Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 315 of 335
Found at i:92940424 original size:18 final size:19
Alignment explanation
Indices: 92940401--92940445 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
92940391 TAATATATAG
92940401 ATAAAAATG-CGTAATAAT
1 ATAAAAATGACGTAATAAT
*
92940419 ATAAAAATGACTTAATAAT
1 ATAAAAATGACGTAATAAT
*
92940438 ATATAAAT
1 ATAAAAAT
92940446 AATTACAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.31
Consensus pattern (19 bp):
ATAAAAATGACGTAATAAT
Found at i:92940437 original size:22 final size:20
Alignment explanation
Indices: 92940412--92940467 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
92940402 TAAAAATGCG
92940412 TAATAATATAAAAATGACTTAA
1 TAATAATATAAAAATGAC--AA
*
92940434 TAAT-ATATAAATAATTACAA
1 TAATAATATAAA-AATGACAA
92940454 TATATAATATAAAA
1 TA-ATAATATAAAA
92940468 GCCTATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 4 0.13
21 10 0.33
22 16 0.53
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (20 bp):
TAATAATATAAAAATGACAA
Found at i:92940495 original size:3 final size:3
Alignment explanation
Indices: 92940481--92940614 Score: 73
Period size: 3 Copynumber: 43.0 Consensus size: 3
92940471 TATATATATA
92940481 AAT AAT ATAT AAT AAAT AAT AA- ACAT -AT AAT -AT AAT AAT AAT AAT
1 AAT AAT A-AT AAT -AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * ** *
92940526 ATAT AAAT AAT GAT GAT AA- AAT AAT AAT AACT CGT GAAA AAT AAT ATAT
1 A-AT -AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT -AAT AAT AAT A-AT
*
92940575 AAT AAAT AAT AAT AAT -AT AAAT AAT GTAT AAT AA- AAT AAT
1 AAT -AAT AAT AAT AAT AAT -AAT AAT -AAT AAT AAT AAT AAT
92940615 TTTATAATAT
Statistics
Matches: 104, Mismatches: 10, Indels: 34
0.70 0.07 0.23
Matches are distributed among these distances:
2 11 0.11
3 71 0.68
4 21 0.20
5 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:92940554 original size:20 final size:21
Alignment explanation
Indices: 92940480--92940614 Score: 79
Period size: 22 Copynumber: 6.3 Consensus size: 21
92940470 CTATATATAT
*
92940480 AAATAATATATAATAAATAATA
1 AAATAATA-ATAATAGATAATA
92940502 AACAT-ATAAT-ATA-ATAATA
1 AA-ATAATAATAATAGATAATA
*
92940521 ATAATATATAAATAAT-GATGATA
1 A-AATA-AT-AATAATAGATAATA
* *
92940544 AAATAATAATAACTCG-TGA-A
1 AAATAATAATAA-TAGATAATA
*
92940564 AAATAATATATAATAAATAATA
1 AAATAATA-ATAATAGATAATA
92940586 ATAAT-ATAAATAAT-GTATAATA
1 A-AATAAT-AATAATAG-ATAATA
92940608 AAATAAT
1 AAATAAT
92940615 TTTATAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 32
0.71 0.04 0.25
Matches are distributed among these distances:
19 9 0.10
20 19 0.21
21 19 0.21
22 31 0.34
23 14 0.15
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (21 bp):
AAATAATAATAATAGATAATA
Found at i:92940555 original size:34 final size:33
Alignment explanation
Indices: 92940481--92940633 Score: 106
Period size: 34 Copynumber: 4.7 Consensus size: 33
92940471 TATATATATA
* ** *
92940481 AATAATATATAATAAAT-AATAAACATATAATAT
1 AATAATA-ATAATATATAAATAATGATATAAAAT
92940514 AATAATAATAATATATAAATAATGATGATAAAAT
1 AATAATAATAATATATAAATAATGAT-ATAAAAT
** *
92940548 AATAATAACTCGTGA-A-AAATAAT-ATATAATA-
1 AATAATAA-TAAT-ATATAAATAATGATATAAAAT
92940579 AATAATAAT-A-ATATAAATAATGTATAATAAAAT
1 AATAATAATAATATATAAATAATG-AT-ATAAAAT
* *
92940612 AAT-TTTATAATATATAATATAA
1 AATAATAATAATATATAA-ATAA
92940634 AAAAAAGGTT
Statistics
Matches: 96, Mismatches: 11, Indels: 24
0.73 0.08 0.18
Matches are distributed among these distances:
27 1 0.01
28 1 0.01
29 7 0.07
30 1 0.01
31 10 0.10
32 21 0.22
33 20 0.21
34 27 0.28
35 7 0.07
36 1 0.01
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (33 bp):
AATAATAATAATATATAAATAATGATATAAAAT
Found at i:92948329 original size:21 final size:21
Alignment explanation
Indices: 92948288--92948329 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
92948278 AAGAAAGGAA
* **
92948288 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
92948309 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
92948330 GGTTATCACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:92950710 original size:47 final size:47
Alignment explanation
Indices: 92950659--92950805 Score: 222
Period size: 47 Copynumber: 3.1 Consensus size: 47
92950649 TTAGGATTTT
92950659 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
92950706 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATTGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
92950753 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
92950800 ATGTGA
1 ATGTGA
92950806 AATATGTATG
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:92950835 original size:48 final size:48
Alignment explanation
Indices: 92950775--92950963 Score: 281
Period size: 48 Copynumber: 3.8 Consensus size: 48
92950765 TGAACATGCA
92950775 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
92950823 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
92950871 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG----A-A-ATATGTATGAGATATG
*
92950925 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
92950964 GGCGATGTGC
Statistics
Matches: 128, Mismatches: 5, Indels: 16
0.86 0.03 0.11
Matches are distributed among these distances:
47 1 0.01
48 81 0.63
49 1 0.01
50 1 0.01
52 1 0.01
53 1 0.01
54 41 0.32
55 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:92950955 original size:102 final size:96
Alignment explanation
Indices: 92950776--92950963 Score: 288
Period size: 102 Copynumber: 1.9 Consensus size: 96
92950766 GAACATGCAT
*
92950776 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
92950841 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
92950872 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATATGAGATATGTATATGTGGTA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG----A-A-ATATATATGAGATATGTATATGTGGTA
*
92950936 AAGCCGAATGGCTAGTGTGAAATATGTA
59 AAGCCGAATGGCTAATGTGAAATATGTA
92950964 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
100 1 0.01
101 1 0.01
102 53 0.64
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:92951217 original size:37 final size:37
Alignment explanation
Indices: 92951109--92951217 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
92951099 GGAAATATAT
*
92951109 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
92951146 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
92951183 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
92951218 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:92952806 original size:40 final size:40
Alignment explanation
Indices: 92952483--92952794 Score: 570
Period size: 40 Copynumber: 7.8 Consensus size: 40
92952473 GAGAATTGAG
92952483 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
92952523 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
92952563 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
92952603 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
92952643 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
92952683 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
92952723 AGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
92952763 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
92952795 ATCATGCTGG
Statistics
Matches: 264, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 264 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:92954600 original size:21 final size:21
Alignment explanation
Indices: 92954559--92954600 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
92954549 AAGAAAGGAA
* **
92954559 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
92954580 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
92954601 GTTATCACCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:92956972 original size:46 final size:46
Alignment explanation
Indices: 92956919--92957062 Score: 218
Period size: 46 Copynumber: 3.1 Consensus size: 46
92956909 TTAGGATTTT
92956919 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCA
* * *
92956965 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCA
* * *
92957011 ATGTG-TGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC-A
92957057 ATGTGA
1 ATGTGA
92957063 AATATGTATG
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
45 33 0.38
46 54 0.62
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28
Consensus pattern (46 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCA
Found at i:92957014 original size:23 final size:22
Alignment explanation
Indices: 92956936--92957018 Score: 62
Period size: 23 Copynumber: 3.6 Consensus size: 22
92956926 GAATGTGAAC
*
92956936 ATGCATATATGTGATAAGGCCGA
1 ATGCA-ATGTGTGATAAGGCCGA
* * *
92956959 ATGGCAATGTGATGA-ATGTG-AGC
1 AT-GCAATGTG-TGATAAG-GCCGA
92956982 ATGCATATGTGTGATAAGGCCGA
1 ATGCA-ATGTGTGATAAGGCCGA
92957005 ATGTCAATGTGTGA
1 ATG-CAATGTGTGA
92957019 ATATGAACAT
Statistics
Matches: 46, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
22 7 0.15
23 30 0.65
24 9 0.20
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGCAATGTGTGATAAGGCCGA
Found at i:92957093 original size:48 final size:48
Alignment explanation
Indices: 92957032--92957217 Score: 286
Period size: 48 Copynumber: 3.8 Consensus size: 48
92957022 TGAACATGCA
92957032 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
92957080 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT-
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
92957127 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
