Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 319 of 335
Found at i:93865982 original size:17 final size:18
Alignment explanation
Indices: 93865960--93865993 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
93865950 GAACTATGAA
93865960 GGCATTCGATC-TTTCAT
1 GGCATTCGATCATTTCAT
93865977 GGCATTCGATCATTTCA
1 GGCATTCGATCATTTCA
93865994 ATGAAAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.38
Consensus pattern (18 bp):
GGCATTCGATCATTTCAT
Found at i:93867735 original size:2 final size:2
Alignment explanation
Indices: 93867683--93867716 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
93867673 AAAGAAAATG
93867683 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93867717 GACTCAGAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:93869446 original size:26 final size:26
Alignment explanation
Indices: 93869410--93869519 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
93869400 TGATACAAAT
93869410 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
93869436 TGATAATAGGTTAGATAAATGTTACA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93869462 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93869488 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
93869514 TGATAA
1 TGATAA
93869520 GAATATCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:93875272 original size:26 final size:26
Alignment explanation
Indices: 93875210--93875318 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
93875200 TGATACAAAT
93875210 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93875235 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93875261 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93875287 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
93875313 TGATAA
1 TGATAA
93875319 GAATTCATGT
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 21 0.26
26 59 0.74
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:93877344 original size:136 final size:137
Alignment explanation
Indices: 93877098--93877383 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
93877088 GAGTAGTCTC
93877098 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
93877163 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93877228 ACTGTTA
131 ACTGTTA
*
93877235 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
93877299 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93877364 ACTGTTA
131 ACTGTTA
**
93877371 CCTGAATGGGCTT
1 CCCAAATGGGCTT
93877384 AGGCCCAATA
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 124 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:93883664 original size:68 final size:70
Alignment explanation
Indices: 93883592--93883789 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
93883582 ACACCCTGTA
* * * *
93883592 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
93883654 ATAAAT
65 ATAAAT
*
93883660 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
93883725 ATAAAT
65 ATAAAT
*
93883731 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
93883790 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:93883703 original size:41 final size:41
Alignment explanation
Indices: 93883658--93883775 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
93883648 TGAAAGATAA
93883658 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
93883699 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93883729 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93883770 ATGTAG
1 ATGTAG
93883776 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:93883715 original size:71 final size:71
Alignment explanation
Indices: 93883626--93883789 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
93883616 GAGATGTATC
93883626 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93883691 AGGACA
66 AGGACA
93883697 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93883762 AGGACA
66 AGGACA
93883768 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
93883790 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:93891233 original size:68 final size:70
Alignment explanation
Indices: 93891161--93891358 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
93891151 ACACCCTGTA
* * * *
93891161 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
93891223 ATAAAT
65 ATAAAT
*
93891229 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
93891294 ATAAAT
65 ATAAAT
*
93891300 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
93891359 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:93891272 original size:41 final size:41
Alignment explanation
Indices: 93891227--93891344 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
93891217 TGAAAGATAA
93891227 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
93891268 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93891298 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93891339 ATGTAG
1 ATGTAG
93891345 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:93891284 original size:71 final size:71
Alignment explanation
Indices: 93891195--93891358 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
93891185 GAGATGTATC
93891195 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93891260 AGGACA
66 AGGACA
93891266 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93891331 AGGACA
66 AGGACA
93891337 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
93891359 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:93895709 original size:18 final size:19
Alignment explanation
Indices: 93895686--93895735 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
93895676 GACATATTTC
*
93895686 ATTTAATTTTAATAGA-TA
1 ATTTAATTTTAATAAATTA
*
93895704 ATTTAATTATAATAAATTA
1 ATTTAATTTTAATAAATTA
*
93895723 A-ATAATTTTAATA
1 ATTTAATTTTAATA
93895736 CATCTTAAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 24 0.89
19 3 0.11
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
ATTTAATTTTAATAAATTA
Found at i:93899121 original size:16 final size:16
Alignment explanation
Indices: 93899100--93899140 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
93899090 CTGTATTTAC
*
93899100 ATATATTGATAAATAT
1 ATATATTAATAAATAT
*
93899116 ATATATTAATAAATTT
1 ATATATTAATAAATAT
*
93899132 ATATTTTAA
1 ATATATTAA
93899141 ATTATTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
ATATATTAATAAATAT
Found at i:93900339 original size:2 final size:2
Alignment explanation
Indices: 93900332--93900358 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
93900322 CATCAATTTC
93900332 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
93900359 CAATATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:93900756 original size:25 final size:25
Alignment explanation
Indices: 93900705--93900757 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
93900695 TTGATCACTC
**
93900705 AAACTCATCTTTTGAGTTGGAATAA
1 AAACTCATCTTTTGAGAGGGAATAA
*
93900730 AAACTCATCTTTTTAGAAGGGAA-AA
1 AAACTCATCTTTTGAG-AGGGAATAA
93900755 AAA
1 AAA
93900758 GAAAAAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.30
Consensus pattern (25 bp):
AAACTCATCTTTTGAGAGGGAATAA
Found at i:93901762 original size:17 final size:17
Alignment explanation
Indices: 93901740--93901774 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
93901730 TCAATCAAAT
93901740 CCAAGAAAAAGTCGTCA
1 CCAAGAAAAAGTCGTCA
93901757 CCAAGAAAAAGTCGTCA
1 CCAAGAAAAAGTCGTCA
93901774 C
1 C
93901775 AATCACAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.26, G:0.17, T:0.11
Consensus pattern (17 bp):
CCAAGAAAAAGTCGTCA
Found at i:93902894 original size:16 final size:19
Alignment explanation
Indices: 93902869--93902933 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 19
93902859 TGAAATTGAA
93902869 ATATTAAATAATTTATTAA-
1 ATATT-AATAATTTATTAAT
93902888 A-A-TAATAAATTATATTAATT
1 ATATTAAT-AATT-TATTAA-T
93902908 ATATTAATAATTTATT-AT
1 ATATTAATAATTTATTAAT
93902926 ATAATTAA
1 AT-ATTAA
93902934 ATATGTATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
16 3 0.08
17 5 0.13
18 10 0.26
19 7 0.18
20 5 0.13
21 5 0.13
22 4 0.10
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATTAATAATTTATTAAT
Found at i:93913566 original size:6 final size:6
Alignment explanation
Indices: 93913555--93913583 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
93913545 ATAATGGGTA
93913555 AATTTT AATTTT AATTTT AATTTT AATTT
1 AATTTT AATTTT AATTTT AATTTT AATTT
93913584 ATGTAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
AATTTT
Found at i:93915137 original size:9 final size:9
Alignment explanation
Indices: 93915123--93915185 Score: 67
Period size: 10 Copynumber: 6.7 Consensus size: 9
93915113 TTATCATACT
93915123 AAAATTAAA
1 AAAATTAAA
93915132 AAAATTTCAAA
1 AAAA-TT-AAA
93915143 AAAATCT-AA
1 AAAAT-TAAA
93915152 AAAATATAAA
1 AAAAT-TAAA
93915162 AAAAGTTAAA
1 AAAA-TTAAA
93915172 AAAA-TAAA
1 AAAATTAAA
93915180 AAAATT
1 AAAATT
93915186 TCTAGAATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
8 8 0.17
9 13 0.28
10 17 0.36
11 9 0.19
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.22
Consensus pattern (9 bp):
AAAATTAAA
Found at i:93915145 original size:10 final size:10
Alignment explanation
Indices: 93915123--93915183 Score: 58
Period size: 9 Copynumber: 6.3 Consensus size: 10
93915113 TTATCATACT
93915123 AAAAT-TAAA
1 AAAATATAAA
*
93915132 AAAATTTCAAA
1 AAAATAT-AAA
*
93915143 AAAATCT-AA
1 AAAATATAAA
93915152 AAAATATAAA
1 AAAATATAAA
93915162 AAAAGT-TAAA
1 AAAA-TATAAA
93915172 AAAATA-AAA
1 AAAATATAAA
93915181 AAA
1 AAA
93915184 TTTCTAGAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
9 20 0.44
10 15 0.33
11 10 0.22
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (10 bp):
AAAATATAAA
Found at i:93915162 original size:18 final size:18
Alignment explanation
Indices: 93915140--93915183 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
93915130 AAAAAATTTC
93915140 AAAAAAA-TCTAAAAAATAT
1 AAAAAAAGT-TAAAAAA-AT
93915159 AAAAAAAGTTAAAAAAAT
1 AAAAAAAGTTAAAAAAAT
93915177 AAAAAAA
1 AAAAAAA
93915184 TTTCTAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.38
19 14 0.58
20 1 0.04
