Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 322 of 335
Found at i:94674893 original size:13 final size:13
Alignment explanation
Indices: 94674858--94674894 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
94674848 TTAAAATTTC
94674858 AAAA-AAAAA-AA
1 AAAAGAAAAAGAA
94674869 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
*
94674882 AAAAGAAGAAGAA
1 AAAAGAAAAAGAA
94674895 TAGAAACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 4 0.17
12 5 0.22
13 14 0.61
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:94675780 original size:6 final size:6
Alignment explanation
Indices: 94675769--94675799 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
94675759 TGATTGAGCA
94675769 AAAAAG AAAAAG AAAAAG AAAAA- AAAAAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
94675800 GAGTCGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:94682079 original size:21 final size:22
Alignment explanation
Indices: 94682053--94682127 Score: 80
Period size: 24 Copynumber: 3.3 Consensus size: 22
94682043 AAATAAGTTG
*
94682053 TATAAGA-AAATTTTAAATAAA
1 TATAAGACAAATTTAAAATAAA
*
94682074 TATAAGACAAGTTTAAAATAATA
1 TATAAGACAAATTTAAAATAA-A
* *
94682097 TATATAAAGAAATTTAAAATAAA
1 TATA-AGACAAATTTAAAATAAA
94682120 TATTAAGA
1 TA-TAAGA
94682128 GGCTCAAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
21 7 0.16
22 11 0.25
23 10 0.23
24 16 0.36
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (22 bp):
TATAAGACAAATTTAAAATAAA
Found at i:94682092 original size:46 final size:47
Alignment explanation
Indices: 94682037--94682127 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 47
94682027 CAAATAAGAG
* *
94682037 AGTTTAAAATAAGT-TGTAT-AAGAAAATTTTAAATAAATA-TAAGACA
1 AGTTTAAAATAA-TATATATAAAG-AAATTTAAAATAAATATTAAGACA
94682083 AGTTTAAAATAATATATATAAAGAAATTTAAAATAAATATTAAGA
1 AGTTTAAAATAATATATATAAAGAAATTTAAAATAAATATTAAGA
94682128 GGCTCAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
45 1 0.03
46 31 0.77
47 8 0.20
ACGTcount: A:0.57, C:0.01, G:0.09, T:0.33
Consensus pattern (47 bp):
AGTTTAAAATAATATATATAAAGAAATTTAAAATAAATATTAAGACA
Found at i:94682101 original size:25 final size:23
Alignment explanation
Indices: 94682030--94682177 Score: 74
Period size: 24 Copynumber: 6.2 Consensus size: 23
94682020 TTTAAAACAA
* *
94682030 ATAAGAGAGTTTAAAATAAGT-TGT
1 ATAAGA-AATTTAAAATAA-TATAT
*
94682054 ATAAGAAAATTTTAAAT-A-A-AT
1 ATAAG-AAATTTAAAATAATATAT
94682075 ATAAGACAAGTTTAAAATAATATAT
1 ATAAGA-AA-TTTAAAATAATATAT
94682100 ATAAAGAAATTTAAAATAA-ATAT
1 AT-AAGAAATTTAAAATAATATAT
*** *
94682123 -TAAGAGGCTCAAAATAATAATATGT
1 ATAAGAAATTTAAAATAAT-ATA--T
*
94682148 AAAAAGAAATTTAAAATCAATAATAT
1 -ATAAGAAATTTAAAAT-AAT-ATAT
94682174 ATAA
1 ATAA
94682178 AATTTTTTAA
Statistics
Matches: 95, Mismatches: 14, Indels: 29
0.69 0.10 0.21
Matches are distributed among these distances:
20 1 0.01
21 20 0.21
22 8 0.08
23 9 0.09
24 24 0.25
25 11 0.12
26 5 0.05
27 10 0.11
28 7 0.07
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.30
Consensus pattern (23 bp):
ATAAGAAATTTAAAATAATATAT
Found at i:94684591 original size:64 final size:64
Alignment explanation
Indices: 94684510--94684693 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
94684500 GAGACATTAT
* *
94684510 AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 AATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
94684574 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 AATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
94684639 TA
63 TA
* * *
94684641 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 AA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAG
94684694 TCGAACTATA
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
66 21 0.21
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
AATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:94685028 original size:28 final size:27
Alignment explanation
Indices: 94684990--94685141 Score: 132
Period size: 28 Copynumber: 5.6 Consensus size: 27
94684980 AAACGAAAGG
* *
94684990 CACTTAGTGTGCGAAGTATTGAGGATGG
1 CACTTAGTGTGCGAAGTATCGA-GATGA
* *
94685018 CACTTAGTGTGC-AAGACATCCGAAATGA
1 CACTTAGTGTGCGAAG-TAT-CGAGATGA
** *
94685046 CAC--AGT-TATGAAGTATTGATGATGA
1 CACTTAGTGTGCGAAGTATCGA-GATGA
** *
94685071 CACTTAGTGTGCGAAACATCCGAAATGA
1 CACTTAGTGTGCGAAGTAT-CGAGATGA
94685099 CACTTAGTGTGCGAAGTATCGAGGATGA
1 CACTTAGTGTGCGAAGTATCGA-GATGA
94685127 CACTTAGTGTGCGAA
1 CACTTAGTGTGCGAA
94685142 ACATCCGGTA
Statistics
Matches: 97, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
24 2 0.02
25 10 0.10
26 6 0.06
27 9 0.09
28 66 0.68
29 4 0.04
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.26
Consensus pattern (27 bp):
CACTTAGTGTGCGAAGTATCGAGATGA
Found at i:94685158 original size:28 final size:28
Alignment explanation
Indices: 94685067--94685166 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 28
94685057 AGTATTGATG
*
94685067 ATGACACTTAGTGTGCGAAACATCCGAA
1 ATGACACTTAGTGTGCGAAACATCCGGA
** *
94685095 ATGACACTTAGTGTGCGAAGTAT-CGAGG
1 ATGACACTTAGTGTGCGAAACATCCG-GA
*
94685123 ATGACACTTAGTGTGCGAAACATCCGGT
1 ATGACACTTAGTGTGCGAAACATCCGGA
*
94685151 AT-AGCACTTAGCGTGC
1 ATGA-CACTTAGTGTGC
94685167 AAGACATTGA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
27 3 0.05
28 56 0.92
29 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (28 bp):
ATGACACTTAGTGTGCGAAACATCCGGA
Found at i:94685161 original size:56 final size:56
Alignment explanation
Indices: 94684990--94685148 Score: 236
Period size: 53 Copynumber: 2.9 Consensus size: 56
94684980 AAACGAAAGG
*
94684990 CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGC-AAGACATCCGAAATGA
1 CACTTAGTGTGCGAAGTATTGAGGATGACACTTAGTGTGCGAA-ACATCCGAAATGA
** *
94685046 CAC--AGT-TATGAAGTATTGATGATGACACTTAGTGTGCGAAACATCCGAAATGA
1 CACTTAGTGTGCGAAGTATTGAGGATGACACTTAGTGTGCGAAACATCCGAAATGA
*
94685099 CACTTAGTGTGCGAAGTATCGAGGATGACACTTAGTGTGCGAAACATCCG
1 CACTTAGTGTGCGAAGTATTGAGGATGACACTTAGTGTGCGAAACATCCG
94685149 GTATAGCACT
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
53 43 0.47
54 5 0.05
55 3 0.03
56 40 0.44
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (56 bp):
CACTTAGTGTGCGAAGTATTGAGGATGACACTTAGTGTGCGAAACATCCGAAATGA
Found at i:94696135 original size:16 final size:16
Alignment explanation
Indices: 94696114--94696144 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
94696104 CATATTTGAG
94696114 TTCAGCAACAATTTGC
1 TTCAGCAACAATTTGC
94696130 TTCAGCAACAATTTG
1 TTCAGCAACAATTTG
94696145 ATTAAATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (16 bp):
TTCAGCAACAATTTGC
Found at i:94697541 original size:18 final size:18
Alignment explanation
Indices: 94697518--94697555 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
94697508 TACCACCGTT
94697518 TATGACACTATTCACGTA
1 TATGACACTATTCACGTA
94697536 TATGACACTATTCACGTA
1 TATGACACTATTCACGTA
94697554 TA
1 TA
94697556 CAATAGTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (18 bp):
TATGACACTATTCACGTA
Found at i:94699672 original size:28 final size:28
Alignment explanation
Indices: 94699640--94699694 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
94699630 CAAGGCTAAC
94699640 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
94699668 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
94699695 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:94702397 original size:33 final size:33
Alignment explanation
Indices: 94702360--94702426 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
94702350 ATTCAGGGAG
*
94702360 TTGAAATAAACTTTCTCTATTGATTCCATTAAT
1 TTGAAACAAACTTTCTCTATTGATTCCATTAAT
94702393 TTGAAACAAACTTTCTCTATTGATTCCATTAAT
1 TTGAAACAAACTTTCTCTATTGATTCCATTAAT
94702426 T
1 T
94702427 CTAACGAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (33 bp):
TTGAAACAAACTTTCTCTATTGATTCCATTAAT
Found at i:94708344 original size:28 final size:28
Alignment explanation
Indices: 94708312--94708366 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
94708302 CAAGGCTGAC
94708312 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
94708340 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
94708367 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:94712427 original size:2 final size:2
Alignment explanation
Indices: 94712420--94712451 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
94712410 ATATTTACAG
94712420 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94712452 TGTTTACGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94720171 original size:35 final size:35
Alignment explanation
Indices: 94720124--94720195 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
94720114 ACATACGCTC
*
94720124 ATTTATTGTTGTGTAGGGTTGGATGGATATTTGAT
1 ATTTATTATTGTGTAGGGTTGGATGGATATTTGAT
94720159 ATTTATTATTGTGTAGGGTTGGATGGATATTTGAT
1 ATTTATTATTGTGTAGGGTTGGATGGATATTTGAT
94720194 AT
1 AT
94720196 CCTATTTGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (35 bp):
ATTTATTATTGTGTAGGGTTGGATGGATATTTGAT
Found at i:94721849 original size:22 final size:22
Alignment explanation
Indices: 94721824--94721869 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
94721814 ACGTTGGCGA
*
94721824 TCCTCCAGTGAATTAAGTGTGT
1 TCCTCCAGCGAATTAAGTGTGT
*
94721846 TCCTCTAGCGAATTAAGTGTGT
1 TCCTCCAGCGAATTAAGTGTGT
94721868 TC
1 TC
94721870 GGTTGCTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (22 bp):
TCCTCCAGCGAATTAAGTGTGT
Found at i:94723085 original size:25 final size:25
Alignment explanation
Indices: 94723056--94723106 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
94723046 CATTGAGTTT
*
94723056 CAAAATCAAACTATGGTTTTCTAAA
1 CAAAATCAAACTACGGTTTTCTAAA
94723081 CAAAATCAAACTACGGTTTTCTAAA
1 CAAAATCAAACTACGGTTTTCTAAA
94723106 C
1 C
94723107 TTTGTTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (25 bp):
CAAAATCAAACTACGGTTTTCTAAA
Found at i:94723901 original size:29 final size:29
Alignment explanation
Indices: 94723854--94723910 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
94723844 ATTTTATTTT
*
94723854 TATATAACATAAATTACATAATATATAAAAA
1 TATATAACATAAATAACAT-AT-TATAAAAA