*
92957179 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
92957218 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 5, Indels: 14
0.87 0.03 0.10
Matches are distributed among these distances:
46 1 0.01
47 27 0.21
48 53 0.42
49 2 0.02
50 2 0.02
51 14 0.11
52 26 0.21
53 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:92957200 original size:99 final size:95
Alignment explanation
Indices: 92957033--92957217 Score: 300
Period size: 99 Copynumber: 1.9 Consensus size: 95
92957023 GAACATGCAT
*
92957033 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
92957098 ATGGCTAATGTGAAATATGTATGAGATATC
66 ATGGCTAATGTGAAATATGTATGAGATATC
92957128 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATATATGAGATATGTATATGTGGTAAA
*
92957192 GCCGAATGGCTAGTGTGAAATATGTA
61 GCCGAATGGCTAATGTGAAATATGTA
92957218 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
94 1 0.01
95 27 0.33
97 1 0.01
98 1 0.01
99 53 0.64
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (95 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATC
Found at i:92957276 original size:99 final size:98
Alignment explanation
Indices: 92957064--92957257 Score: 255
Period size: 99 Copynumber: 2.0 Consensus size: 98
92957054 CTAATGTGAA
* *
92957064 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATCA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATCA
* * **
92957129 TATGTGGTAAAGCCGAATGGTCAATGTGAAATAT
66 TATATGGT-AAGCCGAACGACCAATGTGAAATAT
* * *
92957163 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGC
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATAT-C
* * *
92957228 GTATATTGT-GGCCGAACGACCAATGTGAAA
65 ATATATGGTAAGCCGAACGACCAATGTGAAA
92957258 GGTGTGTATT
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
98 17 0.21
99 58 0.71
100 7 0.09
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.30
Consensus pattern (98 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATCA
TATATGGTAAGCCGAACGACCAATGTGAAATAT
Found at i:92957470 original size:37 final size:37
Alignment explanation
Indices: 92957363--92957470 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
92957353 GGAAATATAT
*
92957363 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
92957399 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
92957436 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
92957471 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 11 0.16
37 57 0.84
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:92963287 original size:21 final size:19
Alignment explanation
Indices: 92963243--92963295 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 19
92963233 CAGCCACGCC
* *
92963243 CACACCTCTATACGCCAGCA
1 CACACC-CTGTACGCCAACA
*
92963263 CACAGCCCTTGTACGCCAACG
1 CACA-CCC-TGTACGCCAACA
92963284 CACACCCTGTAC
1 CACACCCTGTAC
92963296 CTGCGAGCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 5 0.18
20 8 0.29
21 15 0.54
ACGTcount: A:0.26, C:0.45, G:0.13, T:0.15
Consensus pattern (19 bp):
CACACCCTGTACGCCAACA
Found at i:92965631 original size:131 final size:131
Alignment explanation
Indices: 92965397--92965654 Score: 428
Period size: 131 Copynumber: 2.0 Consensus size: 131
92965387 CTATTCATTC
* * * *
92965397 AAAAATTCTTTAAAACGAAGGCAATGTTCATTGTTTGGCAATTCGGGGAATCGTGCCTTATCGTG
1 AAAAATTCTTCAAAACAAAGGCAATGTTCATTGTTTGGAAATTCGGGGAATCGTGCCCTATCGTG
* *
92965462 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTCTT
66 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTT
92965527 T
131 T
* *
92965528 AAAAATTCTTCAAAACAAAGGTAATGTTCGA-TGTTTGGAAATTTGGGGAATCGTGCCCTATCGT
1 AAAAATTCTTCAAAACAAAGGCAATGTTC-ATTGTTTGGAAATTCGGGGAATCGTGCCCTATCGT
92965592 GCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
65 GCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
92965655 TCTCCAAATC
Statistics
Matches: 118, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
131 117 0.99
132 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (131 bp):
AAAAATTCTTCAAAACAAAGGCAATGTTCATTGTTTGGAAATTCGGGGAATCGTGCCCTATCGTG
CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTT
T
Found at i:92966327 original size:16 final size:16
Alignment explanation
Indices: 92966306--92966339 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
92966296 TTAGTATCAC
92966306 ATTCAAATACTTTTAT
1 ATTCAAATACTTTTAT
92966322 ATTCAAATACTTTTAT
1 ATTCAAATACTTTTAT
92966338 AT
1 AT
92966340 ATATTTGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTCAAATACTTTTAT
Found at i:92967397 original size:130 final size:129
Alignment explanation
Indices: 92967127--92967459 Score: 426
Period size: 130 Copynumber: 2.6 Consensus size: 129
92967117 ATAATTATTC
* * *
92967127 GTTTAAAAAA-TCTTTAAAACGAAGGCAATATTCGATGTTTGGAAATTCGG-GCAATCATACCCT
1 GTTTAAAAAATTCTTTAAAA-GAAGGCAATGTTCGATGTTTGGAAATTCGGAG-AATCGTGCCCT
* *
92967190 ATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATTCATTTGGAATTTCACTCA
64 ATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCATTTAGAATTTCACTCA
92967255 T
129 T
* *
92967256 GTTTAAAAAATTCTTTAAAATGAAGGCAACGTTCGATGTTTGGGAATTCGGAGAATCGTGCCCTA
1 GTTTAAAAAATTCTTTAAAA-GAAGGCAATGTTCGATGTTTGGAAATTCGGAGAATCGTGCCCTA
* *
92967321 TCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCTT
65 TCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCATTTAGAATTTCACTCAT
*** * * * * *
92967386 GTTTTCTAAATTC--TAAAACAAGGCAATGTTCAATGTCTAGAAATTC-AAGGAATCGTGCCCTA
1 GTTTAAAAAATTCTTTAAAAGAAGGCAATGTTCGATGTTTGGAAATTCGGA-GAATCGTGCCCTA
92967448 -CTGTGCTGGGTT
65 TC-GTGCTGGGTT
92967460 TCGGTTTTTT
Statistics
Matches: 180, Mismatches: 20, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
126 2 0.01
127 45 0.25
128 5 0.03
129 10 0.06
130 117 0.65
131 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (129 bp):
GTTTAAAAAATTCTTTAAAAGAAGGCAATGTTCGATGTTTGGAAATTCGGAGAATCGTGCCCTAT
CGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCATTTAGAATTTCACTCAT
Found at i:92969464 original size:64 final size:64
Alignment explanation
Indices: 92969391--92969738 Score: 163
Period size: 64 Copynumber: 5.2 Consensus size: 64
92969381 CTGGGCCAGA
*
92969391 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
92969455 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
92969517 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
92969528 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
92969592 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
92969654 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
92969665 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
92969729 GCCCATTTCA
1 GCCCATTTCA
92969739 AAATACATGC
Statistics
Matches: 197, Mismatches: 53, Indels: 68
0.62 0.17 0.21
Matches are distributed among these distances:
63 18 0.09
64 41 0.21
65 10 0.05
66 2 0.01
67 22 0.11
68 10 0.05
69 10 0.05
70 22 0.11
71 2 0.01
72 10 0.05
73 32 0.16
74 18 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:92969603 original size:137 final size:137
Alignment explanation
Indices: 92969357--92969780 Score: 830
Period size: 137 Copynumber: 3.1 Consensus size: 137
92969347 TATTGGGCCT
**
92969357 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
92969422 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
92969487 CATATGC
131 CATATGC
92969494 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
92969559 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
92969624 CATATGC
131 CATATGC
92969631 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
92969696 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
92969761 CATATGC
131 CATATGC
92969768 AAGCCCATTTGGG
1 AAGCCCATTTGGG
92969781 GAGACTACTC
Statistics
Matches: 285, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 285 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:92970065 original size:25 final size:27
Alignment explanation
Indices: 92970028--92970081 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
92970018 TCAAACATGC
92970028 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
92970054 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
92970080 AT
1 AT
92970082 AACAATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:92971727 original size:26 final size:26
Alignment explanation
Indices: 92971565--92971726 Score: 263
Period size: 26 Copynumber: 6.2 Consensus size: 26
92971555 CATGAAATTC
*
92971565 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
92971591 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
92971617 TTATCATGAAACATTTACCTAGCCTA
1 TTATCATGAAACATTTACCTAACCTA
92971643 TTATCATGAAACATTTACCTAAACC-A
1 TTATCATGAAACATTTACCT-AACCTA
92971669 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
92971695 TTATCAAGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
92971721 TTATCA
1 TTATCA
92971727 ATTTGTATCA
Statistics
Matches: 129, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
25 4 0.03
26 122 0.95
27 3 0.02
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:92979135 original size:64 final size:64
Alignment explanation
Indices: 92979062--92979409 Score: 163
Period size: 64 Copynumber: 5.2 Consensus size: 64
92979052 CTGGGCCAGA
*
92979062 GCCCTTTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * ** * ** *
92979126 GCCCATTTCAAAATAC-ATGCAACATTAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-ACTAG--GCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
92979188 ACTGGGCCAGA-
54 A-TGGCCCATAG
* *