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (18 bp):
AAAAAAAGTTAAAAAAAT
Found at i:93921857 original size:9 final size:9
Alignment explanation
Indices: 93921834--93921901 Score: 55
Period size: 9 Copynumber: 7.4 Consensus size: 9
93921824 TGTGTTCATT
93921834 ATAATTTTA
1 ATAATTTTA
** *
93921843 GGAATTTAA
1 ATAATTTTA
*
93921852 ATAATTTTT
1 ATAATTTTA
*
93921861 ATAATTTTT
1 ATAATTTTA
*
93921870 ATATTTTTA
1 ATAATTTTA
*
93921879 ATAATTTATC
1 ATAATTT-TA
*
93921889 ATAATTTTT
1 ATAATTTTA
93921898 ATAA
1 ATAA
93921902 CTAATTAGGA
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
9 38 0.83
10 8 0.17
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (9 bp):
ATAATTTTA
Found at i:93921936 original size:20 final size:19
Alignment explanation
Indices: 93921913--93921963 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
93921903 TAATTAGGAT
93921913 ATTTTAATTTTTTTTATAAA
1 ATTTTAATTTTTTTTAT-AA
*
93921933 ATTTTAA-TTTTTTTATTA
1 ATTTTAATTTTTTTTATAA
93921951 ATTTTATATTTTT
1 ATTTTA-ATTTTT
93921964 ATAATTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 7 0.25
19 10 0.36
20 11 0.39
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
ATTTTAATTTTTTTTATAA
Found at i:93921945 original size:19 final size:19
Alignment explanation
Indices: 93921913--93921967 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 19
93921903 TAATTAGGAT
93921913 ATTTTAATTTTTTTTATAAA
1 ATTTTAA-TTTTTTTATAAA
*
93921933 ATTTTAATTTTTTTAT-TA
1 ATTTTAATTTTTTTATAAA
*
93921951 ATTTT-ATATTTTTATAA
1 ATTTTAATTTTTTTATAA
93921968 TTTATTATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 9 0.29
18 6 0.19
19 9 0.29
20 7 0.23
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTTAATTTTTTTATAAA
Found at i:93922429 original size:16 final size:18
Alignment explanation
Indices: 93922402--93922434 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
93922392 TTCATTGCAA
93922402 ATTTTGAAATTA-TAAAG
1 ATTTTGAAATTAGTAAAG
93922419 ATTTT-AAATTAGTAAA
1 ATTTTGAAATTAGTAAA
93922435 TATAAAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (18 bp):
ATTTTGAAATTAGTAAAG
Found at i:93922523 original size:16 final size:16
Alignment explanation
Indices: 93922491--93922528 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
93922481 AATATTTTAA
93922491 AAATTA-TAAAGATAT
1 AAATTATTAAAGATAT
93922506 AAATTATTAAA-ATAAT
1 AAATTATTAAAGAT-AT
93922522 AAATTAT
1 AAATTAT
93922529 ATTTTTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (16 bp):
AAATTATTAAAGATAT
Found at i:93926421 original size:31 final size:31
Alignment explanation
Indices: 93926334--93926421 Score: 90
Period size: 29 Copynumber: 2.9 Consensus size: 31
93926324 ATTATGGGCC
*
93926334 ATTTCTTTTTTTGGTCATTCAATTATGAATTT
1 ATTTC-TTTTTTGGTCACTCAATTATGAATTT
*** *
93926366 -TTT-TAAATTGGTCACTCAACTATGAATTT
1 ATTTCTTTTTTGGTCACTCAATTATGAATTT
* *
93926395 ATTTCTTTTTTGGTGACCCAATTATGA
1 ATTTCTTTTTTGGTCACTCAATTATGA
93926422 CGTTTGGCCA
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
29 21 0.49
30 3 0.07
31 19 0.44
ACGTcount: A:0.25, C:0.12, G:0.11, T:0.51
Consensus pattern (31 bp):
ATTTCTTTTTTGGTCACTCAATTATGAATTT
Found at i:93930701 original size:14 final size:14
Alignment explanation
Indices: 93930682--93930708 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
93930672 TTGTTTGCAT
93930682 GTAAAATATTTTCC
1 GTAAAATATTTTCC
93930696 GTAAAATATTTTC
1 GTAAAATATTTTC
93930709 ATTGTTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (14 bp):
GTAAAATATTTTCC
Found at i:93932718 original size:27 final size:27
Alignment explanation
Indices: 93932673--93932777 Score: 99
Period size: 27 Copynumber: 3.9 Consensus size: 27
93932663 GCGAGGCTGC
* *
93932673 CAGATATTGTGACTA-AGTCACCAGATA
1 CAGATATTGTGGC-AGAGCCACCAGATA
* *
93932700 CAGATATTGTGGCAGAGTCATCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
93932726 CAGATATATGTGGTAGAGCCAACAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
93932753 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
93932778 GACAGGACGC
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 9 0.14
27 55 0.83
28 2 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:93934407 original size:26 final size:26
Alignment explanation
Indices: 93934377--93934432 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
93934367 TGAAATTCCC
*
93934377 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
93934403 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
93934429 ATCA
1 ATCA
93934433 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:93940637 original size:27 final size:27
Alignment explanation
Indices: 93940592--93940750 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
93940582 GCGAGGCTGC
* *
93940592 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
93940619 CAGATATTGTGGCAGAGTCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
93940645 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
93940672 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
93940699 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
93940726 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
93940751 GACGCTTCCT
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 102 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:93940751 original size:54 final size:54
Alignment explanation
Indices: 93940610--93940753 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
93940600 GTGACGAAGT
* * *
93940610 CACCAGATACAGAT-ATTGTGGCAGAGTCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
93940664 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
93940718 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
93940754 GCTTCCTCCA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:93942363 original size:23 final size:26
Alignment explanation
Indices: 93942339--93942395 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
93942329 ATGAAATTCC
93942339 CATCAT-AGAACATTTACCTAACCCAT
1 CATCATGA-AACATTTACCTAACCCAT
*
93942365 TATCATGAAACATTTACCTAACCCAT
1 CATCATGAAACATTTACCTAACCCAT
*
93942391 TATCA
1 CATCA
93942396 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.39, C:0.28, G:0.04, T:0.30
Consensus pattern (26 bp):
CATCATGAAACATTTACCTAACCCAT
Found at i:93944567 original size:2 final size:2
Alignment explanation
Indices: 93944562--93944600 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
93944552 AAGGAAGCTA
*
93944562 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
93944601 ATTAAATGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:93946658 original size:2 final size:2
Alignment explanation
Indices: 93946651--93946692 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
93946641 ATAAAGTACA
*
93946651 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93946693 TAGAGAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93956617 original size:2 final size:2
Alignment explanation
Indices: 93956612--93956652 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
93956602 AAGGAAGCTA
93956612 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
93956653 ATTAAATGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:93959850 original size:26 final size:26
Alignment explanation
Indices: 93959813--93959922 Score: 195
Period size: 26 Copynumber: 4.2 Consensus size: 26
93959803 TGATACAAAT
*
93959813 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATGGGTTAGGTAAATGTTTC-A
93959839 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93959865 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93959891 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93959917 TGATAA
1 TGATAA
93959923 GAATTTCATG
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
26 79 0.96
27 3 0.04
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:93963521 original size:26 final size:26
Alignment explanation
Indices: 93963485--93963620 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
93963475 CATGAAATTC
*
93963485 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
93963511 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
93963537 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
93963563 TTATTATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
93963589 TTATCATGAAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
93963615 TTATCA
1 TTATCA
93963621 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:93964902 original size:2 final size:2
Alignment explanation
Indices: 93964895--93964937 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
93964885 AAAAATATCA
93964895 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93964937 A
1 A
93964938 ATACCCAAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:93969718 original size:53 final size:53
Alignment explanation
Indices: 93969637--93969787 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
93969627 CTTACACGGT
* *
93969637 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
93969692 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
93969745 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
93969788 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:93976736 original size:53 final size:53
Alignment explanation
Indices: 93976655--93976805 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
93976645 CTTACACGGT
* *
93976655 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
93976710 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
93976763 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
93976806 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:93979148 original size:30 final size:30
Alignment explanation
Indices: 93979090--93979150 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
93979080 TTCCCGAGCC
* *
93979090 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
93979120 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
93979150 T
1 T
93979151 GTATTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:93979589 original size:16 final size:16
Alignment explanation
Indices: 93979568--93979607 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
93979558 CACTAGGATG
93979568 GTTGAGTTCCGAACTC
