTTT
* *
91897275 AATTGAATTAATATTAAGAGTT
1 AATTAAATTAATATAAAGAGTT
91897297 AATTAAAAAT
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
25 5 0.14
26 24 0.65
27 8 0.22
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (25 bp):
AATTAAATTAATATAAAGAGTTTTT
Found at i:91897471 original size:19 final size:20
Alignment explanation
Indices: 91897438--91897475 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
91897428 GAAGGAAGAT
*
91897438 ATTTTATATTTTTGTTTGAA
1 ATTTTATATTGTTGTTTGAA
91897458 ATTTT-TATTGTTGTTTGA
1 ATTTTATATTGTTGTTTGA
91897476 GGTGGGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66
Consensus pattern (20 bp):
ATTTTATATTGTTGTTTGAA
Found at i:91899831 original size:29 final size:29
Alignment explanation
Indices: 91899789--91899846 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
91899779 AACCCAAAAG
91899789 TTTAATCCTAGCTTTCAGAATCGTGCAAT
1 TTTAATCCTAGCTTTCAGAATCGTGCAAT
91899818 TTTAATCCTAGCTTTCAGAATCGTGCAAT
1 TTTAATCCTAGCTTTCAGAATCGTGCAAT
91899847 CTGAAAACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (29 bp):
TTTAATCCTAGCTTTCAGAATCGTGCAAT
Found at i:91906828 original size:22 final size:22
Alignment explanation
Indices: 91906786--91906828 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
91906776 TATTTTTTCA
* *
91906786 ATTTTTTAAATTAGTTATAATT
1 ATTTTTAAAATTAATTATAATT
91906808 ATTTTTAAATATTAATT-TAAT
1 ATTTTTAAA-ATTAATTATAAT
91906829 AATATTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTTTTAAAATTAATTATAATT
Found at i:91906912 original size:24 final size:24
Alignment explanation
Indices: 91906880--91906928 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
91906870 TTTTTCAAAC
91906880 TCGTACTTTCATATATATTATAGA
1 TCGTACTTTCATATATATTATAGA
91906904 TCGTACTTTCATATATATTATAGA
1 TCGTACTTTCATATATATTATAGA
91906928 T
1 T
91906929 TAACCAAACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (24 bp):
TCGTACTTTCATATATATTATAGA
Found at i:91911251 original size:10 final size:10
Alignment explanation
Indices: 91911236--91911262 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
91911226 AGTCATAACC
91911236 CCCATGTGAA
1 CCCATGTGAA
91911246 CCCATGTGAA
1 CCCATGTGAA
91911256 CCCATGT
1 CCCATGT
91911263 ATGTGAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (10 bp):
CCCATGTGAA
Found at i:91911279 original size:15 final size:15
Alignment explanation
Indices: 91911249--91911305 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
91911239 ATGTGAACCC
91911249 ATGTGAACCC-ATGT
1 ATGTGAACCCTATGT
91911263 ATGTGAACCCTATGT
1 ATGTGAACCCTATGT
* *
91911278 ATATGAACCTCATATAT
1 ATGTGAACC-C-TATGT
*
91911295 ATGAGAACCCT
1 ATGTGAACCCT
91911306 TTATATGCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 10 0.28
15 13 0.36
16 2 0.06
17 11 0.31
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (15 bp):
ATGTGAACCCTATGT
Found at i:91911331 original size:29 final size:30
Alignment explanation
Indices: 91911292--91911360 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 30
91911282 GAACCTCATA
* *
91911292 TATATGAGAACCCTTTATATGCAAAC-CCC
1 TATATGTGAACCCTGTATATGCAAACACCC
* *
91911321 TATATGTGAACCCTGTATGTGCGAACACCC
1 TATATGTGAACCCTGTATATGCAAACACCC
91911351 TATATGTGAA
1 TATATGTGAA
91911361 AACCCTACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
29 22 0.63
30 13 0.37
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (30 bp):
TATATGTGAACCCTGTATATGCAAACACCC
Found at i:91911365 original size:15 final size:15
Alignment explanation
Indices: 91911290--91911372 Score: 53
Period size: 15 Copynumber: 5.5 Consensus size: 15
91911280 ATGAACCTCA
* *
91911290 TATATATGAGAACCC
1 TATATGTGAAAACCC
* * *
91911305 TTTATATGCAAACCCC
1 TATATGTG-AAAACCC
91911321 TATATGTG--AACCC
1 TATATGTGAAAACCC
* *
91911334 TGTATGTGCGAACACCC
1 TATATGT--GAAAACCC
91911351 TATATGTGAAAACCC
1 TATATGTGAAAACCC
*
91911366 TACATGT
1 TATATGT
91911373 AAACTTGTTA
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
13 10 0.19
15 21 0.40
16 11 0.21
17 10 0.19
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (15 bp):
TATATGTGAAAACCC
Found at i:91915104 original size:92 final size:92
Alignment explanation
Indices: 91914942--91915119 Score: 311
Period size: 92 Copynumber: 1.9 Consensus size: 92
91914932 AAAGCAAAAG
* *
91914942 AATGGCTTTACAGGATCACTTCAGTGATCAATGTAATGCCTTCGACTTAGCCAAAACTCTTAAGC
1 AATGGCTTTACAGGATCACTTCAGTGATCAATGTAATGCCTTCAACTTAGCCAAAACTCCTAAGC
*
91915007 TGGGTCGGGGGTGTTACAAACTTGTAT
66 CGGGTCGGGGGTGTTACAAACTTGTAT
* *
91915034 AATGGCTTTACAGGATCACTTCGGTGATCAATGTAATGCCTTTAACTTAGCCAAAACTCCTAAGC
1 AATGGCTTTACAGGATCACTTCAGTGATCAATGTAATGCCTTCAACTTAGCCAAAACTCCTAAGC
91915099 CGGGTCGGGGGTGTTACAAAC
66 CGGGTCGGGGGTGTTACAAAC
91915120 CTGCATAGGT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 81 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (92 bp):
AATGGCTTTACAGGATCACTTCAGTGATCAATGTAATGCCTTCAACTTAGCCAAAACTCCTAAGC
CGGGTCGGGGGTGTTACAAACTTGTAT
Found at i:91915481 original size:36 final size:36
Alignment explanation
Indices: 91915440--91915512 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
91915430 GGTTTATGAA
91915440 AAGATCTAATTTACTTTTGGTTTTATAGCTTTGTGT
1 AAGATCTAATTTACTTTTGGTTTTATAGCTTTGTGT
91915476 AAGATCTAATTTACTTTTGGTTTTATAGCTTTGTGT
1 AAGATCTAATTTACTTTTGGTTTTATAGCTTTGTGT
91915512 A
1 A
91915513 TAATCACACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.23, C:0.08, G:0.16, T:0.52
Consensus pattern (36 bp):
AAGATCTAATTTACTTTTGGTTTTATAGCTTTGTGT
Found at i:91915860 original size:29 final size:27
Alignment explanation
Indices: 91915788--91915862 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 27
91915778 CTTGTATTCT
* *
91915788 TTTTACATTTGAAATTTAGTCCATTTAC
1 TTTTA-ATTTAAAATTTAGTCCATCTAC
* *
91915816 TTTTATTTCTAGAAATTTAGTCCCTCTAC
1 TTTTAATT-TA-AAATTTAGTCCATCTAC
91915845 TTTTAGGATTTAAAATTT
1 TTTTA--ATTTAAAATTT
91915863 CAAGTCCACT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 2 0.05
28 6 0.16
29 26 0.68
30 2 0.05
31 2 0.05
ACGTcount: A:0.28, C:0.13, G:0.08, T:0.51
Consensus pattern (27 bp):
TTTTAATTTAAAATTTAGTCCATCTAC
Found at i:91916442 original size:22 final size:22