92979199 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * ** * ** *
92979263 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT-AAAC-T-AG--GCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
92979325 ACTGGGCCAGA-
54 A-TGGCCCATAG
* *
92979336 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
92979400 GCCCATTTCA
1 GCCCATTTCA
92979410 AAATACATGC
Statistics
Matches: 198, Mismatches: 52, Indels: 68
0.62 0.16 0.21
Matches are distributed among these distances:
63 18 0.09
64 44 0.22
65 9 0.05
66 5 0.03
67 18 0.09
68 10 0.05
69 10 0.05
70 18 0.09
71 4 0.02
72 9 0.05
73 35 0.18
74 18 0.09
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:92979274 original size:137 final size:137
Alignment explanation
Indices: 92979028--92979451 Score: 803
Period size: 137 Copynumber: 3.1 Consensus size: 137
92979018 TATTGGGCCT
** *
92979028 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
92979093 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATTAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
92979158 CATATGC
131 CATATGC
92979165 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
92979230 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
92979295 CATATGC
131 CATATGC
92979302 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
92979367 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
*
92979432 TATATGC
131 CATATGC
92979439 AAGCCCATTTGGG
1 AAGCCCATTTGGG
92979452 GAGACTACTC
Statistics
Matches: 282, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 282 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:92979736 original size:25 final size:27
Alignment explanation
Indices: 92979699--92979752 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
92979689 TCAAACATGC
92979699 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
92979725 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
92979751 AT
1 AT
92979753 AACAATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:92981292 original size:26 final size:26
Alignment explanation
Indices: 92981234--92981393 Score: 218
Period size: 26 Copynumber: 6.2 Consensus size: 26
92981224 CATGAAATTC
92981234 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
92981259 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
92981285 TTATCATGGAACATTTACCTAGCCTA
1 TTATCATGAAACATTTACCTAACCCA
92981311 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
92981337 TTA-CAATGGAACATTTACCTAACCTA
1 TTATC-ATGAAACATTTACCTAACCCA
* * *
92981363 TTATCAAGGAACATTTACCTAA-CTA
1 TTATCATGAAACATTTACCTAACCCA
92981388 TTATCA
1 TTATCA
92981394 ATTTGTATCA
Statistics
Matches: 123, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
25 32 0.26
26 90 0.73
27 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:92981329 original size:52 final size:52
Alignment explanation
Indices: 92981234--92981393 Score: 245
Period size: 52 Copynumber: 3.1 Consensus size: 52
92981224 CATGAAATTC
*
92981234 TTATCATGAAACATTTACCTAACC-ATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
*
92981285 TTATCATGGAACATTTACCTAGCCTATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
* * *
92981337 TTA-CAATGGAACATTTACCTAACCTATTATCAAGGAACATTTACCTAA-CTA
1 TTATC-ATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
92981388 TTATCA
1 TTATCA
92981394 ATTTGTATCA
Statistics
Matches: 100, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
51 29 0.29
52 71 0.71
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.33
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:92981366 original size:78 final size:76
Alignment explanation
Indices: 92981234--92981393 Score: 250
Period size: 78 Copynumber: 2.1 Consensus size: 76
92981224 CATGAAATTC
*
92981234 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCATTATCATGGAACAT
1 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCATTATCAAGGAACAT
*
92981299 TTACCTAGCCTA
66 TTACCTA-ACTA
* *
92981311 TTATCATGAAACATTTACCTAACCCATTA-CAATGGAACATTTACCTAACCTATTATCAAGGAAC
1 TTATCATGAAACATTTACCTAA-CCATTATC-ATGAAACATTTACCTAACCCATTATCAAGGAAC
92981375 ATTTACCTAACTA
64 ATTTACCTAACTA
92981388 TTATCA
1 TTATCA
92981394 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
77 32 0.42
78 45 0.58
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.33
Consensus pattern (76 bp):
TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCATTATCAAGGAACAT
TTACCTAACTA
Found at i:92982152 original size:21 final size:21
Alignment explanation
Indices: 92982126--92982170 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
92982116 TTTATGAGAA
*
92982126 TTAAAATATAAAAATAAAATT
1 TTAAAAGATAAAAATAAAATT
* * *
92982147 TTAAAAGATTAAATTATAATT
1 TTAAAAGATAAAAATAAAATT
92982168 TTA
1 TTA
92982171 TTAATTTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
TTAAAAGATAAAAATAAAATT
Found at i:92987750 original size:20 final size:20
Alignment explanation
Indices: 92987725--92987767 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
92987715 AACAGTATTC
92987725 TTATCCTGAATTTTAGGATT
1 TTATCCTGAATTTTAGGATT
*
92987745 TTATCCTGAATTTTAGTATT
1 TTATCCTGAATTTTAGGATT
92987765 TTA
1 TTA
92987768 ATTTGGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (20 bp):
TTATCCTGAATTTTAGGATT
Found at i:92987810 original size:20 final size:20
Alignment explanation
Indices: 92987785--92987834 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
92987775 TTTGATTTTT
92987785 TTCAGGATAAAATCCTGAAA
1 TTCAGGATAAAATCCTGAAA
92987805 TTCAGGATAAAATCCTGAAA
1 TTCAGGATAAAATCCTGAAA
*
92987825 TTTAGGATAA
1 TTCAGGATAA
92987835 GAGTACTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (20 bp):
TTCAGGATAAAATCCTGAAA
Found at i:92989032 original size:85 final size:85
Alignment explanation
Indices: 92988896--92989058 Score: 299
Period size: 85 Copynumber: 1.9 Consensus size: 85
92988886 TTTCATTGGC
* *
92988896 ATCAGAGTTGTGCAGCGATAGCGTGGTGATCAGTGTGAATGAGAAAATTTTAAATTTGGTGTTTA
1 ATCAGAGTTGTGCAGCGATAGCGTGGTGATAAGTGTGAATGAGAAAATTTTAAATTAGGTGTTTA
92988961 AGTATATGGTGTGCATTGTA
66 AGTATATGGTGTGCATTGTA
*
92988981 ATCAGAGTTGTGCAGCGATAGCGTGGTGATAAGTGTGAATGAGGAAATTTTAAATTAGGTGTTTA
1 ATCAGAGTTGTGCAGCGATAGCGTGGTGATAAGTGTGAATGAGAAAATTTTAAATTAGGTGTTTA
92989046 AGTATATGGTGTG
66 AGTATATGGTGTG
92989059 ACAACGGGAA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 75 1.00
ACGTcount: A:0.29, C:0.06, G:0.31, T:0.34
Consensus pattern (85 bp):
ATCAGAGTTGTGCAGCGATAGCGTGGTGATAAGTGTGAATGAGAAAATTTTAAATTAGGTGTTTA
AGTATATGGTGTGCATTGTA
Found at i:92990318 original size:11 final size:11
Alignment explanation
Indices: 92990277--92990324 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
92990267 ATTAGATAAA
92990277 TATTATTTTAT
1 TATTATTTTAT
* *
92990288 TAATACTTTAAT
1 TATTA-TTTTAT
*
92990300 AATATATTTTAT
1 TAT-TATTTTAT
92990312 TATTATTTTAT
1 TATTATTTTAT
92990323 TA
1 TA
92990325 GTATATAAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
11 14 0.48
12 13 0.45
13 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:92992460 original size:46 final size:46
Alignment explanation
Indices: 92992404--92992621 Score: 321
Period size: 46 Copynumber: 4.7 Consensus size: 46
92992394 AGTGTGCTCT
*
92992404 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
92992450 CTGATCTGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
92992496 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
92992542 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
92992588 ATGATA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
92992622 CACTATTGCA
Statistics
Matches: 156, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 155 0.99
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:92992937 original size:23 final size:25
Alignment explanation
Indices: 92992892--92992938 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
92992882 AATAAATATA
*
92992892 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
92992917 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
92992939 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:92993266 original size:16 final size:16
Alignment explanation
Indices: 92993245--92993317 Score: 65
Period size: 16 Copynumber: 4.4 Consensus size: 16
92993235 AAGCCCTCCC
92993245 AAAAAAACCTAACCCA
1 AAAAAAACCTAACCCA
*** ***
92993261 AAAAAAAAAAAAAGAA
1 AAAAAAACCTAACCCA
*
92993277 AAAGAAAAACCTACCCCA
1 AAA--AAAACCTAACCCA
92993295 AAAAAAACCTAACCCA
1 AAAAAAACCTAACCCA
92993311 AAAAAAA
1 AAAAAAA
92993318 AAAGAAGAAA
Statistics
Matches: 41, Mismatches: 14, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
16 32 0.78
18 9 0.22
ACGTcount: A:0.71, C:0.22, G:0.03, T:0.04
Consensus pattern (16 bp):
AAAAAAACCTAACCCA
Found at i:92993315 original size:51 final size:51
Alignment explanation
Indices: 92993245--92993352 Score: 182
Period size: 50 Copynumber: 2.1 Consensus size: 51
92993235 AAGCCCTCCC
* *
92993245 AAAAAAACCTAACCCAAAAAAAAAAAAAAG-AAAAAGAAAAACCTACCCCA
1 AAAAAAACCTAACCCAAAAAAAAAAAAAAGAAAAAAGAAAAACCTAACCAA
*
92993295 AAAAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAGAAAAACCTAACCAA
1 AAAAAAACCTAACCCAAAAAAAAAAAAAAGAAAAAAGAAAAACCTAACCAA
92993346 AAAAAAA
1 AAAAAAA
92993353 GATAAAAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
50 29 0.54
51 25 0.46
ACGTcount: A:0.73, C:0.19, G:0.05, T:0.04
Consensus pattern (51 bp):
AAAAAAACCTAACCCAAAAAAAAAAAAAAGAAAAAAGAAAAACCTAACCAA
Found at i:92993875 original size:28 final size:29
Alignment explanation
Indices: 92993820--92993875 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
