Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 313 of 335
Found at i:92464803 original size:42 final size:42
Alignment explanation
Indices: 92464718--92464908 Score: 177
Period size: 42 Copynumber: 4.5 Consensus size: 42
92464708 ACATTAAGTG
* * * * *
92464718 TAAGGCCATATCTAGGATACGGCATC-GTATGACATTTCGTA
1 TAAGACCATATCTGGGATATGGCATCAATATGAGATTTCGTA
* * *
92464759 TAAGACCATATTTGGGATATGACATCAATTTGAGATTTCGTA
1 TAAGACCATATCTGGGATATGGCATCAATATGAGATTTCGTA
* * * * *
92464801 TAAGACTATGTCTGGGACATGGCATCAATATGAGACTTCGTG
1 TAAGACCATATCTGGGATATGGCATCAATATGAGATTTCGTA
* * * * * *
92464843 TAAGACCATAGCTGGGCTATTGGCATCAAAATGAGATTCCATG
1 TAAGACCATATCTGGGATA-TGGCATCAATATGAGATTTCGTA
* *
92464886 TAAGACCATGTTTGGGATATGGC
1 TAAGACCATATCTGGGATATGGC
92464909 GTTGGTATGA
Statistics
Matches: 119, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
41 21 0.18
42 64 0.54
43 34 0.29
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCAATATGAGATTTCGTA
Found at i:92465082 original size:16 final size:17
Alignment explanation
Indices: 92465061--92465092 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
92465051 AAGCATTGGC
92465061 TTCATGAT-ATTATGAG
1 TTCATGATCATTATGAG
92465077 TTCATGATCATTATGA
1 TTCATGATCATTATGA
92465093 ATGTGACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (17 bp):
TTCATGATCATTATGAG
Found at i:92465995 original size:24 final size:24
Alignment explanation
Indices: 92465967--92466018 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
92465957 TTTCTAGAAG
* *
92465967 ATTTAATATTTATGAGTATAATAT
1 ATTTAACATTTATGAGCATAATAT
* * *
92465991 ATTTAGCATTTATTAGCATGATAT
1 ATTTAACATTTATGAGCATAATAT
92466015 ATTT
1 ATTT
92466019 GAATTTGATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAACATTTATGAGCATAATAT
Found at i:92466187 original size:5 final size:6
Alignment explanation
Indices: 92466168--92466203 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
92466158 CTGTGTGTTC
92466168 TTTATT TTTATT TTTATT TTTA-T TTTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
92466204 CACAAATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 10 0.34
6 19 0.66
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:92470373 original size:24 final size:24
Alignment explanation
Indices: 92470341--92470392 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
92470331 TTTCTAGAAG
*
92470341 ATTTAGCATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
* *
92470365 ATTTAGCATTTATTAGCATGATAT
1 ATTTAGCATTTATGAGCATAATAT
92470389 ATTT
1 ATTT
92470393 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:92476498 original size:136 final size:137
Alignment explanation
Indices: 92476265--92476538 Score: 478
Period size: 136 Copynumber: 2.0 Consensus size: 137
92476255 GCCCATTCAA
92476265 GTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTC
1 GTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTC
*
92476330 AGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
66 AGATAACAATATGACCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
92476395 CATTTGG
131 CATTTGG
* * *
92476402 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCA-ATTATAATAAACTGGGCCTTAGCCCCTTATTC
1 GTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTC
* * *
92476466 AGATAACAGTATGACCCATAGGCCCATTTCAAAATACATGTAACATCAGTAAACATATGCAAGCC
66 AGATAACAATATGACCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
92476531 CATTTGG
131 CATTTGG
92476538 G
1 G
92476539 GAGACTACTC
Statistics
Matches: 130, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
136 99 0.76
137 31 0.24
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (137 bp):
GTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTC
AGATAACAATATGACCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
CATTTGG
Found at i:92476825 original size:25 final size:27
Alignment explanation
Indices: 92476784--92476838 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
92476774 AGTCAAACAT
92476784 GTATTTAGGTCAATTTAAC-CCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
* *
92476810 GTATTTCGGT-AATTTATCTCCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
92476836 GTA
1 GTA
92476839 AAACTGTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (27 bp):
GTATTTAGGTCAATTTAACTCCTAGGG
Found at i:92478361 original size:26 final size:26
Alignment explanation
Indices: 92478325--92478408 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
92478315 CATGAAATTC
92478325 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
92478351 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
92478377 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
92478403 TTATCA
1 TTATCA
92478409 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:92481380 original size:10 final size:10
Alignment explanation
Indices: 92481349--92481373 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92481339 AATTTCATCA
92481349 CTGTCATTTG
1 CTGTCATTTG
92481359 CTGTCATTTG
1 CTGTCATTTG
92481369 CTGTC
1 CTGTC
92481374 CATTGCTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.24, G:0.20, T:0.48
Consensus pattern (10 bp):
CTGTCATTTG
Found at i:92481867 original size:3 final size:3
Alignment explanation
Indices: 92481859--92481910 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
92481849 TGGACATTGA
92481859 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
92481907 -TT AT
1 ATT AT
92481911 ATTTTGATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:92483761 original size:23 final size:23
Alignment explanation
Indices: 92483722--92483766 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
92483712 TTTTGACATT
** *
92483722 AAAATAAATTAGTTTTTTAAAAC
1 AAAATAAATTAAATTTTAAAAAC
92483745 AAAATAAATTAAATTTTAAAAA
1 AAAATAAATTAAATTTTAAAAA
92483767 TATATAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
AAAATAAATTAAATTTTAAAAAC
Found at i:92485758 original size:13 final size:13
Alignment explanation
Indices: 92485740--92485765 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92485730 CAAATCGCTA
92485740 TTATACAAATAAT
1 TTATACAAATAAT
92485753 TTATACAAATAAT
1 TTATACAAATAAT
92485766 GCTTGAATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
TTATACAAATAAT
Found at i:92494529 original size:30 final size:30
Alignment explanation
Indices: 92494467--92494529 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
92494457 TTATAGCCTA
* * * *
92494467 ATTTGCATGCTAGAATCATGTTATAATCAG
1 ATTTACATGCTAGAATCAAGCTAGAATCAG
*
92494497 ATTTACATGCTAGAATCAAGCTAGAATTAG
1 ATTTACATGCTAGAATCAAGCTAGAATCAG
92494527 ATT
1 ATT
92494530 AATACAGATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (30 bp):
ATTTACATGCTAGAATCAAGCTAGAATCAG
Found at i:92495886 original size:20 final size:20
Alignment explanation
Indices: 92495858--92495896 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
92495848 ACATTTATAT
* *
92495858 AATATATTTAAAATTATTTA
1 AATAAATTTAAAAATATTTA
92495878 AATAAATTTAAAAATATTT
1 AATAAATTTAAAAATATTT
92495897 TGAAATTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATAAATTTAAAAATATTTA
Found at i:92498955 original size:17 final size:18
Alignment explanation
Indices: 92498935--92498969 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
92498925 AGGTTTAGGT
92498935 TTAAAAA-TTTTAATTAA
1 TTAAAAATTTTTAATTAA
92498952 TTAAAAATTTTTAATTAA
1 TTAAAAATTTTTAATTAA
92498970 AAATCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAAAATTTTTAATTAA
Found at i:92508229 original size:43 final size:43
Alignment explanation
Indices: 92508082--92508978 Score: 397
Period size: 43 Copynumber: 20.7 Consensus size: 43
92508072 GAAGATTTAC
* * * *
92508082 AGATCTTAATCCTCTAAGCAGTAGGGAAACAAATCGAAGACGA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* * * * * * * *
92508125 AGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGC
1 A-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* *
92508168 AGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* *
92508211 AGATCTTAACCCCTTAAGCAGTAGGGAAACAGATCAAAGATGA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* ** * * * *
92508254 TGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTA
1 AGATC-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA
* * * * * *
92508297 TA-AGCTTTAACCCCCTGAGCAGTAAGGTAACAG-GCTGAAGATTTA
1 -AGATC-TTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA
*
92508342 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* * * * * * * *
92508386 AGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGC
1 A-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* *
92508429 AGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
*
92508472 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* ** * * * *
92508515 TGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGC-TAGATTTA
1 AGATC-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA
* * * * * * * * *
92508558 CAGACCTTAACCCCCTAGGTAGTAGGGTAATAGGTTGAAAATTA
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* * * * * *
92508602 CAGATCTT-GCCTCCTCGAATGCAGT---GAAGCAGATTCAAACCATCA
1 -AGATCTTAACC-CC-CTAA-GCAGTAGGGAAACAGA-TCGAA-GATGA
* * * * * * *
92508647 AGCT-TTAACCCCCTAAGCAGAAGGGTAACA-AGCTGATGTTCA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATGA
* * * *
92508689 TAGGGTCTTAAACCCCTAAGCAGTAGGGAAACAGA-CCAA-ATTGC
1 -A-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA
* * ** *
92508733 AGATCTTATCTCCCTAAGCAGTAGTGG-AGTAGATCGAAGACGA
1 AGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGATGA
* * * * * * *
92508776 AGAACCTTAAACCCCTAAGCAGTAGGGTAATAGGT-TAA-ATTGC
1 AG-ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA
* * * * *
92508819 AGATCTTATCTCCCTAAGCAGTAATGG-AGCAGATCGAAGACGA
1 AGATCTTAACCCCCTAAGCAGT-AGGGAAACAGATCGAAGATGA
* * * * *
92508862 AGAACCTTAAACCCC-AAGCAGTAGGGTAACAGGTTG-AGTAT-A
1 AG-ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAG-ATGA
** * *
92508904 CAGATC-TAAAACCCTAGGCAGTAGGGAAACA-ATCAAAGATGA
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* * * *
92508946 CA-AGCCTTAATCCCTTAAGCAGTAGGGTAACAG