Alignment explanation
Indices: 91916415--91916460 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
91916405 GTTGATTTTA
91916415 TTTTATTTTCCATAATTAGATT
1 TTTTATTTTCCATAATTAGATT
91916437 TTTTATTTTCCATAATTAGATT
1 TTTTATTTTCCATAATTAGATT
91916459 TT
1 TT
91916461 AAAAAATACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.61
Consensus pattern (22 bp):
TTTTATTTTCCATAATTAGATT
Found at i:91923692 original size:16 final size:16
Alignment explanation
Indices: 91923671--91923702 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
91923661 AGAAAGTGTC
91923671 AACACGATATCATTTA
1 AACACGATATCATTTA
91923687 AACACGATATCATTTA
1 AACACGATATCATTTA
91923703 TCCGTGTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (16 bp):
AACACGATATCATTTA
Found at i:91926251 original size:21 final size:18
Alignment explanation
Indices: 91926205--91926238 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91926195 ATTTTAATAT
*
91926205 AAAAT-CTTGAAATAAAA
1 AAAATACTTTAAATAAAA
91926222 AAAATACTTTAAATAAA
1 AAAATACTTTAAATAAA
91926239 CCAAAAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAATACTTTAAATAAAA
Found at i:91933208 original size:26 final size:26
Alignment explanation
Indices: 91933174--91933239 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
91933164 CATATTTAAA
*
91933174 TAATATAAATTTAAATATATTT-TATTT
1 TAAT-TAAATTTAAATAT-TTTAAATTT
* *
91933201 TAATTAAAATTAAGTATTTTAAATTT
1 TAATTAAATTTAAATATTTTAAATTT
* *
91933227 AAATTTAATTTAA
1 TAATTAAATTTAA
91933240 TTGCATATTA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
25 3 0.09
26 25 0.78
27 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (26 bp):
TAATTAAATTTAAATATTTTAAATTT
Found at i:91934931 original size:2 final size:2
Alignment explanation
Indices: 91934924--91934965 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
91934914 GAAGACTGAA
* * *
91934924 AT AT AT AT AT AT AT AT AT AA AT TT AA AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91934966 TATTTTAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91934958 original size:24 final size:24
Alignment explanation
Indices: 91934926--91934975 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
91934916 AGACTGAAAT
91934926 ATATATATATATATATAAATTTAA
1 ATATATATATATATATAAATTTAA
* *
91934950 ATATATATATATATATTATTTTAA
1 ATATATATATATATATAAATTTAA
91934974 AT
1 AT
91934976 TTAACATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
ATATATATATATATATAAATTTAA
Found at i:91935266 original size:28 final size:26
Alignment explanation
Indices: 91935204--91935267 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 26
91935194 TTTTCTTTTT
*
91935204 AATATAAAATTTTAAAAAAAACTTAC
1 AATATAAAATTTTAAAAAAAAATTAC
91935230 ATATGATAAAA-TTTAAACACAAAATATTAC
1 A-AT-ATAAAATTTTAAA-A-AAAA-ATTAC
91935260 AATATAAA
1 AATATAAA
91935268 GATGATATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
26 1 0.03
27 8 0.25
28 12 0.38
29 6 0.19
30 5 0.16
ACGTcount: A:0.61, C:0.08, G:0.02, T:0.30
Consensus pattern (26 bp):
AATATAAAATTTTAAAAAAAAATTAC
Found at i:91935603 original size:2 final size:2
Alignment explanation
Indices: 91935596--91935633 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
91935586 ATTAAATTTA
91935596 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91935634 GAGAGATGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91935862 original size:3 final size:3
Alignment explanation
Indices: 91935854--91935888 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
91935844 ACAGCTGCAC
* *
91935854 CTT CTT CTT CTT CTT CTT CTT CTT CCT CAT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
91935889 GTTCTAAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.03, C:0.37, G:0.00, T:0.60
Consensus pattern (3 bp):
CTT
Found at i:91936326 original size:32 final size:31
Alignment explanation
Indices: 91936264--91936326 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
91936254 AGTTCTGTTT
* *
91936264 GTATCAAAATTGAAATTTCAAAATACGAAAA
1 GTATAAAAATTGAAATATCAAAATACGAAAA
*
91936295 GTATAAAAATTGGAAATGATCAAATTA-GAAAA
1 GTATAAAAATT-GAAAT-ATCAAAATACGAAAA
91936327 TAATGAGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 10 0.37
32 10 0.37
33 7 0.26
ACGTcount: A:0.56, C:0.06, G:0.13, T:0.25
Consensus pattern (31 bp):
GTATAAAAATTGAAATATCAAAATACGAAAA
Found at i:91941051 original size:5 final size:5
Alignment explanation
Indices: 91941043--91941094 Score: 60
Period size: 5 Copynumber: 11.4 Consensus size: 5
91941033 CAAAGTAAAG
*
91941043 AATAA AAT-A CAT-A AAT-A AAT-A AAT-A AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
91941088 AATAA AA
1 AATAA AA
91941095 GAATCTTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
4 18 0.41
5 26 0.59
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:91941613 original size:21 final size:20
Alignment explanation
Indices: 91941585--91941624 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
91941575 CCATTCTCTT
*
91941585 CTCCTTCTCCCTCTATTTTC
1 CTCCTTCTCCATCTATTTTC
*
91941605 CTCCATTCTCCATCTCTTTT
1 CTCC-TTCTCCATCTATTTT
91941625 AACGTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.07, C:0.42, G:0.00, T:0.50
Consensus pattern (20 bp):
CTCCTTCTCCATCTATTTTC
Found at i:91944564 original size:13 final size:14
Alignment explanation
Indices: 91944548--91944633 Score: 52
Period size: 13 Copynumber: 5.9 Consensus size: 14
91944538 TAAAACATAG
91944548 ATATAAAAATATA-
1 ATATAAAAATATAC
*
91944561 ATATTAAAATATAC
1 ATATAAAAATATAC
*
91944575 ATAT-AATATATA-
1 ATATAAAAATATAC
91944587 AGGGTATATAAGAATATAC
1 A---TATA-AA-AATATAC
* *
91944606 ATATACATAATATAA
1 ATATA-AAAATATAC
*
91944621 AAATAAAAATATA
1 ATATAAAAATATA
91944634 TGTACAGCAT
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
12 1 0.02
13 19 0.33
14 11 0.19
15 13 0.23
16 5 0.09
17 2 0.04
18 5 0.09
19 1 0.02
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.31
Consensus pattern (14 bp):
ATATAAAAATATAC
Found at i:91944568 original size:14 final size:14
Alignment explanation
Indices: 91944535--91944578 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
91944525 CATAGTATGG