94723885 TATATAA-A-AAATAACATATTATAAAA
1 TATATAACATAAATAACATATTATAAAA
94723911 TTAGAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 7 0.28
28 2 0.08
29 8 0.32
30 1 0.04
31 7 0.28
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (29 bp):
TATATAACATAAATAACATATTATAAAAA
Found at i:94726619 original size:51 final size:51
Alignment explanation
Indices: 94726509--94726632 Score: 151
Period size: 51 Copynumber: 2.4 Consensus size: 51
94726499 AATTTCATCT
* * *
94726509 CAACATTTACATATTATGTCAATTTTATACTGATTTAACAAATTTAGTCCA
1 CAACATTTACATATTCTATCAATTTGATACTGATTTAACAAATTTAGTCCA
* * *
94726560 CAACATTTACACATTCTATCAATTTGAT-CTTGATTTAACAAATTTAGTTCG
1 CAACATTTACATATTCTATCAATTTGATAC-TGATTTAACAAATTTAGTCCA
* * *
94726611 TAATATTTACATGTTCTATCAA
1 CAACATTTACATATTCTATCAA
94726633 CTTTCACGCA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 1 0.02
51 61 0.98
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.42
Consensus pattern (51 bp):
CAACATTTACATATTCTATCAATTTGATACTGATTTAACAAATTTAGTCCA
Found at i:94728154 original size:31 final size:31
Alignment explanation
Indices: 94728079--94728147 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
94728069 TTACAATTCG
* *
94728079 GTCATTGAACTGTTCGAAAGTATTTATTTAA
1 GTCATTGAACTATTCAAAAGTATTTATTTAA
*
94728110 GTCATTGAACTATTCAAAAGTTTTTATTTAA
1 GTCATTGAACTATTCAAAAGTATTTATTTAA
*
94728141 GTTATTG
1 GTCATTG
94728148 GGCTATTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (31 bp):
GTCATTGAACTATTCAAAAGTATTTATTTAA
Found at i:94729675 original size:19 final size:19
Alignment explanation
Indices: 94729651--94729689 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
94729641 AATATTCAAG
94729651 AACATTCTTGTAATGGCCC
1 AACATTCTTGTAATGGCCC
94729670 AACATTCTTGTAATGGCCC
1 AACATTCTTGTAATGGCCC
94729689 A
1 A
94729690 TTTTTGCTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (19 bp):
AACATTCTTGTAATGGCCC
Found at i:94730972 original size:13 final size:13
Alignment explanation
Indices: 94730954--94730983 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
94730944 ATTATTCATT
94730954 TTTTAACATATTA
1 TTTTAACATATTA
*
94730967 TTTTAACATATTG
1 TTTTAACATATTA
94730980 TTTT
1 TTTT
94730984 GAGCTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (13 bp):
TTTTAACATATTA
Found at i:94732570 original size:136 final size:137
Alignment explanation
Indices: 94732326--94732611 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
94732316 TATTGGGCCT
** * *
94732326 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
94732391 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
94732455 CATATGC
131 CATATGC
94732462 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
94732527 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
94732592 CATATGC
131 CATATGC
94732599 AAGCCCATTTGGG
1 AAGCCCATTTGGG
94732612 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 122 0.85
137 22 0.15
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:94732896 original size:25 final size:27
Alignment explanation
Indices: 94732859--94732911 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
94732849 TCAAACATGC
94732859 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
94732885 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
94732911 A
1 A
94732912 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:94734433 original size:26 final size:26
Alignment explanation
Indices: 94734397--94734558 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
94734387 CATGAAATTC
94734397 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
94734423 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
94734449 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
94734475 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
94734501 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
94734527 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
94734553 TTATCA
1 TTATCA
94734559 ATTTGTATCA
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 130 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:94734526 original size:78 final size:78
Alignment explanation
Indices: 94734397--94734558 Score: 306
Period size: 78 Copynumber: 2.1 Consensus size: 78
94734387 CATGAAATTC
94734397 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
94734462 TTTACCTAACCTA
66 TTTACCTAACCTA
* *
94734475 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
94734540 TTTACCTAACCTA
66 TTTACCTAACCTA
94734553 TTATCA
1 TTATCA
94734559 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
TTTACCTAACCTA
Found at i:94739868 original size:15 final size:14
Alignment explanation
Indices: 94739850--94739883 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
94739840 ATGTTATTAT
94739850 TTTATTTTATATTTA
1 TTTATTTTAT-TTTA
*
94739865 TTTATTTTATTTTC
1 TTTATTTTATTTTA
94739879 TTTAT
1 TTTAT
94739884 CAACTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:94741872 original size:20 final size:20
Alignment explanation
Indices: 94741834--94741881 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
94741824 TTAAATTCTA
* **
94741834 AAAGATAAATATATTTAATT
1 AAAGATAAATAAAGATAATT
94741854 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
94741874 AAA-ATAAA
1 AAAGATAAA
94741882 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:94742700 original size:142 final size:142
Alignment explanation
Indices: 94742516--94742802 Score: 574
Period size: 142 Copynumber: 2.0 Consensus size: 142
94742506 AATTGGTATC
94742516 TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
1 TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
94742581 ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
66 ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
94742646 AGCCGATGAATT
131 AGCCGATGAATT
94742658 TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
1 TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
94742723 ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
66 ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
94742788 AGCCGATGAATT
131 AGCCGATGAATT
94742800 TCA
1 TCA
94742803 CCCAACATAG
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 145 1.00
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.39
Consensus pattern (142 bp):
TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
AGCCGATGAATT
Found at i:94743451 original size:39 final size:37
Alignment explanation
Indices: 94743354--94743451 Score: 99
Period size: 39 Copynumber: 2.6 Consensus size: 37
94743344 TATGGTATTT
* * * *
94743354 AAAATATATATAT-ATATATGTATATAATAGTATTTA
1 AAAATATATACATAATATATATATATAATAGCATTAA
* * * *
94743390 AGAATATATACATAAGAAATATATAACTAATGGCATTAA
1 AAAATATATACATAATATATATAT-A-TAATAGCATTAA
94743429 AAAATATATACATAATATATATA
1 AAAATATATACATAATATATATA
94743452 AAATACCTAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
36 11 0.23
37 7 0.15
38 1 0.02
39 29 0.60
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (37 bp):
AAAATATATACATAATATATATATATAATAGCATTAA
Found at i:94743989 original size:16 final size:16
Alignment explanation
Indices: 94743970--94744056 Score: 67
Period size: 16 Copynumber: 5.7 Consensus size: 16
94743960 TTCTTCTTTT
94743970 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
*
94743986 TTTTTTTTGGGGTAGG
1 TTTTTTTTGGGTTAGG
*
94744002 TTTTTCTTT---TT--C
1 TTTTT-TTTGGGTTAGG
*** * *
94744014 TTTTTTTTTTCTTTGT
1 TTTTTTTTGGGTTAGG
94744030 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
94744046 TTTTTTTTGGG
1 TTTTTTTTGGG
94744057 GGCTTAATGG
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
11 3 0.05
12 5 0.09
14 3 0.05
16 42 0.75
17 3 0.05
ACGTcount: A:0.03, C:0.03, G:0.23, T:0.70
Consensus pattern (16 bp):
TTTTTTTTGGGTTAGG
Found at i:94744018 original size:44 final size:45
Alignment explanation
Indices: 94743957--94744050 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 45
94743947 AGGTTTTTCT
* *
94743957 TTTTTCTTCTTTTTTTTTTTTGGGTTAGGTTTTTTTTGGGGTAGG
1 TTTTTCTTCTTTCTTTTTTTTGGCTTAGGTTTTTTTTGGGGTAGG
** * * *
94744002 TTTTTCTT-TTTCTTTTTTTTTTCTTTGTTTTTTTTTGGGTTAGG
1 TTTTTCTTCTTTCTTTTTTTTGGCTTAGGTTTTTTTTGGGGTAGG
94744046 TTTTT
1 TTTTT
94744051 TTTGGGGGCT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 34 0.81
45 8 0.19
ACGTcount: A:0.03, C:0.05, G:0.18, T:0.73
Consensus pattern (45 bp):
TTTTTCTTCTTTCTTTTTTTTGGCTTAGGTTTTTTTTGGGGTAGG
Found at i:94744022 original size:17 final size:17
Alignment explanation
Indices: 94744002--94744037 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
94743992 TTGGGGTAGG
94744002 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
94744019 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
94744036 TT
1 TT
94744038 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:94744032 original size:12 final size:11
Alignment explanation
Indices: 94744002--94744035 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
94743992 TTGGGGTAGG
94744002 TTTTTCTTTTTC
1 TTTTT-TTTTTC
94744014 TTTTTTTTTTC
1 TTTTTTTTTTC
94744025 TTTGTTTTTTT
1 TTT-TTTTTTT
94744036 TTGGGTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:94744788 original size:88 final size:86
Alignment explanation
Indices: 94744682--94744923 Score: 292
Period size: 88 Copynumber: 2.8 Consensus size: 86
94744672 ACAGACATTA
* *
94744682 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAG-GCGTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
94744747 TGATTTTTTG-A-AACTTAACTTG
64 TGA-TTCTTGAACAACGTAAATTG
** *** * *
94744769 AAAAGCAGATTTTGAAAATACCTCGATATGTGACTGGAGGTTCAACTCACCTCTCGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTC-AGGCGTGAC-CGAGGCTCAACTCACCTCTCGCAATATGAG
94744834 TTGATTCTTGAACAACGTAAATTG
63 TTGATTCTTGAACAACGTAAATTG
94744858 AAAACAGAAATTGAAAATACCTCA-GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCAGGCGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
94744922 GA
65 GA
94744924 AATTAAAACA
Statistics
Matches: 131, Mismatches: 18, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
86 37 0.28
87 11 0.08
88 69 0.53
89 14 0.11
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (86 bp):