1 -AGA-TCTTAACCCCCTAAGCAGTAGGGAAACAG
92508979 GCTGAAAATT
Statistics
Matches: 633, Mismatches: 170, Indels: 101
0.70 0.19 0.11
Matches are distributed among these distances:
41 15 0.02
42 141 0.22
43 228 0.36
44 175 0.28
45 66 0.10
46 8 0.01
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (43 bp):
AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
Found at i:92508285 original size:129 final size:129
Alignment explanation
Indices: 92508082--92508546 Score: 580
Period size: 129 Copynumber: 3.6 Consensus size: 129
92508072 GAAGATTTAC
* * * * * *
92508082 AGATCTTAATCCTCTAAGCAGTAGGGAAACAAATCGAAGACGAAGGGTCTTAAACCCCTAATCGG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGGTCTTAAACCCCTAAGCAG
92508147 TAGGGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
66 TAGGGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* * * *
92508211 AGATCTTAACCCCTTAAGCAGTAGGGAAACAGATCAAAGATGATGGG-CTTTAACCCCCTAAGCA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGGTC-TTAAACCCCTAAGCA
* * * * * * * * * *
92508275 GTAGGGTAACA-AGCCAAATT-TATAAGCTTTAACCCCCTGAGCAGTAAGGTAACAG-GCTGAAG
65 GTAGGGTAACAGA-CCGAATTGCA-GATC-TTATCTCCCTAAGCAGTAGGGAAACAGATC-GAAG
*
92508337 ATTTA
126 A-TGA
* * *
92508342 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCG
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGGTCTTAAACCCCTAAGCA
92508407 GTAGGGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
65 GTAGGGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* * *
92508472 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGG-CTTTAACCCCCTAAGCA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGGTC-TTAAACCCCTAAGCA
92508536 GTAGGGTAACA
65 GTAGGGTAACA
92508547 AGCTAGATTT
Statistics
Matches: 279, Mismatches: 45, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
128 4 0.01
129 139 0.50
130 29 0.10
131 29 0.10
132 75 0.27
133 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (129 bp):
AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGGTCTTAAACCCCTAAGCAG
TAGGGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
Found at i:92508506 original size:261 final size:261
Alignment explanation
Indices: 92508030--92508609 Score: 970
Period size: 261 Copynumber: 2.2 Consensus size: 261
92508020 AGAATCAGTG
* * *
92508030 AATTCATAAGCCTTAACCCCCTGAGCAGT-AGGATAGCAGGCTGAAGATTTACAGATCTTAATCC
1 AATTTATAAGCCTTAACCCCCTGAGCAGTAAGG-TAACAGGCTGAAGATTTACAGATCTTAACCC
*
92508094 TCTAAGCAGTAGGGAAACAAATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGA
65 CCTAAGCAGTAGGGAAACAAATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGA
92508159 CCGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCC
130 CCGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCC
*
92508224 TTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGC
195 CTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGC
92508289 CA
260 CA
*
92508291 AATTTATAAGCTTTAACCCCCTGAGCAGTAAGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTATAAGCCTTAACCCCCTGAGCAGTAAGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
*
92508356 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
66 CTAAGCAGTAGGGAAACAAATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
92508421 CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
131 CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
*
92508486 TAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCT
196 TAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
92508551 A
261 A
* * * * * * *
92508552 GATTTA-CAGACCTTAACCCCCT-AGGTAGTAGGGTAATAGGTTGAA-AATTACAGATCTT
1 AATTTATAAG-CCTTAACCCCCTGA-GCAGTAAGGTAACAGGCTGAAGATTTACAGATCTT
92508610 GCCTCCTCGA
Statistics
Matches: 300, Mismatches: 16, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
260 15 0.05
261 282 0.94
262 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (261 bp):
AATTTATAAGCCTTAACCCCCTGAGCAGTAAGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
CTAAGCAGTAGGGAAACAAATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
TAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
A
Found at i:92508739 original size:261 final size:259
Alignment explanation
Indices: 92508037--92508805 Score: 794
Period size: 261 Copynumber: 2.9 Consensus size: 259
92508027 GTGAATTCAT
* * * * *
92508037 AAGCCTTAACCCCCTGAGCAGT-AGGATAGCAGGCTGAAGATTTACAGATCTTAATCCTCTAAGC
1 AAGCCTTAACCCCCTGAGCAGTAAGG-TAACAGGCTGAAGAATTACAGATCTTAACCCCCGAAGC
* * * * * * *
92508101 AGTAGGGAAACAAATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATT
65 AGT--GGAAACAGATCGAAGACCAAAGCTCTTAAACCCCTAAGCAGAAGGGTAACAGACCGAATT
* *
92508166 GCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCTTAAGCA
128 GCAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCA
92508231 GTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTT
193 GTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTT
*
92508296 AT
258 AC
* * *
92508298 AAGCTTTAACCCCCTGAGCAGTAAGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCA
1 AAGCCTTAACCCCCTGAGCAGTAAGGTAACAGGCTGAAGAATTACAGATCTTAACCCCCGAAGCA
* * * * * *
92508363 GTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTG
66 GT--GGAAACAGATCGAAGACCAAAGCTCTTAAACCCCTAAGCAGAAGGGTAACAGACCGAATTG
*
92508428 CAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAG
129 CAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAG
* *
92508493 TAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTAGATTTA
194 TAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTA
92508558 C
259 C
* * * * *
92508559 -AGACCTTAACCCCCT-AGGTAGTAGGGTAATAGGTTGAA-AATTACAGATCTT-GCCTCCTCGA
1 AAG-CCTTAACCCCCTGA-GCAGTAAGGTAACAGGCTGAAGAATTACAGATCTTAACC-CC-CGA
* *
92508620 ATGCAGT-GAAGCAGATTC-AA-ACCATCAAGCT-TTAACCCCCTAAGCAGAAGGGTAACA-AGC
62 A-GCAGTGGAAACAGA-TCGAAGACCA--AAGCTCTTAAACCCCTAAGCAGAAGGGTAACAGA-C
* * * * *
92508680 TG-ATGTTCATAGGGTCTTAAAC-CCCTAAGCAGTAGGGAAACAGA-CCAA-ATTGCAGATCTTA
122 CGAAT-TGC--A-GATCTT-AACTCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGAAGATCTTA
* * ** * * * ** * *
92508741 TCTCCCTAAGCAGTAGTGG-AGTAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGGGTA
181 ACCCCCTAAGCAGTAG-GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTA
92508805 A
245 A
92508806 TAGGTTAAAT
Statistics
Matches: 449, Mismatches: 42, Indels: 34
0.86 0.08 0.06
Matches are distributed among these distances:
258 6 0.01
259 37 0.08
260 23 0.05
261 344 0.77
262 37 0.08
263 2 0.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (259 bp):
AAGCCTTAACCCCCTGAGCAGTAAGGTAACAGGCTGAAGAATTACAGATCTTAACCCCCGAAGCA
GTGGAAACAGATCGAAGACCAAAGCTCTTAAACCCCTAAGCAGAAGGGTAACAGACCGAATTGCA
GATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGTA
GGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTAC
Found at i:92514650 original size:18 final size:18
Alignment explanation
Indices: 92514619--92514662 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
92514609 TATTACATTA
92514619 TTATTATTTTCTTTCTA-T
1 TTATT-TTTTCTTTCTATT
*
92514637 TTATTTTTTCCTTTTTATT
1 TTATTTTTT-CTTTCTATT
92514656 TTATTTT
1 TTATTTT
92514663 CGAATTTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 11 0.48
19 8 0.35
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (18 bp):
TTATTTTTTCTTTCTATT
Found at i:92515394 original size:12 final size:12
Alignment explanation
Indices: 92515379--92515428 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
92515369 TATTTATCTC
92515379 TTTATATTTATG
1 TTTATATTTATG
92515391 TTTATATTTTATG
1 TTTATA-TTTATG
** *
92515404 TATTATACCTATC
1 T-TTATATTTATG
92515417 TTTATATTTATG
1 TTTATATTTATG
92515429 CATGAACATT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
12 14 0.47
13 11 0.37
14 5 0.17
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (12 bp):
TTTATATTTATG
Found at i:92515605 original size:22 final size:22
Alignment explanation
Indices: 92515577--92515618 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
92515567 TAACGTGCTA
* *
92515577 TTATTACTATTATTTTTATTTT
1 TTATTACCATTATTGTTATTTT
92515599 TTATTACCATTATTGTTATT
1 TTATTACCATTATTGTTATT
92515619 GTACTTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (22 bp):
TTATTACCATTATTGTTATTTT
Found at i:92518864 original size:327 final size:327
Alignment explanation
Indices: 92518267--92519248 Score: 1883
Period size: 327 Copynumber: 3.0 Consensus size: 327
92518257 TGTTCTCTAG
*
92518267 GCCGATTGAACCTACAGGATTGGGAAAAGCAGAGGTAAGAGCCATAAAAATAGTCGTGGAGATGT
1 GCCGATTGAAGCTACAGGATTGGGAAAAGCAGAGGTAAGAGCCATAAAAATAGTCGTGGAGATGT
92518332 TTATGAGTATAGGTTGGCATGAAAAAGTTCCTCTAGTTATTGAGTCTAGCTTGAGTGTTGTTCTG
66 TTATGAGTATAGGTTGGCATGAAAAAGTTCCTCTAGTTATTGAGTCTAGCTTGAGTGTTGTTCTG
*
92518397 GAGGGGTTGTTGGATAAGAGCTATAGACCATGGATGTTGCGGAATCTATTCATTGGTATCGGTTG
131 GAGGGGTTGTTGGATAGGAGCTATAGACCATGGATGTTGCGGAATCTATTCATTGGTATCGGTTG
* *
92518462 TGATATTAATCTATTGTTGCGTGCTCAATTCATAATTATTCAATGACAAGGTAATATTGTAGCTA
196 TGATATTAATCTATTGTTGCGTGCTCAATTCACAATTATTCAATGACAAGGTAATATTATAGCTA
92518527 ATGCTCCGACAAAAGTAGGTATAAGGAGACCTTTGCTATTTAAAGTCTGATGGTGATTATTGTGA
261 ATGCTCCGACAAAAGTAGGTATAAGGAGACCTTTGCTATTTAAAGTCTGATGGTGATTATTGTGA
92518592 TT
326 TT
*
92518594 GCGGATTGAAGCTACAGGATTGGGAAAAGCAGAGGTAAGAGCCATAAAAATAGTCGTGGAGATGT
1 GCCGATTGAAGCTACAGGATTGGGAAAAGCAGAGGTAAGAGCCATAAAAATAGTCGTGGAGATGT
* *
92518659 TTATGAGTATAGGTTGGCATGAAAAAGTACCTCTAGTTATTGAGTCTAGCTCGAGTGTTGTTCTG
66 TTATGAGTATAGGTTGGCATGAAAAAGTTCCTCTAGTTATTGAGTCTAGCTTGAGTGTTGTTCTG
92518724 GAGGGGTTGTTGGATAGGAGCTATAGACCATGGATGTTGCGGAATCTATTCATTGGTATCGGTTG
131 GAGGGGTTGTTGGATAGGAGCTATAGACCATGGATGTTGCGGAATCTATTCATTGGTATCGGTTG
*
92518789 TGATATTAATCTATTGTTACGTGCTCAATTCACAATTATTCAATGACAAGGTAATATTATAGCTA
196 TGATATTAATCTATTGTTGCGTGCTCAATTCACAATTATTCAATGACAAGGTAATATTATAGCTA
92518854 ATGCTCCGACAAAAGTAGGTATAAGGAGACCTTTGCTATTTAAAGTCTGATGGTGATTATTGTGA
261 ATGCTCCGACAAAAGTAGGTATAAGGAGACCTTTGCTATTTAAAGTCTGATGGTGATTATTGTGA
92518919 TT
326 TT
92518921 GCCGATTGAAGCTACAGGATTGGGAAAAGCAGAGGTAAGAGCCATAAAAATAGTCGTGGAGATGT
1 GCCGATTGAAGCTACAGGATTGGGAAAAGCAGAGGTAAGAGCCATAAAAATAGTCGTGGAGATGT