1 GTTGAGTTCCGAACTC
93979584 GTTGAGTTCCGAACTC
1 GTTGAGTTCCGAACTC
93979600 GTTGAGTT
1 GTTGAGTT
93979608 GAGTCCGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.17, C:0.20, G:0.28, T:0.35
Consensus pattern (16 bp):
GTTGAGTTCCGAACTC
Found at i:93986697 original size:91 final size:91
Alignment explanation
Indices: 93986529--93986697 Score: 295
Period size: 92 Copynumber: 1.9 Consensus size: 91
93986519 GGGATATTTG
* *
93986529 GGCATCCGAACTCGTTGAGTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GGCATCCGAACTCGTTGAGTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93986594 TGAGTCCGAGTTCGTGAGATGTACTA
66 TGAGTCCGAGTTCGTGAGATGTACTA
*
93986620 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA-
1 GGCATCCGAACTCGTTGAG-TGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
93986684 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
93986698 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 33 0.45
92 41 0.55
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (91 bp):
GGCATCCGAACTCGTTGAGTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTACTA
Found at i:93986698 original size:45 final size:46
Alignment explanation
Indices: 93986534--93986705 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
93986524 ATTTGGGCAT
* *
93986534 CCGAACTCGTTGAG-TGAGTCCGAGTTCACTTATGGATGCGAGCGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
93986579 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--CGAACGC
93986623 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
93986671 CCGAGCTCGTTGA-TTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93986706 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 39 0.36
46 53 0.50
47 3 0.03
48 3 0.03
49 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:93989687 original size:13 final size:14
Alignment explanation
Indices: 93989666--93989712 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
93989656 TTATTAGTAC
*
93989666 TTATTTTTTT-CTT
1 TTATTTTTTTGATT
*
93989679 TTTTTTTTTTGATT
1 TTATTTTTTTGATT
*
93989693 TTATTTTTTTAAATT
1 TTATTTTTTT-GATT
93989708 TTATT
1 TTATT
93989713 ATTATATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 9 0.32
14 11 0.39
15 8 0.29
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (14 bp):
TTATTTTTTTGATT
Found at i:93989986 original size:118 final size:118
Alignment explanation
Indices: 93989826--93990056 Score: 390
Period size: 118 Copynumber: 2.0 Consensus size: 118
93989816 TATTTCCGGT
93989826 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* *
93989891 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
93989944 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
**
93990009 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
93990057 ATGGAAAACA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 105 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:93990808 original size:41 final size:43
Alignment explanation
Indices: 93990722--93990811 Score: 121
Period size: 41 Copynumber: 2.1 Consensus size: 43
93990712 TGAAAAGGGG
* * * *
93990722 TGTTTGGCTGCAGGTTTTGGGGATTCTAAGGCTGGAATAGGAC
1 TGTTTGGCTGCAGGATATGGGCATTCTAAGGCTGGAATAGAAC
*
93990765 TGTTTGGCTGCAGGATAT-GGCATTCT-GGGCTGGAATAGAAC
1 TGTTTGGCTGCAGGATATGGGCATTCTAAGGCTGGAATAGAAC
93990806 TGTTTG
1 TGTTTG
93990812 ACAGCATGGA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 19 0.45
42 7 0.17
43 16 0.38
ACGTcount: A:0.19, C:0.12, G:0.36, T:0.33
Consensus pattern (43 bp):
TGTTTGGCTGCAGGATATGGGCATTCTAAGGCTGGAATAGAAC
Found at i:93990931 original size:17 final size:18
Alignment explanation
Indices: 93990905--93990955 Score: 77
Period size: 20 Copynumber: 2.8 Consensus size: 18
93990895 AGAGAAATAT
93990905 AAAATAAAATAAAAGAAA
1 AAAATAAAATAAAAGAAA
93990923 AAAATAAATAATAAAAGAAA
1 AAAAT-AA-AATAAAAGAAA
93990943 AAAAT-AAATAAAA
1 AAAATAAAATAAAA
93990956 ATAAAAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.23
18 6 0.19
19 2 0.06
20 16 0.52
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (18 bp):
AAAATAAAATAAAAGAAA
Found at i:93990937 original size:20 final size:20
Alignment explanation
Indices: 93990912--93990953 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
93990902 TATAAAATAA
93990912 AATAAAAGAAAAAAATAAAT
1 AATAAAAGAAAAAAATAAAT
93990932 AATAAAAGAAAAAAATAAAT
1 AATAAAAGAAAAAAATAAAT
93990952 AA
1 AA
93990954 AAATAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (20 bp):
AATAAAAGAAAAAAATAAAT
Found at i:93990938 original size:13 final size:12
Alignment explanation
Indices: 93990899--93990962 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 12
93990889 GGAAGAAGAG
93990899 AAATATAAAAT-A
1 AAATA-AAAATAA
*
93990911 AAATAAAAGAAAA
1 AAATAAAA-ATAA
93990924 AAATAAATAATAA
1 AAATAAA-AATAA
*
93990937 AAGA-AAAAA-AT
1 AA-ATAAAAATAA
93990948 AAATAAAAATAA
1 AAATAAAAATAA
93990960 AAA
1 AAA
93990963 GAAAGATGGG
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
10 1 0.02
11 11 0.26
12 12 0.29
13 16 0.38
14 2 0.05
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (12 bp):
AAATAAAAATAA
Found at i:93990961 original size:17 final size:17
Alignment explanation
Indices: 93990899--93990962 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 17
93990889 GGAAGAAGAG
*
93990899 AAATATAAAATAAAATAA
1 AAATAAAAAAT-AAATAA
93990917 AAGA-AAAAAATAAATAATA
1 AA-ATAAAAAATAAAT-A-A
*
93990936 AAAGAAAAAAATAAATAA
1 AAA-TAAAAAATAAATAA
93990954 AAATAAAAA
1 AAATAAAAA
93990963 GAAAGATGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
17 9 0.23
18 14 0.36
19 5 0.13
20 11 0.28
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (17 bp):
AAATAAAAAATAAATAA
Found at i:93997376 original size:10 final size:10
Alignment explanation
Indices: 93997361--93997388 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
93997351 ACATTTAATT
93997361 AAAGATAAAC
1 AAAGATAAAC
93997371 AAAGATAAAC
1 AAAGATAAAC
93997381 AAAGATAA
1 AAAGATAA
93997389 TTAAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.71, C:0.07, G:0.11, T:0.11
Consensus pattern (10 bp):
AAAGATAAAC
Found at i:94004278 original size:8 final size:8
Alignment explanation
Indices: 94004234--94004271 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
94004224 AAAGCTAAAT
*
94004234 TAAAAAAA
1 TAAAATAA
94004242 TAAAAT-A
1 TAAAATAA
94004249 T-AAATAA
1 TAAAATAA
94004256 TAAAATAA
1 TAAAATAA
94004264 TAAAATAA
1 TAAAATAA
94004272 AATAATATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
6 4 0.15
7 4 0.15
8 19 0.70
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
TAAAATAA
Found at i:94005347 original size:32 final size:32
Alignment explanation
Indices: 94005280--94005522 Score: 290
Period size: 32 Copynumber: 7.6 Consensus size: 32
94005270 CTCGAGATGC
* *
94005280 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* * * *
94005313 ACATTTCCTTTTCAAGTGTACATATAAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
94005345 ACATTTCCTTTTCAAGTATACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
94005377 ACAAATCCTTTTCAAGTGTACATAAAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
94005409 ACGTTTCCTCTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
94005441 ACAAATCCTTTTCAAGTATA-ACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
**
94005472 ACAAATCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
94005504 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
94005523 CACCCTTTCG
Statistics
Matches: 176, Mismatches: 33, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
31 29 0.16
32 132 0.75
33 15 0.09
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:94005506 original size:95 final size:96
Alignment explanation
Indices: 94005286--94005522 Score: 350
Period size: 95 Copynumber: 2.5 Consensus size: 96
94005276 ATGCACATTC
* * * * * **
94005286 CCTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAAGTGTACATATAAGGGGTACATTT
1 CCTTTTCAAGT-GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAAT
*
94005351 CCTTTTCAAGTATACACACAAAGTGTACAAAT
65 CCTTTTCAAGTATACACACAAAGTCTACAAAT
* * * *
94005383 CCTTTTCAAGTGTACATAAAAAGTGTACGTTTCCTCTTCAAGTGTACACACAAAGTGTACAAATC
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
94005448 CTTTTCAAGTATA-ACACAAAGTCTACAAAT
66 CTTTTCAAGTATACACACAAAGTCTACAAAT
94005478 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
94005523 CACCCTTTCG
Statistics
Matches: 125, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
95 58 0.46
96 57 0.46
97 10 0.08
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (96 bp):
CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
CTTTTCAAGTATACACACAAAGTCTACAAAT
Found at i:94005545 original size:95 final size:97
Alignment explanation
Indices: 94005286--94005549 Score: 308
Period size: 95 Copynumber: 2.8 Consensus size: 97
94005276 ATGCACATTC
* * * * * *
94005286 CCTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAAGTGTA-CATATAAGG-GGTACAT
1 CCTTTTCAAGT-GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACCCT-TACGGATGTACAA
*
94005349 TTCCTTTTCAAGTATACACACAAAGTGTACAAAT
64 TTCCTTTTCAAGTATACACACAAAGTCTACAAAT
* * * * ** *
94005383 CCTTTTCAAGTGTACATAAAAAGTGTACGTTTCCTCTTCAAGTGTACAC--ACAAAGTGTACAAA
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACCCTTACGGA-TGTACAAT
94005446 TCCTTTTCAAGTATA-ACACAAAGTCTACAAAT
65 TCCTTTTCAAGTATACACACAAAGTCTACAAAT
*
94005478 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTCACCCTTTCGGATG-A-AAT
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT-ACCCTTACGGATGTACAAT
94005541 TCCTTTTCA
65 TCCTTTTCA
94005550 TAATGAGATC
Statistics
Matches: 139, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
94 1 0.01
95 69 0.50
96 55 0.40
97 12 0.09
98 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (97 bp):
CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACCCTTACGGATGTACAATT
CCTTTTCAAGTATACACACAAAGTCTACAAAT
Found at i:94017563 original size:10 final size:9
Alignment explanation
Indices: 94017539--94017581 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
94017529 TCCACGTAAA
94017539 ATTTATGTTT
1 ATTTAT-TTT
*
94017549 CTTTATTTTT
1 ATTTA-TTTT
94017559 ATTTATTTT
1 ATTTATTTT