AAAACAGAAATTGAAAATACCTCAGGCGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTCTTGAACAACGTAAATTG
Found at i:94744986 original size:72 final size:71
Alignment explanation
Indices: 94744852--94744995 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 71
94744842 TGAACAACGT
* * * *
94744852 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
94744917 GAGTTG
66 GAGTTG
*
94744923 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
94744988 TGAGTTG
65 TGAGTTG
94744995 A
1 A
94744996 TTTTGAAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 8 0.12
72 59 0.88
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:94751701 original size:142 final size:142
Alignment explanation
Indices: 94751517--94751803 Score: 574
Period size: 142 Copynumber: 2.0 Consensus size: 142
94751507 AATTGGTATC
94751517 TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
1 TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
94751582 ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
66 ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
94751647 AGCCGATGAATT
131 AGCCGATGAATT
94751659 TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
1 TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
94751724 ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
66 ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
94751789 AGCCGATGAATT
131 AGCCGATGAATT
94751801 TCA
1 TCA
94751804 CCCAACATAG
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 145 1.00
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.39
Consensus pattern (142 bp):
TCATAAACATTTGTTGACTTGATTTTCAAAAATACGAGTTCAATATAATATTTAATCGTGATCCG
ATTGAAAAATGAGAATTTTTAGTTTTCGATTTCTTTTTAGAAAGGGTGTCCCGTTTTTTAACACA
AGCCGATGAATT
Found at i:94752982 original size:15 final size:15
Alignment explanation
Indices: 94752964--94752998 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
94752954 TCTTCTTTTT
*
94752964 TTTTTTTGGGTTAGG
1 TTTTTTTGGGGTAGG
94752979 TTTTTTTGGGGTAGG
1 TTTTTTTGGGGTAGG
94752994 TTTTT
1 TTTTT
94752999 CTGTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.00, G:0.31, T:0.63
Consensus pattern (15 bp):
TTTTTTTGGGGTAGG
Found at i:94759488 original size:34 final size:34
Alignment explanation
Indices: 94759445--94759513 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
94759435 TAAGAAAACG
94759445 TAAAAAAATTAATTAAGTTTTTGTATTAAATTTA
1 TAAAAAAATTAATTAAGTTTTTGTATTAAATTTA
94759479 TAAAAAAATTAATTAAGTTTTTGTATTAAATTTA
1 TAAAAAAATTAATTAAGTTTTTGTATTAAATTTA
94759513 T
1 T
94759514 TTTTTATTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (34 bp):
TAAAAAAATTAATTAAGTTTTTGTATTAAATTTA
Found at i:94759555 original size:30 final size:29
Alignment explanation
Indices: 94759451--94759566 Score: 90
Period size: 34 Copynumber: 3.8 Consensus size: 29
94759441 AACGTAAAAA
*
94759451 AATTAATTAAGTTTTTGTATTAAATTTATAAAAA
1 AATTAATTAAGTTTTTGTATTAAA--T-T--AAT
*
94759485 AATTAATTAAGTTTTTGTATTAAATTTAT
1 AATTAATTAAGTTTTTGTATTAAATTAAT
** * *
94759514 TTTTTATTAAGTTTTTGTCGTT-AATTAAAT
1 AATTAATTAAGTTTTTGT-ATTAAATT-AAT
* *
94759544 AATTAATTAAGTTTCTCTATTAA
1 AATTAATTAAGTTTTTGTATTAA
94759567 TAGTTTCTGT
Statistics
Matches: 66, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
29 22 0.33
30 18 0.27
31 1 0.02
32 1 0.02
34 24 0.36
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (29 bp):
AATTAATTAAGTTTTTGTATTAAATTAAT
Found at i:94760385 original size:18 final size:19
Alignment explanation
Indices: 94760344--94760399 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
94760334 TTTGAATATT
94760344 TTTTTATAATTTTATTTTA
1 TTTTTATAATTTTATTTTA
94760363 TTTTTATAATTTT-TTCTTA
1 TTTTTATAATTTTATT-TTA
94760382 -TTTTATATATTATTATTT
1 TTTTTATA-ATT-TTATTT
94760400 CAATATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
18 9 0.27
19 19 0.58
20 3 0.09
21 2 0.06
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTATAATTTTATTTTA
Found at i:94764566 original size:15 final size:15
Alignment explanation
Indices: 94764546--94764601 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
94764536 ATATATATTT
*
94764546 TTATTTTATTTTTAA
1 TTATATTATTTTTAA
*
94764561 TTATTTTAAATTTTTAA
1 TTATATT--ATTTTTAA
94764578 -TATAATTATTTTT-A
1 TTAT-ATTATTTTTAA
94764592 TTATATTATT
1 TTATATTATT
94764602 AATTCGTGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
14 7 0.19
15 16 0.44
16 3 0.08
17 10 0.28
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTATATTATTTTTAA
Found at i:94764691 original size:25 final size:24
Alignment explanation
Indices: 94764653--94764710 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
94764643 ATTTATTTTA
94764653 ATATTTATTTTTAT-GTTTTAAAT
1 ATATTTATTTTTATAGTTTTAAAT
*
94764676 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATAGTTTTAAAT
*
94764702 -TTTTTATTT
1 ATATTTATTT
94764711 AATGAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 6 0.20
24 8 0.27
25 8 0.27
26 8 0.27
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (24 bp):
ATATTTATTTTTATAGTTTTAAAT
Found at i:94769927 original size:16 final size:17
Alignment explanation
Indices: 94769895--94769931 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
94769885 TATTTTATTC
94769895 TTATTTTTTAAAGATTT
1 TTATTTTTTAAAGATTT
*
94769912 TTATTTTTTATA-ATTT
1 TTATTTTTTAAAGATTT
94769928 TTAT
1 TTAT
94769932 AATTAAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTATTTTTTAAAGATTT
Found at i:94770930 original size:28 final size:29
Alignment explanation
Indices: 94770872--94770948 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 29
94770862 TTTACCTCAG
*
94770872 GTTACATTTTAGTCACTTATGTTTAAAAT
1 GTTACATTTTAGTCACTTACGTTTAAAAT
* *
94770901 GTTAC-TTTTGAGTCGCTTACG-TTAACAT
1 GTTACATTTT-AGTCACTTACGTTTAAAAT
94770929 GTTGTAACATTTTAGTCACT
1 G-T-T-ACATTTTAGTCACT
94770949 GAGCTATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
28 11 0.28
29 15 0.38
30 1 0.03
31 8 0.21
32 4 0.10
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.45
Consensus pattern (29 bp):
GTTACATTTTAGTCACTTACGTTTAAAAT
Found at i:94774189 original size:45 final size:45
Alignment explanation
Indices: 94774138--94774227 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
94774128 AGAGGTGAGA
94774138 TGTATAGTATGGTTGAATTTTGGCACTAAGTGTGCCGATATAAAC
1 TGTATAGTATGGTTGAATTTTGGCACTAAGTGTGCCGATATAAAC
* * *
94774183 TGTATAGTGTGGTTGAATTTTGGCACTAAGTGTGCGGATGTAAAC
1 TGTATAGTATGGTTGAATTTTGGCACTAAGTGTGCCGATATAAAC
94774228 CTTTACGATT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.27, C:0.10, G:0.28, T:0.36
Consensus pattern (45 bp):
TGTATAGTATGGTTGAATTTTGGCACTAAGTGTGCCGATATAAAC
Found at i:94774287 original size:29 final size:29
Alignment explanation
Indices: 94774245--94774317 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
94774235 ATTTTGAGAT
* *
94774245 TGGCACTAAGTGTGCGAGTTTAAATCGTA
1 TGGCACTAAGTGTGCGAGGTTAAATAGTA
* *
94774274 TGGCACTAAGTGTGCGAGGTTGAATATTA
1 TGGCACTAAGTGTGCGAGGTTAAATAGTA
*
94774303 -AGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
94774318 GACTTACTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 14 0.36
29 25 0.64
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGGTTAAATAGTA
Found at i:94775735 original size:12 final size:12
Alignment explanation
Indices: 94775707--94775735 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
94775697 AATTGGCCCA
94775707 ACCAAAAATTCT
1 ACCAAAAATTCT
94775719 A-CAAAAATTCT
1 ACCAAAAATTCT
94775730 ACCAAA
1 ACCAAA
94775736 TAGATATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (12 bp):
ACCAAAAATTCT
Found at i:94778837 original size:5 final size:5
Alignment explanation
Indices: 94778827--94778880 Score: 76
Period size: 5 Copynumber: 11.0 Consensus size: 5
94778817 TGTTAAAATA
*
94778827 TATAT TATAT TATAT TATAT TGTAT TATAT TATA- TAT-T ATATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT -TATAT TATAT
94778876 TATAT
1 TATAT
94778881 AAATAAGTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
4 3 0.07
5 40 0.91
6 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:94778881 original size:7 final size:7
Alignment explanation
Indices: 94778837--94778875 Score: 53
Period size: 7 Copynumber: 5.4 Consensus size: 7
94778827 TATATTATAT
94778837 TATATTA
1 TATATTA
94778844 TAT-TGTA
1 TATAT-TA
94778851 TTATATTA
1 -TATATTA
94778859 TATATTA
1 TATATTA
94778866 TATATTA
1 TATATTA
94778873 TAT
1 TAT
94778876 TATATAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
6 1 0.03
7 22 0.76
8 5 0.17
9 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:94780168 original size:15 final size:15
Alignment explanation
Indices: 94780148--94780200 Score: 88
Period size: 15 Copynumber: 3.5 Consensus size: 15
94780138 CGATGAATTT
94780148 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
94780163 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
94780178 ATTGAATTTATATTG
1 ATTGAATTTATATTG
94780193 ATTGAATT
1 ATTGAATT
94780201 ATACAATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:94780601 original size:23 final size:23
Alignment explanation
Indices: 94780575--94780649 Score: 95
Period size: 21 Copynumber: 3.4 Consensus size: 23
94780565 AAGCACTTTA
94780575 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
94780598 TGTGTCGTA--TCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
* **
94780619 TGTGTCGT-TTT-AGGCACTTTA
1 TGTGTCGTATTTCAGGCACCTCG
94780640 TGTGTCGTAT
1 TGTGTCGTAT
94780650 ACTGATCAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
21 35 0.76
22 2 0.04
23 9 0.20
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.39
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:94780790 original size:18 final size:18
Alignment explanation
Indices: 94780767--94781044 Score: 152
Period size: 18 Copynumber: 15.1 Consensus size: 18
94780757 AAAGATAATA
*
94780767 AATAATTGATTATTACTG
1 AATAATTGATTGTTACTG
*
94780785 AATAATTGACTGTTACTG
1 AATAATTGATTGTTACTG
* *
94780803 GAT-ATTAGACTGTTACTG
1 AATAATT-GATTGTTACTG
* * * * *
94780821 AATAACTGAATATTATTA
1 AATAATTGATTGTTACTG
**
94780839 AATAATTGATCATTACTG
1 AATAATTGATTGTTACTG