92518986 TTATGAGTATAGGTTGGCATGAAAAAGTTCCTCTAGTTATTGAGTCTAGCTTGAGTGTTGTTCTG
66 TTATGAGTATAGGTTGGCATGAAAAAGTTCCTCTAGTTATTGAGTCTAGCTTGAGTGTTGTTCTG
*
92519051 GAGGGGTTGTTGGATAGGAGCTATAGACCATGGATGTTGTGGAATCTATTCATTGGTATCGGTTG
131 GAGGGGTTGTTGGATAGGAGCTATAGACCATGGATGTTGCGGAATCTATTCATTGGTATCGGTTG
92519116 TGATATTAATCTATTGTTGCGTGCTCAATTCACAATTATTCAATGACAAGGTAATATTATAGCTA
196 TGATATTAATCTATTGTTGCGTGCTCAATTCACAATTATTCAATGACAAGGTAATATTATAGCTA
92519181 ATGCTCCGACAAAAGTAGGTATAAGGAGACCTTTGCTATTTAAAGTCTGATGGTGATTATTGTGA
261 ATGCTCCGACAAAAGTAGGTATAAGGAGACCTTTGCTATTTAAAGTCTGATGGTGATTATTGTGA
92519246 TT
326 TT
92519248 G
1 G
92519249 TTTGAATTGT
Statistics
Matches: 642, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
327 642 1.00
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (327 bp):
GCCGATTGAAGCTACAGGATTGGGAAAAGCAGAGGTAAGAGCCATAAAAATAGTCGTGGAGATGT
TTATGAGTATAGGTTGGCATGAAAAAGTTCCTCTAGTTATTGAGTCTAGCTTGAGTGTTGTTCTG
GAGGGGTTGTTGGATAGGAGCTATAGACCATGGATGTTGCGGAATCTATTCATTGGTATCGGTTG
TGATATTAATCTATTGTTGCGTGCTCAATTCACAATTATTCAATGACAAGGTAATATTATAGCTA
ATGCTCCGACAAAAGTAGGTATAAGGAGACCTTTGCTATTTAAAGTCTGATGGTGATTATTGTGA
TT
Found at i:92523014 original size:45 final size:45
Alignment explanation
Indices: 92522965--92523076 Score: 163
Period size: 45 Copynumber: 2.5 Consensus size: 45
92522955 CTCGGTCAGT
*
92522965 TCCACTGC-GACCTCAGGGAGACAAGACTTGCAACTTTTGATCGGC
1 TCCACTGCAG-CCTCAGGGAGACAAGACTTGCAACTTTTGACCGGC
* *
92523010 TCCACTGCAGCTTCAGGGGGACAAGACTTGCAACTTTTGACCGGC
1 TCCACTGCAGCCTCAGGGAGACAAGACTTGCAACTTTTGACCGGC
* *
92523055 TCCACTGTAGCTTCAGGGAGAC
1 TCCACTGCAGCCTCAGGGAGAC
92523077 CAAGTCTGGT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 60 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (45 bp):
TCCACTGCAGCCTCAGGGAGACAAGACTTGCAACTTTTGACCGGC
Found at i:92523427 original size:55 final size:54
Alignment explanation
Indices: 92523309--92523523 Score: 279
Period size: 55 Copynumber: 3.9 Consensus size: 54
92523299 ATATGACCCG
* * * * *
92523309 AGGCTCAACTCACTTCTCGCCATATGGGTTGATTTTTGAAAGACAAAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
* * *
92523363 AGG-TACAACTAACCTCTCTCAATATGAGTTGCTTTTTGAAAAAACAGAAATTAAA
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAACAGAAATTAAA
* * *
92523418 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAA
* *
92523473 AGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAAAACAGGAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
92523524 GGAAAATAGA
Statistics
Matches: 139, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 46 0.33
55 85 0.61
56 7 0.05
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
Found at i:92523642 original size:88 final size:87
Alignment explanation
Indices: 92523473--92523683 Score: 309
Period size: 88 Copynumber: 2.4 Consensus size: 87
92523463 ATAAATTGAA
* * *
92523473 AGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAAAACAGGAATTGGAAAATAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCAAAAACAGGAATTGGAAAACAGAAATT
*
92523538 GAAAATACCTCAGCGTGCCCCG
66 GAAAATACCTCAGCGTGACCCG
*
92523560 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTCAAAAACA-TAATAAT-GAAAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTCAAAAACAGGAAT--TGGAAAACAGAA
* *
92523623 ATTGAAAATACCTCGGCGTGACCTG
63 ATTGAAAATACCTCAGCGTGACCCG
*
92523648 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
92523684 GAAAAAGTAG
Statistics
Matches: 113, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
87 38 0.34
88 74 0.65
89 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.25
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCAAAAACAGGAATTGGAAAACAGAAATT
GAAAATACCTCAGCGTGACCCG
Found at i:92523776 original size:55 final size:54
Alignment explanation
Indices: 92523648--92523788 Score: 203
Period size: 55 Copynumber: 2.6 Consensus size: 54
92523638 GCGTGACCTG
*
92523648 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAA
* * * *
92523702 AGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA-TATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAAAAGTAGAAATTAAA
*
92523757 AGGCTCAACTCACCTCTCGCAATACGAGTTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA
92523789 AATTAAAACA
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
54 29 0.38
55 38 0.49
56 10 0.13
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAA
Found at i:92523985 original size:122 final size:126
Alignment explanation
Indices: 92523706--92523992 Score: 366
Period size: 122 Copynumber: 2.3 Consensus size: 126
92523696 ATTAAAAGGT
* * * *
92523706 TCAACCCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAAAGGCTCAACTCACC
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAAAAATTAAAAGGCTCAACTCACC
* * *
92523771 TCTCGCAATACGAGTTGAAATTAAAACACAAAAAATTGAAAATACCTCAGCATGCCCCGAGGC
65 TCTCACAATACGAGTT-AAATTAAAACACAAAAAATAGAAAATACCCCAGCATGCCCCGAGGC
* *
92523834 TCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTCAACTCACCT
* * * * * * *
92523898 CTCACAATATGGGTT-AATTTAAA-ACATAAACTAG-AAATACCCCGGCGTGCCCCGAGGC
66 CTCACAATACGAGTTAAATTAAAACACAAAAAATAGAAAATACCCCAGCATGCCCCGAGGC
* *
92523956 TCAACTCACCCCTCGCAATATGAGCTGATTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
92523993 CAAAAGGAAT
Statistics
Matches: 139, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
122 46 0.33
123 16 0.12
124 7 0.05
126 44 0.32
128 26 0.19
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (126 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTCAACTCACCT
CTCACAATACGAGTTAAATTAAAACACAAAAAATAGAAAATACCCCAGCATGCCCCGAGGC
Found at i:92524206 original size:146 final size:144
Alignment explanation
Indices: 92523883--92524233 Score: 345
Period size: 146 Copynumber: 2.4 Consensus size: 144
92523873 AAAAATTAAA
* * * * *
92523883 AGGCTTAACTCACCTCTCACAATATGGGTTAA--TTTAAAACATAAACTAGAAATACC-CCGGCG
1 AGGCTCAACTCACCTCTCACAATATGAGTCAATTTTTAAAACATAAACTAAAAATACCTCAGGCG
* * *
92523945 TGCCCCGAGGCTCAACTCACCCCTCGCAATATGAGCTGATTTTTGAAACAAAAGGAATTAAAATA
66 TGACCCGAGGCTCAACTCACCCCTCGCAATATGAGCTAATTTTTGAAACAAAA-GAATAAAAATA
92524010 CCTCAACGTGACCTG
130 CCTCAACGTGACCTG
** * * * *
92524025 AGGCTTGACTCACCTCTCGCACTATGAGTCAATTTTTAAAACATAAACTAAAAACACCTCAGCGT
1 AGGCTCAACTCACCTCTCACAATATGAGTCAATTTTTAAAACATAAACTAAAAATACCTCAG-GC
* ** * *
92524090 GTGACCTGAGGCTTGACTCACCTCTCGCAATATGAG-TCAATTTTTTGAAAC-ATA-AATAAAAA
65 GTGACCCGAGGCTCAACTCACCCCTCGCAATATGAGCT-AA-TTTTTGAAACAAAAGAATAAAAA
*
92524152 TACCTCAGCGTGTGACCTG
128 TACCTCAAC--GTGACCTG
** * ** * * *
92524171 AGGCTCAACTCATTTCTCATAATATGAGTTGATTTTTGAAAACATGAATTAAAGATACCTCAG
1 AGGCTCAACTCACCTCTCACAATATGAGTCAATTTTT-AAAACATAAACTAAAAATACCTCAG
92524234 AGTACCCAAA
Statistics
Matches: 169, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
142 27 0.16
144 37 0.22
145 3 0.02
146 71 0.42
147 31 0.18
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (144 bp):
AGGCTCAACTCACCTCTCACAATATGAGTCAATTTTTAAAACATAAACTAAAAATACCTCAGGCG
TGACCCGAGGCTCAACTCACCCCTCGCAATATGAGCTAATTTTTGAAACAAAAGAATAAAAATAC
CTCAACGTGACCTG
Found at i:92524214 original size:73 final size:72
Alignment explanation
Indices: 92523883--92524233 Score: 302
Period size: 73 Copynumber: 4.8 Consensus size: 72
92523873 AAAAATTAAA
* * * * * * * *
92523883 AGGCTTAACTCACCTCTCACAATATGGGTTAA--TTTAAAACATAAACTAGAAATACC-CCG-GC
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAAA-TAAAAATACCTCAGCGT
* *
92523944 GTGCCCCG
65 GTGACCTG
** * * * * *
92523952 AGGCTCAACTCACCCCTCGCAATATGAG-CTGATTTTTGAAACAAAAGGAATTAAAATACCTCAA
1 AGGCTTGACTCACCTCTCGCAATATGAGTC-AATTTTTGAAAC-ATA--AATAAAAATACCTCAG
92524016 C--GTGACCTG
62 CGTGTGACCTG
* * *
92524025 AGGCTTGACTCACCTCTCGCACTATGAGTCAATTTTTAAAACATAAACTAAAAACACCTCAGCGT
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAAA-TAAAAATACCTCAGCGT
92524090 GTGACCTG
65 GTGACCTG
92524098 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTTGAAACATAAATAAAAATACCTCAGCGT
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAA-TTTTTGAAACATAAATAAAAATACCTCAGCGT
92524163 GTGACCTG
65 GTGACCTG
** ** ** ** * *
92524171 AGGCTCAACTCATTTCTCATAATATGAGTTGATTTTTGAAAACATGAATTAAAGATACCTCAG
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTG-AAACAT-AAATAAAAATACCTCAG
92524234 AGTACCCAAA
Statistics
Matches: 230, Mismatches: 37, Indels: 25
0.79 0.13 0.09
Matches are distributed among these distances:
69 25 0.11
70 2 0.01
71 19 0.08
72 10 0.04
73 141 0.61
74 33 0.14
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (72 bp):
AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAAATAAAAATACCTCAGCGTG
TGACCTG
Found at i:92532756 original size:12 final size:12
Alignment explanation
Indices: 92532739--92532774 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
92532729 AACATTTTGA
92532739 CATTCATGCATT
1 CATTCATGCATT
92532751 CATTCATGCATT
1 CATTCATGCATT
*
92532763 CATTCATACATT
1 CATTCATGCATT
92532775 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:92541212 original size:75 final size:76
Alignment explanation
Indices: 92541018--92541702 Score: 571
Period size: 78 Copynumber: 8.9 Consensus size: 76
92541008 GTTTTATTTC
* * *
92541018 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTC
92541083 TG-TTGTCAAAAAA
66 TGTTTGTC---AAA
* * * *
92541096 AAAAATCAACTCGTATTGCGAGCGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTC
*
92541161 TGTTTTTC-AA
66 TGTTTGTCAAA
* * * *
92541171 AAAAATCAGCTCATATTGCGAGAGATGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTC
*
92541234 TGTTCT-TTAATTTCTGTGTTTCA
66 TGTT-TGTCAA------------A
* ** *
92541257 AAAAATCAACTCATATTGCGA-ATGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAGA-GGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTT
92541321 CTGTTT-TC---
65 CTGTTTGTCAAA
* ** * *
92541329 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTC
92541394 TGTTT-TCAAAAAAAA
66 TGTTTGTC-----AAA
* * * *
92541409 AAAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-AGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG---ACACGCTGAGGTATTTTCAAT
92541473 TTCTGTCTT-TC-AA
63 TTCTGT-TTGTCAAA
* * * * **