94017568 ATTCTATTTT
1 ATT-TATTTT
94017578 ATTT
1 ATTT
94017582 TTCACATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
9 8 0.28
10 20 0.69
11 1 0.03
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (9 bp):
ATTTATTTT
Found at i:94018656 original size:15 final size:15
Alignment explanation
Indices: 94018638--94018667 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
94018628 AATAAGAGAT
94018638 AATAAAATATAAAAA
1 AATAAAATATAAAAA
94018653 AATAAAATATAAAAA
1 AATAAAATATAAAAA
94018668 TAAGAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (15 bp):
AATAAAATATAAAAA
Found at i:94020338 original size:22 final size:20
Alignment explanation
Indices: 94020312--94020354 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
94020302 GAAACCATGG
94020312 GGTGGACGGAGGTGCGGACGGT
1 GGTGGACGGAGGT--GGACGGT
*
94020334 GGTGGACGGTGGTGGACGGT
1 GGTGGACGGAGGTGGACGGT
94020354 G
1 G
94020355 CTGGTGAGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
22 12 0.60
ACGTcount: A:0.12, C:0.12, G:0.60, T:0.16
Consensus pattern (20 bp):
GGTGGACGGAGGTGGACGGT
Found at i:94020340 original size:10 final size:10
Alignment explanation
Indices: 94020312--94020354 Score: 59
Period size: 10 Copynumber: 4.1 Consensus size: 10
94020302 GAAACCATGG
*
94020312 GGTGGACGGA
1 GGTGGACGGT
94020322 GGTGCGGACGGT
1 GGT--GGACGGT
94020334 GGTGGACGGT
1 GGTGGACGGT
94020344 GGTGGACGGT
1 GGTGGACGGT
94020354 G
1 G
94020355 CTGGTGAGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 21 0.70
12 9 0.30
ACGTcount: A:0.12, C:0.12, G:0.60, T:0.16
Consensus pattern (10 bp):
GGTGGACGGT
Found at i:94025531 original size:30 final size:30
Alignment explanation
Indices: 94025496--94025556 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
94025486 GAATAGTTTA
94025496 GGATACAAGTGACATGTCACTAGGAACTAT
1 GGATACAAGTGACATGTCACTAGGAACTAT
94025526 GGATACAAGTGACATGTCACTAGGAACTAT
1 GGATACAAGTGACATGTCACTAGGAACTAT
94025556 G
1 G
94025557 TAATCTGAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (30 bp):
GGATACAAGTGACATGTCACTAGGAACTAT
Found at i:94025755 original size:72 final size:72
Alignment explanation
Indices: 94025653--94025835 Score: 312
Period size: 72 Copynumber: 2.5 Consensus size: 72
94025643 CTGTGAGTAA
* * * *
94025653 CTCGTTGAACGAGCATTTCATGTTAATGCAATGTGGGTCCGAGTATTGACTTCGTGACAGGACCT
1 CTCGATGAGCGAGCATTACATGATAATGCAATGTGGGTCCGAGTATTGACTTCGTGACAGGACCT
94025718 TGATTTG
66 TGATTTG
*
94025725 CTCGATGAGCGAGCATTACATGATAATGCAATGTGGGTCCGGGTATTGACTTCGTGACAGGACCT
1 CTCGATGAGCGAGCATTACATGATAATGCAATGTGGGTCCGAGTATTGACTTCGTGACAGGACCT
94025790 TGATTTG
66 TGATTTG
*
94025797 CTCGATGAGCGAGCATTACATGATAATGCTATGTGGGTC
1 CTCGATGAGCGAGCATTACATGATAATGCAATGTGGGTC
94025836 GGGGTGCTAA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 105 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (72 bp):
CTCGATGAGCGAGCATTACATGATAATGCAATGTGGGTCCGAGTATTGACTTCGTGACAGGACCT
TGATTTG
Found at i:94025881 original size:72 final size:71
Alignment explanation
Indices: 94025662--94025893 Score: 232
Period size: 72 Copynumber: 3.2 Consensus size: 71
94025652 ACTCGTTGAA
* * * * * * * *
94025662 CGAGCATTTCATGTTAATGCAATGTGGGTCCGAGTATTGACTTCGTGACAGGACCTTGATTTGCT
1 CGAGCATTACATGATAATGCAATGTGGGTCCGGGTACTAACTTCGTGACAAGACCTTGAGTAGCT
*
94025727 CGATGAG
66 CAAT-AG
* * * * *
94025734 CGAGCATTACATGATAATGCAATGTGGGTCCGGGTATTGACTTCGTGACAGGACCTTGATTTGCT
1 CGAGCATTACATGATAATGCAATGTGGGTCCGGGTACTAACTTCGTGACAAGACCTTGAGTAGCT
*
94025799 CGATGAG
66 CAAT-AG
* * * * *
94025806 CGAGCATTACATGATAATGCTATGTGGGTCGGGGTGCTAACTTTGTGAACAAGCCCTTGAGTAGC
1 CGAGCATTACATGATAATGCAATGTGGGTCCGGGTACTAACTTCGTG-ACAAGACCTTGAGTAGC
94025871 TCAA-ATG
65 TCAATA-G
*
94025878 CGAGTATTACATGATA
1 CGAGCATTACATGATA
94025894 TGAGGTAGCT
Statistics
Matches: 143, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
71 1 0.01
72 126 0.88
73 16 0.11
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (71 bp):
CGAGCATTACATGATAATGCAATGTGGGTCCGGGTACTAACTTCGTGACAAGACCTTGAGTAGCT
CAATAG
Found at i:94032876 original size:40 final size:40
Alignment explanation
Indices: 94032827--94032998 Score: 186
Period size: 40 Copynumber: 4.3 Consensus size: 40
94032817 TCTTCGGAAT
* *
94032827 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
94032866 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
94032906 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
94032946 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
94032986 TTAGCCCGGATAT
1 TTAGCCCGGATAT
94032999 GATTCAAATG
Statistics
Matches: 108, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 5 0.05
40 101 0.94
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:94036755 original size:31 final size:31
Alignment explanation
Indices: 94036714--94036790 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
94036704 GAACAGTACC
94036714 ACACACGCCCGTGTGGCCAGGCCGAGTGATT
1 ACACACGCCCGTGTGGCCAGGCCGAGTGATT
* * *
94036745 ACACATGCCCGTGTGGTCAGGCCGTGTGATT
1 ACACACGCCCGTGTGGCCAGGCCGAGTGATT
*
94036776 ACACACGCCCTTGTG
1 ACACACGCCCGTGTG
94036791 ACTTGGGACA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (31 bp):
ACACACGCCCGTGTGGCCAGGCCGAGTGATT
Found at i:94037839 original size:33 final size:32
Alignment explanation
Indices: 94037787--94038060 Score: 244
Period size: 32 Copynumber: 8.5 Consensus size: 32
94037777 CCGATGGACC
* *
94037787 TTTCCTTTTCCAGTTGTACAC-CTGAGGTGAACA
1 TTTCCTTTTCAAG-TGTACACACT-AGGTGTACA
* * * *
94037820 TTCCCTTTTCAAATGGTACACACAAAGTGTACA
1 TTTCCTTTTCAAGT-GTACACACTAGGTGTACA
*
94037853 TTTCCTTTTCAAGTGTACACACTAGGGGTACA
1 TTTCCTTTTCAAGTGTACACACTAGGTGTACA
* *
94037885 TTTCCTTTTCAAGTGTACACACAAAGTGTACA
1 TTTCCTTTTCAAGTGTACACACTAGGTGTACA
** * * * * *
94037917 AATCCATTTCAAGTGTACATACAAAGTGTACG
1 TTTCCTTTTCAAGTGTACACACTAGGTGTACA
* *
94037949 TTTCCTTTTCAAGTGTACACACAAAGTGTACA
1 TTTCCTTTTCAAGTGTACACACTAGGTGTACA
** * * *
94037981 AATCCTTTTCAAGTGTACACACAAAGTCTACA
1 TTTCCTTTTCAAGTGTACACACTAGGTGTACA
** * ** *
94038013 AATCCTTTTCAAGTGTACACACAAAATGTACG
1 TTTCCTTTTCAAGTGTACACACTAGGTGTACA
*
94038045 TTCCCTTTTCAAGTGT
1 TTTCCTTTTCAAGTGT
94038061 CACCCTTTCG
Statistics
Matches: 206, Mismatches: 33, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
32 170 0.83
33 35 0.17
34 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.33
Consensus pattern (32 bp):
TTTCCTTTTCAAGTGTACACACTAGGTGTACA
Found at i:94037884 original size:32 final size:32
Alignment explanation
Indices: 94037817--94038060 Score: 317
Period size: 32 Copynumber: 7.6 Consensus size: 32
94037807 CCTGAGGTGA
* *
94037817 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* * *
94037850 ACATTTCCTTTTCAAGTGTACACACTAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
94037882 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
94037914 ACAAATCCATTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
94037946 ACGTTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
94037978 ACAAATCCTTTTCAAGTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
94038010 ACAAATCCTTTTCAAGTGTACACACAAAATGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
94038042 ACGTTCCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
94038061 CACCCTTTCG
Statistics
Matches: 184, Mismatches: 27, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
32 169 0.92
33 15 0.08
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:94038087 original size:96 final size:96
Alignment explanation
Indices: 94037823--94038060 Score: 359
Period size: 96 Copynumber: 2.5 Consensus size: 96
94037813 GTGAACATTC
* * * *
94037823 CCTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAAGTGTACACACTAGGGGTACATTT
1 CCTTTTCAAGT-GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACTAAGGGTACAATT
*
94037888 CCTTTTCAAGTGTACACACAAAGTGTACAAAT
65 CCTTTTCAAGTGTACACACAAAGTCTACAAAT
* * * * *
94037920 CCATTTCAAGTGTACATACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGTGTACAAATC
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACTAAGGGTACAATTC
94037985 CTTTTCAAGTGTACACACAAAGTCTACAAAT
66 CTTTTCAAGTGTACACACAAAGTCTACAAAT
* *
94038016 CCTTTTCAAGTGTACACACAAAATGTACGTTCCCTTTTCAAGTGT
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
94038061 CACCCTTTCG
Statistics
Matches: 127, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
96 118 0.93
97 9 0.07
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.32
Consensus pattern (96 bp):
CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACTAAGGGTACAATTC
CTTTTCAAGTGTACACACAAAGTCTACAAAT
Found at i:94039445 original size:20 final size:20
Alignment explanation
Indices: 94039408--94039445 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
94039398 TATCAACAAC
*
94039408 CTTTCATTTTCAATCATAAA
1 CTTTCATTTTCAAGCATAAA
94039428 CTTTCAATTTTC-AGCATA
1 CTTTC-ATTTTCAAGCATA
94039446 TTCATCAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.45
Consensus pattern (20 bp):
CTTTCATTTTCAAGCATAAA
Found at i:94058604 original size:21 final size:21
Alignment explanation
Indices: 94058578--94058618 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
94058568 AGACAAGCGA
* *
94058578 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
94058599 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
94058619 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:94068709 original size:38 final size:38
Alignment explanation
Indices: 94068676--94068787 Score: 224
Period size: 38 Copynumber: 2.9 Consensus size: 38
94068666 TAAAATAAGG
94068676 ACTAAAAACAAAGTTAAACAAAAAATAGTAAAATACTT
1 ACTAAAAACAAAGTTAAACAAAAAATAGTAAAATACTT
94068714 ACTAAAAACAAAGTTAAACAAAAAATAGTAAAATACTT
1 ACTAAAAACAAAGTTAAACAAAAAATAGTAAAATACTT
94068752 ACTAAAAACAAAGTTAAACAAAAAATAGTAAAATAC
1 ACTAAAAACAAAGTTAAACAAAAAATAGTAAAATAC
94068788 ATACGTCGCC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 74 1.00
ACGTcount: A:0.64, C:0.11, G:0.05, T:0.20
Consensus pattern (38 bp):
ACTAAAAACAAAGTTAAACAAAAAATAGTAAAATACTT
Found at i:94069965 original size:31 final size:29
Alignment explanation
Indices: 94069908--94069966 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
94069898 TTGGTCACAT
* *