* *
91944535 TATTAAAACATAGA
1 TATTAAAATATACA
*
91944549 TATAAAAATATA-A
1 TATTAAAATATACA
91944562 TATTAAAATATACA
1 TATTAAAATATACA
91944576 TAT
1 TAT
91944579 AATATATAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (14 bp):
TATTAAAATATACA
Found at i:91944593 original size:56 final size:58
Alignment explanation
Indices: 91944500--91944633 Score: 134
Period size: 56 Copynumber: 2.3 Consensus size: 58
91944490 TATGTGTACT
* *
91944500 AATAT-ATAATAAAATATAATATATACATAGTATGGTAT-TAA-AACATAGATATA-AA
1 AATATAATAATAAAATATAATATATACATAG-AGGGTATATAAGAACATACATATACAA
* * * *
91944555 AATATAATATTAAAATATACATATAATATATA-AGGGTATATAAGAATATACATATACAT
1 AATATAATAATAAAATATA-ATAT-ATACATAGAGGGTATATAAGAACATACATATACAA
*
91944614 AATATAAAAATAAAAATATA
1 AATATAATAAT-AAAATATA
91944634 TGTACAGCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
55 5 0.08
56 18 0.28
57 7 0.11
58 16 0.25
59 10 0.16
60 8 0.12
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (58 bp):
AATATAATAATAAAATATAATATATACATAGAGGGTATATAAGAACATACATATACAA
Found at i:91944928 original size:22 final size:21
Alignment explanation
Indices: 91944864--91944928 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
91944854 AACTAAGTAT
*
91944864 AATAATGATATAA-AGAAAATAA
1 AATAATAATATAATA-AAAAT-A
**
91944886 AATAATAATATGTTAAAAATA
1 AATAATAATATAATAAAAATA
*
91944907 AATAATAAATATAATAACAATA
1 AATAAT-AATATAATAAAAATA
91944929 TTGAAACACA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 7 0.20
22 27 0.77
23 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (21 bp):
AATAATAATATAATAAAAATA
Found at i:91945020 original size:8 final size:8
Alignment explanation
Indices: 91944997--91945034 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
91944987 TACGTAATAT
*
91944997 ATATATAT
1 ATATATAC
91945005 ATATATAC
1 ATATATAC
91945013 ATATATAC
1 ATATATAC
*
91945021 ATA-AAAC
1 ATATATAC
91945028 ATATATA
1 ATATATA
91945035 AACATTGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (8 bp):
ATATATAC
Found at i:91945175 original size:3 final size:3
Alignment explanation
Indices: 91945167--91945199 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
91945157 ACAAAAGCAC
91945167 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91945200 TGAAAATAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:91947014 original size:54 final size:54
Alignment explanation
Indices: 91946932--91947148 Score: 364
Period size: 54 Copynumber: 4.0 Consensus size: 54
91946922 ATGTGACCCG
*
91946932 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
91946986 AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTGAAAAACATG-AATTAAA
1 AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTGAAAAACA-GAAATTAAA
* * * *
91947040 AGGTTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAA
1 AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
*
91947094 AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAA
1 AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
91947148 A
1 A
91947149 ATAGCTCAGC
Statistics
Matches: 152, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
53 1 0.01
54 150 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.29
Consensus pattern (54 bp):
AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
Found at i:91947853 original size:72 final size:72
Alignment explanation
Indices: 91947264--91948411 Score: 1474
Period size: 72 Copynumber: 15.7 Consensus size: 72
91947254 GTGTGACCTA
*** * * *
91947264 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCA
* *
91947329 GCGTGTCCTG
63 ACGTGTCTTG
*** ** * * *
91947339 AGGCTCAACTCGCCTCTCGCAATACAAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAA
*
91947404 CGTGTCCTG
64 CGTGTCTTG
* *** * *
91947413 GGGCTCAACTCGCCTCTCGCAAT-TCGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATAT-GAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCA
* *
91947477 GCGTGTCCTG
63 ACGTGTCTTG
*** * * * *
91947487 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAA
*
91947552 CGTGTCCTG
64 CGTGTCTTG
*** * *
91947561 AGGCTCAACTCGCCTCTCGCAAT-TCGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATAT-GAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCA
* * *
91947625 GCGTGTCCTA
63 ACGTGTCTTG
** * * * **
91947635 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCTGACAACAGAAATTGAAAATACCTCGG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTT-TGAAAACAGAAATTGAAATTACCTCAA
*
91947700 CGTGTGACCTG
64 CGTGT--CTTG
*** ** * * *
91947711 AGGCTCAACTCGCCTCTCGCAATACAAATTGATTTTTTGAAAAGCAGAAATTGAAAATACCTCAA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAA-CAGAAATTGAAATTACCTCAA
*
91947776 TGTGTCTTG
64 CGTGTCTTG
91947785 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91947850 TGTCTTG
66 TGTCTTG
*
91947857 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
* *
91947922 ATGTCTTA
65 GTGTCTTG
**
91947930 AGGCTCAACTCATTTCTCATAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91947995 TGTCTTG
66 TGTCTTG
*
91948002 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91948067 TGTCTTG
66 TGTCTTG
91948074 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91948139 TGTCTTG
66 TGTCTTG
* *
91948146 AGGCTGAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91948211 TGTCTTG
66 TGTCTTG
*
91948218 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
91948283 GTGTCTTG
65 GTGTCTTG
91948291 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91948356 TGTCTTG
66 TGTCTTG
91948363 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTG-AAACAGAAAT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAGAAAT
91948412 AAAAGCATTA
Statistics
Matches: 1014, Mismatches: 48, Indels: 25
0.93 0.04 0.02
Matches are distributed among these distances:
72 420 0.41
73 156 0.15
74 342 0.34
75 37 0.04
76 59 0.06
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCTTG
Found at i:91948025 original size:217 final size:216
Alignment explanation
Indices: 91947264--91948411 Score: 1474
Period size: 217 Copynumber: 5.2 Consensus size: 216
91947254 GTGTGACCTA
*** * * *
91947264 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCA
* * *** ** * *
91947329 GCGTGTCCTGAGGCTCAACTCGCCTCTCGCAATACAAGTTGATTTTTTTGACAACAGAAATTGAA
63 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAA
* * * *** * *
91947394 ATTACCTCAGCGTGTCCTGGGGCTCAACTCGCCTCTCGCAAT-TCGAGTTGATTTTTTTGACAAC
126 ATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT-GAGTTGA--ATTTTGAAAAC
* *
91947458 AGAAATTGAAATTACCTCAGCGTGTCCTG
188 AGAAATTGAAATTACCTCAACGTGTCTTG
*** * * * *
91947487 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAA
* *** * *
91947552 CGTGTCCTGAGGCTCAACTCGCCTCTCGCAAT-TCGAGTTGATTTTTTTGACAACAGAAATTGAA
64 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT-GAGTTGA--ATTTTGAAAACAGAAATTGAA
* * * ** * *
91947616 ATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCTGACAACA
126 ATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTT-TGAAAACA
* ** *
91947681 GAAATTGAAAATACCTCGGCGTGTGACCTG
189 GAAATTGAAATTACCTCAACGTGT--CTTG
*** ** * * *
91947711 AGGCTCAACTCGCCTCTCGCAATACAAATTGATTTTTTGAAAAGCAGAAATTGAAAATACCTCAA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAA-CAGAAATTGAAATTACCTCAA
*
91947776 TGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATT
64 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATT
91947841 ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAA
129 ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAA
* * *
91947906 TTGAAAATACCTCAACATGTCTTA
193 TTGAAATTACCTCAACGTGTCTTG
**
91947930 AGGCTCAACTCATTTCTCATAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
91947995 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTAC
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
91948060 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTG
131 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTG
91948125 AAATTACCTCAACGTGTCTTG
196 AAATTACCTCAACGTGTCTTG
* *
91948146 AGGCTGAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
91948211 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATA
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTA
91948276 CCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
130 CCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
91948341 GAAATTACCTCAACGTGTCTTG
195 GAAATTACCTCAACGTGTCTTG
91948363 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTG-AAACAGAAAT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAGAAAT
91948412 AAAAGCATTA
Statistics
Matches: 861, Mismatches: 54, Indels: 26
0.91 0.06 0.03
Matches are distributed among these distances:
216 137 0.16
217 282 0.33
218 14 0.02
219 26 0.03
220 5 0.01
221 31 0.04
222 235 0.27
223 43 0.05
224 87 0.10
225 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (216 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTG
AAATTACCTCAACGTGTCTTG
Found at i:91950004 original size:9 final size:8
Alignment explanation
Indices: 91949989--91950029 Score: 50
Period size: 7 Copynumber: 5.1 Consensus size: 8
91949979 CTCCATTTTC
91949989 TTTTCTTT
1 TTTTCTTT
91949997 TCTTTCTTT
1 T-TTTCTTT
91950006 TTTT-TTT
1 TTTTCTTT
91950013 TTTT-TTT
1 TTTTCTTT
91950020 TTTTACTTT
1 TTTT-CTTT
91950029 T
1 T
91950030 GAATGAATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 14 0.47
8 4 0.13
9 12 0.40
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTCTTT
Found at i:91950654 original size:20 final size:19
Alignment explanation
Indices: 91950610--91950674 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 19
91950600 TTGATCTCTC
**
91950610 TTTTTATTTTTTTTCCTTG
1 TTTTTATTTTTTTTTTTTG
91950629 TCTTTTATTTTTTTATTTTTG
1 T-TTTTATTTTTTT-TTTTTG
* *
91950650 TTTTTTTGTTTTTTCTTTTTC
1 TTTTTAT-TTTTTT-TTTTTG
91950671 TTTT
1 TTTT
91950675 CATGACTGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
19 1 0.03
20 17 0.45
21 20 0.53
ACGTcount: A:0.05, C:0.08, G:0.05, T:0.83
Consensus pattern (19 bp):
TTTTTATTTTTTTTTTTTG
Found at i:91955011 original size:13 final size:14
Alignment explanation
Indices: 91954995--91955080 Score: 52
Period size: 13 Copynumber: 5.9 Consensus size: 14
91954985 TAAAACATAG
91954995 ATATAAAAATATA-
1 ATATAAAAATATAC
*
91955008 ATATTAAAATATAC
1 ATATAAAAATATAC
*
91955022 ATAT-AATATATA-
1 ATATAAAAATATAC
91955034 AGGGTATATAAGAATATAC
1 A---TATA-AA-AATATAC
* *
91955053 ATATACATAATATAA
1 ATATA-AAAATATAC
*
91955068 AAATAAAAATATA
1 ATATAAAAATATA
91955081 TGTACAGCAT
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
12 1 0.02
13 19 0.33
14 11 0.19
15 13 0.23
16 5 0.09
17 2 0.04
18 5 0.09
19 1 0.02
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.31
Consensus pattern (14 bp):
ATATAAAAATATAC
Found at i:91955015 original size:14 final size:14
Alignment explanation
Indices: 91954982--91955025 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
91954972 CATAGTATGG
* *
91954982 TATTAAAACATAGA
1 TATTAAAATATACA
*
91954996 TATAAAAATATA-A
1 TATTAAAATATACA
91955009 TATTAAAATATACA
1 TATTAAAATATACA
91955023 TAT
1 TAT
91955026 AATATATAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (14 bp):
TATTAAAATATACA
Found at i:91955040 original size:56 final size:58
Alignment explanation
Indices: 91954947--91955080 Score: 134
Period size: 56 Copynumber: 2.3 Consensus size: 58
91954937 TATGTGTACT
* *
91954947 AATAT-ATAATAAAATATAATATATACATAGTATGGTAT-TAA-AACATAGATATA-AA
1 AATATAATAATAAAATATAATATATACATAG-AGGGTATATAAGAACATACATATACAA
* * * *
91955002 AATATAATATTAAAATATACATATAATATATA-AGGGTATATAAGAATATACATATACAT
1 AATATAATAATAAAATATA-ATAT-ATACATAGAGGGTATATAAGAACATACATATACAA
*
91955061 AATATAAAAATAAAAATATA
1 AATATAATAAT-AAAATATA
91955081 TGTACAGCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
55 5 0.08
56 18 0.28
57 7 0.11
58 16 0.25
59 10 0.16
60 8 0.12
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (58 bp):
AATATAATAATAAAATATAATATATACATAGAGGGTATATAAGAACATACATATACAA
Found at i:91955467 original size:8 final size:8
Alignment explanation
Indices: 91955438--91955481 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
91955428 CTATACGTAA
*
91955438 ATATATAT
1 ATATACAT
*
91955446 ATATATAT
1 ATATACAT
91955454 ATATACAT
1 ATATACAT
91955462 ATATACAT
1 ATATACAT
*
91955470 A-AAACAT
1 ATATACAT
91955477 ATATA
