Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 323 of 335
Found at i:94845571 original size:70 final size:69
Alignment explanation
Indices: 94845350--94845613 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
94845340 AAAAATTAAA
* ** * * *
94845350 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
94845415 CCCG
66 CCCG
* * *
94845419 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
94845484 GTCTTG
64 GCCCCG
* *
94845490 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
94845555 CCCCG
65 CCCCG
*
94845560 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
94845614 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:94845780 original size:257 final size:258
Alignment explanation
Indices: 94845188--94845780 Score: 1019
Period size: 257 Copynumber: 2.3 Consensus size: 258
94845178 ACAACGTAAA
* * * * *
94845188 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACA-AAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
*
94845253 TTGAAATTAAAACACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATCTCTAGCA
65 TTG--ATTAAAACACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
94845318 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
128 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
94845383 TTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
193 TT---A-ATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
94845448 TGATT
254 TGATT
94845453 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAAC-AAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
*
94845518 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
65 TTGATTAAAACACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
94845583 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
130 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
94845648 -A-AAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
195 AATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
94845710 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAA-AATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
94845775 TTGATT
65 TTGATT
94845781 TTCCTTGAAA
Statistics
Matches: 318, Mismatches: 8, Indels: 12
0.94 0.02 0.04
Matches are distributed among these distances:
256 2 0.01
257 128 0.40
258 1 0.00
263 125 0.39
265 61 0.19
266 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (258 bp):
TTGAAAACAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGT
TGATTAAAACACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
TGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTA
ATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:94848486 original size:195 final size:195
Alignment explanation
Indices: 94848154--94848543 Score: 753
Period size: 195 Copynumber: 2.0 Consensus size: 195
94848144 TTAATCAATT
*
94848154 TTAAGTCCCTCACTTCTCATTCTCCATGGATTTGGTAAATCACTAGGGCTGAATCCCCGTACACC
1 TTAAGTCCCTCACTTCTCATTCTCCACGGATTTGGTAAATCACTAGGGCTGAATCCCCGTACACC
94848219 TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
66 TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
94848284 GATATTATTGGTACAGAAGAAGTTCAGTCTTGCAGTAAACGGATAATGATTCCCGTCTGGTGATA
131 GATATTATTGGTACAGAAGAAGTTCAGTCTTGCAGTAAACGGATAATGATTCCCGTCTGGTGATA
*
94848349 TTAAGTCCCTCACTTCTCATTCTCCACGGATTTGGTAAATCACTAGGGCTGAGTCCCCGTACACC
1 TTAAGTCCCTCACTTCTCATTCTCCACGGATTTGGTAAATCACTAGGGCTGAATCCCCGTACACC
94848414 TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
66 TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
*
94848479 GATATTATTGGTACAGAAGAAGTTCAGTCTTGCAGTAAACGGATAATGATTCCTGTCTGGTGATA
131 GATATTATTGGTACAGAAGAAGTTCAGTCTTGCAGTAAACGGATAATGATTCCCGTCTGGTGATA
94848544 CCAGGATTGC
Statistics
Matches: 192, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
195 192 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (195 bp):
TTAAGTCCCTCACTTCTCATTCTCCACGGATTTGGTAAATCACTAGGGCTGAATCCCCGTACACC
TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
GATATTATTGGTACAGAAGAAGTTCAGTCTTGCAGTAAACGGATAATGATTCCCGTCTGGTGATA
Found at i:94853764 original size:16 final size:16
Alignment explanation
Indices: 94853740--94853776 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
94853730 TTTTACCTTG
*