94069908 ATATTTCAATTATTATAATTTAATCATTA
1 ATATTTCAATTATAACAATTTAATCATTA
*
94069937 ATATTATCAATTTATAACAATTTGATCATT
1 ATATT-TCAA-TTATAACAATTTAATCATT
94069967 GTGCATTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.20
30 4 0.16
31 16 0.64
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (29 bp):
ATATTTCAATTATAACAATTTAATCATTA
Found at i:94070156 original size:10 final size:10
Alignment explanation
Indices: 94070141--94070167 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
94070131 ATTGATATAT
94070141 AAATTTTAGC
1 AAATTTTAGC
94070151 AAATTTTAGC
1 AAATTTTAGC
94070161 AAATTTT
1 AAATTTT
94070168 TTACCTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (10 bp):
AAATTTTAGC
Found at i:94070218 original size:21 final size:22
Alignment explanation
Indices: 94070181--94070222 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
94070171 CCTTGAACTC
*
94070181 AAACCTCAAACCTTAAACATCG
1 AAACCTCAAACCATAAACATCG
94070203 AAACCT-AAACCATAAACATC
1 AAACCTCAAACCATAAACATC
94070223 AAATCCAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.50, C:0.31, G:0.02, T:0.17
Consensus pattern (22 bp):
AAACCTCAAACCATAAACATCG
Found at i:94070261 original size:28 final size:28
Alignment explanation
Indices: 94070188--94070261 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 28
94070178 CTCAAACCTC
* * *
94070188 AAACCTTAAACATCGAAACCTAAACCAT
1 AAACCTCAAATATCGAACCCTAAACCAT
* * *
94070216 AAACATCAAAT-CCAGAACCCTAAACCTT
1 AAACCTCAAATATC-GAACCCTAAACCAT
*
94070244 TAACCTCAAATATCGAAC
1 AAACCTCAAATATCGAAC
94070262 ACGAACCCTA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
27 1 0.03
28 33 0.94
29 1 0.03
ACGTcount: A:0.47, C:0.30, G:0.04, T:0.19
Consensus pattern (28 bp):
AAACCTCAAATATCGAACCCTAAACCAT
Found at i:94070323 original size:13 final size:14
Alignment explanation
Indices: 94070288--94070325 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
94070278 TCGAACCTTG
*
94070288 AACCTAGAACCTAA
1 AACCTTGAACCTAA
94070302 AACCTTGAACCT-A
1 AACCTTGAACCTAA
*
94070315 AATCTTGAACC
1 AACCTTGAACC
94070326 CCAAACTCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.42, C:0.29, G:0.08, T:0.21
Consensus pattern (14 bp):
AACCTTGAACCTAA
Found at i:94070628 original size:22 final size:24
Alignment explanation
Indices: 94070580--94070628 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 24
94070570 TTAATGATCA
* *
94070580 AATCGTAATAATTGAAACATCAGT
1 AATCGTAATAATTGAAACAACAAT
*
94070604 AATCGT-A-AATTTAAACAACAAT
1 AATCGTAATAATTGAAACAACAAT
94070626 AAT
1 AAT
94070629 GGACTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 15 0.68
23 1 0.05
24 6 0.27
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (24 bp):
AATCGTAATAATTGAAACAACAAT
Found at i:94071509 original size:228 final size:226
Alignment explanation
Indices: 94071081--94071621 Score: 709
Period size: 228 Copynumber: 2.4 Consensus size: 226
94071071 ATGTAGCCGC
* * * * * *
94071081 GGAGGTGGATGTTGTAGCTGAGAAAGACAATGAAAAGAGATATCTTCTCAATAGCGCCAA-AGTG
1 GGAGGTGG-TATTGAAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACA-CG
* * * * *
94071145 AGTTGCGCTAAGGTTGGCTCCGG-ATGCTCGGATGTTGATG-T----TAATGGAAACGACTCCGT
64 AGTTGCGTTAAGGTTGGCTCCGGCA-GCACGGATGTTTATGTTAACGTAATGGAAGCGACTCTGT
* * * * *
94071204 TAATGGAGTTGTAGTGGAACCGGATGGCAATTGCGTTGTCGAAGAAGAACACGAAGTGAAATCCG
128 TAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGACCACGAAGTGAAATCCG
* * *
94071269 AATCAGATTCGGTTCCTATTACTATGCATCAGCA
193 AATCTGATTCGGTTACTATTACTATGAATCAGCA
*
94071303 GGAGGTGTGTATTGAAGCTGAGAAAGAGAATGAAACGAGATATCTTGTCAATGGCGCCAACACGA
1 GGAGGTG-GTATTGAAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* *
94071368 GTAGCGTTAAGGTTGGCTCCGGCAGCACTGATGTTTATGTTAACGTAAATGGAAGCGACTCTGTT
65 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTATGTTAACGT-AATGGAAGCGACTCTGTT
* *
94071433 AATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAAAAGACCACGAAGTGAAATCGGA
129 AATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGACCACGAAGTGAAATCCGA
* *
94071498 ATCTGATTCGGTTACTATGACTATGAATCAACA
194 ATCTGATTCGGTTACTATTACTATGAATCAGCA
* *
94071531 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
1 GGAGGTGG-TATTGAAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* *
94071596 GTTGCGTTAAGGTCGGCTTCGGCAGC
65 GTTGCGTTAAGGTTGGCTCCGGCAGC
94071622 TTTGATGGAA
Statistics
Matches: 277, Mismatches: 32, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
222 86 0.31
223 4 0.01
227 2 0.01
228 185 0.67
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (226 bp):
GGAGGTGGTATTGAAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGAG
TTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTATGTTAACGTAATGGAAGCGACTCTGTTAA
TGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGACCACGAAGTGAAATCCGAAT
CTGATTCGGTTACTATTACTATGAATCAGCA
Found at i:94072023 original size:228 final size:228
Alignment explanation
Indices: 94071626--94073323 Score: 2570
Period size: 228 Copynumber: 7.5 Consensus size: 228
94071616 GGCAGCTTTG
* *
94071626 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGAC
1 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
* *
94071691 CACGAAGTGAAATCCGAATCTGATTCAGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGA
66 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAGCAGGAGGTGGGTATTGA
* *
94071756 AGCTGAGAAAGAGAATGAAACGAGTTATCTGCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTG
131 AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTAGTTGCGTTAAGGTTG
94071821 GCTCCGGCAGCACGGATGTTTATGTTAACGTAA
196 GCTCCGGCAGCACGGATGTTTATGTTAACGTAA
*
94071854 ATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
1 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
* * *
94071919 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAACAGGAGGTGGATATTGT
66 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAGCAGGAGGTGGGTATTGA
* * * * *
94071984 AGCTGAGAAAGAGAATGAAACGAGCTATCTTCTCAATGGCGCGAACGCGAGTTGCCTTAAGGTTG
131 AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTAGTTGCGTTAAGGTTG
* ***
94072049 GCTTCGGCAGCTTTGATGTTTATGTTAACG---
196 GCTCCGGCAGCACGGATGTTTATGTTAACGTAA
* * *
94072079 -T--AAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGATGACAATTACATTGTCGAAGATGAC
1 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
*
94072141 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGA
66 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAGCAGGAGGTGGGTATTGA
* ** * **
94072206 AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCACCAACAAGAGTAGAATTAAGGTTG
131 AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTAGTTGCGTTAAGGTTG
*
94072271 GCTCCGTCAGCACGGATGTTTATGTTAACGTAA
196 GCTCCGGCAGCACGGATGTTTATGTTAACGTAA
*
94072304 ATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
1 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
* * *
94072369 CACGAAGTGAAATCCGAATCTGATTCGGTTACTTTTACTATGAATCAGCAGGAGGTGGATATTGT
66 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAGCAGGAGGTGGGTATTGA
* * * * *
94072434 AGCTGAGAAAGAGAAAGAAACGAGATATCTTCTCAATGGCGCCAACGCGAGTTGCGTTAAGGTTA
131 AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTAGTTGCGTTAAGGTTG
* ***
94072499 GCTTCGGCAGCTTTGATGTTTATG-T----T-A
196 GCTCCGGCAGCACGGATGTTTATGTTAACGTAA
*
94072526 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGATGAC
1 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
* * **
94072591 CACGAAGTGAAATCCGAATCTGATTCGATTACTATTACTAGGCGTCAGCAGGAGGTGGGTATTGA
66 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAGCAGGAGGTGGGTATTGA
*
94072656 AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTG
131 AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTAGTTGCGTTAAGGTTG
94072721 GCTCCGGCAGCACGGATGTTTATGTTAACGTAA
196 GCTCCGGCAGCACGGATGTTTATGTTAACGTAA
94072754 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
1 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
* * * * * *
94072819 CACGAAGTGAAATCTGAATCTGATTCGGTTACTATTAGTATGAATCAACAAGAGGTGGATATTGT
66 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAGCAGGAGGTGGGTATTGA
* * * *
94072884 AGCTGAGAAAGAGAAAGAAACGAGCTATCTTCTCAATGGCGCCAAC-GTGAGTTGCCTTAAGGTT
131 AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACT-AGTTGCGTTAAGGTT
* ***
94072948 GGCTTCGGCAGCTTTGATGTTTATG----C-T-A
195 GGCTCCGGCAGCACGGATGTTTATGTTAACGTAA
* * * *
94072976 ACGGAAGCGACTCTGTTAATGGAGTTGTACTGGAATCGGGTGACAATTACATTGTCGAAGATGAC
1 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
* * *
94073041 CACAAAGTGAAATCCGAATCTGATTCAGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGA
66 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAGCAGGAGGTGGGTATTGA
*
94073106 AGCTGAGAAAGAAAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTAGTTGCGTTAAGGTTG
131 AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTAGTTGCGTTAAGGTTG
*
94073171 GCTCCAGCAGCACGGATGTTTATGTTAACGTAA
196 GCTCCGGCAGCACGGATGTTTATGTTAACGTAA
*
94073204 ATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
1 ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
* * *
94073269 CACGAAGTGAAATCGGAATCTGATTCAGTTACTATTAGTATGAATCAGCAGGAGG
66 CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAGCAGGAGG
94073324 GGGAGAAACC
Statistics
Matches: 1317, Mismatches: 133, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
222 596 0.45
223 4 0.00
224 2 0.00
226 2 0.00
227 4 0.00
228 709 0.54
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (228 bp):
ATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGAC
CACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAGCAGGAGGTGGGTATTGA
AGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTAGTTGCGTTAAGGTTG
GCTCCGGCAGCACGGATGTTTATGTTAACGTAA
Found at i:94072304 original size:450 final size:450
Alignment explanation
Indices: 94071081--94073323 Score: 3713
Period size: 450 Copynumber: 5.0 Consensus size: 450
94071071 ATGTAGCCGC
* * * * * *
94071081 GGAGGTGGATGTTGTAGCTGAGAAAGACAATGAAAAGAGATATCTTCTCAATAGCGCCAAAGTGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
* ** * * * *
94071146 GTTGCGC-TAAGGTTGGCTCCGG-ATGCTCGGATGTTGATGTTAATGGAAACGACTCCGTTAATG