92541486 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTT-TTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-A-GACACGCTGAGGTATTTTCAATT
* * ***
92541550 TCAAGTTAAGT-TTC
64 TC-TGTT-TGTCAAA
* *
92541564 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTC
**
92541629 TGTTT-TTTAA
66 TGTTTGTCAAA
* * *
92541639 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTC
92541702 T
66 T
92541703 ATTCTTTAAT
Statistics
Matches: 500, Mismatches: 67, Indels: 85
0.77 0.10 0.13
Matches are distributed among these distances:
72 63 0.13
73 45 0.09
74 3 0.01
75 78 0.16
76 23 0.05
77 59 0.12
78 99 0.20
79 7 0.01
80 33 0.07
82 25 0.05
83 4 0.01
85 1 0.00
86 35 0.07
87 2 0.00
88 23 0.05
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (76 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTTTGTCAAA
Found at i:92541361 original size:72 final size:74
Alignment explanation
Indices: 92541242--92541702 Score: 445
Period size: 72 Copynumber: 6.1 Consensus size: 74
92541232 TCTGTTCTTT
* *
92541242 AATTTCTGTGTTTCAAAAAATCAACTCATATTGCGA-ATGGTGAGTTGAGCCTCGGGACACGCTG
1 AATTTCTGTATTTCAAAAAATCAACTCATATTGCGAGA-GGTGAGTTGAGCCTCGAGACACGCTG
*
92541306 AGGTAATTTC
65 AGGTATTTTC
* ** * *
92541316 AATTTCTGT-TTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 AATTTCTGTATTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGA
92541379 GGTATTTTC
66 GGTATTTTC
* *
92541388 AATTTCTGT-TTTCAAAAAAAAAAAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-AGTT
1 AATTTCTGTATTTC-------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG--
*
92541451 CACATGCTGAGGTATTTTC
57 -ACACGCTGAGGTATTTTC
* * * *
92541470 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
1 AATTTCTGTATTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GA-GACACGC
92541535 TGAGGTATTTT-
63 TGAGGTATTTTC
** * *
92541546 TTTTTCAAGTTAAGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 AATTTC-TG-T-A-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACG
*
92541610 TTGAGGTATTTTC
62 CTGAGGTATTTTC
* * * * *
92541623 AATTTCTGTTTTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-A-AGACGCTG
1 AATTTCTG-TATTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTG
*
92541686 AGGTGTTTTC
65 AGGTATTTTC
*
92541696 CATTTCT
1 AATTTCT
92541703 ATTCTTTAAT
Statistics
Matches: 325, Mismatches: 40, Indels: 45
0.79 0.10 0.11
Matches are distributed among these distances:
72 63 0.19
73 26 0.08
74 13 0.04
75 36 0.11
76 22 0.07
77 58 0.18
78 38 0.12
79 3 0.01
80 37 0.11
82 25 0.08
83 4 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (74 bp):
AATTTCTGTATTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGA
GGTATTTTC
Found at i:92541714 original size:87 final size:87
Alignment explanation
Indices: 92541618--92541881 Score: 291
Period size: 91 Copynumber: 3.0 Consensus size: 87
92541608 CGTTGAGGTA
* *
92541618 TTTTCAATTTCTGTTTTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
* * *
92541683 CTGAGGTGTTTTCCATTTCTAT
66 CTGAGGTATTTTCAATTTCCAT
* *
92541705 TCTTT-AATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGA-ATGGTGAGTTGAGCCTTGACT
1 T-TTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGA-GGTGAGTTGAACC-T--C-
* * * *
92541768 CACACGCCGAGGTATTTTCAATTTCCGT
60 AAGACGCTGAGGTATTTTCAATTTCCAT
* * *
92541796 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAG-TGAAGCCTCAAGAT
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAA-CCTCAAG--
*
92541860 ACGCTGAGGTAATTTCAATTTC
63 ACGCTGAGGTATTTTCAATTTC
92541882 TGTTGTTAAA
Statistics
Matches: 147, Mismatches: 19, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
86 1 0.01
87 49 0.33
88 5 0.03
89 20 0.14
90 8 0.05
91 63 0.43
92 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (87 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
CTGAGGTATTTTCAATTTCCAT
Found at i:92542002 original size:74 final size:74
Alignment explanation
Indices: 92541796--92542233 Score: 490
Period size: 72 Copynumber: 5.7 Consensus size: 74
92541786 CAATTTCCGT
* * *
92541796 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAG-TGAAGCCTCAAGAT
1 TTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTCAAGAC
92541860 ACGCTGAGGTA
64 ACGCTGAGGTA
* * **
92541871 ATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
1 TTTTCAATTTCTGTT-TT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
*
92541936 ATGCTGAGGTA
64 ACGCTGAGGTA
* * **
92541947 TTTTCAATTTTTGTCTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
92542011 CGCTGAGGTA
65 CGCTGAGGTA
* * **
92542021 ATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
92542084 GTTGAGGTA
66 GCTGAGGTA
*
92542093 TTTTCAATTTCTGTTTTCAAAAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTTCAATTTCTGTTTTC-------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
92542158 -GGTTCACATGCTGAGGTA
59 AAG---ACACGCTGAGGTA
*
92542176 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTGT-TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
92542234 TTCAGATCAC
Statistics
Matches: 310, Mismatches: 36, Indels: 30
0.82 0.10 0.08
Matches are distributed among these distances:
72 64 0.21
73 4 0.01
74 62 0.20
75 14 0.05
76 62 0.20
77 3 0.01
79 37 0.12
80 1 0.00
81 34 0.11
83 25 0.08
84 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTA
Found at i:92543045 original size:15 final size:15
Alignment explanation
Indices: 92543025--92543059 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
92543015 AAAAAAAAAG
*
92543025 AAAAACCTACCCCAA
1 AAAAACCTAACCCAA
92543040 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
92543055 AAAAA
1 AAAAA
92543060 AAAGAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:92543048 original size:45 final size:43
Alignment explanation
Indices: 92542988--92543071 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 43
92542978 CCATTAAGCC
*
92542988 CCCCAAAAAAAACCTATCCCCCTCAAAAAAAAAA-AAGAAAAACCTA
1 CCCCAAAAAAAACCTA---ACC-CAAAAAAAAAAGAAGAAAAACCTA
92543034 CCCC-AAAAAAACCTAACCCAAAAAAAAAAGAAGAAAAA
1 CCCCAAAAAAAACCTAACCCAAAAAAAAAAGAAGAAAAA
92543072 AGAAAAACCT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
41 11 0.31
42 10 0.28
45 11 0.31
46 4 0.11
ACGTcount: A:0.63, C:0.27, G:0.04, T:0.06
Consensus pattern (43 bp):
CCCCAAAAAAAACCTAACCCAAAAAAAAAAGAAGAAAAACCTA
Found at i:92543060 original size:16 final size:15
Alignment explanation
Indices: 92543025--92543060 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
92543015 AAAAAAAAAG
*
92543025 AAAAACCTACCCCAA
1 AAAAACCTACCCAAA
92543040 AAAAACCTAACCCAAA
1 AAAAACCT-ACCCAAA
92543056 AAAAA
1 AAAAA
92543061 AAGAAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.64, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTACCCAAA
Found at i:92543103 original size:15 final size:15
Alignment explanation
Indices: 92543053--92543103 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
92543043 AACCTAACCC
92543053 AAAAAAAAAAGA-AGA
1 AAAAAAAAAAGATA-A
**
92543068 AAAAAGAAAAACCTAA
1 AAAAA-AAAAAGATAA
*
92543084 CAAAAAAAAAGATAA
1 AAAAAAAAAAGATAA
92543099 AAAAA
1 AAAAA
92543104 CCTAGCCACC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 17 0.61
16 10 0.36
17 1 0.04
ACGTcount: A:0.82, C:0.06, G:0.08, T:0.04
Consensus pattern (15 bp):
AAAAAAAAAAGATAA
Found at i:92543321 original size:17 final size:16
Alignment explanation
Indices: 92543299--92543351 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 16
92543289 CCTAAAGGTG
92543299 ATTTTATCTTCTTTATT
1 ATTTTATCTT-TTTATT
92543316 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTT-TTTATT
92543333 ATTTTAT-TTTTTATT
1 ATTTTATCTTTTTATT
92543348 -TTTT
1 ATTTT
92543352 TTCCTTTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
14 7 0.21
15 4 0.12
16 1 0.03
17 14 0.42
18 7 0.21
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (16 bp):
ATTTTATCTTTTTATT
Found at i:92543407 original size:13 final size:13
Alignment explanation
Indices: 92543389--92543438 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
92543379 TATATACATC
92543389 ATAATAAAAAAAT
1 ATAATAAAAAAAT
*
92543402 ATAATAAAAATAT
1 ATAATAAAAAAAT
*
92543415 ATATACAAAACAAAT
1 ATA-ATAAAA-AAAT
92543430 ATAA-AAAAA
1 ATAATAAAAA
92543439 TTACATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 1 0.03
13 19 0.59
14 6 0.19
15 6 0.19
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (13 bp):
ATAATAAAAAAAT
Found at i:92543624 original size:28 final size:29
Alignment explanation
Indices: 92543569--92543624 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
92543559 TCTTCTTTTT
*
92543569 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTTCGTATTTAACTTAGA
*
92543598 TTTCATATTA-TTTT-GTATTTAATTTAG
1 TTTCAT-TTATTTTTCGTATTTAACTTAG
92543625 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 11 0.46
29 10 0.42
30 3 0.12
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.61
Consensus pattern (29 bp):
TTTCATTTATTTTTCGTATTTAACTTAGA
Found at i:92543885 original size:11 final size:11
Alignment explanation
Indices: 92543867--92543896 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
92543857 GTGTATATTG
92543867 TATATATTATA
1 TATATATTATA
*
92543878 TTTATATTATA
1 TATATATTATA
92543889 TATATATT
1 TATATATT
92543897 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:92545862 original size:20 final size:20
Alignment explanation
Indices: 92545829--92545878 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
92545819 TAAAATAATT
* *
92545829 AATATATAAAGTAAT-TTAA
1 AATAAATAATGTAATCTTAA
92545848 AATAAAATAATGTAATCTTAA
1 AAT-AAATAATGTAATCTTAA
92545869 AATAAATAAT
1 AATAAATAAT
92545879 ATATGTAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 17 0.63
21 7 0.26
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (20 bp):
AATAAATAATGTAATCTTAA
Found at i:92547290 original size:17 final size:17
Alignment explanation
Indices: 92547232--92547290 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 17
92547222 TAATAAATTT
*
92547232 AAAATATAATATATAATA
1 AAAATATAAT-TATAAAA
* *
92547250 AAAATATATTTAT-AAG
1 AAAATATAATTATAAAA
*