94853740 ATTTGTCAAACCCTCA
1 ATTTCTCAAACCCTCA
94853756 ATTTCTCAAACCCTCA
1 ATTTCTCAAACCCTCA
94853772 ATTTC
1 ATTTC
94853777 CCATCTCTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.30, C:0.32, G:0.03, T:0.35
Consensus pattern (16 bp):
ATTTCTCAAACCCTCA
Found at i:94857435 original size:27 final size:28
Alignment explanation
Indices: 94857387--94857440 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
94857377 GTCACATCAA
*
94857387 CAAATAAATCAAAAATTATAAAAATATT
1 CAAAAAAATCAAAAATTATAAAAATATT
* *
94857415 CAAAAAAAT-AAAAATTTTAAATATAT
1 CAAAAAAATCAAAAATTATAAAAATAT
94857441 ATAAATTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.30
Consensus pattern (28 bp):
CAAAAAAATCAAAAATTATAAAAATATT
Found at i:94858755 original size:20 final size:21
Alignment explanation
Indices: 94858730--94858772 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
94858720 TTAATTAAAT
94858730 AAATTA-TTAAAA-ATTCATAA
1 AAATTATTTAAAAGATT-ATAA
94858750 AAATTATTTAAAAGATTATAA
1 AAATTATTTAAAAGATTATAA
94858771 AA
1 AA
94858773 TCGGTTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.29
21 12 0.57
22 3 0.14
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
AAATTATTTAAAAGATTATAA
Found at i:94880106 original size:26 final size:26
Alignment explanation
Indices: 94880077--94880184 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
94880067 TGGTACAAAT
94880077 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
94880103 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
94880129 TGATAATGGGTTAGGAAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
94880155 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94880181 TGAT
1 TGAT
94880185 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:94884255 original size:41 final size:41
Alignment explanation
Indices: 94884210--94884318 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 41
94884200 ACCATGTACA
* *
94884210 TCACACGGTCGTATGGTAGGCCTTGTGGCAGACCGCGTAGG
1 TCACACGGACGTATGGTAAGCCTTGTGGCAGACCGCGTAGG
*
94884251 TCACAC-GAC-TATGTGTTAAGCCTTGTGGCAGACCGTGTAGG
1 TCACACGGACGTATG-G-TAAGCCTTGTGGCAGACCGCGTAGG
* *
94884292 TCACACGGCCGTGTGGTAAGCC-TGTGG
1 TCACACGGACGTATGGTAAGCCTTGTGG
94884319 GAAACATTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
39 4 0.07
40 8 0.14
41 41 0.69
42 3 0.05
43 3 0.05
ACGTcount: A:0.18, C:0.24, G:0.34, T:0.24
Consensus pattern (41 bp):
TCACACGGACGTATGGTAAGCCTTGTGGCAGACCGCGTAGG
Found at i:94889078 original size:17 final size:18
Alignment explanation
Indices: 94889046--94889079 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94889036 ATGTGACCTG
*
94889046 CCCGTTTGGACCCACACA
1 CCCGTGTGGACCCACACA
94889064 CCCGTGTGG-CCCACAC
1 CCCGTGTGGACCCACAC
94889080 GGCCCAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.18, C:0.47, G:0.21, T:0.15
Consensus pattern (18 bp):
CCCGTGTGGACCCACACA
Found at i:94891084 original size:2 final size:2
Alignment explanation
Indices: 94891077--94891104 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
94891067 GTATTTTTAC
94891077 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94891105 AAGAAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94893177 original size:18 final size:18
Alignment explanation
Indices: 94893154--94893199 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
94893144 GAAGAAGTGA
*
94893154 AAGATACACCCAAAACAG
1 AAGATACACCCAAAAAAG
*
94893172 AAGATAAACCCAAAAAAG
1 AAGATACACCCAAAAAAG
*
94893190 AAGATCCACC
1 AAGATACACC
94893200 AAAGCCCAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.57, C:0.26, G:0.11, T:0.07
Consensus pattern (18 bp):
AAGATACACCCAAAAAAG
Found at i:94893573 original size:6 final size:6
Alignment explanation
Indices: 94893562--94893588 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
94893552 CTATAAGGAA
94893562 GTGCAT GTGCAT GTGCAT GTGCAT GTG
1 GTGCAT GTGCAT GTGCAT GTGCAT GTG
94893589 AATCATTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.33
Consensus pattern (6 bp):
GTGCAT
Found at i:94893774 original size:29 final size:29
Alignment explanation
Indices: 94893704--94893774 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
94893694 TAAGGATTGA
* *
94893704 ATTAAATTAATTTTTCTATTATTAAATAT