66 GTTGC-CTTAAGGTTGGCTTCGGCA-GCTTTGATGTTTATGTTAACGGAAGCGACTCTGTTAATG
* * * * * * * *
94071209 GAGTTGTAGTGGAACCGGATGGCAATTGCGTTGTCGAAGAAGAACACGAAGTGAAATCCGAATCA
129 GAGTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCT
* *
94071274 GATTCGGTTCCTATTACTATGCATCAGCAGGAGGTGTGTATTGAAGCTGAGAAAGAGAATGAAAC
194 GATTCGGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAAC
* * * *
94071339 GAGATATCTTGTCAATGGCGCCAACACGAGTAGCGTTAAGGTTGGCTCCGGCAGCACTGATGTTT
259 GAGTTATCTTCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTT
*
94071404 ATGTTAACGTAAATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATT
324 ATGTTAACGTAAATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATT
* * *
94071469 GTCGAAAAAGACCACGAAGTGAAATCGGAATCTGATTCGGTTACTATGACTATGAATCAACA
389 GTCGAAGAAGACCACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAACA
94071531 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
* *
94071596 GTTGCGTTAAGGTCGGCTTCGGCAGC-TT--TG---A---T---GGAAGCGACTCTGTTAATGGA
66 GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGTTAACGGAAGCGACTCTGTTAATGGA
94071649 GTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
131 GTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
*
94071714 TTCAGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGA
196 TTCGGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGA
*
94071779 GTTATCTGCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTAT
261 GTTATCTTCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTAT
94071844 GTTAACGTAAATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGT
326 GTTAACGTAAATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGT
94071909 CGAAGAAGACCACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAACA
391 CGAAGAAGACCACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAACA
* *
94071969 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGCTATCTTCTCAATGGCGCGAACGCGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
*
94072034 GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGTTAACGTAAGCGACTCTGTTAATGGA
66 GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGTTAACGGAAGCGACTCTGTTAATGGA
*
94072099 GTTGTAGTGGAATCGGATGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
131 GTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
94072164 TTCGGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGA
196 TTCGGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGA
* ** ** *
94072229 GTTATCTTCTCAATGGCACCAACAAGAGTAGAATTAAGGTTGGCTCCGTCAGCACGGATGTTTAT
261 GTTATCTTCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTAT
94072294 GTTAACGTAAATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGT
326 GTTAACGTAAATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGT
* *
94072359 CGAAGAAGACCACGAAGTGAAATCCGAATCTGATTCGGTTACTTTTACTATGAATCAGCA
391 CGAAGAAGACCACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAACA
*
94072419 GGAGGTGGATATTGTAGCTGAGAAAGAGAAAGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
* * *
94072484 GTTGCGTTAAGGTTAGCTTCGGCAGCTTTGATGTTTATGTTAATGGAAGCGACTCTGTTAATGGA
66 GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGTTAACGGAAGCGACTCTGTTAATGGA
*
94072549 GTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
131 GTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
* * *
94072614 TTCGATTACTATTACTAGGCGTCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGA
196 TTCGGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGA
94072679 GTTATCTTCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTAT
261 GTTATCTTCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTAT
*
94072744 GTTAACGTAAATGGAAGCGACTCTGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGT
326 GTTAACGTAAATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGT
* *
94072809 CGAAGAAGACCACGAAGTGAAATCTGAATCTGATTCGGTTACTATTAGTATGAATCAACA
391 CGAAGAAGACCACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAACA
* * * *
94072869 AGAGGTGGATATTGTAGCTGAGAAAGAGAAAGAAACGAGCTATCTTCTCAATGGCGCCAACGTGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
*
94072934 GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGCTAACGGAAGCGACTCTGTTAATGGA
66 GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGTTAACGGAAGCGACTCTGTTAATGGA
* *
94072999 GTTGTACTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACAAAGTGAAATCCGAATCTGA
131 GTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
* *
94073064 TTCAGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAAAATGAAACGA
196 TTCGGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGA
* *
94073129 GTTATCTTCTCAATGGCGCCAACACTAGTTGCGTTAAGGTTGGCTCCAGCAGCACGGATGTTTAT
261 GTTATCTTCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTAT
94073194 GTTAACGTAAATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGT
326 GTTAACGTAAATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGT
* * * *
94073259 CGAAGAAGACCACGAAGTGAAATCGGAATCTGATTCAGTTACTATTAGTATGAATCAGCA
391 CGAAGAAGACCACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAACA
94073319 GGAGG
1 GGAGG
94073324 GGGAGAAACC
Statistics
Matches: 1685, Mismatches: 94, Indels: 28
0.93 0.05 0.02
Matches are distributed among these distances:
438 406 0.24
439 2 0.00
441 3 0.00
444 2 0.00
447 3 0.00
450 1268 0.75
451 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (450 bp):
GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGTTAACGGAAGCGACTCTGTTAATGGA
GTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
TTCGGTTACTATTACTATGCATCAGCAGGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGA
GTTATCTTCTCAATGGCGCCAACACTAGTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTAT
GTTAACGTAAATGGAAGCGACTCCGTTAATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGT
CGAAGAAGACCACGAAGTGAAATCCGAATCTGATTCGGTTACTATTACTATGAATCAACA
Found at i:94076946 original size:20 final size:19
Alignment explanation
Indices: 94076923--94076995 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 19
94076913 AAATTACAAA
94076923 AAAAATTCAAAATTATTTT
1 AAAAATTCAAAATTATTTT
* *
94076942 CAAAAATTTAAAATAAATTTT
1 -AAAAATTCAAAAT-TATTTT
94076963 -AAAATTCAAAA-TATTTAT
1 AAAAATTCAAAATTATTT-T
94076981 AAAAATTTCAAAATT
1 AAAAA-TTCAAAATT
94076996 TATATTTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
17 4 0.09
18 1 0.02
19 14 0.32
20 19 0.43
21 6 0.14
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATTATTTT
Found at i:94077012 original size:26 final size:27
Alignment explanation
Indices: 94076940--94077013 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
94076930 CAAAATTATT
*
94076940 TTCAAAA-ATTTAAAATAAATTTTAAAA
1 TTCAAAATATTTAAAA-AAATTTCAAAA
*
94076967 TTCAAAATATTTATAAAAATTTCAAAA
1 TTCAAAATATTTAAAAAAATTTCAAAA
* * *
94076994 TT-TATATTTTTAAAAAAATT
1 TTCAAAATATTTAAAAAAATT
94077014 CTAAAAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 14 0.35
27 19 0.47
28 7 0.17
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (27 bp):
TTCAAAATATTTAAAAAAATTTCAAAA
Found at i:94077019 original size:26 final size:26
Alignment explanation
Indices: 94076940--94077019 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 26
94076930 CAAAATTATT
94076940 TTCAAAA-ATTTAAAATAAATTTTAAAA
1 TTCAAAATATTTAAAA-AAA-TTTAAAA
*
94076967 TTCAAAATATTTATAAAAATTTCAAAA
1 TTCAAAATATTTAAAAAAATTT-AAAA
* * *
94076994 TT-TATATTTTTAAAAAAATTCTAAAA
1 TTCAAAATATTTAAAAAAATT-TAAAA
94077020 AATATATAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
26 21 0.47
27 17 0.38
28 7 0.16
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (26 bp):
TTCAAAATATTTAAAAAAATTTAAAA
Found at i:94079083 original size:18 final size:18
Alignment explanation
Indices: 94079051--94079085 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94079041 GTTCTTATAA
*
94079051 AATAAGTAGTGCACATAC
1 AATAAGTAATGCACATAC
*
94079069 AATAAGTAATTCACATA
1 AATAAGTAATGCACATA
94079086 AACTAGGCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (18 bp):
AATAAGTAATGCACATAC
Found at i:94079151 original size:17 final size:17
Alignment explanation
Indices: 94079129--94079186 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
94079119 TCAAACATTT
94079129 GTTCATATAAAATAACA
1 GTTCATATAAAATAACA
* *
94079146 GTTCATATCAAATGACA
1 GTTCATATAAAATAACA
* ** *
94079163 GCTCATGCAAAATAATA
1 GTTCATATAAAATAACA
94079180 GTTCATA
1 GTTCATA
94079187 CTCTATCATA
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (17 bp):
GTTCATATAAAATAACA
Found at i:94085494 original size:9 final size:10
Alignment explanation
Indices: 94085470--94085494 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
94085460 TAAGATTATC
94085470 ATTTTTTAAA
1 ATTTTTTAAA
94085480 ATTTTTTAAA
1 ATTTTTTAAA
94085490 ATTTT
1 ATTTT
94085495 GAATATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:94085571 original size:6 final size:7
Alignment explanation
Indices: 94085554--94085581 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
94085544 ATATTTAAGT
94085554 TTTTTAA
1 TTTTTAA
94085561 TTTTTAA
1 TTTTTAA
94085568 TTTTTAA
1 TTTTTAA
94085575 TTTTTAA
1 TTTTTAA
94085582 AATTTTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTTAA
Found at i:94086698 original size:41 final size:41
Alignment explanation
Indices: 94086632--94086768 Score: 206
Period size: 41 Copynumber: 3.3 Consensus size: 41
94086622 GTTATATGAC
*
94086632 TTTTAGCGGCGTTTTA-TCGACAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACT-GAAAGCGCCGCTAATGCTCTGGT
94086673 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGAT
1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGG-T
* *
94086715 TTTT-GCGGCGTTTTACCGAAAGCACCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGT
*
94086755 TTTTAGTGGCGTTT
1 TTTTAGCGGCGTTT
94086769 CTATTGCTCT
Statistics
Matches: 89, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
40 5 0.06
41 78 0.88
42 6 0.07
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGT
Found at i:94086820 original size:24 final size:25
Alignment explanation
Indices: 94086754--94086821 Score: 86
Period size: 24 Copynumber: 2.7 Consensus size: 25
94086744 AATGCTCTGG
94086754 TTTTTAGTGGCGTTTCTATTGCTCTAT
1 TTTTTAGTGGCGTTT-T-TTGCTCTAT