* * *
94780857 AATAACTGATTGTCATTG
1 AATAATTGATTGTTACTG
* *
94780875 AATGAA-TGACTGTTACTA
1 AAT-AATTGATTGTTACTG
*
94780893 AATAACTTAATTGTTACTG
1 AATAA-TTGATTGTTACTG
94780912 AAT-ATCTGATT-TTACTG
1 AATAAT-TGATTGTTACTG
* *
94780929 AATAATTGACTGTTTCTGG
1 AATAATTGATTGTTACT-G
* *
94780948 ATAACCGATCAATTGATCGATACTG
1 ---A---AT-AATTGATTGTTACTG
* * *
94780973 AATAACTGGTTATTACTG
1 AATAATTGATTGTTACTG
*
94780991 AATATTTGATTGTTACTG
1 AATAATTGATTGTTACTG
* *
94781009 CATAATTGACTGTTACTG
1 AATAATTGATTGTTACTG
* *
94781027 AATAAATAATTGTT-CTG
1 AATAATTGATTGTTACTG
94781044 A
1 A
94781045 GAGTTAATGA
Statistics
Matches: 195, Mismatches: 49, Indels: 33
0.70 0.18 0.12
Matches are distributed among these distances:
17 23 0.12
18 138 0.71
19 19 0.10
22 2 0.01
25 3 0.02
26 10 0.05
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (18 bp):
AATAATTGATTGTTACTG
Found at i:94780886 original size:72 final size:72
Alignment explanation
Indices: 94780765--94780899 Score: 182
Period size: 72 Copynumber: 1.9 Consensus size: 72
94780755 ATAAAGATAA
* * * * * *
94780765 TAAATAATTGATTATTACTGAATAATTGACTGTTACTGGATATTAGACTGTTACTGAATAACTGA
1 TAAATAATTGATCATTACTGAATAACTGACTGTCACTGAATAATAGACTGTTACTAAATAACTGA
94780830 ATATTAT
66 ATATTAT
* *
94780837 TAAATAATTGATCATTACTGAATAACTGATTGTCATTGAATGAAT-GACTGTTACTAAATAACT
1 TAAATAATTGATCATTACTGAATAACTGACTGTCACTGAAT-AATAGACTGTTACTAAATAACT
94780900 TAATTGTTAC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
72 52 0.96
73 2 0.04
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (72 bp):
TAAATAATTGATCATTACTGAATAACTGACTGTCACTGAATAATAGACTGTTACTAAATAACTGA
ATATTAT
Found at i:94785454 original size:45 final size:45
Alignment explanation
Indices: 94785403--94785492 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
94785393 AGAGGTGAGA
94785403 TGTATAGTGTGGTTGAATTTCGGCACTAAGTGTGCGGATATAAAC
1 TGTATAGTGTGGTTGAATTTCGGCACTAAGTGTGCGGATATAAAC
94785448 TGTATAGTGTGGTTGAATTTCGGCACTAAGTGTGCGGATATAAAC
1 TGTATAGTGTGGTTGAATTTCGGCACTAAGTGTGCGGATATAAAC
94785493 ATTTACGATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (45 bp):
TGTATAGTGTGGTTGAATTTCGGCACTAAGTGTGCGGATATAAAC
Found at i:94785552 original size:29 final size:29
Alignment explanation
Indices: 94785510--94785582 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
94785500 ATTTTGAGAT
* *
94785510 TGGCACTAAGTGTGCGAGTTTAAATCGTA
1 TGGCACTAAGTGTGCGAGGTTAAATAGTA
* *
94785539 TGGCACTAAGTGTGCGAGGTTGAATATTA
1 TGGCACTAAGTGTGCGAGGTTAAATAGTA
*
94785568 -AGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
94785583 GACTTACTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 14 0.36
29 25 0.64
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGGTTAAATAGTA
Found at i:94787595 original size:45 final size:45
Alignment explanation
Indices: 94787527--94787634 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
94787517 GTCATCAAGT
* * *
94787527 TGTGGATGCACAACAAAAACGTCGTAGAT-GGAATCTGTCTATGGC
1 TGTGGATACACAACAAAAACGTCGCAGATAGG-ATCTATCTATGGC
* * * * *
94787572 TGTGGGTACACAACAAAACCGTCGCAGATATGATCTATGTATTGC
1 TGTGGATACACAACAAAAACGTCGCAGATAGGATCTATCTATGGC
94787617 TGTGGATACACAACAAAA
1 TGTGGATACACAACAAAA
94787635 TAATGTAGAT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 52 0.98
46 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (45 bp):
TGTGGATACACAACAAAAACGTCGCAGATAGGATCTATCTATGGC
Found at i:94789419 original size:21 final size:21
Alignment explanation
Indices: 94789393--94789436 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
94789383 TCTTAATATT
94789393 TTCTCTACACACAAAATTGAC
1 TTCTCTACACACAAAATTGAC
94789414 TTCTCTACACACAAAATTGAC
1 TTCTCTACACACAAAATTGAC
94789435 TT
1 TT
94789437 AACCCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.32
Consensus pattern (21 bp):
TTCTCTACACACAAAATTGAC
Found at i:94790055 original size:17 final size:17
Alignment explanation
Indices: 94790033--94790072 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
94790023 ATCTATTTTT
94790033 AATTTAAT-TTTTATCAA
1 AATTTAATATTTT-TCAA
*
94790050 ATTTTAATATTTTTCAA
1 AATTTAATATTTTTCAA
94790067 AATTTA
1 AATTTA
94790073 TATAAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTAATATTTTTCAA
Found at i:94790678 original size:53 final size:53
Alignment explanation
Indices: 94790617--94790721 Score: 183
Period size: 53 Copynumber: 2.0 Consensus size: 53
94790607 TTAAGTACCA
* * *
94790617 AAATGGGAAAAATGACAAAATCTAGGTACCAATTTAAGGATTAAGCATTTTTG
1 AAATGGGAAAAATGACAAAATCTAGATACCAATTCAAGAATTAAGCATTTTTG
94790670 AAATGGGAAAAATGACAAAATCTAGATACCAATTCAAGAATTAAGCATTTTT
1 AAATGGGAAAAATGACAAAATCTAGATACCAATTCAAGAATTAAGCATTTTT
94790722 TTTCAAAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.28
Consensus pattern (53 bp):
AAATGGGAAAAATGACAAAATCTAGATACCAATTCAAGAATTAAGCATTTTTG
Found at i:94791251 original size:19 final size:21
Alignment explanation
Indices: 94791203--94791254 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 21
94791193 AAGTTGTATA
94791203 TTTAATTTTCATACTTTAATTTC
1 TTTAATTTT-ATA-TTTAATTTC
*
94791226 ATTAATTTTAT-TTTAATTT-
1 TTTAATTTTATATTTAATTTC
94791245 TTTAATTTTA
1 TTTAATTTTA
94791255 AAATTTTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 9 0.33
20 8 0.30
22 2 0.07
23 8 0.30
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTAATTTTATATTTAATTTC
Found at i:94791983 original size:30 final size:30
Alignment explanation
Indices: 94791947--94792120 Score: 278
Period size: 30 Copynumber: 5.8 Consensus size: 30
94791937 ACTTTTCTCA
*
94791947 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
94791977 ACTAGCCACACCTTTT-CACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
94792006 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
94792036 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
94792066 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
94792096 ACTAGTCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
94792121 CTTGTACCTA
Statistics
Matches: 132, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
29 27 0.20
30 105 0.80
ACGTcount: A:0.25, C:0.48, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:94792086 original size:60 final size:60
Alignment explanation
Indices: 94791947--94792120 Score: 314
Period size: 60 Copynumber: 2.9 Consensus size: 60
94791937 ACTTTTCTCA
*
94791947 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTT-CACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
94792006 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
* *
94792066 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGTCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
94792121 CTTGTACCTA
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
59 45 0.41
60 66 0.59
ACGTcount: A:0.25, C:0.48, G:0.03, T:0.23
Consensus pattern (60 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:94792703 original size:27 final size:27
Alignment explanation
Indices: 94792673--94792821 Score: 87
Period size: 25 Copynumber: 5.6 Consensus size: 27
94792663 ATTTTAAATT
*
94792673 CTATATTACGTATATATATATATTATA
1 CTATATTATGTATATATATATATTATA
* * *
94792700 CTATTTTATGTATATATCT-T-TAATA
1 CTATATTATGTATATATATATATTATA
* * *
94792725 TTATATTATTTATATATATATATTTTTTA
1 CTATATTATGTATATATATATA--TTATA
* * * *
94792754 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTAT-GTATATATATATATTATA
* *
94792780 CTATATTATGTATGTAT-T-T-TTAACA
1 CTATATTATGTATATATATATATT-ATA
*
94792805 CTATATTATGTACATAT
1 CTATATTATGTATATAT
94792822 TTTTAATATT
Statistics
Matches: 95, Mismatches: 19, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
23 2 0.02
24 2 0.02
25 36 0.38
26 11 0.12
27 24 0.25
28 6 0.06
29 14 0.15
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (27 bp):
CTATATTATGTATATATATATATTATA
Found at i:94792704 original size:25 final size:25
Alignment explanation
Indices: 94792674--94792748 Score: 78
Period size: 27 Copynumber: 2.9 Consensus size: 25
94792664 TTTTAAATTC
*
94792674 TATATTACGTATATATATATATTAT
1 TATATTATGTATATATATATATTAT
* * * *
94792699 ACTATTTTATGTATATATCTTTAATAT
1 --TATATTATGTATATATATATATTAT
*
94792726 TATATTATTTATATATATATATT
1 TATATTATGTATATATATATATT
94792749 TTTTACATGT
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
25 18 0.47
27 20 0.53
ACGTcount: A:0.37, C:0.04, G:0.03, T:0.56
Consensus pattern (25 bp):
TATATTATGTATATATATATATTAT
Found at i:94792811 original size:25 final size:25
Alignment explanation
Indices: 94792779--94792827 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
94792769 ATATATCTTA
**
94792779 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
94792804 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
94792828 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:94793008 original size:16 final size:15
Alignment explanation
Indices: 94792984--94793031 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
94792974 TAATTATTAT
*
94792984 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
94793000 TATTTTAATATTTTA
1 TATTTTAATATTTTA
94793015 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
94793031 T
1 T
94793032 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:94793019 original size:7 final size:8
Alignment explanation
Indices: 94792984--94793035 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
94792974 TAATTATTAT
*
94792984 TATTCTAA
1 TATTTTAA
*
94792992 TATTTTGA
1 TATTTTAA
94793000 TATTTTAA
1 TATTTTAA
94793008 TATTTT-A
1 TATTTTAA
94793015 TATTTTATA
1 TATTTTA-A
*
94793024 TATTTTAT
1 TATTTTAA
94793032 TATT
1 TATT
94793036 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:94796675 original size:14 final size:15
Alignment explanation
Indices: 94796650--94796690 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
94796640 GGTGTTCAAA
94796650 ATATATACATAACAT
1 ATATATACATAACAT
*
94796665 A-ATATATATAA-AT
1 ATATATACATAACAT
94796678 ATATATACATAAC
1 ATATATACATAAC
94796691 GTAGTATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 3 0.14
14 18 0.82
15 1 0.05
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATATACATAACAT
Found at i:94799148 original size:54 final size:55