1 ATTAAATTAATTTTTATATTATTAAAAAT
* *
94893733 ATTAATTTTATTTTTATATTATTAAAAAT
1 ATTAAATTAATTTTTATATTATTAAAAAT
* *
94893762 TTTAAATAAATTT
1 ATTAAATTAATTT
94893775 AAATTACAAC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (29 bp):
ATTAAATTAATTTTTATATTATTAAAAAT
Found at i:94894900 original size:16 final size:15
Alignment explanation
Indices: 94894871--94894899 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
94894861 TGGTATAATA
94894871 AAATATTTTAAAAAT
1 AAATATTTTAAAAAT
94894886 AAATATTTTAAAAA
1 AAATATTTTAAAAA
94894900 AAGAGACACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AAATATTTTAAAAAT
Found at i:94895501 original size:19 final size:19
Alignment explanation
Indices: 94895466--94895523 Score: 82
Period size: 20 Copynumber: 3.1 Consensus size: 19
94895456 TTCTTTAAAA
94895466 TATAAAT-TTTGGAATTTT
1 TATAAATATTTGGAATTTT
*
94895484 TATAAATATTTTGAATTTT
1 TATAAATATTTGGAATTTT
*
94895503 TGAAAAATATTTGGAATTTT
1 T-ATAAATATTTGGAATTTT
94895523 T
1 T
94895524 TCTATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
18 7 0.20
19 11 0.31
20 17 0.49
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.53
Consensus pattern (19 bp):
TATAAATATTTGGAATTTT
Found at i:94895943 original size:56 final size:57
Alignment explanation
Indices: 94895836--94895948 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 57
94895826 TGGTTAAGGA
94895836 AGTCAACTTATTATAATAGTATTATGGGAAGGTAATATATGCATGTTCCAGCACCAT
1 AGTCAACTTATTATAATAGTATTATGGGAAGGTAATATATGCATGTTCCAGCACCAT
*
94895893 AGTCAACTTATTATGATAGTATTAT-GGAAGGTAATATATGCATGTTCCAGCACCAT
1 AGTCAACTTATTATAATAGTATTATGGGAAGGTAATATATGCATGTTCCAGCACCAT
94895949 TCTTTTTTAT
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
56 31 0.56
57 24 0.44
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34
Consensus pattern (57 bp):
AGTCAACTTATTATAATAGTATTATGGGAAGGTAATATATGCATGTTCCAGCACCAT
Found at i:94896656 original size:20 final size:19
Alignment explanation
Indices: 94896623--94896669 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
94896613 TTTATATTTT
94896623 TAAAAAA-TACTATT-TACTA
1 TAAAAAATTACTATTGTA--A
*
94896642 TAAAAAATTATTATTGTAA
1 TAAAAAATTACTATTGTAA
94896661 TAAAAAATT
1 TAAAAAATT
94896670 TAAACAAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 17 0.68
20 6 0.24
21 2 0.08
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.38
Consensus pattern (19 bp):
TAAAAAATTACTATTGTAA
Found at i:94905012 original size:20 final size:20
Alignment explanation
Indices: 94904987--94905026 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
94904977 AGGTTAGGAC
*
94904987 TTATTTTAGGGTTAGAGTTT
1 TTATTTTAAGGTTAGAGTTT
*
94905007 TTATTTTAAGGTTAGGGTTT
1 TTATTTTAAGGTTAGAGTTT
94905027 AGGGTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (20 bp):
TTATTTTAAGGTTAGAGTTT
Found at i:94907367 original size:27 final size:28
Alignment explanation
Indices: 94907328--94907449 Score: 126
Period size: 27 Copynumber: 4.5 Consensus size: 28
94907318 ATATAACCTT
** * *
94907328 ATGTTTAACGTCCTAG-CGGATTACCTC
1 ATGTTTATTGTCCTAGACGGACTACCCC
* *
94907355 ATGTTTATTGTCC-CGACGGACTACCCT
1 ATGTTTATTGTCCTAGACGGACTACCCC
* *
94907382 GTGTTTATTGTCCTAG-TGGACTACCCC
1 ATGTTTATTGTCCTAGACGGACTACCCC
* *
94907409 ATTTTTATTGTCC-CGACGGACTACCCC
1 ATGTTTATTGTCCTAGACGGACTACCCC
94907436 ATGTTTATTGTCCT
1 ATGTTTATTGTCCT
94907450 GGTGAACAAC
Statistics
Matches: 76, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
26 2 0.03
27 73 0.96
28 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (28 bp):
ATGTTTATTGTCCTAGACGGACTACCCC
Found at i:94907416 original size:54 final size:54
Alignment explanation
Indices: 94907328--94907473 Score: 175
Period size: 54 Copynumber: 2.7 Consensus size: 54
94907318 ATATAACCTT
** * * * * *
94907328 ATGTTTAACGTCCTAGCGGATTACCTCATGTTTATTGTCCCGACGGACTACCCT
1 ATGTTTATTGTCCTAGTGGACTACCCCATTTTTATTGTCCCGACGGACTACCCC
*
94907382 GTGTTTATTGTCCTAGTGGACTACCCCATTTTTATTGTCCCGACGGACTACCCC
1 ATGTTTATTGTCCTAGTGGACTACCCCATTTTTATTGTCCCGACGGACTACCCC
* * * **
94907436 ATGTTTATTGTCCTGGTGAACAACCGTATTTTTATTGT
1 ATGTTTATTGTCCTAGTGGACTACCCCATTTTTATTGT
94907474 TCCAGTGGAC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.38