92547266 AATA-ATAATTATAAAA
1 AAAATATAATTATAAAA
92547282 AAAATATAA
1 AAAATATAA
92547291 AATATATTGG
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
15 7 0.22
16 9 0.28
17 7 0.22
18 9 0.28
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATATAATTATAAAA
Found at i:92548526 original size:33 final size:30
Alignment explanation
Indices: 92548482--92548551 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
92548472 AAAAATATAT
*
92548482 ATATATATATATATAAATAATAGTATTAGAA
1 ATATATATATATATAAATAATAATATTA-AA
* *
92548513 ATCATATAGTATATATAACTGATAATATTAAA
1 AT-ATATA-TATATATAAATAATAATATTAAA
92548545 ATATATA
1 ATATATA
92548552 CATAATATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (30 bp):
ATATATATATATATAAATAATAATATTAAA
Found at i:92548726 original size:14 final size:16
Alignment explanation
Indices: 92548697--92548728 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
92548687 AGGTAAATAT
92548697 AATAAAATGATATTAA
1 AATAAAATGATATTAA
92548713 AATAAAA-G-TATTAA
1 AATAAAATGATATTAA
92548727 AA
1 AA
92548729 ACAGTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (16 bp):
AATAAAATGATATTAA
Found at i:92548774 original size:3 final size:3
Alignment explanation
Indices: 92548766--92548813 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
92548756 ACAAGGATAT
92548766 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92548814 TTGAAACACA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:92548925 original size:3 final size:3
Alignment explanation
Indices: 92548917--92548968 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
92548907 AATGTATTTC
92548917 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
92548965 AAT A
1 AAT A
92548969 TTGAAATGCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:92549464 original size:11 final size:12
Alignment explanation
Indices: 92549448--92549483 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
92549438 AGGAAAAAAA
92549448 GAAGAGAG-AGG
1 GAAGAGAGAAGG
92549459 GAAGAGAGAAGG
1 GAAGAGAGAAGG
92549471 G-AGAGAGAAGG
1 GAAGAGAGAAGG
92549482 GA
1 GA
92549484 GGGGAATCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:92549597 original size:12 final size:12
Alignment explanation
Indices: 92549580--92549623 Score: 79
Period size: 12 Copynumber: 3.6 Consensus size: 12
92549570 AGGTAAATTT
92549580 TTTTTTTGTATA
1 TTTTTTTGTATA
92549592 TTTTTTTGTATA
1 TTTTTTTGTATA
92549604 TTTTTTTTGTATA
1 -TTTTTTTGTATA
92549617 TTTTTTT
1 TTTTTTT
92549624 TTATGTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 19 0.61
13 12 0.39
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.80
Consensus pattern (12 bp):
TTTTTTTGTATA
Found at i:92549612 original size:25 final size:25
Alignment explanation
Indices: 92549579--92549632 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
92549569 AAGGTAAATT
92549579 TTTTTTTTGTATATTTTTTTGTATA
1 TTTTTTTTGTATATTTTTTTGTATA
* *
92549604 TTTTTTTTGTATATTTTTTTTTATG
1 TTTTTTTTGTATATTTTTTTGTATA
92549629 TTTT
1 TTTT
92549633 AATATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (25 bp):
TTTTTTTTGTATATTTTTTTGTATA
Found at i:92549632 original size:12 final size:13
Alignment explanation
Indices: 92549579--92549624 Score: 85
Period size: 13 Copynumber: 3.6 Consensus size: 13
92549569 AAGGTAAATT
92549579 TTTTTTTTGTATA
1 TTTTTTTTGTATA
92549592 -TTTTTTTGTATA
1 TTTTTTTTGTATA
92549604 TTTTTTTTGTATA
1 TTTTTTTTGTATA
92549617 TTTTTTTT
1 TTTTTTTT
92549625 TATGTTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.38
13 20 0.62
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (13 bp):
TTTTTTTTGTATA
Found at i:92550049 original size:35 final size:35
Alignment explanation
Indices: 92550004--92550072 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
92549994 GAGTGTGTGA
*
92550004 TGGTGTTGGTGGCAGACAGCATGGGAGAATGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGAG
*
92550039 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
92550073 AGAGGCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.22, C:0.10, G:0.49, T:0.19
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGAG
Found at i:92551842 original size:136 final size:137
Alignment explanation
Indices: 92551598--92551883 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
92551588 CATTGGGCCT
** * *
92551598 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
92551663 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
92551727 CATATGC
131 CATATGC
92551734 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
92551799 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
92551864 CATATGC
131 CATATGC
92551871 AAGCCCATTTGGG
1 AAGCCCATTTGGG
92551884 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 122 0.85
137 22 0.15
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:92553707 original size:26 final size:26
Alignment explanation
Indices: 92553671--92553806 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
92553661 CATGATATTC
92553671 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
92553697 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
92553723 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
92553749 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* **
92553775 TTATCATGGAACATTTACCTAACTTA
1 TTATCATGAAACATTTACCTAACCCA
92553801 TTATCA
1 TTATCA
92553807 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:92554153 original size:14 final size:16
Alignment explanation
Indices: 92554124--92554155 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
92554114 AGGTAAATAT
92554124 AATAAAATGATATTAA
1 AATAAAATGATATTAA
92554140 AATAAAA-G-TATTAA
1 AATAAAATGATATTAA
92554154 AA
1 AA
92554156 ACAGTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (16 bp):
AATAAAATGATATTAA
Found at i:92554201 original size:3 final size:3
Alignment explanation
Indices: 92554193--92554228 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
92554183 ACAAGGATAT
92554193 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92554229 TTGAAACACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:92554340 original size:3 final size:3
Alignment explanation
Indices: 92554332--92554380 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
92554322 AATGTATTTC
92554332 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
92554380 A
1 A
92554381 TTGAAATGCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:92554875 original size:11 final size:12
Alignment explanation
Indices: 92554859--92554894 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
92554849 AGGAAAAAAA
92554859 GAAGAGAG-AGG
1 GAAGAGAGAAGG
92554870 GAAGAGAGAAGG
1 GAAGAGAGAAGG
92554882 G-AGAGAGAAGG
1 GAAGAGAGAAGG
92554893 GA
1 GA
92554895 GGGGAATCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:92555010 original size:13 final size:13
Alignment explanation
Indices: 92554992--92555061 Score: 119
Period size: 13 Copynumber: 5.6 Consensus size: 13
92554982 GTAAAATTTT
92554992 TTTTTTTTGTATA
1 TTTTTTTTGTATA
92555005 -TTTTTTTGTATA
1 TTTTTTTTGTATA
92555017 TTTTTTTTGTATA
1 TTTTTTTTGTATA
92555030 --TTTTTTGTATA
1 TTTTTTTTGTATA
92555041 TTTTTTTTGTATA
1 TTTTTTTTGTATA
92555054 TTTTTTTT
1 TTTTTTTT
92555062 TATGTTTTAA
Statistics
Matches: 54, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.20
12 12 0.22
13 31 0.57
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (13 bp):
TTTTTTTTGTATA
Found at i:92555033 original size:24 final size:24
Alignment explanation
Indices: 92554992--92555059 Score: 127
Period size: 24 Copynumber: 2.8 Consensus size: 24
92554982 GTAAAATTTT
92554992 TTTTTTTTGTATATTTTTTTGTATA
1 TTTTTTTTGTATA-TTTTTTGTATA
92555017 TTTTTTTTGTATATTTTTTGTATA
1 TTTTTTTTGTATATTTTTTGTATA
92555041 TTTTTTTTGTATATTTTTT
1 TTTTTTTTGTATATTTTTT
92555060 TTTATGTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 30 0.70
25 13 0.30
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (24 bp):
TTTTTTTTGTATATTTTTTGTATA
Found at i:92555069 original size:12 final size:12
Alignment explanation
Indices: 92554992--92555069 Score: 95
Period size: 12 Copynumber: 6.3 Consensus size: 12
92554982 GTAAAATTTT
92554992 TTTTTTTTGTATA
1 TTTTTTTT-TATA
*
92555005 TTTTTTTGTATA
1 TTTTTTTTTATA
92555017 TTTTTTTTGTATA
1 TTTTTTTT-TATA
*
92555030 -TTTTTTGTATA
1 TTTTTTTTTATA
92555041 TTTTTTTTGTATA
1 TTTTTTTT-TATA
*
92555054 TTTTTTTTTATG
1 TTTTTTTTTATA
92555066 TTTT
1 TTTT
92555070 AATATATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
11 4 0.07
12 30 0.53
13 23 0.40
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (12 bp):
TTTTTTTTTATA
Found at i:92555069 original size:24 final size:23
Alignment explanation
Indices: 92554988--92555069 Score: 112
Period size: 24 Copynumber: 3.5 Consensus size: 23
92554978 AATGGTAAAA
92554988 TTTT-TTTTTTTTGTATATTTTT
1 TTTTATTTTTTTTGTATATTTTT
92555010 TTGTATATTTTTTTTGTATATTTTT
1 TT-T-TATTTTTTTTGTATATTTTT
*
92555035 TGTATATTTTTTTTGTATATTTTT
1 T-TTTATTTTTTTTGTATATTTTT
*
92555059 TTTTATGTTTT
1 TTTTATTTTTT
92555070 AATATATATA
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
22 2 0.04
23 9 0.17
24 22 0.42
25 19 0.36
26 1 0.02
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.79
Consensus pattern (23 bp):
TTTTATTTTTTTTGTATATTTTT
Found at i:92556076 original size:17 final size:18
Alignment explanation
Indices: 92556023--92556129 Score: 155
Period size: 17 Copynumber: 5.9 Consensus size: 18
92556013 AATCATATCT
*
92556023 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
92556042 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
92556060 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
92556077 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
92556095 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
92556112 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
92556130 TGAAGATTAT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 32 0.40
18 32 0.40
19 16 0.20
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:92556081 original size:35 final size:35
Alignment explanation
Indices: 92556023--92556129 Score: 187