Alignment explanation
Indices: 94799048--94799153 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
94799038 GCCCCGAGGC
* *
94799048 TCAACTCACCTCTAGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * * *
94799102 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
94799154 CAGAACTTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:94799240 original size:14 final size:14
Alignment explanation
Indices: 94799221--94799255 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
94799211 GCTGATTTTT
* *
94799221 TTGAAAAGTAGGAA
1 TTGAAAAGCAGAAA
94799235 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
94799249 TTGAAAA
1 TTGAAAA
94799256 TAGCTCAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:94799297 original size:91 final size:88
Alignment explanation
Indices: 94799097--94799311 Score: 251
Period size: 91 Copynumber: 2.4 Consensus size: 88
94799087 TAGAAATTAA
* * * * *
94799097 AAGGTTCAACCCACCTCTCGCAATATGAGTTGA--TTCTTGAACAACATA--AATTGAAAACAGA
1 AAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAA-AA-GTAGGAATTGAAAACAGA
*
94799158 ACTTGAAAATACCTCAGCATGACCT
64 AATTGAAAATACCTCAGCATGACCT
*
94799183 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAGTAGGAATTGAAAAGCAGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAGTAGGAATTGAAAA-CAGAA
*
94799248 ATTGAAAATAGCTCAGCACGTGAGCC-
65 ATTGAAAATACCTCAGCA--TGA-CCT
* *
94799274 AAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT
1 AAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
94799312 GAAAAACAGA
Statistics
Matches: 110, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
86 31 0.28
87 2 0.02
88 16 0.15
89 21 0.19
91 38 0.35
92 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (88 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAGTAGGAATTGAAAACAGAAA
TTGAAAATACCTCAGCATGACCT
Found at i:94799566 original size:74 final size:70
Alignment explanation
Indices: 94799329--94799571 Score: 220
Period size: 70 Copynumber: 3.4 Consensus size: 70
94799319 AGAAAATAAA
* * * * *
94799329 AGGCTGAACTCACCTTTCGCAAGATGAG-TCAATTTT-CTAAACACAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGCT-GATTTTGC--AACATAAACTAAAAATACCTCAGC
* *
94799392 GTGCCCCG
63 GTGACCTG
* * * * **
94799400 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAACATAAACTGAAATTACCTCAATGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGCAACATAAACTAAAAATACCTCAGCGTG
* *
94799465 TCTTG
66 ACCTG
* *
94799470 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACATGAATTAAAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTG---CAACATAAACTAAAAATACCTCAG
94799535 CGTGACCTG
62 CGTGACCTG
** * *
94799544 AGGCTTGACTCATCTCTGGCAATATGAG
1 AGGCTCAACTCACCTCTCGCAATATGAG
94799572 TTGGTTTTAG
Statistics
Matches: 139, Mismatches: 27, Indels: 9
0.79 0.15 0.05
Matches are distributed among these distances:
70 55 0.40
71 35 0.25
72 1 0.01
74 48 0.35
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGCAACATAAACTAAAAATACCTCAGCGTG
ACCTG
Found at i:94800163 original size:74 final size:73
Alignment explanation
Indices: 94799994--94800278 Score: 235
Period size: 74 Copynumber: 3.9 Consensus size: 73
94799984 GGCGTGCCCC
* * * * * * *
94799994 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAGC-ATA-AATTGAAATTACTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAG-TGA--TTTTTGAAACAACAGAATTAAAAATACCTC
* * *
94800057 AAC-GTGTCTT
63 AGCGGTGACCT
*
94800067 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAG-TGATTTTTGAAACAACA-GAATTAAAAATACCTCA
94800132 GC-GTGACCT
64 GCGGTGACCT
** * * * *
94800141 GAGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTTGAAAC-ATA-AACTAAAAATATCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGT-GA-TTTTTGAAACAACAGAATTAAAAATACCTCA
94800204 GCGTGTGACCT
64 GCG-GTGACCT
** * *
94800215 GAGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTG-AA-AACATGAATTAAAGATACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATG-AGTGATTTTTGAAACAACA-GAATTAAAAATACCTCA
94800278 G
64 G
94800279 AGTACCCAAA
Statistics
Matches: 172, Mismatches: 29, Indels: 21
0.77 0.13 0.09
Matches are distributed among these distances:
71 9 0.05
72 21 0.12
73 38 0.22
74 92 0.53
75 12 0.07
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (73 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTGATTTTTGAAACAACAGAATTAAAAATACCTCAGC
GGTGACCT
Found at i:94813368 original size:47 final size:47
Alignment explanation
Indices: 94813259--94813369 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
94813249 CCGGGATAAG
*
94813259 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
94813306 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
94813353 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
94813370 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:94820620 original size:47 final size:47
Alignment explanation
Indices: 94820511--94820621 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
94820501 CCGGGATAAG
*
94820511 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
94820558 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
94820605 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
94820622 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:94831626 original size:71 final size:69
Alignment explanation
Indices: 94831528--94831702 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 69
94831518 TTTTCAAGGG
** *
94831528 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTAT
94831592 GTTTT
65 GTTTT
* * *
94831597 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTA
94831662 TGTTTT
64 TGTTTT
** * *
94831668 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
94831703 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 31 0.33
71 60 0.65
72 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTATG
TTTT
Found at i:94831962 original size:140 final size:140
Alignment explanation
Indices: 94831800--94832281 Score: 867
Period size: 140 Copynumber: 3.4 Consensus size: 140
94831790 TTAATTTCAA
94831800 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
94831865 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
94831930 TCAAAATCAG
131 TCAAAATCAG
94831940 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
94832005 TTTACATTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
94832070 TCAAAATCAG
131 TCAAAATCAG
*
94832080 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* * *
94832145 TTTATGTTGTTCAAGAATCAACTCATATTGCTAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
*
94832210 TCAAAATTAG
131 TCAAAATCAG
*
94832220 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGTGGTATTTTCAATTTCTGTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGTT
94832282 CGTAAAAAAA
Statistics
Matches: 330, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
139 2 0.01
140 306 0.93
142 22 0.07
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:94832138 original size:280 final size:277
Alignment explanation
Indices: 94831800--94832910 Score: 903
Period size: 280 Copynumber: 3.9 Consensus size: 277
94831790 TTAATTTCAA
*
94831800 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
*
94831865 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTT-AATTTCTACTTT
66 TTT-CGTTGTTCAAAAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAATTTCT-CTTT
*
94831929 TTC-AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC-GCTGAGGTATTTTCA
129 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACAGCTGAGGTATTTTCA
* * * *
94831991 ATTTCTGTT-TTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTT
193 ATTTCTGTTCTT-AA--TA-ATTG-TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTT
94832055 TTAATTTCTACTTTTTCAAAATCAG
253 TTAATTTCTACTTTTTCAAAATCAG
94832080 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
* * * *
94832145 TTTATGTTGTTCAAGAATCAACTCATATTGCTAGAGGTGGGTTGAACCTTTT-AATTTCTACTTT
66 TTT-CGTTGTTCAAAAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAATTTCT-CTTT
* * * *
94832209 TTC-AAAATTAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGTGGTATTTTCA
129 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA-GCTGAGGTATTTTCA
*
94832273 ATTTCTGTTCGTAA-AA----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
193 ATTTCTGTTCTTAATAATTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTT--G-----A-AC
* * * * * *
94832333 ACGTTGAGGTGGTTTTAATTTATGTTCATAAAAATTAG
250 -CTTTTA-AT--TTCT-ACTT-T-TTC---AAAATCAG
* * *
94832371 CTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACACTGAGGTCTTTTCAATTTCTGTTCT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-T--CACACTGAGGTATTTTCAATTTCTGTT-T
** * *
94832435 TCAATTTCTGTTCGTAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
62 TCAATTTC-GTT-GT-----TCAAAAATCAACTCATATTGCGAGA----AG-TG-G-GT--TGA-
* *
94832500 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGA
110 AC-C--------TTTTAAATTTCTCTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * * *
94832565 GCCTCAGG-ACAC-GATGAGGTAATTTCAATTTCTG-------T--TTGTCAAGAATCAACTCAT
165 GCCTC-GGCTCACAGCTGAGGTATTTTCAATTTCTGTTCTTAATAATTGTAAAAAATCAACTCAT
*
94832619 ATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
229 ATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
*
94832668 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTCTT-AATTT-TG------
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATT-TTCAATTTCTGTTTTCA
* * * *
94832725 --TT-G-T-TTCAAAAATCAACTCATGTTGCGAGAAGTGAGTT-AAGCCTTTTCAATTTCTGTTT
65 ATTTCGTTGTTCAAAAATCAACTCATATTGCGAGAAGTGGGTTGAA-CCTTTTAAATTTCTCTTT
* * *
94832784 GTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCA
129 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA-GCTGAGGTATTTTCA
*
94832849 ATTTCTGTTCTTCAATTTATGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
193 ATTTCTGTTCTT-AA--TA-ATT-GT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
94832911 GCCTCGGGAC
Statistics
Matches: 682, Mismatches: 66, Indels: 173
0.74 0.07 0.19
Matches are distributed among these distances:
254 2 0.00
255 39 0.06
256 17 0.02
257 19 0.03
264 2 0.00
265 2 0.00
267 1 0.00