92993810 CTCTCTTTTT
*
92993820 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTTCGTATTTAACTTAGA
*
92993849 TTTCATATTA-TTTT-GTATTTAATTTAG
1 TTTCAT-TTATTTTTCGTATTTAACTTAG
92993876 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 11 0.46
29 10 0.42
30 3 0.12
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.61
Consensus pattern (29 bp):
TTTCATTTATTTTTCGTATTTAACTTAGA
Found at i:92994138 original size:11 final size:11
Alignment explanation
Indices: 92994120--92994149 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
92994110 GTGTATATTG
92994120 TATATATTATA
1 TATATATTATA
*
92994131 TTTATATTATA
1 TATATATTATA
92994142 TATATATT
1 TATATATT
92994150 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:92998363 original size:12 final size:12
Alignment explanation
Indices: 92998346--92998381 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
92998336 AACATTTTGA
92998346 CATTCATGCATT
1 CATTCATGCATT
92998358 CATTCATGCATT
1 CATTCATGCATT
*
92998370 CATTCATACATT
1 CATTCATGCATT
92998382 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:93009748 original size:26 final size:25
Alignment explanation
Indices: 93009705--93009812 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 25
93009695 TGATACAAAT
93009705 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
93009730 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
*
93009756 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
93009782 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCA
93009807 TGATAA
1 TGATAA
93009813 GAATTTCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
25 33 0.41
26 45 0.56
27 2 0.03
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:93015546 original size:25 final size:26
Alignment explanation
Indices: 93015452--93015560 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
93015442 TGATACAAAT
93015452 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
93015478 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93015504 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93015530 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93015555 TGATAA
1 TGATAA
93015561 GAATTCATGT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 24 0.31
26 54 0.69
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93017129 original size:21 final size:20
Alignment explanation
Indices: 93017103--93017145 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
93017093 CATGTTTGAC
93017103 TGTTGTTATT-TACTGCATGCA
1 TGTTGTTATTAT-CTG-ATGCA
93017124 TGTTGTTATTATCTGATGCA
1 TGTTGTTATTATCTGATGCA
93017144 TG
1 TG
93017146 GGATTGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 13 0.62
22 1 0.05
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.49
Consensus pattern (20 bp):
TGTTGTTATTATCTGATGCA
Found at i:93022258 original size:20 final size:20
Alignment explanation
Indices: 93022218--93022257 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
93022208 TGTCACTATA
*
93022218 TAATCAAATTAAATTTATTT
1 TAATCAAATTAAATTCATTT
93022238 TAATCAAA-TAAATTCATTT
1 TAATCAAATTAAATTCATTT
93022257 T
1 T
93022258 TGAAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATCAAATTAAATTCATTT
Found at i:93023777 original size:26 final size:26
Alignment explanation
Indices: 93023741--93023794 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
93023731 TTTTATTCTA
*
93023741 TATATATTATTAATTCTATGTTGCTT
1 TATATATTATTAATTCTATGTTACTT
93023767 TATATATTATTAATTCTATGTTACTT
1 TATATATTATTAATTCTATGTTACTT
93023793 TA
1 TA
93023795 CATACATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (26 bp):
TATATATTATTAATTCTATGTTACTT
Found at i:93024777 original size:128 final size:128
Alignment explanation
Indices: 93024546--93024778 Score: 340
Period size: 128 Copynumber: 1.8 Consensus size: 128
93024536 ATTTTGAACC
*
93024546 AACTTTAAAACAAAGGCGATGTTTGATGTTTGGAAATTCAGAAAATTGTGCCCTAACGTGCTGGG
1 AACTTTAAAACAAAGGCGATATTTGATGTTTGGAAATTCAGAAAATTGTGCCCTAACGTGCTGGG
* ** * ** **
93024611 TTTCGATTTTCTGTTTATCCAAATAATTAAATGTCCCTTTAAAACTTCGTCCGCATTTTCTAA
66 TTTCAATTTTCCATTTATACAAATAACCAAATACCCCTTTAAAACTTCGTCCGCATTTTCTAA
* *
93024674 AACTTTAAAACAAAGGCGATATTTGATGTTTGGAAATTCGGGAAATTGTGCCCTAACGTGCTGGG
1 AACTTTAAAACAAAGGCGATATTTGATGTTTGGAAATTCAGAAAATTGTGCCCTAACGTGCTGGG
* * *
93024739 TTTCAATTTTCCATTTGTATAAATAACCGAATACCCCTTT
66 TTTCAATTTTCCATTTATACAAATAACCAAATACCCCTTT
93024779 TAATTCCGTC
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
128 91 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (128 bp):
AACTTTAAAACAAAGGCGATATTTGATGTTTGGAAATTCAGAAAATTGTGCCCTAACGTGCTGGG
TTTCAATTTTCCATTTATACAAATAACCAAATACCCCTTTAAAACTTCGTCCGCATTTTCTAA
Found at i:93025315 original size:19 final size:19
Alignment explanation
Indices: 93025291--93025352 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
93025281 AATTTTTAAG
93025291 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
93025310 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
93025329 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
93025350 GAT
1 GAT
93025353 CTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:93029274 original size:15 final size:14
Alignment explanation
Indices: 93029249--93029297 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
93029239 GTTTATTTAC
*
93029249 TTATTACTTTATTA
1 TTATTAATTTATTA
*
93029263 TTAATTAATTTAATA
1 TT-ATTAATTTATTA
93029278 TTATTAA-TTATTA
1 TTATTAATTTATTA
93029291 TCTATTA
1 T-TATTA
93029298 TTATTATCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 6 0.20
14 12 0.40
15 12 0.40
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTAATTTATTA
Found at i:93029291 original size:10 final size:10
Alignment explanation
Indices: 93029257--93029303 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
93029247 ACTTATTACT
93029257 TTATTATTAA
1 TTATTATTAA
*
93029267 TTAAT-TTAA
1 TTATTATTAA
93029276 -TATTATTAA
1 TTATTATTAA
93029285 TTATTATCT-A
1 TTATTAT-TAA
93029295 TTATTATTA
1 TTATTATTA
93029304 TCCTTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
8 3 0.10
9 9 0.29
10 18 0.58
11 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (10 bp):
TTATTATTAA
Found at i:93029302 original size:13 final size:14
Alignment explanation
Indices: 93029257--93029305 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
93029247 ACTTATTACT
93029257 TTATTAT-TAATTAA
1 TTATTATCT-ATTAA
*
93029271 TTTAATAT-TATTAA
1 -TTATTATCTATTAA
93029285 TTATTATCTATT-A
1 TTATTATCTATTAA
93029298 TTATTATC
1 TTATTATC
93029306 CTTATTAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 15 0.48
14 9 0.29
15 7 0.23
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTATCTATTAA
Found at i:93029401 original size:3 final size:3
Alignment explanation
Indices: 93029395--93029514 Score: 125
Period size: 3 Copynumber: 39.7 Consensus size: 3
93029385 TTGTTGTGTC
93029395 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
93029443 ACT ATT ATT TTT ATT ATT ATT ACT ACT ACT ATC ACT ATAT AGTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T A-TT ATT
* * *
93029490 ATT ACT ATC A-T ATT ATC ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
93029515 ACTATTTTTA
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
2 1 0.01
3 92 0.94
4 4 0.04
5 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:93029499 original size:23 final size:22
Alignment explanation
Indices: 93029454--93029519 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 22
93029444 CTATTATTTT
* *
93029454 TATTATTATTACTACTACTATCA
1 TATTATCATTATTA-TACTATCA
93029477 CTA-TAT-AGTTATTATTACTATCA
1 -TATTATCA-TTATTA-TACTATCA
93029500 TATTATCATTATTATACTAT
1 TATTATCATTATTATACTAT
93029520 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
22 9 0.24
23 25 0.68
24 3 0.08
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.50
Consensus pattern (22 bp):
TATTATCATTATTATACTATCA
Found at i:93032941 original size:27 final size:26
Alignment explanation
Indices: 93032904--93033018 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
93032894 AGCATGGCTG
* *
93032904 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
93032930 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
93032958 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
93032985 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
93033012 CCAGAAC
1 CCAGAAC
93033019 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:93032967 original size:54 final size:54
Alignment explanation
Indices: 93032904--93033018 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
93032894 AGCATGGCTG
*
93032904 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
93032958 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
93033012 CCAGAAC
1 CCAGAAC
93033019 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:93034663 original size:26 final size:26
Alignment explanation
Indices: 93034627--93034736 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
93034617 CATGAAATTC
93034627 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
93034653 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
93034679 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
93034705 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
93034731 TTATCA
1 TTATCA
93034737 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:93050353 original size:19 final size:19
Alignment explanation
Indices: 93050329--93050488 Score: 223