1 ATATA
91955482 AACATTGGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
7 6 0.19
8 26 0.81
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.39
Consensus pattern (8 bp):
ATATACAT
Found at i:91955620 original size:3 final size:3
Alignment explanation
Indices: 91955612--91955656 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
91955602 ACAAAAGCAC
91955612 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91955657 TGAAAATAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:91957059 original size:20 final size:20
Alignment explanation
Indices: 91957036--91957099 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
91957026 AAAAAAAAAA
91957036 AAAGAATAAAAAAATTAACG
1 AAAGAATAAAAAAATTAACG
* *
91957056 AAAGCAAGAAAATGAAA--AA-A
1 AAAG-AATAAAA--AAATTAACG
91957076 AAAGAATAAAAAAATTAACG
1 AAAGAATAAAAAAATTAACG
91957096 AAAG
1 AAAG
91957100 CAAGAAAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
17 3 0.09
19 8 0.24
20 12 0.35
21 8 0.24
23 3 0.09
ACGTcount: A:0.72, C:0.05, G:0.12, T:0.11
Consensus pattern (20 bp):
AAAGAATAAAAAAATTAACG
Found at i:91957085 original size:40 final size:40
Alignment explanation
Indices: 91957030--91957110 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
91957020 AAACCTAAAA
91957030 AAAAAAAAAGAATAAAAAAATTAACGAAAGCAAGAAAATG
1 AAAAAAAAAGAATAAAAAAATTAACGAAAGCAAGAAAATG
91957070 AAAAAAAAAGAATAAAAAAATTAACGAAAGCAAGAAAATG
1 AAAAAAAAAGAATAAAAAAATTAACGAAAGCAAGAAAATG
91957110 A
1 A
91957111 CATTGTGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.73, C:0.05, G:0.12, T:0.10
Consensus pattern (40 bp):
AAAAAAAAAGAATAAAAAAATTAACGAAAGCAAGAAAATG
Found at i:91961157 original size:19 final size:19
Alignment explanation
Indices: 91961133--91961197 Score: 51
Period size: 19 Copynumber: 3.5 Consensus size: 19
91961123 GCTCAATCAA
91961133 TTGAATCATTTTTTTTAAC
1 TTGAATCATTTTTTTTAAC
* ** *** *
91961152 TTGAATTAGCTCAATCAA-
1 TTGAATCATTTTTTTTAAC
91961170 TTGAATCATTTTTTTTAAC
1 TTGAATCATTTTTTTTAAC
*
91961189 TTGATTCAT
1 TTGAATCAT
91961198 GGGTTTACCA
Statistics
Matches: 30, Mismatches: 15, Indels: 2
0.64 0.32 0.04
Matches are distributed among these distances:
18 11 0.37
19 19 0.63
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (19 bp):
TTGAATCATTTTTTTTAAC
Found at i:91961168 original size:37 final size:37
Alignment explanation
Indices: 91961118--91961192 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
91961108 AAATAGAGAA
91961118 AATTAGCTCAATCAATTGAATCATTTTTTTTAACTTG
1 AATTAGCTCAATCAATTGAATCATTTTTTTTAACTTG
91961155 AATTAGCTCAATCAATTGAATCATTTTTTTTAACTTG
1 AATTAGCTCAATCAATTGAATCATTTTTTTTAACTTG
91961192 A
1 A
91961193 TTCATGGGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.45
Consensus pattern (37 bp):
AATTAGCTCAATCAATTGAATCATTTTTTTTAACTTG
Found at i:91961697 original size:22 final size:22
Alignment explanation
Indices: 91961672--91961714 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
91961662 ATAGTAAAAG
* *
91961672 AAAAA-AAATATTTTTTTTTAC
1 AAAAACAAAAATTTTTATTTAC
*
91961693 AAAAACAACAATTTTTATTTAC
1 AAAAACAAAAATTTTTATTTAC
91961715 TTTTAATATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAAACAAAAATTTTTATTTAC
Found at i:91963167 original size:20 final size:20
Alignment explanation
Indices: 91963134--91963172 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
91963124 TATTTTTTAT
*
91963134 ATTTTTATACTTTTTAAATA
1 ATTTTTATACTTTTGAAATA
91963154 ATTTTTAT-CATTTTGAAAT
1 ATTTTTATAC-TTTTGAAAT
91963173 TTTAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTTTTATACTTTTGAAATA
Found at i:91963175 original size:28 final size:28
Alignment explanation
Indices: 91963122--91963180 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
91963112 AAAATTAAAT
* * * *
91963122 AATATTTTTTATATTTTTATACTTTTTA
1 AATAATTTTTATATTTTGATAATTTTAA
91963150 AATAATTTTTATCATTTTGA-AATTTTAA
1 AATAATTTTTAT-ATTTTGATAATTTTAA
91963178 AAT
1 AAT
91963181 TTAAAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (28 bp):
AATAATTTTTATATTTTGATAATTTTAA
Found at i:91965759 original size:24 final size:24
Alignment explanation
Indices: 91965732--91965780 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
91965722 TTCAATAGTA
91965732 GATAAGGCTATTGTAGCTTGAAGT
1 GATAAGGCTATTGTAGCTTGAAGT
91965756 GATAAGGCTATTGTAGCTTGAAGT
1 GATAAGGCTATTGTAGCTTGAAGT
91965780 G
1 G
91965781 TTGCTTTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.31, T:0.33
Consensus pattern (24 bp):
GATAAGGCTATTGTAGCTTGAAGT
Found at i:91968682 original size:23 final size:23
Alignment explanation
Indices: 91968656--91968700 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
91968646 GTGATGAATG
* *
91968656 TTAAAAATAAAATAAAATATTAT
1 TTAAAAAGAAAATAAAAAATTAT
91968679 TTAAAAAGAAAATAAAAAATTA
1 TTAAAAAGAAAATAAAAAATTA
91968701 GAGATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (23 bp):
TTAAAAAGAAAATAAAAAATTAT
Found at i:91970229 original size:3 final size:3
Alignment explanation
Indices: 91970221--91970268 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
91970211 GCCTTAAGAA
91970221 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91970269 TAAGCCATTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:91970459 original size:29 final size:30
Alignment explanation
Indices: 91970432--91970492 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
91970422 TAATATTATA
91970432 TTTTCTCATAAAAATATTAAAAAATTATAAT
1 TTTTCTCA-AAAAATATTAAAAAATTATAAT
* * *
91970463 TTTTTTCAAAAATTATT-AAAAATTAAAAT
1 TTTTCTCAAAAAATATTAAAAAATTATAAT
91970492 T
1 T
91970493 GATATAAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 12 0.44
30 8 0.30
31 7 0.26
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (30 bp):
TTTTCTCAAAAAATATTAAAAAATTATAAT
Found at i:91970517 original size:20 final size:20
Alignment explanation
Indices: 91970494--91970531 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
91970484 ATTAAAATTG
* *
91970494 ATATAAACTTTATAAAAATA
1 ATATAAAATTAATAAAAATA
91970514 ATATAAAATTAATAAAAA
1 ATATAAAATTAATAAAAA
91970532 CATATTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
ATATAAAATTAATAAAAATA