268 1 0.00
270 4 0.01
271 4 0.01
273 59 0.09
275 23 0.03
278 1 0.00
279 3 0.00
280 170 0.25
281 2 0.00
282 30 0.04
283 3 0.00
285 5 0.01
286 3 0.00
287 1 0.00
288 3 0.00
290 2 0.00
291 35 0.05
293 26 0.04
294 13 0.02
295 19 0.03
296 2 0.00
297 35 0.05
298 2 0.00
300 24 0.04
301 1 0.00
302 3 0.00
303 3 0.00
304 1 0.00
305 3 0.00
306 5 0.01
307 3 0.00
308 1 0.00
309 2 0.00
310 2 0.00
311 1 0.00
313 1 0.00
315 29 0.04
319 29 0.04
320 7 0.01
321 37 0.05
322 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (277 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
TTTCGTTGTTCAAAAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAATTTCTCTTTTT
CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAGCTGAGGTATTTTCAATT
TCTGTTCTTAATAATTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTC
TACTTTTTCAAAATCAG
Found at i:94832143 original size:13 final size:13
Alignment explanation
Indices: 94832125--94832158 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
94832115 CACTGAGGTA
*
94832125 TTTTCAATTTCTG
1 TTTTCAATTTATG
94832138 TTTTCAATTTATG
1 TTTTCAATTTATG
94832151 TTGTTCAA
1 TT-TTCAA
94832159 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:94832439 original size:14 final size:14
Alignment explanation
Indices: 94832420--94832447 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
94832410 CTGAGGTCTT
94832420 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
94832434 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
94832448 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:94832565 original size:75 final size:74
Alignment explanation
Indices: 94832456--94832637 Score: 285
Period size: 75 Copynumber: 2.5 Consensus size: 74
94832446 TCGTAAAAAA
* *
94832456 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTA-ATTTAAATT
*
94832521 TCTGTTTTTC
65 TCTGTTTGTC
* *
94832531 AAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTAAATTT
94832596 CTGTTTGTC
66 CTGTTTGTC
* *
94832605 -AAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
94832638 ACCTTTTAAT
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
73 30 0.30
74 16 0.16
75 53 0.54
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.30
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTAAATTT
CTGTTTGTC
Found at i:94832740 original size:127 final size:128
Alignment explanation
Indices: 94832512--94832857 Score: 416
Period size: 127 Copynumber: 2.7 Consensus size: 128
94832502 GCTGAGGTAT
* * * * *
94832512 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTCTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
* * * *
94832577 GATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CC
65 GCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTT-AAGCC
* *
94832641 TTTT-AATTTCTACTTTTTC-AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
1 TTTTCAATTTCT-CTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
* * *
94832704 GCTGAGGT-ATTCTTAATTT-TGTTGTTTCAAAAATCAACTCATGTTGCGAGAAGTGAGTTAAGC
65 GCTGAGGTAATT-TCAATTTCTGTT-TGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGC
94832767 C
128 C
* *
94832768 TTTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCAC
1 TTTTCAATTTCTCTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC
**
94832832 ATGCTGAGGTCTTTTCAATTTCTGTT
65 --GCTGAGGTAATTTCAATTTCTGTT
94832858 CTTCAATTTA
Statistics
Matches: 189, Mismatches: 17, Indels: 20
0.84 0.08 0.09
Matches are distributed among these distances:
126 9 0.05
127 97 0.51
128 53 0.28
129 10 0.05
130 14 0.07
131 6 0.03
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (128 bp):
TTTTCAATTTCTCTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACG
CTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCC
Found at i:94832980 original size:73 final size:74
Alignment explanation
Indices: 94832878--94833021 Score: 227
Period size: 73 Copynumber: 1.9 Consensus size: 74
94832868 TGTTCGTAAA
*
94832878 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GACACGCTGAGGTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGTAATTTCAATTT
94832942 CTGTTTGTC
66 CTGTTTGTC
* * **
94832951 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACACGCTGAGGTAATTTCAATT
94833016 TCTGTT
65 TCTGTT
94833022 CTTCAATTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 39 0.61
75 25 0.39
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGTAATTTCAATTT
CTGTTTGTC
Found at i:94833040 original size:164 final size:165
Alignment explanation
Indices: 94832769--94833185 Score: 687
Period size: 164 Copynumber: 2.5 Consensus size: 165
94832759 AGTTAAGCCT
94832769 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
*
94832834 GCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTATGTTCGTAAAAAAAATCAACTCATATTGCGA
66 GCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTATATTCGTAAAAAAAATCAACTCATATTGCGA
* *
94832899 GAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-A
131 GAGGTGAGTTGAGCCTCAGGACACACTGAGGTATA
94832933 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
*
94832998 GCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTATTCGTAAAAAAAATCAACTCATATTGCGA
66 GCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTATATTCGTAAAAAAAATCAACTCATATTGCGA
*
94833063 GAGGTGAGTTGAGCCTCAGGACACACTGAGGTATT
131 GAGGTGAGTTGAGCCTCAGGACACACTGAGGTATA
* * * * *
94833098 TTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG--GACA
1 TTTCAATTTCTGTTTGTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
* **
94833161 CGCTGAGGTAATTTCAATTTCTGTT
65 TGCTGAGGTCTTTTCAATTTCTGTT
94833186 TGTCAAAAAT
Statistics
Matches: 238, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
164 184 0.77
165 16 0.07
166 38 0.16
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (165 bp):
TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
GCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTATATTCGTAAAAAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCCTCAGGACACACTGAGGTATA
Found at i:94833150 original size:75 final size:73
Alignment explanation
Indices: 94833041--94833266 Score: 292
Period size: 75 Copynumber: 3.0 Consensus size: 73
94833031 CTATTCGTAA
94833041 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACACTGAGGTATTTTT-AATT
94833106 TCTGTTTTTC
64 TCTGTTTTTC
* * * *
94833116 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACACTGAGGTATTTTTAATTT
*
94833181 CTGTTTGTC
65 CTGTTTTTC
* * * * *
94833190 -AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTAAGGTCTTTTTAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACACA--CTGAGGTATTTTTAAT
*
94833254 TTCTGCTTTTC
63 TTCTGTTTTTC
94833265 AA
1 AA
94833267 TTTCTGTTTT
Statistics
Matches: 130, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
72 2 0.02
73 38 0.29
74 13 0.10
75 76 0.58
76 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACACTGAGGTATTTTTAATTTC
TGTTTTTC
Found at i:94833268 original size:14 final size:15
Alignment explanation
Indices: 94833243--94833284 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
94833233 ACATGCTAAG
*
94833243 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
94833258 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
94833272 GTTTTTTCAATTT
1 GTCTTTTCAATTT
94833285 ATATTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:94833280 original size:15 final size:14
Alignment explanation
Indices: 94833246--94833295 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
94833236 TGCTAAGGTC
94833246 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
94833259 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
94833273 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
94833288 TTTTTCAA
1 TTTTTCAA
94833296 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:94834091 original size:29 final size:30
Alignment explanation
Indices: 94834043--94834156 Score: 176
Period size: 30 Copynumber: 3.8 Consensus size: 30
94834033 ACTTTTCTCA
*
94834043 ACTAACCACTCATTTTCCACCACCAACTCC
1 ACTAGCCACTCATTTTCCACCACCAACTCC
94834073 ACTAGCCACTC-TTTTCCACCACCAACTCC
1 ACTAGCCACTCATTTTCCACCACCAACTCC
*
94834102 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCATTTTCCACCACCAACTCC
* * *
94834132 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCATTTTCCACCACCA
94834157 CTTGTACCTA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
29 29 0.37
30 50 0.63
ACGTcount: A:0.26, C:0.48, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACTCATTTTCCACCACCAACTCC
Found at i:94834118 original size:59 final size:60
Alignment explanation
Indices: 94834043--94834156 Score: 185
Period size: 59 Copynumber: 1.9 Consensus size: 60
94834033 ACTTTTCTCA
* *
94834043 ACTAACCACTCATTTTCCACCACCAACTCCACTAGCCAC-TCTTTTCCACCACCAACTCC
1 ACTAACCACTCATTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
* *
94834102 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAACCACTCATTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
94834157 CTTGTACCTA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
59 37 0.74
60 13 0.26
ACGTcount: A:0.26, C:0.48, G:0.03, T:0.23
Consensus pattern (60 bp):
ACTAACCACTCATTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:94834705 original size:2 final size:2
Alignment explanation
Indices: 94834698--94834774 Score: 74
Period size: 2 Copynumber: 40.5 Consensus size: 2
94834688 CTATATTACG
* * * *
94834698 TA TA TA TA TA TA TA T- TA TA CTA TT TA TG TA TA TA TC TT TA -A
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
94834739 TA T- TA TA T- TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
94834775 TTTACATGTT
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
1 5 0.08
2 55 0.89
3 2 0.03
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.55
Consensus pattern (2 bp):
TA
Found at i:94834835 original size:25 final size:25
Alignment explanation
Indices: 94834804--94834852 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
94834794 ATATATCTTA
**
94834804 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
94834829 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