Period size: 19 Copynumber: 8.9 Consensus size: 19
93050319 AATCATATCT
*
93050329 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
*
93050348 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
93050367 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
93050384 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
93050402 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
93050419 --TAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
93050435 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
93050452 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
93050471 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
93050489 TGAAGATTAT
Statistics
Matches: 129, Mismatches: 2, Indels: 20
0.85 0.01 0.13
Matches are distributed among these distances:
15 8 0.06
16 6 0.05
17 39 0.30
18 24 0.19
19 52 0.40
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:93050446 original size:68 final size:72
Alignment explanation
Indices: 93050329--93050488 Score: 247
Period size: 68 Copynumber: 2.2 Consensus size: 72
93050319 AATCATATCT
*
93050329 TCTAAGATTGTATATCATATCTAAGATTGTATATCATATCTAAGATTGTATCATATCTAAGATTG
1 TCTAAGATTG-ATATCATA-CTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTG
*
93050394 CA-ATCATA
64 CATATCACA
93050402 TCTAAGATTG-TATCATA-TAAGATTGCA-ATCATATCTAAGATTGTATCATATCTAAGATTGCA
1 TCTAAGATTGATATCATACTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCA
93050464 TATCACA
66 TATCACA
93050471 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
93050489 TGAAGATTAT
Statistics
Matches: 82, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
68 35 0.43
69 24 0.29
71 13 0.16
73 10 0.12
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (72 bp):
TCTAAGATTGATATCATACTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCA
TATCACA
Found at i:93051528 original size:208 final size:207
Alignment explanation
Indices: 93050890--93051598 Score: 1186
Period size: 207 Copynumber: 3.4 Consensus size: 207
93050880 GCTTCTTCAG
* * *
93050890 TTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAA
1 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAA
* * *
93050955 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATC-
66 GCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT
* * * ** * *
93051019 TGCTTCAATTTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATATGGAGAC
131 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGAC
93051084 GCCAAACTTTGA
196 GCCAAACTTTGA
*
93051096 TTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAA
1 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAA
*
93051161 GCCAAATCAAATATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT
66 GCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT
* *
93051226 TACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGAT
131 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGAC
*
93051291 GCCAAACTTCGA
196 GCCAAACTTTGA
93051303 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAA
1 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAA
93051368 GCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCCAAACCATCTTGGATC
66 GCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATG-CCAAACCATCTTGGATC
*
93051433 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATACGGAGA
130 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGA
*
93051498 CGCCAAAATTTGA
195 CGCCAAACTTTGA
* * *
93051511 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCATCATAAGCACGTGAAA
1 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAA
*
93051576 GCCAAATCAGCTATGTCTTCGAT
66 GCCAAATCAACTATGTCTTCGAT
93051599 CTGCTCTCCG
Statistics
Matches: 472, Mismatches: 29, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
206 121 0.26
207 177 0.38
208 174 0.37
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (207 bp):
TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAA
GCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT
TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGAC
GCCAAACTTTGA
Found at i:93051884 original size:87 final size:83
Alignment explanation
Indices: 93051727--93052013 Score: 308
Period size: 84 Copynumber: 3.4 Consensus size: 83
93051717 CTATACTTTA
* * *
93051727 ACCTATTACCCTACTACTTAGGGGGTTAAGGCGCA-TCTTCGATCTGTTCTACTAATGCTTAGGG
1 ACCTGTTACCCTACTACTTAGGGGATTAAGGCG-AGTCTTCGATCTGTTCTACTACTGCTTAGGG
**
93051791 AGATAAGATCCACAATTTT
65 AGATAAGATCTGCAATTTT
* * * *
93051810 GACTTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTTGATCTGTTCTGCTACTGCTTA
1 -ACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTC-T--TCGATCTGTTCTACTACTGCTTA
* *
93051875 GGGAGATAAGATCTGTAATTGT
62 GGGAGATAAGATCTGCAATTTT
* * * * * *
93051897 AGCCTGTTAACCTACTGCATAGAGGG-TTAAGGCGAGTCTTCGATCTGCTCCACTACTACTTAGG
1 A-CCTGTTACCCTACTACTTAG-GGGATTAAGGCGAGTCTTCGATCTGTTCTACTACTGCTTAGG
*
93051961 GAGATAAGATCTGCAAATTTA
64 GAGATAAGATCTGC-AATTTT
**
93051982 ACCTACTACCCTACTACTTAGGGGATTAAGGC
1 ACCTGTTACCCTACTACTTAGGGGATTAAGGC
93052014 ACTGAATTTT
Statistics
Matches: 168, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
83 4 0.02
84 86 0.51
85 6 0.04
86 2 0.01
87 67 0.40
88 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (83 bp):
ACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGTTCTACTACTGCTTAGGGA
GATAAGATCTGCAATTTT
Found at i:93052971 original size:7 final size:7
Alignment explanation
Indices: 93052959--93053028 Score: 56
Period size: 7 Copynumber: 9.6 Consensus size: 7
93052949 GGCCTCTCCA
93052959 TTTTTCTT
1 TTTTTC-T
93052967 TTTTCTCTT
1 TTTT-TC-T
93052976 TTTTTCT
1 TTTTTCT
93052983 TTTTTCT
1 TTTTTCT
93052990 TTTTT-T
1 TTTTTCT
93052996 TCTCTTTCT
1 T-T-TTTCT
*
93053005 CTTTTCT
1 TTTTTCT
93053012 TTTTT-T
1 TTTTTCT
93053018 TCTTTT-T
1 T-TTTTCT
93053025 TTTT
1 TTTT
93053029 GAAATAGAAG
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
6 7 0.13
7 29 0.53
8 10 0.18
9 9 0.16
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:93052979 original size:17 final size:16
Alignment explanation
Indices: 93052959--93053027 Score: 88
Period size: 16 Copynumber: 4.3 Consensus size: 16
93052949 GGCCTCTCCA
93052959 TTTTTCTTTTTTCTCTT
1 TTTTTCTTTTTTCT-TT
93052976 TTTTTCTTTTTTCTTT
1 TTTTTCTTTTTTCTTT
*
93052992 TTTTTC-TCTTTCTCTT
1 TTTTTCTTTTTTCT-TT
*
93053008 TTCTT-TTTTTTCTTT
1 TTTTTCTTTTTTCTTT
93053023 TTTTT
1 TTTTT
93053028 TGAAATAGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
15 12 0.26
16 20 0.43
17 14 0.30
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTTTCTTT
Found at i:93053028 original size:32 final size:33
Alignment explanation
Indices: 93052959--93053027 Score: 106
Period size: 31 Copynumber: 2.2 Consensus size: 33
93052949 GGCCTCTCCA
* *
93052959 TTTTTCTTTTTTCTCTTTTTTTCTTTTTTCTTT
1 TTTTTCTTCTTTCTCTTTTCTTCTTTTTTCTTT
93052992 TTTTTC-TCTTTCTCTTTTCTT-TTTTTTCTTT
1 TTTTTCTTCTTTCTCTTTTCTTCTTTTTTCTTT
93053023 TTTTT
1 TTTTT
93053028 TGAAATAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 15 0.44
32 13 0.38
33 6 0.18
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (33 bp):
TTTTTCTTCTTTCTCTTTTCTTCTTTTTTCTTT
Found at i:93055587 original size:12 final size:12
Alignment explanation
Indices: 93055570--93055594 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93055560 CCCTCTTCTC
93055570 TCTTTCTCTTTT
1 TCTTTCTCTTTT
93055582 TCTTTCTCTTTT
1 TCTTTCTCTTTT
93055594 T
1 T
93055595 AATAACTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTTTCTCTTTT
Found at i:93058433 original size:30 final size:27
Alignment explanation
Indices: 93058386--93058450 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 27
93058376 AATATATTTT
* *
93058386 TTAAAACAATGAATAATA-TAGAATTTAA
1 TTAAAAAAATGAATAATACTA-AAATT-A
93058414 TTAAAAAAATTGATATAATACTAAAATTA
1 TTAAAAAAA-TGA-ATAATACTAAAATTA
93058443 TTAAAAAA
1 TTAAAAAA
93058451 TAAAATATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.25
29 12 0.38
30 10 0.31
31 2 0.06
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (27 bp):
TTAAAAAAATGAATAATACTAAAATTA
Found at i:93058792 original size:19 final size:19
Alignment explanation
Indices: 93058768--93058858 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
93058758 AATCATATCT
*
93058768 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
93058787 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
93058805 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
93058822 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
93058841 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
93058859 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:93058826 original size:35 final size:37
Alignment explanation
Indices: 93058768--93058858 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
93058758 AATCATATCT
*
93058768 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
93058805 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
93058841 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
93058859 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:93058837 original size:14 final size:15
Alignment explanation
Indices: 93058782--93058837 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
93058772 AGATTGTATA
93058782 TCATATCTAAGATTG
1 TCATATCTAAGATTG
93058797 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
93058815 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
93058832 -CATATC
1 TCATATC
93058838 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:93059014 original size:22 final size:21