* *
94086781 TTTTTAGCGGC-ATTTTTGCTCTA-
1 TTTTTAGTGGCGTTTTTTGCTCTAT
94086804 TTTTTAGTGGCGTTTTTT
1 TTTTTAGTGGCGTTTTTT
94086822 AGTAAAAACG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 10 0.28
24 13 0.36
25 1 0.03
26 2 0.06
27 10 0.28
ACGTcount: A:0.10, C:0.13, G:0.19, T:0.57
Consensus pattern (25 bp):
TTTTTAGTGGCGTTTTTTGCTCTAT
Found at i:94087248 original size:36 final size:37
Alignment explanation
Indices: 94087208--94087286 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 37
94087198 GCATATATAT
*
94087208 TATATACGAA-AAAACCATGCACCCATACTTATATTA
1 TATATACGAACAAAACCATGCACACATACTTATATTA
* *
94087244 TATATA-TAACAAAACCATGCACACATATTTATATTA
1 TATATACGAACAAAACCATGCACACATACTTATATTA
94087280 TATATAC
1 TATATAC
94087287 ACCTACTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 2 0.05
36 36 0.95
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.32
Consensus pattern (37 bp):
TATATACGAACAAAACCATGCACACATACTTATATTA
Found at i:94089321 original size:27 final size:27
Alignment explanation
Indices: 94089283--94089338 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
94089273 CGACGGTGAC
94089283 CAATGAAAGTATGCAGGTGAATGCAAG
1 CAATGAAAGTATGCAGGTGAATGCAAG
94089310 CAATGAAAGTATGCAGGTGAATGCAAG
1 CAATGAAAGTATGCAGGTGAATGCAAG
94089337 CA
1 CA
94089339 CTCACGATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.12, G:0.29, T:0.18
Consensus pattern (27 bp):
CAATGAAAGTATGCAGGTGAATGCAAG
Found at i:94089636 original size:14 final size:11
Alignment explanation
Indices: 94089602--94089629 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
94089592 TTAGAAATTA
94089602 CCACCATTTTG
1 CCACCATTTTG
94089613 CCACCATTTTG
1 CCACCATTTTG
94089624 CCACCA
1 CCACCA
94089630 AACTTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.43, G:0.07, T:0.29
Consensus pattern (11 bp):
CCACCATTTTG
Found at i:94090323 original size:13 final size:13
Alignment explanation
Indices: 94090305--94090329 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94090295 CACATAATCG
94090305 ATAAAAATTTTCC
1 ATAAAAATTTTCC
94090318 ATAAAAATTTTC
1 ATAAAAATTTTC
94090330 ATGCAATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAAAAATTTTCC
Found at i:94097882 original size:18 final size:18
Alignment explanation
Indices: 94097840--94097883 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
94097830 CACATTTTGG
* *
94097840 CAAATTAATACAATTTGC
1 CAAATTAATACAAATTAC
* *
94097858 CATATTAATACAAATTAT
1 CAAATTAATACAAATTAC
94097876 CAAATTAA
1 CAAATTAA
94097884 CATAGTTCAC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (18 bp):
CAAATTAATACAAATTAC
Found at i:94098250 original size:34 final size:36
Alignment explanation
Indices: 94098207--94098289 Score: 125
Period size: 36 Copynumber: 2.4 Consensus size: 36
94098197 CTCACGCATA
*
94098207 TATATTATATAT-GAA-AAAACCATGCACCCATATT
1 TATATTATATATAGAACAAAACCATGCACACATATT
*
94098241 TATATTATATATATAACAAAACCATGCACACATATT
1 TATATTATATATAGAACAAAACCATGCACACATATT
*
94098277 GATATTATATATA
1 TATATTATATATA
94098290 CACCTACTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
34 12 0.27
35 2 0.05
36 30 0.68
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (36 bp):
TATATTATATATAGAACAAAACCATGCACACATATT
Found at i:94100323 original size:27 final size:27
Alignment explanation
Indices: 94100285--94100367 Score: 166
Period size: 27 Copynumber: 3.1 Consensus size: 27
94100275 CGACGGTGAC
94100285 CAATGAAAGTATGCAGGTGAATGCAAG
1 CAATGAAAGTATGCAGGTGAATGCAAG
94100312 CAATGAAAGTATGCAGGTGAATGCAAG
1 CAATGAAAGTATGCAGGTGAATGCAAG
94100339 CAATGAAAGTATGCAGGTGAATGCAAG
1 CAATGAAAGTATGCAGGTGAATGCAAG
94100366 CA
1 CA
94100368 CTCACGATGA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.41, C:0.12, G:0.29, T:0.18
Consensus pattern (27 bp):
CAATGAAAGTATGCAGGTGAATGCAAG
Found at i:94108032 original size:21 final size:21
Alignment explanation
Indices: 94108006--94108046 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
94107996 AGACGAGCGA
* *
94108006 TACTCCACAATAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
94108027 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
94108047 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:94111576 original size:20 final size:19
Alignment explanation
Indices: 94111547--94111586 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
94111537 ATATATCCTG
94111547 ATTTATTTGATTCTAATCA
1 ATTTATTTGATTCTAATCA
*
94111566 ATTTAATTTGATTTTAATCA
1 ATTT-ATTTGATTCTAATCA
94111586 A
1 A
94111587 ATTGATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (19 bp):
ATTTATTTGATTCTAATCA
Found at i:94112962 original size:19 final size:22
Alignment explanation
Indices: 94112923--94112962 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
94112913 AGAAACCCAA
94112923 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
94112945 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
94112963 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:94113060 original size:27 final size:28
Alignment explanation
Indices: 94113024--94113163 Score: 150
Period size: 27 Copynumber: 5.2 Consensus size: 28
94113014 AGCATGACTG
*
94113024 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGACAGAGCCA
*
94113050 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGACAGAGCCA
*
94113078 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGACAGAGCCA
*
94113105 CCAGAT-CAGATATTTGTGGA-AGAGCCA
1 CCAGATACAGATATATGT-GACAGAGCCA
* * *
94113132 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGACAGAGCCA
94113159 CCAGA
1 CCAGA
94113164 ACGCTTCCTC
Statistics
Matches: 102, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
26 6 0.06
27 78 0.76
28 18 0.18
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGACAGAGCCA
Found at i:94113083 original size:54 final size:54
Alignment explanation
Indices: 94113024--94113163 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
94113014 AGCATGACTG
* *
94113024 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGAAGAGCCA
* * *
94113078 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGAAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGAAGAGCCA
* * * *
94113132 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGACAGAGCCACCAGA
94113164 ACGCTTCCTC
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 59 0.77
55 18 0.23
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGAAGAGCCA
Found at i:94114820 original size:26 final size:26
Alignment explanation
Indices: 94114782--94114891 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
94114772 CATGAAATTC
*
94114782 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
94114808 TTATCATAGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
* *
94114834 TTATCAGGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
94114860 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
94114886 TTATCA
1 TTATCA
94114892 ATTTGTAACA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:94116093 original size:2 final size:2
Alignment explanation
Indices: 94116086--94116110 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
94116076 AATAGTTGTG
94116086 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
94116111 ATCACAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94116982 original size:24 final size:24
Alignment explanation
Indices: 94116950--94116995 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
94116940 TCATTATAGA
*
94116950 TTGAGCATTAGCAGCGTTTTTCGC
1 TTGAGCATTAGCAGCGCTTTTCGC
*
94116974 TTGAGCATTAGCGGCGCTTTTC
1 TTGAGCATTAGCAGCGCTTTTC
94116996 AAAAAGAGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (24 bp):
TTGAGCATTAGCAGCGCTTTTCGC
Found at i:94120075 original size:20 final size:21
Alignment explanation
Indices: 94120050--94120088 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
94120040 TCAAACCTTA
94120050 AACCTCAAA-CTTGAATTTTG
1 AACCTCAAATCTTGAATTTTG
94120070 AACCTCAAATCTTGAATTT
1 AACCTCAAATCTTGAATTT
94120089 AGGGTTCGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (21 bp):
AACCTCAAATCTTGAATTTTG
Found at i:94121350 original size:15 final size:15
Alignment explanation
Indices: 94121330--94121361 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
94121320 ATAATACACC
94121330 AATTGACAACTAGCT
1 AATTGACAACTAGCT
94121345 AATTGACAACTAGCT
1 AATTGACAACTAGCT
94121360 AA
1 AA
94121362 CCATCACAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (15 bp):
AATTGACAACTAGCT
Found at i:94122040 original size:43 final size:42
Alignment explanation
Indices: 94121993--94122186 Score: 219
Period size: 43 Copynumber: 4.5 Consensus size: 42
94121983 TATCCCAGAT
** *
94121993 ATGGTCTTACATGTTTTCACATACCGATGCCAATAGCCTAG-C
1 ATGGTCTTACATGTAATCACATAACGATGCCAAT-GCCTAGAC
* * * *
94122035 TATGGTCTTACAGGAAATCACATAATGATGTCAATGTCCTAGAC
1 -ATGGTCTTACATGTAATCACATAACGATGCCAATG-CCTAGAC
* *
94122079 ATGGTCTTACATGTAATCACATAAAGATGCCAGTGCCTTAGAC
1 ATGGTCTTACATGTAATCACATAACGATGCCAATGCC-TAGAC
** *
94122122 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCAAGAC
1 ATGGTCTTACATGTAATCACATAACGATGCCAATG-CCTAGAC
*
94122165 ATGGTCTTACACGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
94122187 CTCGATAATC
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
42 3 0.02
43 123 0.95
44 3 0.02
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCACATAACGATGCCAATGCCTAGAC
Found at i:94122140 original size:86 final size:86
Alignment explanation
Indices: 94121993--94122186 Score: 250
Period size: 86 Copynumber: 2.3 Consensus size: 86
94121983 TATCCCAGAT
** ** *
94121993 ATGGTCTTACATGTTTTCACATACCGATGCCAATAGCCTAGCTATGGTCTTACAGGAAATCACAT
1 ATGGTCTTACATGTAATCACATAAAGATGCCAATAGCCTAGCTATGGTCTTACAGCAAATCACAT
* * *
94122058 AATGATGTCAATGTCCTAGAC
66 AACGATGCCAATGTCCAAGAC
*
94122079 ATGGTCTTACATGTAATCACATAAAGATGCCAGT-GCCTTAGAC-ATGGTCTTACA-CATAATCA
1 ATGGTCTTACATGTAATCACATAAAGATGCCAATAGCC-TAG-CTATGGTCTTACAGCA-AATCA
94122141 CATAACGATGCCAATGTCCAAGAC
63 CATAACGATGCCAATGTCCAAGAC
*
94122165 ATGGTCTTACACGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
94122187 CTCGATAATC
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
85 4 0.04