94834853 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:94835032 original size:16 final size:15
Alignment explanation
Indices: 94835008--94835055 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
94834998 TAATTATTAT
*
94835008 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
94835024 TATTTTAATATTTTA
1 TATTTTAATATTTTA
94835039 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
94835055 T
1 T
94835056 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:94835043 original size:7 final size:8
Alignment explanation
Indices: 94835008--94835059 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
94834998 TAATTATTAT
*
94835008 TATTCTAA
1 TATTTTAA
*
94835016 TATTTTGA
1 TATTTTAA
94835024 TATTTTAA
1 TATTTTAA
94835032 TATTTT-A
1 TATTTTAA
94835039 TATTTTATA
1 TATTTTA-A
*
94835048 TATTTTAT
1 TATTTTAA
94835056 TATT
1 TATT
94835060 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:94837560 original size:94 final size:94
Alignment explanation
Indices: 94837421--94837661 Score: 333
Period size: 95 Copynumber: 2.5 Consensus size: 94
94837411 CAGTAGCGAC
*
94837421 AGTGGTGAAGAATCTTGATAATTAATTATTCATCATAAAAATAATAAAAAATAAAAACTTG-AGT
1 AGTGGTGAAG-A-CTTGATAATTAATTATTCATCATAAAAATAATAAAAAATAAAAACGTGAAG-
94837485 AACTCATCAACAAAACCTATCCC-CCTAGCAAA
63 AACTCATCAACAAAACCTATCCCACC-AGCAAA
* *
94837517 AGTGGTGAAGACTTGATAATTAATTATTCATCATAAAAATAATAAAAAAATAACAACGTGAAGGA
1 AGTGGTGAAGACTTGATAATTAATTATTCATCATAAAAATAAT-AAAAAATAAAAACGTGAAGAA
* *
94837582 TTCATCAACAATACCTATCCCACCAGCAAA
65 CTCATCAACAAAACCTATCCCACCAGCAAA
* * *
94837612 AGTGGTGAAGACTTTTCATACTTAATTATCCATCATAAAAATAATAAAAA
1 AGTGGTGAAGAC--TTGATAATTAATTATTCATCATAAAAATAATAAAAA
94837662 GGTGACAGCG
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
94 32 0.24
95 53 0.40
96 19 0.14
97 28 0.21
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27
Consensus pattern (94 bp):
AGTGGTGAAGACTTGATAATTAATTATTCATCATAAAAATAATAAAAAATAAAAACGTGAAGAAC
TCATCAACAAAACCTATCCCACCAGCAAA
Found at i:94839472 original size:20 final size:21
Alignment explanation
Indices: 94839435--94839490 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
94839425 GGAATAAAGA
**
94839435 AAAAAATAATAGGTAAAAACT
1 AAAAAATAATAGAAAAAAACT
*
94839456 AAAAAAT-ATAGAAAAAAACC
1 AAAAAATAATAGAAAAAAACT
*
94839476 AACAGAATAATAGAA
1 AA-AAAATAATAGAA
94839491 CCTAGAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 12 0.41
21 11 0.38
22 6 0.21
ACGTcount: A:0.70, C:0.07, G:0.09, T:0.14
Consensus pattern (21 bp):
AAAAAATAATAGAAAAAAACT
Found at i:94839542 original size:3 final size:3
Alignment explanation
Indices: 94839534--94839607 Score: 94
Period size: 3 Copynumber: 24.7 Consensus size: 3
94839524 AAATAGTCTA
*
94839534 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
94839582 GAT GAT GAT GAT AAT GAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
94839608 GTAGTCTAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:94839937 original size:3 final size:3
Alignment explanation
Indices: 94839929--94840053 Score: 103
Period size: 3 Copynumber: 41.7 Consensus size: 3
94839919 ATGGTTTAAA
* * *
94839929 AAT AAT AAT AAT TAT AAAT AAT AAT AAT AGT AGT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
94839975 AAAT AAT AGT ACT AAT AGT AAT AAT AAT GAT AAT AAT AAT AAT -AT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
94840020 AA- AAG AAT AA- AAA AAT AAT GAT ATT AAT ACAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA
94840054 ATATAAATAG
Statistics
Matches: 99, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
2 6 0.06
3 85 0.86
4 8 0.08
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:94839965 original size:25 final size:24
Alignment explanation
Indices: 94839937--94840002 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 24
94839927 AAAATAATAA
*
94839937 TAATTATAAATAATAATAATAGTAG
1 TAATTAT-AATAATAATAATAGTAC
*
94839962 TAATAATAATAATAAATAATAGTAC
1 TAATTATAATAAT-AATAATAGTAC
94839987 TAA-TAGTAATAATAAT
1 TAATTA-TAATAATAAT
94840003 GATAATAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
24 10 0.28
25 26 0.72
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.35
Consensus pattern (24 bp):
TAATTATAATAATAATAATAGTAC
Found at i:94840277 original size:15 final size:15
Alignment explanation
Indices: 94840247--94840309 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 15
94840237 TAAATAGAAA
94840247 TAGAAATATAATAATAG
1 TAGAAATA-AA-AATAG
94840264 TAGAAATAAAAATAG
1 TAGAAATAAAAATAG
*
94840279 -ATAAATAAAAATTAG
1 TAGAAATAAAAA-TAG
* *
94840294 -ATAAATAATAATAG
1 TAGAAATAAAAATAG
94840308 TA
1 TA
94840310 TTAGAAAAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
14 13 0.31
15 19 0.45
16 2 0.05
17 8 0.19
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (15 bp):
TAGAAATAAAAATAG
Found at i:94840299 original size:29 final size:29
Alignment explanation
Indices: 94840235--94840349 Score: 81
Period size: 29 Copynumber: 4.0 Consensus size: 29
94840225 AATATTAGTA
* *
94840235 TATAAATAGAAATAGAAATATAATAATAG
1 TATAAATAAAAATAGAAATATAAAAATAG
*
94840264 TAGAAATAAAAATAGATAA-ATAAAAATTAG
1 TATAAATAAAAATAGA-AATATAAAAA-TAG
* * * * * *
94840294 -ATAAATAATAATAGTATTAGAAAAACAA
1 TATAAATAAAAATAGAAATATAAAAATAG
* * * *
94840322 AATAAATATAAATAGAAACATAATAATA
1 TATAAATAAAAATAGAAATATAAAAATA
94840350 ATAGCAATAA
Statistics
Matches: 64, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
28 2 0.03
29 57 0.89
30 5 0.08
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (29 bp):
TATAAATAAAAATAGAAATATAAAAATAG
Found at i:94840358 original size:23 final size:23
Alignment explanation
Indices: 94840297--94840358 Score: 54
Period size: 23 Copynumber: 2.7 Consensus size: 23
94840287 AAATTAGATA
* *
94840297 AATAATAATAGTATTAGAAAAAC
1 AATAATAATAGAAATAGAAAAAC
* * *
94840320 AA-AATAAATATAAATAGAAACAT
1 AATAAT-AATAGAAATAGAAAAAC
*
94840343 AATAATAATAGCAATA
1 AATAATAATAGAAATA
94840359 ATATATTACA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
22 3 0.10
23 24 0.80
24 3 0.10
ACGTcount: A:0.65, C:0.05, G:0.06, T:0.24
Consensus pattern (23 bp):
AATAATAATAGAAATAGAAAAAC
Found at i:94840894 original size:11 final size:11
Alignment explanation
Indices: 94840862--94840910 Score: 57
Period size: 10 Copynumber: 4.5 Consensus size: 11
94840852 TAACTAATTT
94840862 AATAAATT-AA
1 AATAAATTAAA
*
94840872 ATTAAATTAAA
1 AATAAATTAAA
94840883 AATAAA-TAAA
1 AATAAATTAAA
*
94840893 AACAAAATTAAA
1 AA-TAAATTAAA
94840905 AATAAA
1 AATAAA
94840911 ATAATATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
10 13 0.41
11 13 0.41
12 6 0.19
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (11 bp):
AATAAATTAAA
Found at i:94842198 original size:14 final size:15
Alignment explanation
Indices: 94842168--94842200 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
94842158 TAATGAAATG
*
94842168 TTAAAACTGAGAATA
1 TTAAAACTGACAATA
94842183 TTAAAAC-GACAATA
1 TTAAAACTGACAATA
94842197 TTAA
1 TTAA
94842201 TATTTACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.27
Consensus pattern (15 bp):
TTAAAACTGACAATA
Found at i:94843721 original size:16 final size:16
Alignment explanation
Indices: 94843693--94843734 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
94843683 TTTTGGGTAG
*
94843693 GTTTTTCTTTTTCTTT
1 GTTTTTTTTTTTCTTT
94843709 -TTCTTTTTTTTTCTTT
1 GTT-TTTTTTTTTCTTT
94843725 GTTTTTTTTT
1 GTTTTTTTTT
94843735 GGGTTAGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 2 0.09
16 19 0.83
17 2 0.09
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.86
Consensus pattern (16 bp):
GTTTTTTTTTTTCTTT
Found at i:94843729 original size:12 final size:11
Alignment explanation
Indices: 94843694--94843732 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
94843684 TTTGGGTAGG
94843694 TTTTTCTTTTT
1 TTTTTCTTTTT
94843705 CTTTTTC-TTTT
1 -TTTTTCTTTTT
94843716 TTTTTCTTTGTT
1 TTTTTCTTT-TT
94843728 TTTTT
1 TTTTT
94843733 TTGGGTTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 6 0.24
11 6 0.24
12 13 0.52
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:94844496 original size:91 final size:90
Alignment explanation
Indices: 94844372--94844543 Score: 245
Period size: 91 Copynumber: 1.9 Consensus size: 90
94844362 TCACTAAAAA
* * * * *
94844372 CAGACATTAAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACTTCTCGC
1 CAGAAATTAAAAACAGAAATTGAAAATACCTCAGCACGTGAACCAAGGCTCAACTCACCTCTCGC
*
94844437 AATATGAGTTGATTTTTTTGAAAGG
66 AATATGAGCTGATTTTTTTGAAAGG
* * *
94844462 CAGAAATTGAAAAACGGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCG
1 CAGAAATT-AAAAACAGAAATTGAAAATACCTCAGCACGTGAACCAAGGCTCAACTCACCTCTCG
*
94844527 CAATATTAGCTGATTTT
65 CAATATGAGCTGATTTT
94844544 GAAAAAGTAG
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
90 7 0.10
91 64 0.90
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (90 bp):
CAGAAATTAAAAACAGAAATTGAAAATACCTCAGCACGTGAACCAAGGCTCAACTCACCTCTCGC
AATATGAGCTGATTTTTTTGAAAGG
Found at i:94844612 original size:54 final size:55
Alignment explanation
Indices: 94844512--94844617 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
94844502 GAACCGAGGC
* * *
94844512 TCAACTCACCTCTCGCAATATTAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
94844566 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
94844618 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:94844624 original size:13 final size:13
Alignment explanation
Indices: 94844597--94844630 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
94844587 GAGTTGATTC
*
94844597 TTGAACAACATAAA
1 TTGAA-AACAGAAA
94844611 TTGAAAACAGAAA
1 TTGAAAACAGAAA
94844624 TTGAAAA
1 TTGAAAA
94844631 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:94844678 original size:140 final size:140
Alignment explanation
Indices: 94844416--94845095 Score: 1159
Period size: 140 Copynumber: 4.8 Consensus size: 140
94844406 CGCGTGAGCC
* * * * *
94844416 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAA-AGGCAG-AAATTGAAAAACGG
1 AAGGTTCAACCCACTTCTCGCAATATGAGTTGA--TTCTTGAACA-AC-GTAAATTG-AAAACAG
*
94844479 AAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATTAGCTGATTT
61 AAATTGAAAATACCTCAG--TGTG-ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
94844543 TGAAAAAGTAGAAATTAA
123 TGAAAAAGTAGAAATTAA
* *
94844561 AAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTGAAAACAGAAATT
1 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATT
*
94844626 GAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAG
66 GAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAG
94844691 TAGAAATTAA
131 TAGAAATTAA
*
94844701 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAATAGAAATT
1 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATT
*
94844766 GAAAATACCTCAGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAG
66 GAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAG
94844831 TAGAAATTAA
131 TAGAAATTAA
94844841 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATT
1 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATT
*
94844906 GAAAATACCTCAGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAG
66 GAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAG
94844971 TAGAAATTAA
131 TAGAAATTAA
94844981 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATT
1 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATT
94845046 GAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
66 GAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
94845096 TTGAAATTAA
Statistics
Matches: 516, Mismatches: 16, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
139 3 0.01
140 444 0.86
142 24 0.05
143 14 0.03
144 1 0.00
145 30 0.06
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (140 bp):
AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATT
GAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAG
TAGAAATTAA
Found at i:94844752 original size:54 final size:54
Alignment explanation
Indices: 94844652--94844757 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
94844642 GACCTGAGGC
*
94844652 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
94844706 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
94844758 TAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:94844766 original size:13 final size:13
Alignment explanation
Indices: 94844748--94844772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94844738 TGAACAACGT
94844748 AAATTGAAAATAG
1 AAATTGAAAATAG
94844761 AAATTGAAAATA
1 AAATTGAAAATA
94844773 CCTCAGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:94845015 original size:280 final size:279
Alignment explanation
Indices: 94844416--94845252 Score: 1191
Period size: 280 Copynumber: 2.9 Consensus size: 279
94844406 CGCGTGAGCC
* * * *
94844416 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAA-AGGCAG-AAATTGAAAAACGG
1 AAGGTTCAACCCACTTCTCGCAATATGAGTTGA--TTCTTGAACA-AC-GTAAATTGAAAAA--G
*
94844479 AAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATTAGCTGATTT
60 AAATTGAAAATACCTCAG--TGTG-ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
* *
94844543 TGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACAT
122 TGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT
94844608 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
187 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
94844673 GAGCTGATTTTGAAAAAGTAGAAATTAA
252 GAGCTGATTTTGAAAAAGTAGAAATTAA
94844701 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAATAGAAATT
1 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAA-AGAAATT
*
94844766 GAAAATACCTCAGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAG
65 GAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAG
94844831 TAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAA
130 TAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAA
* *
94844896 AACAGAAATTGAAAATACCTCAGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGCTGAT
195 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
94844961 TTTGAAAAAGTAGAAATTAA
260 TTTGAAAAAGTAGAAATTAA
94844981 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATT
1 AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAA-AGAAATT
* **
94845046 GAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACA
65 GAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAA-A
* * * * *
94845110 -CAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTTACCTCTAGCAATATGAGTTGATT
129 GTAGAAATT---AA-A----AG-GT---TC-A-AC-CCACTT--CTC--GCAATATGAGTTGATT
94845174 C-TGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
175 CTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
94845238 CTCTCGCAATATGAG
240 CTCTCGCAATATGAG
94845253 TTGAAATTAA
Statistics
Matches: 506, Mismatches: 22, Indels: 36
0.90 0.04 0.06
Matches are distributed among these distances:
279 13 0.03
280 311 0.61
282 22 0.04
283 19 0.04
284 2 0.00
285 31 0.06
287 2 0.00
288 2 0.00
291 1 0.00
292 1 0.00
293 1 0.00
294 5 0.01
296 3 0.01
297 76 0.15
298 17 0.03
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (279 bp):
AAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAAAGAAATTG
AAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGT
AGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAA
ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
TTGAAAAAGTAGAAATTAA
Found at i:94845194 original size:72 final size:72
Alignment explanation
Indices: 94845028--94845171 Score: 218
Period size: 72 Copynumber: 2.0 Consensus size: 72
94845018 TGAACAACGT
* * * * *
94845028 AAATTGAAA-ACAGAAATTGAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
94845092 TGAGTTG
66 TGAGTTG
* *
94845099 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTTACCTCTAGCAATA
1 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
94845164 TGAGTTG
66 TGAGTTG
94845171 A
1 A
94845172 TTCTGAACAA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
71 8 0.12
72 57 0.88
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (72 bp):
AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
TGAGTTG
Found at i:94845256 original size:85 final size:86
Alignment explanation
Indices: 94845099--94845256 Score: 255
Period size: 85 Copynumber: 1.8 Consensus size: 86
94845089 ATATGAGTTG
* *
94845099 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTTACCTCTAGCAATA
1 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
94845164 TGAGTTGATTCTGAACAACGT
66 TGAGTTGATTCTGAACAACGT
* * * *
94845185 AAATTGAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
94845249 TGAGTTGA
66 TGAGTTGA
94845257 AATTAAAACA
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
85 58 0.88
86 8 0.12
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (86 bp):
AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
TGAGTTGATTCTGAACAACGT
Found at i:94845274 original size:85 final size:85
Alignment explanation
Indices: 94845099--94845279 Score: 231
Period size: 85 Copynumber: 2.1 Consensus size: 85
94845089 ATATGAGTTG
* *
94845099 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTTACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
** **
94845164 TGAGTTGATTCTGAACAACGT
65 TGAGTTGATTCAAAACAACAA
* * * *
94845185 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
94845250 GAGTTGAAATT-AAAAC-ACAA
66 GAGTTG--ATTCAAAACAACAA
94845270 AAATTAAAAA
1 AAATTAAAAA
94845280 TACCTCAGCG
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
85 68 0.83
86 11 0.13
87 3 0.04
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.22
Consensus pattern (85 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTGATTCAAAACAACAA
Found at i:94845342 original size:72 final size:71
Alignment explanation
Indices: 94845185--94845350 Score: 233
Period size: 72 Copynumber: 2.3 Consensus size: 71
94845175 TGAACAACGT
* * * * *
94845185 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
94845250 GAGTTG
66 GAGTTG
* *
94845256 AAATTAAAACACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
94845321 TGAGTTG
65 TGAGTTG
**
94845328 ATTTTGAAAAACAAAAATTAAAA
1 AAATT-AAAAACAAAAATTAAAA
94845351 GGCTTAACTC
Statistics
Matches: 84, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
71 8 0.10
72 72 0.86
73 4 0.05
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.23
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:94845346 original size:157 final size:157
Alignment explanation
Indices: 94844986--94845335 Score: 619
Period size: 157 Copynumber: 2.2 Consensus size: 157
94844976 ATTAAAAGGT
* * *
94844986 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
1 TCAACTCACCTCTAGCAATATGAGTTGATT-TTGAACAACGTAAATTGAAAACAGAAATTGAAAA
*
94845051 TACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
65 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
*
94845116 TTGAAAATACCTCAGCGTGCCCCGAGGC
130 TTAAAAATACCTCAGCGTGCCCCGAGGC
* *
94845144 TCAACTTACCTCTAGCAATATGAGTTGATTCTGAACAACGTAAATTGAAAACAGAAATTGAAAAT
1 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAAT
94845209 ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAAT
66 ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAAT
94845274 TAAAAATACCTCAGCGTGCCCCGAGGC
131 TAAAAATACCTCAGCGTGCCCCGAGGC
*
94845301 TCAACTCATCTCTAGCAATATGAGTTGATTTTGAA
1 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAA
94845336 AAACAAAAAT
Statistics
Matches: 182, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
157 156 0.86
158 26 0.14
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.25
Consensus pattern (157 bp):
TCAACTCACCTCTAGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAAT
ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAAT
TAAAAATACCTCAGCGTGCCCCGAGGC
Found at i:94845493 original size:71 final size:71
Alignment explanation
Indices: 94845350--94845613 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
94845340 AAAAATTAAA
* * * * *
94845350 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
94845413 GCCCCG
66 GCCCCG
* *
94845419 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
94845484 GTCTTG
66 GCCCCG
* * *
94845490 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
94845553 TGCCCCG
65 TGCCCCG
*
94845560 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
94845614 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Done.