Alignment explanation
Indices: 93058975--93059015 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
93058965 TTGGATTTCG
**
93058975 TTTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTTGGACTTATTAT
93058996 TTTTGTTTTTTGGACTTATT
1 TTTT-TTTTTTGGACTTATT
93059016 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.10, C:0.02, G:0.15, T:0.73
Consensus pattern (21 bp):
TTTTTTTTTTGGACTTATTAT
Found at i:93063601 original size:20 final size:20
Alignment explanation
Indices: 93063562--93063717 Score: 178
Period size: 20 Copynumber: 8.1 Consensus size: 20
93063552 ATCAGTATAT
***
93063562 GGCACAAAGCCATGTGTAGC
1 GGCACAAAGCCATCAATAGC
*
93063582 AGCACAAAGCCATCAATAGC
1 GGCACAAAGCCATCAATAGC
*
93063602 GGCAC--A-CCATCAGTAGC
1 GGCACAAAGCCATCAATAGC
* *
93063619 GGCACAAAGCCATCAGTAGT
1 GGCACAAAGCCATCAATAGC
*
93063639 GGCACAAA-CCATCAATAGT
1 GGCACAAAGCCATCAATAGC
*
93063658 GGCACAAAGCCATCAATAGT
1 GGCACAAAGCCATCAATAGC
* *
93063678 AGCACAAA-CCATCAATAGT
1 GGCACAAAGCCATCAATAGC
93063697 GGCACAAAGCCATCAATAGC
1 GGCACAAAGCCATCAATAGC
93063717 G
1 G
93063718 ACACTCAAAC
Statistics
Matches: 120, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
17 15 0.12
18 1 0.01
19 37 0.31
20 67 0.56
ACGTcount: A:0.38, C:0.28, G:0.21, T:0.13
Consensus pattern (20 bp):
GGCACAAAGCCATCAATAGC
Found at i:93063652 original size:19 final size:20
Alignment explanation
Indices: 93063583--93063715 Score: 186
Period size: 20 Copynumber: 6.9 Consensus size: 20
93063573 ATGTGTAGCA
*
93063583 GCACAAAGCCATCAATAGCG
1 GCACAAAGCCATCAATAGTG
* *
93063603 GCAC--A-CCATCAGTAGCG
1 GCACAAAGCCATCAATAGTG
*
93063620 GCACAAAGCCATCAGTAGTG
1 GCACAAAGCCATCAATAGTG
93063640 GCACAAA-CCATCAATAGTG
1 GCACAAAGCCATCAATAGTG
*
93063659 GCACAAAGCCATCAATAGTA
1 GCACAAAGCCATCAATAGTG
93063679 GCACAAA-CCATCAATAGTG
1 GCACAAAGCCATCAATAGTG
93063698 GCACAAAGCCATCAATAG
1 GCACAAAGCCATCAATAG
93063716 CGACACTCAA
Statistics
Matches: 103, Mismatches: 5, Indels: 10
0.87 0.04 0.08
Matches are distributed among these distances:
17 15 0.15
18 1 0.01
19 37 0.36
20 50 0.49
ACGTcount: A:0.40, C:0.28, G:0.19, T:0.14
Consensus pattern (20 bp):
GCACAAAGCCATCAATAGTG
Found at i:93063662 original size:39 final size:39
Alignment explanation
Indices: 93063583--93063715 Score: 207
Period size: 39 Copynumber: 3.5 Consensus size: 39
93063573 ATGTGTAGCA
* * *
93063583 GCACAAAGCCATCAATAGCGGCAC--ACCATCAGTAGCG
1 GCACAAAGCCATCAATAGTGGCACAAACCATCAATAGTG
*
93063620 GCACAAAGCCATCAGTAGTGGCACAAACCATCAATAGTG
1 GCACAAAGCCATCAATAGTGGCACAAACCATCAATAGTG
*
93063659 GCACAAAGCCATCAATAGTAGCACAAACCATCAATAGTG
1 GCACAAAGCCATCAATAGTGGCACAAACCATCAATAGTG
93063698 GCACAAAGCCATCAATAG
1 GCACAAAGCCATCAATAG
93063716 CGACACTCAA
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
37 22 0.25
39 66 0.75
ACGTcount: A:0.40, C:0.28, G:0.19, T:0.14
Consensus pattern (39 bp):
GCACAAAGCCATCAATAGTGGCACAAACCATCAATAGTG
Found at i:93064027 original size:26 final size:28
Alignment explanation
Indices: 93063990--93064043 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
93063980 ATCATAGCAC
*
93063990 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
*
93064017 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
93064044 TTTTGGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTAGAGGGGTA
Found at i:93067627 original size:14 final size:14
Alignment explanation
Indices: 93067608--93067637 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93067598 TTATATCGAG
93067608 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
93067622 ACCAATCCAATTCA
1 ACCAATCCAAATCA
93067636 AC
1 AC
93067638 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:93068400 original size:59 final size:54
Alignment explanation
Indices: 93068269--93068401 Score: 144
Period size: 54 Copynumber: 2.4 Consensus size: 54
93068259 TTGCAGCGGG
* * *
93068269 ATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGTCGGG
1 ATTACCAGTCCAGGCTAAATCCCCTGCAATACAAACTCATAGAGTATGGTCGGA
* *
93068323 ATTACCAGTCTAGGCTAAATCCCCTGCAACTACAATTACTC-TAATGAGCT-TGGATCTGA
1 ATTACCAGTCCAGGCTAAATCCCCTGCAA-TACAA--ACTCAT-A-GAG-TATGG-TCGGA
93068382 ATTACCAGTCCAGGCTAAAT
1 ATTACCAGTCCAGGCTAAAT
93068402 TCAGACCCTA
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
54 28 0.42
55 4 0.06
56 1 0.02
57 5 0.08
58 5 0.08
59 23 0.35
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (54 bp):
ATTACCAGTCCAGGCTAAATCCCCTGCAATACAAACTCATAGAGTATGGTCGGA
Found at i:93073881 original size:16 final size:15
Alignment explanation
Indices: 93073860--93073889 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
93073850 ATATAGATAA
93073860 TAATATTAATAAAATT
1 TAATATTAA-AAAATT
93073876 TAATATTAAAAAAT
1 TAATATTAAAAAAT
93073890 AAAACATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TAATATTAAAAAATT
Found at i:93073908 original size:22 final size:20
Alignment explanation
Indices: 93073867--93073916 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 20
93073857 TAATAATATT
*
93073867 AATAAAATTTAATATTAAAA
1 AATAAAAATTAATATTAAAA
93073887 AATAAAACATTAATAATTAAAA
1 AATAAAA-ATTAAT-ATTAAAA
93073909 AATTAAAA
1 AA-TAAAA
93073917 GTATATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 7 0.27
21 5 0.19
22 9 0.35
23 5 0.19
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
AATAAAAATTAATATTAAAA
Found at i:93074143 original size:16 final size:17
Alignment explanation
Indices: 93074124--93074156 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
93074114 AATTTTATAT
93074124 ATTTTA-ATAGTTATTA
1 ATTTTATATAGTTATTA
*
93074140 ATTTTATATATTTATTA
1 ATTTTATATAGTTATTA
93074157 TACATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
ATTTTATATAGTTATTA
Found at i:93074156 original size:17 final size:17
Alignment explanation
Indices: 93074094--93074156 Score: 51
Period size: 16 Copynumber: 3.8 Consensus size: 17
93074084 CCATTATATA
* * *
93074094 TTATATAATCATTAAAT
1 TTATATATTTATTAATT
*
93074111 TTAAAT-TTTA-TATATT
1 TTATATATTTATTA-ATT
*
93074127 TTA-ATAGTTATTAATT
1 TTATATATTTATTAATT
93074143 TTATATATTTATTA
1 TTATATATTTATTA
93074157 TACATATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
15 4 0.11
16 16 0.44
17 16 0.44
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
TTATATATTTATTAATT
Found at i:93076772 original size:22 final size:23
Alignment explanation
Indices: 93076725--93076771 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
93076715 GATGGCTTAG
93076725 AATAGGTGTTTTGAAGGGAAAAA
1 AATAGGTGTTTTGAAGGGAAAAA
93076748 AATAGGTGTTTTGAAGGGAAAAA
1 AATAGGTGTTTTGAAGGGAAAAA
93076771 A
1 A
93076772 TTCACATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.26
Consensus pattern (23 bp):
AATAGGTGTTTTGAAGGGAAAAA
Found at i:93084745 original size:6 final size:6
Alignment explanation
Indices: 93084734--93084764 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
93084724 TAAAATAATT
*
93084734 ACTTAA ACTTAA ACTTAA AATTAA ACTTAA A
1 ACTTAA ACTTAA ACTTAA ACTTAA ACTTAA A
93084765 ACAAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (6 bp):
ACTTAA
Found at i:93085678 original size:43 final size:43
Alignment explanation
Indices: 93085605--93085756 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 43
93085595 AGACAAGCTG
*
93085605 CCACTAGGCTGTGGATGCGCAACAATTTCACAGATAAAAACTA
1 CCACTAGGCTGTGGATGCACAACAATTTCACAGATAAAAACTA
* * * *
93085648 CCACTAGGCTATGGATGCATAGCGAA-TTCACAGATAAAAACTT
1 CCACTAGGCTGTGGATGCACAAC-AATTTCACAGATAAAAACTA
* * * *
93085691 CCAGTAGGCTGTGGATGCGCAACAAATTT-GCAGAT--AAACTG
1 CCACTAGGCTGTGGATGCACAAC-AATTTCACAGATAAAAACTA
* * *
93085732 CCACTGGGTTGTGGGTGCACAACAA
1 CCACTAGGCTGTGGATGCACAACAA
93085757 ATTTGTAGAT
Statistics
Matches: 89, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
40 2 0.02
41 23 0.26
43 60 0.67
44 4 0.04
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (43 bp):
CCACTAGGCTGTGGATGCACAACAATTTCACAGATAAAAACTA
Found at i:93090875 original size:21 final size:20
Alignment explanation
Indices: 93090851--93090945 Score: 65
Period size: 21 Copynumber: 4.7 Consensus size: 20
93090841 TAAATAACAG
93090851 TATTAGAAATATATAATATAA
1 TATTA-AAATATATAATATAA
* * *
93090872 TATTAGAAGTATA-CATATAG
1 TATTA-AAATATATAATATAA
*
93090892 TAGTATAAAAAATATAACTAGTAA
1 TA-T-TAAAATATATAA-TA-TAA
93090916 TATTAAAATATAT-ATAT-A
1 TATTAAAATATATAATATAA
93090934 TA-T-AAATATATA
1 TATTAAAATATATA
93090946 TTAAAAGACT
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
16 8 0.13
17 1 0.02
18 3 0.05
19 1 0.02
20 9 0.15
21 19 0.32
22 12 0.20
23 3 0.05
24 4 0.07
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (20 bp):
TATTAAAATATATAATATAA
Found at i:93090922 original size:22 final size:21
Alignment explanation
Indices: 93090889--93090929 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
93090879 AGTATACATA
*
93090889 TAGTAGTATAAAAAATATAAC
1 TAGTAATATAAAAAATATAAC
*
93090910 TAGTAATATTAAAATATATA
1 TAGTAATA-TAAAAAATATA
93090930 TATATATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.34
Consensus pattern (21 bp):
TAGTAATATAAAAAATATAAC
Found at i:93091742 original size:14 final size:15
Alignment explanation
Indices: 93091714--93091743 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
93091704 TTTAAAAAAA
93091714 AAAAGAGAGAGAGGG
1 AAAAGAGAGAGAGGG
93091729 AAAAGAGA-AGAGGG
1 AAAAGAGAGAGAGGG
93091743 A
1 A
93091744 GAGAAGGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (15 bp):
AAAAGAGAGAGAGGG