Period size: 35 Copynumber: 3.0 Consensus size: 35
92556013 AATCATATCT
92556023 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
92556060 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
92556095 TCTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
92556130 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
35 54 0.78
36 5 0.07
37 10 0.14
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:92560065 original size:36 final size:34
Alignment explanation
Indices: 92560011--92560084 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 34
92560001 CTGGTCTAAT
*
92560011 ATGACATTCTTATATGATATATATGTTTCTGAAAAC
1 ATGACATTCTTATATG--ATATATGTTTATGAAAAC
* *
92560047 ATGACATTC-TAGTTTGATATATGTTTATGAAAAT
1 ATGACATTCTTA-TATGATATATGTTTATGAAAAC
92560081 ATGA
1 ATGA
92560085 TACTCTGATC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
34 20 0.59
35 2 0.06
36 12 0.35
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (34 bp):
ATGACATTCTTATATGATATATGTTTATGAAAAC
Found at i:92569910 original size:26 final size:26
Alignment explanation
Indices: 92569880--92569935 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
92569870 TTGATAAAAT
92569880 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92569906 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92569932 TGAT
1 TGAT
92569936 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:92571444 original size:26 final size:26
Alignment explanation
Indices: 92571415--92571467 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
92571405 TTTACAGTTT
92571415 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
92571441 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
92571467 T
1 T
92571468 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:92572691 original size:3 final size:3
Alignment explanation
Indices: 92572683--92573008 Score: 107
Period size: 3 Copynumber: 107.0 Consensus size: 3
92572673 AAAACGATAG
* * *
92572683 TAA TAA TAA TAA AAA GGT-A TAA TAA T-A TAT TAGA TAG TAA -AA -AA
1 TAA TAA TAA TAA TAA --TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* *
92572727 TAA TAAA TAAA TAA -AA TAA TAA TAA TAG TAA TAA -AA -AA TGA TAA
1 TAA T-AA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
92572771 TAG TGA TAT TAG TAG TAA TAA TAA TAA T-A TGGAA TAA TAA TATA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T--AA TAA TAA TA-A TAA
* * * * * * *
92572818 CAA TAA CAA CAG TAA T-A TGAA AAA TAA GAAA TAA CAA TACA CTAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA -TAA TAA TAA TA-A -TAA TAA
* * * * *
92572866 GT-T TAG TAA TAGA TCAC TAA TAA TAA TAG TCAA AAA TAA TAA TAA T-A
1 -TAA TAA TAA TA-A T-AA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
* * *** * * * * *
92572913 TAT TAC TAA GGG TAA TGA TGA TGA TGA TAA TAA TAA TAA TAA TCA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
92572961 TAA TAA TAA TAA TAA TAA TCA TAA TAA TAA TAA GAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92573009 CTTATATTAA
Statistics
Matches: 240, Mismatches: 59, Indels: 48
0.69 0.17 0.14
Matches are distributed among these distances:
2 20 0.08
3 192 0.80
4 23 0.10
5 5 0.02
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:92572745 original size:38 final size:39
Alignment explanation
Indices: 92572678--92572770 Score: 95
Period size: 38 Copynumber: 2.5 Consensus size: 39
92572668 TAACGAAAAC
* * * *
92572678 GATAGT-AATAATAATAAAAAGGTATAATAAT-ATATTA
1 GATAGTAAAAAATAATAAAAAGATAAAATAATAATAATA
92572715 GATAGTAAAAAATAATAAATAA-ATAAAATAATAATAATA
1 GATAGTAAAAAATAATAAA-AAGATAAAATAATAATAATA
* *
92572754 G-TAATAAAAAATGATAA
1 GATAGTAAAAAATAATAA
92572771 TAGTGATATT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
37 6 0.13
38 33 0.70
39 8 0.17
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (39 bp):
GATAGTAAAAAATAATAAAAAGATAAAATAATAATAATA
Found at i:92572770 original size:19 final size:20
Alignment explanation
Indices: 92572716--92572774 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 20
92572706 AATATATTAG
92572716 ATAGTAA-AAAATAAT-A-A
1 ATAGTAATAAAATAATAATA
92572733 ATA--AATAAAATAATAATA
1 ATAGTAATAAAATAATAATA
*
92572751 ATAGTAATAAAA-AATGATA
1 ATAGTAATAAAATAATAATA
92572770 ATAGT
1 ATAGT
92572775 GATATTAGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
15 2 0.06
16 8 0.22
17 4 0.11
18 4 0.11
19 11 0.31
20 7 0.19
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (20 bp):
ATAGTAATAAAATAATAATA
Found at i:92574516 original size:10 final size:10
Alignment explanation
Indices: 92574501--92574538 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
92574491 TTATGTCTAA
92574501 AAAAAATGGT
1 AAAAAATGGT
92574511 AAAAAATTGGCT
1 AAAAAA-TGG-T
92574523 AAAAAATGGT
1 AAAAAATGGT
92574533 AAAAAA
1 AAAAAA
92574539 AAAGAAGGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 13 0.50
11 6 0.23
12 7 0.27
ACGTcount: A:0.63, C:0.03, G:0.16, T:0.18
Consensus pattern (10 bp):
AAAAAATGGT
Found at i:92574540 original size:12 final size:11
Alignment explanation
Indices: 92574500--92574539 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
92574490 TTTATGTCTA
92574500 AAAAAAATGGT
1 AAAAAAATGGT
*
92574511 AAAAAATTGGCT
1 AAAAAAATGG-T
92574523 -AAAAAATGGT
1 AAAAAAATGGT
92574533 AAAAAAA
1 AAAAAAA
92574540 AAGAAGGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 1 0.04
11 23 0.92
12 1 0.04
ACGTcount: A:0.65, C:0.03, G:0.15, T:0.17
Consensus pattern (11 bp):
AAAAAAATGGT
Found at i:92579019 original size:18 final size:17
Alignment explanation
Indices: 92578989--92579031 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 17
92578979 AATCTGGGCG
92578989 TGTGGGCCACACGGGAA
1 TGTGGGCCACACGGGAA
*
92579006 TGTGGGCTCACACGGGCA
1 TGTGGGC-CACACGGGAA
92579024 TGTGGGCC
1 TGTGGGCC
92579032 CATATTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.16, C:0.26, G:0.42, T:0.16
Consensus pattern (17 bp):
TGTGGGCCACACGGGAA
Found at i:92582906 original size:29 final size:30
Alignment explanation
Indices: 92582845--92582911 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
92582835 AATTTTAAAA
* *
92582845 TTAATAAATGATAAAATTGTACTTTGATATT
1 TTAA-AAATGATAAAATTGTAATTTAATATT
* * *
92582876 TTTAAAATGA-AAAATTTTAATTTAATCTT
1 TTAAAAATGATAAAATTGTAATTTAATATT
92582905 TTAAAAA
1 TTAAAAA
92582912 ACATAAAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
29 21 0.70
30 6 0.20
31 3 0.10
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (30 bp):
TTAAAAATGATAAAATTGTAATTTAATATT
Found at i:92583439 original size:21 final size:22
Alignment explanation
Indices: 92583401--92583441 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
92583391 TAAAATTTTA
92583401 AAATATTTAAAAATTAATTAAT
1 AAATATTTAAAAATTAATTAAT
*
92583423 AAATTTTTAAAAA-TAATTA
1 AAATATTTAAAAATTAATTA
92583442 TTATTGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATATTTAAAAATTAATTAAT
Found at i:92593348 original size:3 final size:3
Alignment explanation
Indices: 92593342--92593472 Score: 144
Period size: 3 Copynumber: 44.0 Consensus size: 3
92593332 ATAACATGTA
92593342 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
92593390 AAT AAT AAT AAT AGTT AGA- AAT AA- AA- AAT AAT AGA- AGT AAT AAT
1 AAT AAT AAT AAT A-AT A-AT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
** * * *
92593434 AAT AAT GGT AAT AAA AAT AAA AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
92593473 GAGTTAAGTT
Statistics
Matches: 109, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
2 5 0.05
3 100 0.92
4 4 0.04
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:92595430 original size:30 final size:30
Alignment explanation
Indices: 92595362--92595430 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
92595352 TTATTTTAAA
**
92595362 TTAATAAATAATAAAATTATATTTTGTTTCT
1 TTAA-AAATAATAAAATTATATTTAATTTCT
* *
92595393 TTCAAAATAATAAAATTTTAATTTAATTT-T
1 TTAAAAATAATAAAATTAT-ATTTAATTTCT
92595423 TTAAAAAT
1 TTAAAAAT
92595431 TTTAAATATA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (30 bp):
TTAAAAATAATAAAATTATATTTAATTTCT
Found at i:92595682 original size:21 final size:21
Alignment explanation
Indices: 92595656--92595700 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
92595646 TTTATGAAAA
*
92595656 TTAAAATA-TAAATTTAAAATT
1 TTAAAAGATTAAA-TTAAAATT
*
92595677 TTAAAAGATTAAATTATAATT
1 TTAAAAGATTAAATTAAAATT
92595698 TTA
1 TTA
92595701 TTATTTTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
TTAAAAGATTAAATTAAAATT
Found at i:92596635 original size:21 final size:19
Alignment explanation
Indices: 92596605--92596647 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
92596595 TGAAGATAAA
*
92596605 ATTTTAAAAATTAATTAATAT
1 ATTTTAAAAAATAA-TAAT-T
*
92596626 ATTTTTAAAAATAATAATT
1 ATTTTAAAAAATAATAATT
92596645 ATT
1 ATT
92596648 GATAAAGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 4 0.20
21 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTTAAAAAATAATAATT
Found at i:92596799 original size:8 final size:8
Alignment explanation
Indices: 92596786--92596812 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
92596776 AGCAATATAA
92596786 TAAAGAAG
1 TAAAGAAG
92596794 TAAAGAAG
1 TAAAGAAG
92596802 TAAAGAAG
1 TAAAGAAG
92596810 TAA
1 TAA
92596813 TGGCAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.15
Consensus pattern (8 bp):
TAAAGAAG
Found at i:92599421 original size:9 final size:9
Alignment explanation
Indices: 92599407--92599443 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
92599397 TATAGTTTGA
92599407 TATTCGAAT
1 TATTCGAAT
92599416 TATTCGAAT
1 TATTCGAAT
*
92599425 TATTCGAGT
1 TATTCGAAT
92599434 TATTCGAAT
1 TATTCGAAT
92599443 T
1 T
92599444 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:92599913 original size:43 final size:43
Alignment explanation
Indices: 92599866--92599953 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 43
92599856 TAAAACCATT
* * *
92599866 ATAATTTGTAAAAATATTTT-ATTTAAATTCCATTTGGTTTTTA
1 ATAATTCGTAAAAATATTTTAAATAAAATT-CATTTGGTTTTTA
*
92599909 ATAATTCGTAAAATTATTTTAAATAAAATTCATTTGGTTTTTA