Found at i:91970561 original size:8 final size:9
Alignment explanation
Indices: 91970550--91970609 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 9
91970540 AAATTTTATG
91970550 AAAAAT-TA
1 AAAAATATA
91970558 AAAAATCATA
1 AAAAAT-ATA
91970568 AAAAATTATA
1 AAAAA-TATA
91970578 AACAAATATA
1 AA-AAATATA
* *
91970588 AAATATCTA
1 AAAAATATA
*
91970597 ATAAATTATA
1 A-AAAATATA
91970607 AAA
1 AAA
91970610 TTATTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 6 0.14
9 8 0.19
10 24 0.57
11 4 0.10
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (9 bp):
AAAAATATA
Found at i:91970584 original size:29 final size:29
Alignment explanation
Indices: 91970552--91970608 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
91970542 ATTTTATGAA
91970552 AAAT-TAAAAAATCATAAAAAATTATAAAC
1 AAATATAAAAAATC-TAAAAAATTATAAAC
* *
91970581 AAATATAAAATATCTAATAAATTATAAA
1 AAATATAAAAAATCTAAAAAATTATAAA
91970609 ATTATTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (29 bp):
AAATATAAAAAATCTAAAAAATTATAAAC
Found at i:91971281 original size:9 final size:9
Alignment explanation
Indices: 91971267--91971395 Score: 59
Period size: 9 Copynumber: 13.8 Consensus size: 9
91971257 CCAATAAATA
91971267 AAATTTTAT
1 AAATTTTAT
91971276 AAATTTTAT
1 AAATTTTAT
* *
91971285 AAGTTTATTT
1 AAATTT-TAT
*
91971295 AAA-ATTAT
1 AAATTTTAT
*
91971303 AATTTTTA-
1 AAATTTTAT
91971311 AAATATTTAT
1 AAAT-TTTAT
*
91971321 AAGTTTT-T
1 AAATTTTAT
*
91971329 ATAATATTCAT
1 A-AAT-TTTAT
*
91971340 AAGGTTTTAT
1 AA-ATTTTAT
*
91971350 GAATTTTTTAT
1 -AA-ATTTTAT
*
91971361 AATTTTTAT
1 AAATTTTAT
*
91971370 AAGTTTATAT
1 AAATTT-TAT
91971380 AAATTTT-T
1 AAATTTTAT
91971388 AATATTTT
1 AA-ATTTT
91971396 TATGTGAAAA
Statistics
Matches: 92, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
8 12 0.13
9 45 0.49
10 24 0.26
11 11 0.12
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.56
Consensus pattern (9 bp):
AAATTTTAT
Found at i:91971286 original size:19 final size:18
Alignment explanation
Indices: 91971264--91971395 Score: 63
Period size: 19 Copynumber: 7.0 Consensus size: 18
91971254 GAACCAATAA
*
91971264 ATAAAATTTTATAAATTTT
1 ATAAATTTTTA-AAATTTT
*
91971283 ATAAGTTTATTTAAAA--TT
1 ATAA-ATT-TTTAAAATTTT
91971301 AT-AATTTTTAAAATATTT
1 ATAAATTTTTAAAAT-TTT
* * *
91971319 ATAAGTTTTTATAATATTC
1 ATAAATTTTTAAAAT-TTT
** *
91971338 ATAAGGTTTTATGAATTTT
1 ATAAATTTTTA-AAATTTT
* *
91971357 TTATAATTTTTATAAGTTTAT
1 ATA-AATTTTTA-AAATTT-T
*
91971378 ATAAATTTTTAATATTTT
1 ATAAATTTTTAAAATTTT
91971396 TATGTGAAAA
Statistics
Matches: 87, Mismatches: 17, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
15 7 0.08
16 2 0.02
17 1 0.01
18 9 0.10
19 35 0.40
20 26 0.30
21 7 0.08
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.55
Consensus pattern (18 bp):
ATAAATTTTTAAAATTTT
Found at i:91971304 original size:18 final size:19
Alignment explanation
Indices: 91971270--91971348 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
91971260 ATAAATAAAA
91971270 TTTTATAAAT-TTTATAAGT
1 TTTTA-AAATATTTATAAGT
*
91971289 TTATTTAAA-A-TTATAA-T
1 TT-TTAAAATATTTATAAGT
91971306 TTTTAAAATATTTATAAGT
1 TTTTAAAATATTTATAAGT
* * *
91971325 TTTTATAATATTCATAAGG
1 TTTTAAAATATTTATAAGT
91971344 TTTTA
1 TTTTA
91971349 TGAATTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
16 5 0.10
17 4 0.08
18 12 0.24
19 27 0.54
20 2 0.04
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTTAAAATATTTATAAGT
Found at i:91971331 original size:10 final size:9
Alignment explanation
Indices: 91971299--91971398 Score: 76
Period size: 9 Copynumber: 10.4 Consensus size: 9
91971289 TTATTTAAAA
91971299 TTATAATTT
1 TTATAATTT
* *
91971308 TTAAAATAT
1 TTATAATTT
91971317 TTATAAGTTT
1 TTATAA-TTT
*
91971327 TTATAATAT
1 TTATAATTT
* *
91971336 TCATAAGGTT
1 TTATAA-TTT
91971346 TTATGAATTTT
1 TTAT-AA-TTT
91971357 TTATAATTT
1 TTATAATTT
91971366 TTATAAGTTT
1 TTATAA-TTT
*
91971376 ATATAAATTT
1 TTAT-AATTT
91971386 TTA-ATATTT
1 TTATA-ATTT
91971395 TTAT
1 TTAT
91971399 GTGAAAAATA
Statistics
Matches: 71, Mismatches: 13, Indels: 13
0.73 0.13 0.13
Matches are distributed among these distances:
8 1 0.01
9 35 0.49
10 25 0.35
11 10 0.14
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.58
Consensus pattern (9 bp):
TTATAATTT
Found at i:91971360 original size:11 final size:10
Alignment explanation
Indices: 91971299--91971388 Score: 53
Period size: 10 Copynumber: 9.3 Consensus size: 10
91971289 TTATTTAAAA
91971299 TTATAA-TTT
1 TTATAATTTT
* *
91971308 TTA-AAATAT
1 TTATAATTTT
*
91971317 TTATAAGTTT
1 TTATAATTTT
*
91971327 TTATAA-TAT
1 TTATAATTTT
* **
91971336 TCATAAGGTT
1 TTATAATTTT
91971346 TTATGAATTTT
1 TTAT-AATTTT
91971357 TTATAA-TTT
1 TTATAATTTT
*
91971366 TTATAAGTTT
1 TTATAATTTT
* *
91971376 ATATAAATTT
1 TTATAATTTT
91971386 TTA
1 TTA
91971389 ATATTTTTAT
Statistics
Matches: 63, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
8 2 0.03
9 24 0.38
10 29 0.46
11 8 0.13
ACGTcount: A:0.37, C:0.01, G:0.06, T:0.57
Consensus pattern (10 bp):
TTATAATTTT
Found at i:91971360 original size:30 final size:28
Alignment explanation
Indices: 91971316--91971388 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 28
91971306 TTTTAAAATA
*
91971316 TTTATAAGTTTTTATAATATTCATAAGGT
1 TTTATAATTTTTTATAATATTCATAA-GT
* *
91971345 TTTATGAATTTTTTATAATTTTTATAAGT
1 TTTAT-AATTTTTTATAATATTCATAAGT
*
91971374 TTATATAAATTTTTA
1 TT-TATAATTTTTTA
91971389 ATATTTTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 17 0.45
30 21 0.55
ACGTcount: A:0.34, C:0.01, G:0.07, T:0.58
Consensus pattern (28 bp):
TTTATAATTTTTTATAATATTCATAAGT
Found at i:91971855 original size:14 final size:14
Alignment explanation
Indices: 91971836--91971879 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
91971826 ATATCAAATA
91971836 ATTTTTTATTATAT
1 ATTTTTTATTATAT
*
91971850 ATTTTTTAATATTAT
1 ATTTTTTATTA-TAT
* *
91971865 ATTCTTTATCATAT
1 ATTTTTTATTATAT
91971879 A
1 A
91971880 ATGATATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (14 bp):
ATTTTTTATTATAT
Found at i:91979931 original size:18 final size:18
Alignment explanation