Found at i:93092527 original size:23 final size:23
Alignment explanation
Indices: 93092495--93092539 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
93092485 TCTGGGTTTT
93092495 GGGGTTTGGGTCT-GGTTGTAAA
1 GGGGTTTGGGTCTAGGTTGTAAA
*
93092517 GGGGTATTGGGTCTAGTTTGTAA
1 GGGGT-TTGGGTCTAGGTTGTAA
93092540 TGGGTTAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 8 0.40
24 7 0.35
ACGTcount: A:0.16, C:0.04, G:0.42, T:0.38
Consensus pattern (23 bp):
GGGGTTTGGGTCTAGGTTGTAAA
Found at i:93093051 original size:13 final size:13
Alignment explanation
Indices: 93093033--93093057 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93093023 TTTGAAACAT
93093033 AGAAATTAAAAGC
1 AGAAATTAAAAGC
93093046 AGAAATTAAAAG
1 AGAAATTAAAAG
93093058 GCTCAACTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.16, T:0.16
Consensus pattern (13 bp):
AGAAATTAAAAGC
Found at i:93093188 original size:13 final size:13
Alignment explanation
Indices: 93093155--93093188 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
93093145 ATATGAGTTG
93093155 ATTAAAAACAGAA
1 ATTAAAAACAGAA
* *
93093168 ATTGAAAATAGAA
1 ATTAAAAACAGAA
93093181 ATTAAAAA
1 ATTAAAAA
93093189 GACTCAACTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (13 bp):
ATTAAAAACAGAA
Found at i:93093342 original size:74 final size:70
Alignment explanation
Indices: 93093191--93093440 Score: 257
Period size: 71 Copynumber: 3.5 Consensus size: 70
93093181 ATTAAAAAGA
* * * * *
93093191 CTCAACTCACCTCTCGTAATATGAATTGAATTTTGAAAATAGGATTTGAAAATACCTTAGCGTGC
1 CTCAACTCACCTCTCGCAATATGAGTTG-ATTTTG-AAACAGGAATTGAAATTACCTTAGCGTGC
*
93093256 CACAAGG
64 CACGAGG
*
93093263 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTAACAGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT-GA---AACAGGAATTGAAATTACCTTAGCGT
* *
93093328 GCCCCGACG
62 GCCACGAGG
* * * ** * *
93093337 TTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTTAACGTGTC
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAACAGGAATTGAAATTACCTTAGCGTGCC
**
93093402 TTGAGG
65 ACGAGG
* *
93093408 CTCAACTCACCTATCGCAATATGAGCTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
93093441 CTTGGAAAAC
Statistics
Matches: 148, Mismatches: 25, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
70 4 0.03
71 57 0.39
72 27 0.18
74 56 0.38
75 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (70 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACAGGAATTGAAATTACCTTAGCGTGCCA
CGAGG
Found at i:93093425 original size:145 final size:150
Alignment explanation
Indices: 93093192--93093693 Score: 516
Period size: 160 Copynumber: 3.2 Consensus size: 150
93093182 TTAAAAAGAC
* * * * * *
93093192 TCAACTCACCTCTCGTAATATGAA-TTGAATTTTGAAA-ATAGGATTTGAAAATACCTTAGCGTG
1 TCAACTCACTTCTCGCAATAT-AAGTTGATTTTTGAAACATA--AATTGAAATTACCTTAACGTG
* *** * * *
93093255 CCACAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-A-G-ATT-TAA-CAGGAATTGAA
63 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTAATGAATTAAAAGCAGAAATTGAA
* *
93093315 ATTACCTCAGCGTGCCCCGACGT
128 AATACCTCAGCGTACCCCGACGT
93093338 TCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTTAACGTGTCT
1 TCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTTAACGTGTCT
*
93093403 TGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGA
66 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TT-TT-----A-ATGAATT-AAAAGCAGA
* *
93093468 AATTGAAAATACCTCAGCGTACCCTGAGGT
121 AATTGAAAATACCTCAGCGTACCCCGACGT
*
93093498 TCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTTAACGTGTCT
93093563 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCA-A
66 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TT-TT-----A-ATGAATT-AAAAGCAGA
* * *
93093627 AATTGAAAATACCTCAGCGTACCCTGAGGC
121 AATTGAAAATACCTCAGCGTACCCCGACGT
* **
93093657 TCAACTCACTTCTCGCGATATGGGTTGATTTTTGAAA
1 TCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAA
93093694 AAAACAAAAT
Statistics
Matches: 315, Mismatches: 24, Indels: 21
0.88 0.07 0.06
Matches are distributed among these distances:
145 51 0.16
146 31 0.10
147 5 0.02
148 2 0.01
155 1 0.00
156 1 0.00
157 3 0.01
159 66 0.21
160 155 0.49
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (150 bp):
TCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTTAACGTGTCT
TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTAATGAATTAAAAGCAGAAATTGAAAAT
ACCTCAGCGTACCCCGACGT
Found at i:93093572 original size:160 final size:159
Alignment explanation
Indices: 93093308--93093693 Score: 673
Period size: 160 Copynumber: 2.4 Consensus size: 159
93093298 ATTTAACAGG
* * * *
93093308 AATTGAAATTACCTCAGCGTGCCCCGACGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
*
93093373 AACATAAATTGAAATTACCTTAACGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGCTGAT
93093438 TTTCTTGGAAAACATGAATTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCA-A
93093468 AATTGAAAATACCTCAGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
*
93093533 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGCTGAT
93093598 TTTCTTGGAAAACATGAATTAAAAAGCAA
131 TTTCTTGGAAAACATGAATTAAAAAGCAA
* * **
93093627 AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCGATATGGGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
93093692 AA
66 AA
93093694 AAAACAAAAT
Statistics
Matches: 216, Mismatches: 10, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
159 64 0.30
160 152 0.70
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (159 bp):
AATTGAAAATACCTCAGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAA
Found at i:93093583 original size:71 final size:71
Alignment explanation
Indices: 93093467--93093600 Score: 187
Period size: 71 Copynumber: 1.9 Consensus size: 71
93093457 TAAAAAGCAG
* * * *
93093467 AAATTGAAAATACCTCAGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTACCCTGAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTTG
93093532 AAACAT
66 AAACAT
* ** * *
93093538 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTACCCTGAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTT
93093601 CTTGGAAAAC
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
71 54 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTACCCTGAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTTG
AAACAT
Found at i:93105993 original size:26 final size:26
Alignment explanation
Indices: 93105904--93106037 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
93105894 TGATACAAAT
*
93105904 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93105930 TGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
93105954 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTCA
**
93105980 TGATAATGTATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93106006 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93106032 TGATAA
1 TGATAA
93106038 GAATTTCATG
Statistics
Matches: 100, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
24 11 0.11
25 26 0.26
26 63 0.63
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.40
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:93109252 original size:12 final size:12
Alignment explanation
Indices: 93109235--93109277 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
93109225 ACTCGGGGAA
93109235 GAGGCCGTGGTC
1 GAGGCCGTGGTC
93109247 GAGGCCGTGGTC
1 GAGGCCGTGGTC
93109259 GAGGCCGTGGTC
1 GAGGCCGTGGTC
93109271 GAGGCCG
1 GAGGCCG
93109278 AGGTAGTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.09, C:0.26, G:0.51, T:0.14
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:93114157 original size:26 final size:26
Alignment explanation
Indices: 93114100--93114234 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
93114090 TGATACAAAT
*
93114100 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
93114125 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
93114151 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTCA
**
93114177 TGATAATGTATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93114203 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93114229 TGATAA
1 TGATAA
93114235 GAATTTCATG
Statistics
Matches: 100, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 19 0.19
26 81 0.81
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:93117048 original size:16 final size:15
Alignment explanation
Indices: 93117023--93117053 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
93117013 TAATATGAAC
93117023 ATATACAATATACAT
1 ATATACAATATACAT
93117038 ATATAACAATATACAT
1 ATAT-ACAATATACAT
93117054 GAAATAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (15 bp):
ATATACAATATACAT
Found at i:93117299 original size:21 final size:20
Alignment explanation
Indices: 93117259--93117372 Score: 81
Period size: 21 Copynumber: 5.3 Consensus size: 20
93117249 ACATGCATAT
93117259 ATATATAATA-ACAGTATTAGAA
1 ATATATAATATA-A-TATTA-AA
93117281 ATATATAATATAATATTAGAA
1 ATATATAATATAATATTA-AA
* * *
93117302 GTATA-CATATAGTAGTATAAA
1 ATATATAATATAATA-T-TAAA
*
93117323 AAATATAACTAGTAATATTAAA
1 ATATATAA-TA-TAATATTAAA
93117345 ATATAT-ATATATATATATAAA
1 ATATATAATATA-ATAT-TAAA
93117366 ATATATA
1 ATATATA
93117373 TTAAAAGACT
Statistics
Matches: 75, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
19 2 0.03
20 13 0.17
21 29 0.39
22 23 0.31
23 4 0.05
24 4 0.05
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (20 bp):
ATATATAATATAATATTAAA
Found at i:93117371 original size:13 final size:12
Alignment explanation
Indices: 93117337--93117378 Score: 54