1 ATAATTCGTAAAAATATTTTAAATAAAATTCATTTGGTTTTTA
92599952 AT
1 AT
92599954 TTTATAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 33 0.82
44 7 0.17
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.51
Consensus pattern (43 bp):
ATAATTCGTAAAAATATTTTAAATAAAATTCATTTGGTTTTTA
Found at i:92599971 original size:40 final size:43
Alignment explanation
Indices: 92599890--92599972 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
92599880 TATTTTATTT
* * *
92599890 AAATTCCATTTGGTTTTTAATAATTCGTAAAATTATTTTAAATA
1 AAATTCCATTTGGTTTTTAAT-ATTCATAAAATAATATTAAATA
*
92599934 AAATT-CATTTGGTTTTTAAT-TTTATAAAA-AATATTAAAT
1 AAATTCCATTTGGTTTTTAATATTCATAAAATAATATTAAAT
92599973 TATAAAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
40 8 0.23
41 7 0.20
43 15 0.43
44 5 0.14
ACGTcount: A:0.41, C:0.05, G:0.06, T:0.48
Consensus pattern (43 bp):
AAATTCCATTTGGTTTTTAATATTCATAAAATAATATTAAATA
Found at i:92601672 original size:13 final size:14
Alignment explanation
Indices: 92601656--92601696 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
92601646 TTTACAGATA
92601656 CAGATA-ACAGAAT
1 CAGATATACAGAAT
92601669 CAGATATACAGAA-
1 CAGATATACAGAAT
* *
92601682 CAGGTATATAGAAT
1 CAGATATACAGAAT
92601696 C
1 C
92601697 CTACCCCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (14 bp):
CAGATATACAGAAT
Found at i:92613938 original size:63 final size:62
Alignment explanation
Indices: 92613819--92613943 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 62
92613809 TTGAAAAATC
92613819 AAATGTTAGTGTATACAGTGTTGGCATTTTTTATGACACATGGCATAGAAGACTTGGCTATT
1 AAATGTTAGTGTATACAGTGTTGGCATTTTTTATGACACATGGCATAGAAGACTTGGCTATT
*
92613881 AAATGTTAGTGTATACAGTGTTGG-AGTTTTTTTATGACACGTGGCATAGAAGACTTGGCTATT
1 AAATGTTAGTGTATACAGTGTTGGCA--TTTTTTATGACACATGGCATAGAAGACTTGGCTATT
92613944 CTCTTCAGAT
Statistics
Matches: 60, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
61 1 0.02
62 24 0.40
63 35 0.58
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (62 bp):
AAATGTTAGTGTATACAGTGTTGGCATTTTTTATGACACATGGCATAGAAGACTTGGCTATT
Found at i:92615963 original size:25 final size:21
Alignment explanation
Indices: 92615916--92615959 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
92615906 TGTGTAGGAG
92615916 TTATTTAGTTTGTTTTTATGA
1 TTATTTAGTTTGTTTTTATGA
*
92615937 TTATTTAGTTTGTTGTTATGA
1 TTATTTAGTTTGTTTTTATGA
92615958 TT
1 TT
92615960 GATTGTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.16, T:0.66
Consensus pattern (21 bp):
TTATTTAGTTTGTTTTTATGA
Found at i:92625914 original size:13 final size:14
Alignment explanation
Indices: 92625888--92625914 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92625878 TATAAAAATA
92625888 TTATTTAAATTTTT
1 TTATTTAAATTTTT
92625902 TTATTTAAATTTT
1 TTATTTAAATTTT
92625915 AGTCTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATTTAAATTTTT
Found at i:92630996 original size:36 final size:36
Alignment explanation
Indices: 92630956--92631028 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
92630946 ATGTTACTGA
* * *
92630956 ACACAAGATATCATAATATATTTATATAGTTACAAG
1 ACACAAGATATAATAATATATTTATATAATCACAAG
*
92630992 ACACAAGGTATAATAATATATTTATATAATCACAAG
1 ACACAAGATATAATAATATATTTATATAATCACAAG
92631028 A
1 A
92631029 AACCAAACTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (36 bp):
ACACAAGATATAATAATATATTTATATAATCACAAG
Found at i:92636319 original size:20 final size:20
Alignment explanation
Indices: 92636294--92636333 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
92636284 ATTTCCTCCC
92636294 TATGTTGCTTTCCGACCAAA
1 TATGTTGCTTTCCGACCAAA
92636314 TATGTTGCTTTCCGACCAAA
1 TATGTTGCTTTCCGACCAAA
92636334 CAATGAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (20 bp):
TATGTTGCTTTCCGACCAAA
Found at i:92636732 original size:21 final size:21
Alignment explanation
Indices: 92636707--92636748 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
92636697 ATCTATTTAG
92636707 TGCCTTCAATCTCTAATCTAA
1 TGCCTTCAATCTCTAATCTAA
92636728 TGCCTTCAATCTCTAATCTAA
1 TGCCTTCAATCTCTAATCTAA
92636749 CACTTCCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.38
Consensus pattern (21 bp):
TGCCTTCAATCTCTAATCTAA
Found at i:92644289 original size:18 final size:18
Alignment explanation
Indices: 92644266--92644354 Score: 108
Period size: 18 Copynumber: 4.9 Consensus size: 18
92644256 CGTTTAAGGT
92644266 ACTATTCACGTATACAGC
1 ACTATTCACGTATACAGC
*
92644284 ACTATTCACGTATACAGT
1 ACTATTCACGTATACAGC
92644302 ACTATTCACGTATAC-GAC
1 ACTATTCACGTATACAG-C
* * * *
92644320 ACTATTTACGAATACGGT
1 ACTATTCACGTATACAGC
*
92644338 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
92644355 TAGTTGGGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
17 1 0.02
18 58 0.97
19 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:92644311 original size:36 final size:37
Alignment explanation
Indices: 92644264--92644354 Score: 132
Period size: 36 Copynumber: 2.5 Consensus size: 37
92644254 ACCGTTTAAG
*
92644264 GTACTATTCACGTATACAG-CACTATTCACGTATACA
1 GTACTATTCACGTATACAGACACTATTCACGAATACA
* *
92644300 GTACTATTCACGTATAC-GACACTATTTACGAATACG
1 GTACTATTCACGTATACAGACACTATTCACGAATACA
*
92644336 GTACTGTTCACGTATACAG
1 GTACTATTCACGTATACAG
92644355 TAGTTGGGAT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
35 1 0.02
36 47 0.96
37 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (37 bp):
GTACTATTCACGTATACAGACACTATTCACGAATACA
Found at i:92651218 original size:26 final size:26
Alignment explanation
Indices: 92651178--92651233 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
92651168 ATATAATAAT
92651178 AATATAATAAATAATACA-AATTTAAA
1 AATATAATAAATAATA-ATAATTTAAA
** *
92651204 AATATAATACTTAATAATAATTTCAA
1 AATATAATAAATAATAATAATTTAAA
92651230 AATA
1 AATA
92651234 GCATTTACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (26 bp):
AATATAATAAATAATAATAATTTAAA
Found at i:92652026 original size:2 final size:2
Alignment explanation
Indices: 92652021--92652049 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
92652011 ACCATTTACA
92652021 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92652050 AATCACCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92656410 original size:26 final size:25
Alignment explanation
Indices: 92656348--92656430 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 25
92656338 TGATACAAAT
92656348 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
92656373 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
92656399 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
92656425 TGATAA
1 TGATAA
92656431 GAATTCATGT
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 23 0.42
26 30 0.55
27 2 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:92658185 original size:21 final size:21
Alignment explanation
Indices: 92658159--92658206 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
92658149 ATTCCCCACA
92658159 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
92658180 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
92658201 TTGAGT
1 TGGAGT
92658207 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:92658457 original size:136 final size:136
Alignment explanation
Indices: 92658213--92658497 Score: 552
Period size: 136 Copynumber: 2.1 Consensus size: 136
92658203 GAGTAGTCTC
92658213 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
92658278 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
92658343 CTGTTA
131 CTGTTA
92658349 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
92658414 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
92658479 CTGTTA
131 CTGTTA
**
92658485 CCTGAATGGGCTT
1 CCCAAATGGGCTT
92658498 AGGCCCAATG
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 147 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:92662241 original size:26 final size:25
Alignment explanation
Indices: 92662179--92662261 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 25
92662169 TGATACAAAT
92662179 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
92662204 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
92662230 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
92662256 TGATAA
1 TGATAA
92662262 GAATTCATGT
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 23 0.42
26 30 0.55
27 2 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:92664016 original size:21 final size:21
Alignment explanation
Indices: 92663990--92664037 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
92663980 ATTCCCCACA
92663990 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
92664011 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
92664032 TTGAGT
1 TGGAGT
92664038 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:92666970 original size:8 final size:9
Alignment explanation
Indices: 92666926--92666998 Score: 51
Period size: 9 Copynumber: 7.7 Consensus size: 9
92666916 TTACAAATAA
92666926 AATATATAAT
1 AATATA-AAT
*
92666936 AATGTAAAT
1 AATATAAAT
92666945 CACATAATAAAT
1 -A-AT-ATAAAT
92666957 AATATAAA-
1 AATATAAAT
*
92666965 AATATATAT
1 AATATAAAT
92666974 AATA-AAAT
1 AATATAAAT
*
92666982 CTATATAATAT
1 -AATATAA-AT
92666993 AATATA
1 AATATA
92666999 TATATAAGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
8 10 0.20
9 15 0.30
10 15 0.30
11 5 0.10
12 5 0.10
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.34
Consensus pattern (9 bp):
AATATAAAT
Found at i:92666986 original size:14 final size:14
Alignment explanation
Indices: 92666921--92667176 Score: 110
Period size: 14 Copynumber: 18.1 Consensus size: 14
92666911 ATAATTTACA
92666921 AATAAAATATATAAT
1 AATAAAATATAT-AT
* * *
92666936 AATGTAAAT-CACAT
1 AAT-AAAATATATAT
92666950 AAT-AAATA-ATAT
1 AATAAAATATATAT
92666962 -A-AAAATATATAT
1 AATAAAATATATAT
*
92666974 AATAAAATCTATAT
1 AATAAAATATATAT
92666988 AATATAATATATATAT
1 AATA-AA-ATATATAT
* *
92667004 AAGAAAGATAGATAT
1 AATAAA-ATATATAT
*
92667019 TATAAGGAATAATATAT
1 AATAA--AAT-ATATAT
92667036 AATAAAATATAGTATGT
1 AATAAAATATA-TA--T
* *
92667053 AGTAAAA-ATACAT
1 AATAAAATATATAT
*
92667066 AA-ATAA-A-ATAT