86 90 0.95
87 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (86 bp):
ATGGTCTTACATGTAATCACATAAAGATGCCAATAGCCTAGCTATGGTCTTACAGCAAATCACAT
AACGATGCCAATGTCCAAGAC
Found at i:94128198 original size:42 final size:43
Alignment explanation
Indices: 94128101--94128255 Score: 240
Period size: 43 Copynumber: 3.6 Consensus size: 43
94128091 GCTGGTATTA
* *
94128101 TATTTGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
94128144 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT-ATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
94128186 TATTCGGGCCTTCGTGCCTAGCAGTCTGCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
94128229 TATTCGGGCCTTTGTGCCTAGCAGGCT
1 TATTCGGGCCTTCGTGCCTAGCAGGCT
94128256 ATGATTCTGG
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
42 38 0.37
43 64 0.63
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:94128286 original size:45 final size:45
Alignment explanation
Indices: 94128229--94128325 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
94128219 CGGTGATGTG
* * * * *
94128229 TATTCGGGCCTTTGTGCCTAGCAGGCTATGATTCTGGTG-GAATAC
1 TATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG-ATAC
*
94128274 TATTCGGACCTTTGAGCCTAGCATGCTATAATGCCGGTGAGATAC
1 TATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
94128319 TATTCGG
1 TATTCGG
94128326 GCTTTCAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 44 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (45 bp):
TATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:94133631 original size:56 final size:55
Alignment explanation
Indices: 94133508--94133648 Score: 158
Period size: 56 Copynumber: 2.5 Consensus size: 55
94133498 TGCGACATAG
* * * **
94133508 CCGTGGGCGAGCCTGCCAAAATAACACGGGTGTGCGACATGCCCGTGCCTTGAAA
1 CCGTGGGTGAACCTGCCAAAATAACACGGGTGTGCGACACGCCCGTGCCAAGAAA
* * * *
94133563 CCAT-GGTCGAACCTGTCAAATTAACAACGGGTGTGCGACACGCCCGTGCCAAGCAA
1 CCGTGGGT-GAACCTGCCAAAATAAC-ACGGGTGTGCGACACGCCCGTGCCAAGAAA
* *
94133619 CTGTGGGTGAACCTGCCAAAACAACACGGG
1 CCGTGGGTGAACCTGCCAAAATAACACGGG
94133649 CGTGGACCTT
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
54 2 0.03
55 22 0.32
56 42 0.61
57 3 0.04
ACGTcount: A:0.27, C:0.29, G:0.28, T:0.16
Consensus pattern (55 bp):
CCGTGGGTGAACCTGCCAAAATAACACGGGTGTGCGACACGCCCGTGCCAAGAAA
Found at i:94139999 original size:32 final size:32
Alignment explanation
Indices: 94139932--94140143 Score: 253
Period size: 32 Copynumber: 6.6 Consensus size: 32
94139922 CCCAAGGTGC
* * *
94139932 ACATTCCCTTTTCAAATGGTACACATAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* *
94139965 ACATTTCCTTTTCAAGTGTACACACAAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
94139997 ACATTTCCTTTTCACGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * * *
94140029 ACAAATCCTTTTCAAGTGTATATACAATGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
94140061 ACGTTTCCTTTTCAAGTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
***
94140093 ACAAACCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
94140125 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
94140144 CAAACTTTCG
Statistics
Matches: 149, Mismatches: 30, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
32 134 0.90
33 15 0.10
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:94147052 original size:17 final size:18
Alignment explanation
Indices: 94146999--94147176 Score: 220
Period size: 17 Copynumber: 9.9 Consensus size: 18
94146989 AATCATATCT
*
94146999 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
94147018 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
94147036 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
94147053 TCTAAGATTG-TATCACA
1 TCTAAGATTGCTATCATA
*
94147070 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
94147088 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
* *
94147105 TCTAAGATTGCAATCACA
1 TCTAAGATTGCTATCATA
94147123 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
* *
94147140 TCTAGGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
*
94147159 TGTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
94147177 TGAAGATTAT
Statistics
Matches: 139, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
17 62 0.45
18 46 0.33
19 31 0.22
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:94147057 original size:35 final size:35
Alignment explanation
Indices: 94146999--94147168 Score: 225
Period size: 35 Copynumber: 4.8 Consensus size: 35
94146989 AATCATATCT
* *
94146999 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-CTATCATATCTAAGATTG-TATCATA
*
94147036 TCTAAGATTG-TATCATATCTAAGATTGTATCACA
1 TCTAAGATTGCTATCATATCTAAGATTGTATCATA
*
94147070 TCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGTATCATA
* *
94147105 TCTAAGATTGCAATCACATCTAAGATTGTATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGTATCATA
* * *
94147140 TCTAGGATTGCATATCACATGTAAGATTG
1 TCTAAGATTGC-TATCATATCTAAGATTG
94147169 CATATCATTG
Statistics
Matches: 123, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
34 15 0.12
35 83 0.67
36 15 0.12
37 10 0.08
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (35 bp):
TCTAAGATTGCTATCATATCTAAGATTGTATCATA
Found at i:94147078 original size:52 final size:53
Alignment explanation
Indices: 94146999--94147175 Score: 243
Period size: 52 Copynumber: 3.3 Consensus size: 53
94146989 AATCATATCT
*
94146999 TCTAAGATTGTATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTG-ATATCACATCTAAGATTGCAATCATATCTAAGATTGTATCATA
94147053 TCTAAGATTG-TATCACATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGATATCACATCTAAGATTGCAATCATATCTAAGATTGTATCATA
* * *
94147105 TCTAAGATTGCA-ATCACATCTAAGATTG-TATCATATCTAGGATTGCATATCACA
1 TCTAAGATTG-ATATCACATCTAAGATTGCAATCATATCTAAGATTG--TATCATA
*
94147159 TGTAAGATTGCATATCA
1 TCTAAGATTG-ATATCA
94147176 TTGAAGATTA
Statistics
Matches: 113, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
52 66 0.58
53 16 0.14
54 27 0.24
55 4 0.04
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (53 bp):
TCTAAGATTGATATCACATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:94147595 original size:26 final size:26
Alignment explanation
Indices: 94147566--94147673 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
94147556 TGGTACAAAT
94147566 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
94147592 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94147618 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
94147644 TGATAATGGGTTAGGTAAATGCTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94147670 TGAT
1 TGAT
94147674 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:94149188 original size:26 final size:26
Alignment explanation
Indices: 94149159--94149211 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
94149149 TTTACAGTTT
94149159 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
94149185 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
94149211 T
1 T
94149212 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:94151055 original size:207 final size:207
Alignment explanation
Indices: 94150598--94151598 Score: 1673
Period size: 207 Copynumber: 4.8 Consensus size: 207
94150588 AAATCTGCTT
* * * *
94150598 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * * *
94150663 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAATGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** * *
94150728 GGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
94150792 GGAGATGCCAAA
196 GGAGATGCCAAA
94150804 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
94150869 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
94150934 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
94150999 GGAGATGCCAAA
196 GGAGATGCCAAA
*
94151011 CTTCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * *
94151076 GTGAAAGCCAAATAAACTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
94151141 GGATATTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCTGTCGAATAA
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
94151206 GGAGATGCCAAA
196 GGAGATGCCAAA
*
94151218 C-TCTGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACA
1 CTTC-GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACA
* * *
94151282 CATGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCATAAGGATGCCAAACCATCT
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
* *
94151347 TGGATCTTGCTTCAGTATAAACATCTGAAGGCCAAATCTGCTATGTGTCTGCCCTCTGTCGAATA
130 TGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATA
* *
94151412 TAGAGACGCCAAA
195 TGGAGATGCCAAA
* * *
94151425 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
94151490 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
94151555 GGATCTTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATG
94151599 CTTTAACCTG
Statistics
Matches: 750, Mismatches: 42, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
206 129 0.17
207 619 0.83
208 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGATGCCAAA
Found at i:94151702 original size:84 final size:83
Alignment explanation
Indices: 94151604--94151892 Score: 413
Period size: 84 Copynumber: 3.4 Consensus size: 83
94151594 CTATGCTTTA
*
94151604 ACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTAGGGA
*
94151669 GATAAGATCCGTAATTTT
66 GATAAGATCTGTAATTTT
*
94151687 GACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCATCGTT-GATCTGTTCCACTACTGCTT
1 -ACCTGTTACCCTACTGCTTAGGGGATTAAGGC--G-CATC-TTCGATCTGCTCCACTACTGCTT
94151751 AGGGAGATAAGATCTGTAATTTT
61 AGGGAGATAAGATCTGTAATTTT
*
94151774 AGCCTGTTACCCTACTGCTTAGGAGG-TTAAGGCG-AGTCTTCGATCTGCTCCATTACTGCTTAG
1 A-CCTGTTACCCTACTGCTTAGG-GGATTAAGGCGCA-TCTTCGATCTGCTCCACTACTGCTTAG
* * *
94151837 AGAGATAAGATCTGCAAATTTA
63 GGAGATAAGATCTG-TAATTTT
94151859 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC
94151893 TGAATTTTGT
Statistics
Matches: 186, Mismatches: 8, Indels: 21
0.87 0.04 0.10
Matches are distributed among these distances:
83 5 0.03
84 95 0.51
85 7 0.04
86 2 0.01
87 73 0.39
88 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (83 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCTGTAATTTT
Done.