Period size: 10 Copynumber: 3.8 Consensus size: 12
93117327 ATAACTAGTA
93117337 ATATTAAAATAT
1 ATATTAAAATAT
*
93117349 ATA-T-ATATAT
1 ATATTAAAATAT
93117359 ATA-TAAAATAT
1 ATATTAAAATAT
93117370 ATATTAAAA
1 ATATTAAAA
93117379 GACTTATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 9 0.35
11 9 0.35
12 8 0.31
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATTAAAATAT
Found at i:93117372 original size:43 final size:43
Alignment explanation
Indices: 93117279--93117372 Score: 115
Period size: 43 Copynumber: 2.2 Consensus size: 43
93117269 ACAGTATTAG
*
93117279 AAATATATAATATAATATTAGAAGTATACATATAGTAGTATAA
1 AAATATATAATATAATATTAGAAATATACATATAGTAGTATAA
*
93117322 AAA-ATATAACTAGTAATATTA-AAATATATATATA-TA-TATATA
1 AAATATATAA-TA-TAATATTAGAAATATACATATAGTAGTATA-A
93117364 AAATATATA
1 AAATATATA
93117373 TTAAAAGACT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
41 4 0.09
42 12 0.27
43 21 0.47
44 8 0.18
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.36
Consensus pattern (43 bp):
AAATATATAATATAATATTAGAAATATACATATAGTAGTATAA
Found at i:93118954 original size:23 final size:22
Alignment explanation
Indices: 93118924--93118972 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
93118914 CTGGGTTTTG
93118924 GGGTTTGGGTCT-GGTTGTAAAT
1 GGGTTTGGGTCTAGGTTGT-AAT
*
93118946 GGGTATTGGGTCTAGTTTGTAAT
1 GGGT-TTGGGTCTAGGTTGTAAT
93118969 GGGT
1 GGGT
93118973 CAGTTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 15 0.62
24 5 0.21
ACGTcount: A:0.14, C:0.04, G:0.41, T:0.41
Consensus pattern (22 bp):
GGGTTTGGGTCTAGGTTGTAAT
Found at i:93121687 original size:26 final size:26
Alignment explanation
Indices: 93121657--93121719 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
93121647 TCAGAGTTTA
93121657 AAATTTGATTTGAAGAATTTAAATAT
1 AAATTTGATTTGAAGAATTTAAATAT
*
93121683 AAATTTGATTTGAAGAATTTAATTAT
1 AAATTTGATTTGAAGAATTTAAATAT
*
93121709 AAATTTTATTT
1 AAATTTGATTT
93121720 AATTCGATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (26 bp):
AAATTTGATTTGAAGAATTTAAATAT
Found at i:93123241 original size:22 final size:24
Alignment explanation
Indices: 93123208--93123252 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
93123198 GACTTAACAA
93123208 AAAATATATTA-TTATTA-ATTTT
1 AAAATATATTATTTATTATATTTT
93123230 AAAATAGT-TTATTTATTATATTT
1 AAAATA-TATTATTTATTATATTT
93123253 ATATATGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 9 0.45
23 7 0.35
24 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
AAAATATATTATTTATTATATTTT
Found at i:93126858 original size:2 final size:2
Alignment explanation
Indices: 93126853--93126881 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
93126843 TATTTGATTT
93126853 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
93126882 TGGTATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:93127198 original size:21 final size:21
Alignment explanation
Indices: 93127172--93127211 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
93127162 ACCATGACCC
*
93127172 TAAATCCCAAATCCTAAACAT
1 TAAATCCAAAATCCTAAACAT
*
93127193 TAAATCCAAAATTCTAAAC
1 TAAATCCAAAATCCTAAAC
93127212 CCCGAACCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAATCCAAAATCCTAAACAT
Found at i:93127244 original size:34 final size:34
Alignment explanation
Indices: 93127206--93127280 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 34
93127196 ATCCAAAATT
*
93127206 CTAAACCCCGAACCTTGAATAGTGACCTCAAACC
1 CTAAACCCCAAACCTTGAATAGTGACCTCAAACC
*
93127240 CTAAACCCCAAACCTTGAATATTGACCTCAAACC
1 CTAAACCCCAAACCTTGAATAGTGACCTCAAACC
93127274 CTAAACC
1 CTAAACC
93127281 TTAAATATCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.37, C:0.36, G:0.08, T:0.19
Consensus pattern (34 bp):
CTAAACCCCAAACCTTGAATAGTGACCTCAAACC
Found at i:93134422 original size:2 final size:2
Alignment explanation
Indices: 93134415--93134449 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
93134405 CATAAAGATA
93134415 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
93134450 ACTCTTCAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:93138778 original size:3 final size:3
Alignment explanation
Indices: 93138770--93138858 Score: 178
Period size: 3 Copynumber: 29.7 Consensus size: 3
93138760 ATACGTATAC
93138770 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
93138818 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
93138859 GATATGCATG
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 86 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:93142344 original size:31 final size:31
Alignment explanation
Indices: 93142285--93142350 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
93142275 AGTTAAAGAT
*
93142285 TTAAGATATAATATCATTAGCTAGTTAAGTC
1 TTAAGATATAATATCATTAGCGAGTTAAGTC
*
93142316 TTAAGATATAATATCATTAGCCGA-TTAAGTT
1 TTAAGATATAATATCATTAG-CGAGTTAAGTC
93142347 TTAA
1 TTAA
93142351 CTCAATTGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 30 0.94
32 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (31 bp):
TTAAGATATAATATCATTAGCGAGTTAAGTC
Found at i:93142475 original size:2 final size:2
Alignment explanation
Indices: 93142468--93142498 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
93142458 TGCATTATCT
93142468 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
93142499 GATAAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:93147736 original size:12 final size:12
Alignment explanation
Indices: 93147719--93147743 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93147709 TGCAAGTACC
93147719 AAAAATAATAAA
1 AAAAATAATAAA
93147731 AAAAATAATAAA
1 AAAAATAATAAA
93147743 A
1 A
93147744 TAACAAGCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAATAATAAA
Found at i:93153925 original size:42 final size:42
Alignment explanation
Indices: 93153873--93154002 Score: 183
Period size: 42 Copynumber: 3.1 Consensus size: 42
93153863 CAATCCGTAT
*
93153873 GTTTAAATAGAAGCTCGTAAA-AGCTGAACGAAAACCCGTAAG
1 GTTTAAATAGAAGCT-GTAAAGAGCTGAACGGAAACCCGTAAG
93153915 GTTTAAATAGAAGCT-TAAAAGAGCTGAACGGAAACCCGTAAG
1 GTTTAAATAGAAGCTGT-AAAGAGCTGAACGGAAACCCGTAAG
* * *
93153957 ATTTAAATAGAAGCTGAAAAGAGCTGAACGGAAACCCAATAAG
1 GTTTAAATAGAAGCTGTAAAGAGCTGAACGGAAACCC-GTAAG
93154000 GTT
1 GTT
93154003 AAACGGAAAC
Statistics
Matches: 79, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
40 1 0.01
41 3 0.04
42 69 0.87
43 6 0.08
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (42 bp):
GTTTAAATAGAAGCTGTAAAGAGCTGAACGGAAACCCGTAAG
Found at i:93154009 original size:21 final size:21
Alignment explanation
Indices: 93153983--93154025 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
93153973 AAAAGAGCTG
93153983 AACGGAAACCCA-ATAAGGTTA
1 AACGGAAACCCATATAA-GTTA
*
93154004 AACGGAAACTCATATAAGTTA
1 AACGGAAACCCATATAAGTTA
93154025 A
1 A
93154026 CAGAAGCTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (21 bp):
AACGGAAACCCATATAAGTTA
Found at i:93154107 original size:24 final size:24
Alignment explanation
Indices: 93154072--93154118 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
93154062 TGCTTGGGTA
93154072 ATTTGCCATCAATTCATCCTTTGT
1 ATTTGCCATCAATTCATCCTTTGT
*
93154096 ATTTGCCGTCAATTCATCCTTTG
1 ATTTGCCATCAATTCATCCTTTG
93154119 CCACGGAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.26, G:0.11, T:0.45
Consensus pattern (24 bp):
ATTTGCCATCAATTCATCCTTTGT
Found at i:93163760 original size:15 final size:16
Alignment explanation
Indices: 93163740--93163777 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
93163730 CAATGATTCG
93163740 ATTTTAGTTTTAAT-T
1 ATTTTAGTTTTAATAT
*
93163755 ATTTTAATTTTTAATAT
1 ATTTT-AGTTTTAATAT
93163772 ATTTTA
1 ATTTTA
93163778 TATTAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 5 0.25
16 9 0.45
17 6 0.30
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
ATTTTAGTTTTAATAT
Found at i:93167149 original size:38 final size:38
Alignment explanation
Indices: 93167107--93167184 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
93167097 TGTATTTTTT
* *
93167107 AATAATTTT-GAATATTTT-AATAATTTTTCATTTTTAAA
1 AATAATTTTAGAATATTTTGAAT--TTTTTAAATTTTAAA
*
93167145 AATAATTTTATAATATTTTGAATTTTTTAAATTTTAAA
1 AATAATTTTAGAATATTTTGAATTTTTTAAATTTTAAA
93167183 AA
1 AA
93167185 ATTAATTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 24 0.69
39 8 0.23
40 3 0.09
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (38 bp):
AATAATTTTAGAATATTTTGAATTTTTTAAATTTTAAA
Found at i:93167185 original size:39 final size:37
Alignment explanation
Indices: 93167107--93167191 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 37
93167097 TGTATTTTTT
* *
93167107 AATAATTTTGAATATTTTAATAATTTTTCATTTTTAAA
1 AATAATTTTGAATATTTTAAT-ATTTTTAATTTTAAAA
*
93167145 AATAATTTTATAATATTTTGAAT-TTTTTAAATTTTAAAA
1 AATAATTTT-GAATATTTT-AATATTTTT-AATTTTAAAA
93167184 AATTAATT
1 AA-TAATT
93167192 AAATGTTGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
38 14 0.35
39 18 0.45
40 8 0.20
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.54
Consensus pattern (37 bp):
AATAATTTTGAATATTTTAATATTTTTAATTTTAAAA
Found at i:93169943 original size:16 final size:16
Alignment explanation
Indices: 93169922--93169954 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
93169912 TAAAAGATTA
93169922 AAAGTAA-ATAATACAC
1 AAAGTAATAT-ATACAC
93169938 AAAGTAATATATACAC
1 AAAGTAATATATACAC
93169954 A
1 A
93169955 GGAAAAGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.61, C:0.12, G:0.06, T:0.21
Consensus pattern (16 bp):
AAAGTAATATATACAC
Done.