Indices: 91979904--91979941 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
91979894 ATGAACAAAT
*
91979904 TTATGCAAAATTCAAAAC
1 TTATGAAAAATTCAAAAC
91979922 TTATGAAAAATTCAAAAC
1 TTATGAAAAATTCAAAAC
91979940 TT
1 TT
91979942 GAGCTTAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.13, G:0.05, T:0.32
Consensus pattern (18 bp):
TTATGAAAAATTCAAAAC
Found at i:91980618 original size:17 final size:18
Alignment explanation
Indices: 91980594--91980650 Score: 69
Period size: 19 Copynumber: 3.0 Consensus size: 18
91980584 ACAAAGAAAT
*
91980594 ATTTAAAAAATTTATAAA
1 ATTTAAAAAATATATAAA
*
91980612 ATTAAAAAAAATATATAAA
1 ATT-TAAAAAATATATAAA
91980631 ATTTAAAAAGAATATATAAA
1 ATTT-AAAA-AATATATAAA
91980651 GAATACTCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 3 0.09
19 20 0.61
20 10 0.30
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
ATTTAAAAAATATATAAA
Found at i:91980622 original size:19 final size:20
Alignment explanation
Indices: 91980598--91980650 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
91980588 AGAAATATTT
*
91980598 AAAAAATTTATAAAA-TTAA
1 AAAAAATATATAAAATTTAA
91980617 AAAAAATATATAAAATTTAA
1 AAAAAATATATAAAATTTAA
*
91980637 AAAGAATATATAAA
1 AAAAAATATATAAA
91980651 GAATACTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAAAATATATAAAATTTAA
Found at i:91992543 original size:4 final size:4
Alignment explanation
Indices: 91992536--91992562 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
91992526 ATCGAATATA
91992536 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
91992563 TGAATGCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:91993679 original size:11 final size:12
Alignment explanation
Indices: 91993657--91993699 Score: 68
Period size: 12 Copynumber: 3.5 Consensus size: 12
91993647 TTATTTGACC
91993657 TTTTAGGTTTTT
1 TTTTAGGTTTTT
91993669 TTTTAGGTTTTTT
1 TTTTAGG-TTTTT
*
91993682 TTTTAAGTTTTT
1 TTTTAGGTTTTT
91993694 TTTTAG
1 TTTTAG
91993700 AGAAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 17 0.61
13 11 0.39
ACGTcount: A:0.12, C:0.00, G:0.14, T:0.74
Consensus pattern (12 bp):
TTTTAGGTTTTT
Found at i:91993682 original size:13 final size:13
Alignment explanation
Indices: 91993657--91993697 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
91993647 TTATTTGACC
91993657 TTTTAGG-TTTTT
1 TTTTAGGTTTTTT
91993669 TTTTAGGTTTTTT
1 TTTTAGGTTTTTT
*
91993682 TTTTAAGTTTTTT
1 TTTTAGGTTTTTT
91993695 TTT
1 TTT
91993698 AGAGAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 7 0.26
13 20 0.74
ACGTcount: A:0.10, C:0.00, G:0.12, T:0.78
Consensus pattern (13 bp):
TTTTAGGTTTTTT
Found at i:91995153 original size:2 final size:2
Alignment explanation
Indices: 91995146--91995179 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
91995136 AAAGAAAATA
91995146 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91995180 TTACACATAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91995294 original size:2 final size:2
Alignment explanation
Indices: 91995287--91995337 Score: 77
Period size: 2 Copynumber: 26.0 Consensus size: 2
91995277 GAAAAGTAAA
* *
91995287 AT AT AT AT AT CT AT AT AT AT AT A- AT AT AT AT AT AT AT CT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91995328 AT AT AT AT AT
1 AT AT AT AT AT
91995338 TTAATAACTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:92001622 original size:2 final size:2
Alignment explanation
Indices: 92001615--92001642 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
92001605 CCAGGTACCC
92001615 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
92001643 AATGGCTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:92001811 original size:10 final size:9
Alignment explanation
Indices: 92001795--92001819 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
92001785 GATACCTGCA
92001795 CTTTTTTTT
1 CTTTTTTTT
92001804 CTTTTTTTT
1 CTTTTTTTT
92001813 CTTTTTT
1 CTTTTTT
92001820 ATCCTTGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:92002045 original size:18 final size:18
Alignment explanation
Indices: 92002022--92002056 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
92002012 CTAGTTTGAC
92002022 AATTTTTAGATT-TTTATG
1 AATTTTTA-ATTATTTATG
92002040 AATTTTTAATTATTTAT
1 AATTTTTAATTATTTAT
92002057 TTAATTATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (18 bp):
AATTTTTAATTATTTATG
Found at i:92007336 original size:48 final size:48
Alignment explanation
Indices: 92007281--92007377 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
92007271 AATAATCTAA
92007281 ACCTAAGCTACTAAAGCTAAAAATGTAATAATTAAATATAAAATATTT
1 ACCTAAGCTACTAAAGCTAAAAATGTAATAATTAAATATAAAATATTT
*
92007329 ACCTAAGCTACTAAAGCTAAAAATGTAATAATTAAATATAAGATATTT
1 ACCTAAGCTACTAAAGCTAAAAATGTAATAATTAAATATAAAATATTT
92007377 A
1 A
92007378 TAAAACAAGC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.31
Consensus pattern (48 bp):
ACCTAAGCTACTAAAGCTAAAAATGTAATAATTAAATATAAAATATTT
Found at i:92010534 original size:23 final size:22
Alignment explanation
Indices: 92010483--92010534 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
92010473 ATTTTTTTCA
* *
92010483 AAAAAATATTTTTTATTTTATT
1 AAAATATATTTTTTATTTTATG
92010505 AAAATATATTTTTTATTTCTATG
1 AAAATATATTTTTTATTT-TATG
*
92010528 AATATAT
1 AAAATAT
92010535 TAAATATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
AAAATATATTTTTTATTTTATG
Found at i:92015713 original size:23 final size:23
Alignment explanation
Indices: 92015665--92015713 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
92015655 TTTTGAGCAA
*
92015665 TTTAATTTTTTCTTTTATGTTCT
1 TTTAATTTTTTCTTTTATGTTAT
* *
92015688 TTTAATTTTCTTTTTTTCT-TTAT
1 TTTAATTTT-TTCTTTTATGTTAT
92015711 TTT
1 TTT
92015714 TCATTCTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTAATTTTTTCTTTTATGTTAT
Found at i:92022891 original size:13 final size:14
Alignment explanation
Indices: 92022868--92022902 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
92022858 AAAACTGATG
92022868 TTTTTGATTTAGTT-
1 TTTTTG-TTTAGTTC
92022882 TTTTTGTTTAGTTC
1 TTTTTGTTTAGTTC
92022896 TTTTTGT
1 TTTTTGT
92022903 AAAATACTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.09, C:0.03, G:0.14, T:0.74