1 AATAAAATATATAT
*
92667077 AATGAAATATGATAT
1 AATAAAATAT-ATAT
* *
92667092 GAT-AAAGA-ATAT
1 AATAAAATATATAT
92667104 AATAATAATA-ATAT
1 AATAA-AATATATAT
* * *
92667118 AAT-AAGTATTTTT
1 AATAAAATATATAT
92667131 ATATAAAA-ATATAGT
1 A-ATAAAATATATA-T
92667146 AATATAAATTATATAT
1 AATA-AAA-TATATAT
92667162 AATAAAA-ATATAT
1 AATAAAATATATAT
92667175 AA
1 AA
92667177 CATATAGTAA
Statistics
Matches: 184, Mismatches: 30, Indels: 56
0.68 0.11 0.21
Matches are distributed among these distances:
11 11 0.06
12 26 0.14
13 17 0.09
14 44 0.24
15 40 0.22
16 24 0.13
17 22 0.12
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.34
Consensus pattern (14 bp):
AATAAAATATATAT
Found at i:92666988 original size:16 final size:16
Alignment explanation
Indices: 92666960--92667221 Score: 88
Period size: 16 Copynumber: 16.4 Consensus size: 16
92666950 AATAAATAAT
92666960 ATAAAA-ATATATATA
1 ATAAAATATATATATA
*
92666975 AT-AAA-ATCTATATA
1 ATAAAATATATATATA
*
92666989 ATATAATATATATATA
1 ATAAAATATATATATA
* *
92667005 AGAAAGATAGATAT-T-
1 ATAAA-ATATATATATA
92667020 ATAAGGAATA-ATATATA
1 ATAA--AATATATATATA
*
92667037 ATAAAATATAGTATGTA
1 ATAAAATATA-TATATA
* *
92667054 GTAAAA-ATACATA-A
1 ATAAAATATATATATA
92667068 ATAAAATATA-ATGA-A
1 ATAAAATATATAT-ATA
** * *
92667083 ATATGATATGATAAAGA
1 ATAAAATAT-ATATATA
*
92667100 ATATAATA-ATA-ATA
1 ATAAAATATATATATA
* * *
92667114 ATATAATAAGTATTTTTA
1 ATAAAAT-A-TATATATA
*
92667132 TATAAAA-ATATA-GTA
1 -ATAAAATATATATATA
92667147 ATATAAAT-TATATATA
1 ATA-AAATATATATATA
92667163 ATAAAAATATATAACATATA
1 AT-AAAATATAT---ATATA
* *
92667183 GTAAAATATAAATATA
1 ATAAAATATATATATA
* * *
92667199 ACAGAATAGATATAATA
1 ATAAAATATATAT-ATA
92667216 A-AAAAT
1 ATAAAAT
92667222 TTAAAAATAT
Statistics
Matches: 188, Mismatches: 31, Indels: 55
0.69 0.11 0.20
Matches are distributed among these distances:
14 33 0.18
15 42 0.22
16 50 0.27
17 42 0.22
18 2 0.01
19 13 0.07
20 6 0.03
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (16 bp):
ATAAAATATATATATA
Found at i:92667117 original size:41 final size:42
Alignment explanation
Indices: 92667026--92667122 Score: 107
Period size: 41 Copynumber: 2.4 Consensus size: 42
92667016 TATTATAAGG
*
92667026 AATAAT-ATATAATAAAATATAGTATGTAGTAAAAATACATA
1 AATAATAATATAATAAAATATAGTATGTAGTAAAAATAAATA
*
92667067 AATAA-AATATAATGAAATAT-GATATG-A-TAAAGAATATAAT-
1 AATAATAATATAATAAAATATAG-TATGTAGTAAA-AATA-AATA
92667107 AATAATAATATAATAA
1 AATAATAATATAATAA
92667123 GTATTTTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
39 4 0.08
40 11 0.23
41 33 0.69
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (42 bp):
AATAATAATATAATAAAATATAGTATGTAGTAAAAATAAATA
Found at i:92677613 original size:26 final size:26
Alignment explanation
Indices: 92677575--92677628 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
92677565 ATAATAATAC
92677575 TATAATAAATAATACA-AATTTAAAAA
1 TATAATAAATAATA-ATAATTTAAAAA
** *
92677601 TATAATACTTAATAATAATTTCAAAA
1 TATAATAAATAATAATAATTTAAAAA
92677627 TA
1 TA
92677629 GCATTTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (26 bp):
TATAATAAATAATAATAATTTAAAAA
Found at i:92678424 original size:2 final size:2
Alignment explanation
Indices: 92678419--92678443 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
92678409 ACTGTTTACA
92678419 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
92678444 AATCACCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92679878 original size:22 final size:22
Alignment explanation
Indices: 92679850--92679896 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
92679840 TTCCAAGGTA
92679850 TATCCAATTAATGTCGCCAATG
1 TATCCAATTAATGTCGCCAATG
92679872 TATCCAATTAATGTCGCCAATG
1 TATCCAATTAATGTCGCCAATG
92679894 TAT
1 TAT
92679897 ATCTCAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (22 bp):
TATCCAATTAATGTCGCCAATG
Found at i:92680434 original size:2 final size:2
Alignment explanation
Indices: 92680427--92680461 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
92680417 ATAAATGTGC
92680427 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92680462 AGAACTCTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:92684168 original size:158 final size:152
Alignment explanation
Indices: 92683827--92684168 Score: 451
Period size: 158 Copynumber: 2.2 Consensus size: 152
92683817 TATATTTTCT
* *
92683827 AACATTACATTGATATTTTC-TAGCATTTGAGCAAGGGTAGTTTGACACTCAATCCAAATTTAAT
1 AACATTACATTGATATTTTCTTA-CATTTAAGCAAGGGTAGTTTGACAATCAATCCAAATTTAAT
*
92683891 GAAACTAAAAATCAAATAGAAAAATAATGCTTTTGTTTTTTTGAAATGACTGAATATTTGACTTT
65 GAAACTAAAAATCAAATACAAAAATAATGCTTTTGTTTTTTTGAAATGACTGAATATTTGAC-TT
* *
92683956 TCTCTTTCTTTTGATGTAATTTTG
129 TCTCTTTCCTTTCATGTAATTTTG
*
92683980 AACAATTACATTGATATTTT-TTAACATTTAAGCAAGGG-GGTTTGACAATCAATCCAAATTTAA
1 AAC-ATTACATTGATATTTTCTT-ACATTTAAGCAAGGGTAGTTTGACAATCAATCCAAATTT-A
* *
92684043 TGACTAAAAGAAACTAAAAATCAAATACTAAAGTAATGCTTTTG-TTTTTTGAAATGACTGAATA
63 --A-T----GAAACTAAAAATCAAATACAAAAATAATGCTTTTGTTTTTTTGAAATGACTGAATA
*
92684107 TTTGAC-TTCTCTTTCCTTTCATGTCATTTTG
121 TTTGACTTTCTCTTTCCTTTCATGTAATTTTG
92684138 AAACATTACATTGATATTTTCTTACATTTAA
1 -AACATTACATTGATATTTTCTTACATTTAA
92684169 TATATATATT
Statistics
Matches: 167, Mismatches: 9, Indels: 21
0.85 0.05 0.11
Matches are distributed among these distances:
153 24 0.14
154 31 0.19
155 1 0.01
156 1 0.01
157 1 0.01
158 46 0.28
159 5 0.03
160 26 0.16
161 32 0.19
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (152 bp):
AACATTACATTGATATTTTCTTACATTTAAGCAAGGGTAGTTTGACAATCAATCCAAATTTAATG
AAACTAAAAATCAAATACAAAAATAATGCTTTTGTTTTTTTGAAATGACTGAATATTTGACTTTC
TCTTTCCTTTCATGTAATTTTG
Found at i:92686199 original size:24 final size:24
Alignment explanation
Indices: 92686154--92686200 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
92686144 ATTTAGTAGT
*
92686154 ATAATATATTTAGCATTTATTAGC
1 ATAATATATTTAGCATTAATTAGC
92686178 ATAATATATTTTA-CATTAATTAG
1 ATAATATA-TTTAGCATTAATTAG
92686201 AATTAGGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.47
Consensus pattern (24 bp):
ATAATATATTTAGCATTAATTAGC
Found at i:92686339 original size:27 final size:25
Alignment explanation
Indices: 92686295--92686349 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
92686285 TTCCTCTCCC
92686295 CGTGATTTTTCTCGAAAGAGTTTCAA
1 CGTGATTTTTCTCGAAAG-GTTTCAA
* * *
92686321 CGTGGTTTTTCTTGAAAAGGTTTCCA
1 CGTGATTTTTCTCG-AAAGGTTTCAA
92686347 CGT
1 CGT
92686350 AAAACCTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (25 bp):
CGTGATTTTTCTCGAAAGGTTTCAA
Found at i:92686431 original size:2 final size:2
Alignment explanation
Indices: 92686424--92686461 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
92686414 TCTTATGTCA
92686424 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92686462 GAAAAACGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92686604 original size:20 final size:21
Alignment explanation
Indices: 92686570--92686619 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
92686560 TGTCACTAAA
*
92686570 TAATCAAATTAAATTTATTTT
1 TAATCAAATTAAATTAATTTT
92686591 TAATCAAA-TAAATTAATTTT
1 TAATCAAATTAAATTAATTTT
*
92686611 TGA-CAAATT
1 TAATCAAATT
92686620 TGGATGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 4 0.15
20 14 0.54
21 8 0.31
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (21 bp):
TAATCAAATTAAATTAATTTT
Found at i:92686711 original size:12 final size:12
Alignment explanation
Indices: 92686694--92686726 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
92686684 TTCCCTGTAA
92686694 AATAGTAAAAAT
1 AATAGTAAAAAT
92686706 AATAGTAAAAAT
1 AATAGTAAAAAT
92686718 AATAGTAAA
1 AATAGTAAA
92686727 GGCGAAGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (12 bp):
AATAGTAAAAAT
Found at i:92687825 original size:13 final size:13
Alignment explanation
Indices: 92687809--92687833 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92687799 GAAATTTTTG
92687809 GCTTTTCAAAAGT
1 GCTTTTCAAAAGT
92687822 GCTTTTCAAAAG
1 GCTTTTCAAAAG
92687834 CACTTCTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GCTTTTCAAAAGT
Found at i:92688123 original size:30 final size:30
Alignment explanation
Indices: 92688084--92688140 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
92688074 TTTTATAAGT
92688084 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
92688114 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
92688141 AACAACAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:92694159 original size:14 final size:16
Alignment explanation
Indices: 92694140--92694171 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92694130 CATAAAGTGC
92694140 AATAAA-CC-ACAATT
1 AATAAATCCAACAATT
92694154 AATAAATCCAACAATT
1 AATAAATCCAACAATT
92694170 AA
1 AA
92694172 ATACAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 2 0.12
16 8 0.50
ACGTcount: A:0.59, C:0.19, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAAATCCAACAATT
Found at i:92702186 original size:18 final size:18
Alignment explanation
Indices: 92702165--92702240 Score: 80
Period size: 18 Copynumber: 4.2 Consensus size: 18
92702155 TGAACAGTAT
*
92702165 CGTATTCGTAAATAGTGC
1 CGTATACGTAAATAGTGC
*
92702183 CGTATACGTAAATAGTAC
1 CGTATACGTAAATAGTGC
* *
92702201 TGTATACGTGAATAGTGC
1 CGTATACGTAAATAGTGC
** * *
92702219 TATATACGTGAATAGTAC
1 CGTATACGTAAATAGTGC
92702237 CGTA
1 CGTA
92702241 AACGGTCGTA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (18 bp):
CGTATACGTAAATAGTGC
Found at i:92702215 original size:36 final size:37
Alignment explanation
Indices: 92702148--92702240 Score: 111
Period size: 36 Copynumber: 2.6 Consensus size: 37
92702138 CCCAACTACT
* *
92702148 GTATACGTGAACAGTA-TCGTATTCGTAAATAGTGCC
1 GTATACGTGAATAGTACTCGTATACGTAAATAGTGCC
* * *
92702184 GTATACGTAAATAGTACT-GTATACGTGAATAGTGCT
1 GTATACGTGAATAGTACTCGTATACGTAAATAGTGCC
*
92702220 ATATACGTGAATAGTAC-CGTA
1 GTATACGTGAATAGTACTCGTA
92702241 AACGGTCGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
36 47 0.98
37 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (37 bp):
GTATACGTGAATAGTACTCGTATACGTAAATAGTGCC
Done.