Consensus pattern (14 bp):
TTTTTGTTTAGTTC
Found at i:92032746 original size:9 final size:9
Alignment explanation
Indices: 92032732--92032769 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
92032722 TCTTTTTCTC
92032732 TTTATTTAT
1 TTTATTTAT
92032741 TTTATTTA-
1 TTTATTTAT
92032749 TTTATTTTAT
1 TTTA-TTTAT
*
92032759 TTTATGTAT
1 TTTATTTAT
92032768 TT
1 TT
92032770 ATTATTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
8 4 0.15
9 18 0.69
10 4 0.15
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (9 bp):
TTTATTTAT
Found at i:92032772 original size:13 final size:13
Alignment explanation
Indices: 92032732--92032760 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
92032722 TCTTTTTCTC
92032732 TTTATTTATTTTA
1 TTTATTTATTTTA
92032745 TTTATTTATTTTA
1 TTTATTTATTTTA
92032758 TTT
1 TTT
92032761 TATGTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:92032851 original size:21 final size:23
Alignment explanation
Indices: 92032825--92032874 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
92032815 TTATTAATAT
*
92032825 ATATTTTGAA-ATTACTTTTTTA
1 ATATTTTAAATATTACTTTTTTA
*
92032847 A-ATTTTAAATATTATTTTTTTA
1 ATATTTTAAATATTACTTTTTTA
92032869 ATATTT
1 ATATTT
92032875 AGATATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 13 0.54
23 4 0.17
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (23 bp):
ATATTTTAAATATTACTTTTTTA
Found at i:92032880 original size:22 final size:22
Alignment explanation
Indices: 92032825--92032881 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
92032815 TTATTAATAT
* *
92032825 ATATTTTGAAATTACTTTTTTA
1 ATATTTAGATATTACTTTTTTA
* *
92032847 A-ATTTTAAATATTATTTTTTTA
1 ATA-TTTAGATATTACTTTTTTA
92032869 ATATTTAGATATT
1 ATATTTAGATATT
92032882 TTAAACTTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (22 bp):
ATATTTAGATATTACTTTTTTA
Found at i:92032921 original size:28 final size:31
Alignment explanation
Indices: 92032889--92032946 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
92032879 ATTTTAAACT
92032889 TTCAAAT-TTA-TT-ATTAGTTTTATAATAA
1 TTCAAATATTATTTAATTAGTTTTATAATAA
*
92032917 TTCAAATATTATTTAATTTGTTTTATAATA
1 TTCAAATATTATTTAATTAGTTTTATAATA
92032947 TTGTAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 7 0.27
29 3 0.12
30 2 0.08
31 14 0.54
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55
Consensus pattern (31 bp):
TTCAAATATTATTTAATTAGTTTTATAATAA
Found at i:92033770 original size:22 final size:22
Alignment explanation
Indices: 92033743--92033797 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
92033733 GAAAGTTTAA
92033743 AATATTTAAACA-TTAAAAAAAT
1 AATATTTAAA-ATTTAAAAAAAT
92033765 AATATTTAAAATTTAAAAAAAT
1 AATATTTAAAATTTAAAAAAAT
*
92033787 AAT-TTCAAAAT
1 AATATTTAAAAT
92033798 ATATATTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
21 8 0.26
22 23 0.74
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (22 bp):
AATATTTAAAATTTAAAAAAAT
Found at i:92033826 original size:24 final size:26
Alignment explanation
Indices: 92033777--92033828 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 26
92033767 TATTTAAAAT
92033777 TTAAAAAAATAATTTCAAAATATATA
1 TTAAAAAAATAATTTCAAAATATATA
*
92033803 TTAATAAAAT-ATTTC-AAATATATA
1 TTAAAAAAATAATTTCAAAATATATA
92033827 TT
1 TT
92033829 TCAAAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 11 0.44
25 5 0.20
26 9 0.36
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (26 bp):
TTAAAAAAATAATTTCAAAATATATA
Found at i:92034192 original size:29 final size:30
Alignment explanation
Indices: 92034159--92034222 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
92034149 ATTTTGAGTG
* *
92034159 ATTTTAGTATTTAATTAAAAA-AATGGGTC
1 ATTTTAGTACTTAATTAAAAATAAAGGGTC
*
92034188 ATTTTAGTACTTAATTAAAAATAAAGGGTT
1 ATTTTAGTACTTAATTAAAAATAAAGGGTC
92034218 ATTTT
1 ATTTT
92034223 GATAAAAAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 20 0.65
30 11 0.35
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (30 bp):
ATTTTAGTACTTAATTAAAAATAAAGGGTC
Found at i:92037111 original size:7 final size:7
Alignment explanation
Indices: 92037101--92037139 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
92037091 TTATCTGATC
*
92037101 AGTGATA
1 AGTGACA
92037108 AGTGACA
1 AGTGACA
*
92037115 AGCGACA
1 AGTGACA
92037122 AGTGACA
1 AGTGACA
*
92037129 AGTGATA
1 AGTGACA
92037136 AGTG
1 AGTG
92037140 GTAGCTTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.41, C:0.10, G:0.31, T:0.18
Consensus pattern (7 bp):
AGTGACA
Found at i:92037138 original size:14 final size:14
Alignment explanation
Indices: 92037101--92037139 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
92037091 TTATCTGATC
92037101 AGTGATAAGTGACA
1 AGTGATAAGTGACA
* *
92037115 AGCGACAAGTGACA
1 AGTGATAAGTGACA
92037129 AGTGATAAGTG
1 AGTGATAAGTG
92037140 GTAGCTTTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.41, C:0.10, G:0.31, T:0.18
Consensus pattern (14 bp):
AGTGATAAGTGACA
Found at i:92037190 original size:65 final size:65
Alignment explanation
Indices: 92037052--92037190 Score: 206
Period size: 65 Copynumber: 2.1 Consensus size: 65
92037042 TGAGTACTTC
* *
92037052 TGATCAGTGACAAGTGATAAGTGGTAGCCTCAACTACACTTATCTGATCAGTGATAAGTGACAAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCCTCAACTACACTTATCTGATCAGTGACAAGTGACAAG
* * * * * *
92037117 CGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCCTCAACTACACTTATCTGATCAGTGACAAGTGACAAG
92037182 TGATAAGTG
1 TGATAAGTG
92037191 GTAGTTTTAG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (65 bp):
TGATAAGTGACAAGTGATAAGTGGTAGCCTCAACTACACTTATCTGATCAGTGACAAGTGACAAG
Found at i:92037194 original size:51 final size:51
Alignment explanation
Indices: 92037118--92037231 Score: 210
Period size: 51 Copynumber: 2.2 Consensus size: 51
92037108 AGTGACAAGC
*
92037118 GACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
*
92037169 GACAAGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
92037220 GACAAGTGATAA
1 GACAAGTGATAA
92037232 ATGTGATCAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (51 bp):
GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
Done.