Consensus pattern (54 bp):
ATGTTTATTGTCCTAGTGGACTACCCCATTTTTATTGTCCCGACGGACTACCCC
Found at i:94909107 original size:37 final size:37
Alignment explanation
Indices: 94909054--94909175 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
94909044 TTATTACGAA
* *
94909054 GTCTTACCCGGACATAATCTTCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
94909091 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
94909128 GTCTTACCCGGTCATAATCTCCACACGTAGTCATTGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
94909165 GTCTCACCCGG
1 GTCTTACCCGG
94909176 AACATATTCC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:94909332 original size:49 final size:49
Alignment explanation
Indices: 94909277--94909442 Score: 296
Period size: 49 Copynumber: 3.4 Consensus size: 49
94909267 TTTTACATTA
*
94909277 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
94909326 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
94909375 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
94909424 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
94909443 CATATATGTA
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 113 1.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:94912241 original size:23 final size:23
Alignment explanation
Indices: 94912213--94912397 Score: 212
Period size: 23 Copynumber: 8.0 Consensus size: 23
94912203 CGCACGACCA
* * *
94912213 CCCTTAATAAATGTTATGCAAAC
1 CCCTTAGTGAATGTTATGCGAAC
94912236 CCCTTAGTGAATGTTATGCGAAC
1 CCCTTAGTGAATGTTATGCGAAC
* * *
94912259 CCCTTAATGAATGTTGTGTGAAC
1 CCCTTAGTGAATGTTATGCGAAC
*
94912282 CCCTTACTGAATGTTATGCGAAC
1 CCCTTAGTGAATGTTATGCGAAC
** *
94912305 ATCTTAGTGAATGTTATGTGAA-
1 CCCTTAGTGAATGTTATGCGAAC
94912327 CCCTTCAGTGAATGTTATGCGAAC
1 CCCTT-AGTGAATGTTATGCGAAC
* **
94912351 CCCTTAGTAAATGTTATTTGAAC
1 CCCTTAGTGAATGTTATGCGAAC
*
94912374 CCCTT-GATGAATGTTATGCAAAC
1 CCCTTAG-TGAATGTTATGCGAAC
94912397 C
1 C
94912398 TTGTTGGAAA
Statistics
Matches: 136, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
22 4 0.03
23 127 0.93
24 5 0.04
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (23 bp):
CCCTTAGTGAATGTTATGCGAAC
Found at i:94914732 original size:25 final size:25
Alignment explanation
Indices: 94914698--94914746 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
94914688 TGATCCTTTT
* *
94914698 AACTATTATGTGAACCCTTTTGTAA
1 AACTATTATGCGAACCCTTATGTAA
*
94914723 AACTGTTATGCGAACCCTTATGTA
1 AACTATTATGCGAACCCTTATGTA
94914747 TAATGTACTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (25 bp):
AACTATTATGCGAACCCTTATGTAA
Found at i:94914797 original size:12 final size:12
Alignment explanation
Indices: 94914759--94914798 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
94914749 ATGTACTGCA
94914759 AACACTCATGTG
1 AACACTCATGTG
* *
94914771 AACCCTCATTCTG
1 AACACTCA-TGTG
94914784 AACACTCATGTG
1 AACACTCATGTG
94914796 AAC
1 AAC
94914799 CTTCAATGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.33, C:0.30, G:0.12, T:0.25
Consensus pattern (12 bp):
AACACTCATGTG
Found at i:94914811 original size:25 final size:25
Alignment explanation
Indices: 94914759--94914826 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
94914749 ATGTACTGCA
* *
94914759 AACACTCATGTGAACCCTCATTCTG
1 AACACTCATGTGAACCTTCATGCTG
94914784 AACACTCATGTGAACCTTCAATGC-G
1 AACACTCATGTGAACCTTC-ATGCTG
* *
94914809 AACATTCATGCGAACCTT
1 AACACTCATGTGAACCTT
94914827 ATCTACGAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 35 0.92
26 3 0.08
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (25 bp):
AACACTCATGTGAACCTTCATGCTG
Found at i:94915349 original size:47 final size:47
Alignment explanation
Indices: 94915285--94915411 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
94915275 CAACAGTTTT
* * *
94915285 TCTGCTTGACCAGTGGTTTATCCATAATATATTTTAGTCAGCAGCCG
1 TCTGCTCGACTAGTGGTTTATCCATAATATATTTTAGTCAGCAGCCA
* * * * * *
94915332 TCTGTTTGATTAGTGGTTTATCCATGACATATTTTAGTCAGCAGTCA
1 TCTGCTCGACTAGTGGTTTATCCATAATATATTTTAGTCAGCAGCCA
* * *
94915379 TCTGCTCGACTAGTGGTTCATCCACAATGTATT
1 TCTGCTCGACTAGTGGTTTATCCATAATATATT
94915412 AGCAGCTTTT
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.39
Consensus pattern (47 bp):
TCTGCTCGACTAGTGGTTTATCCATAATATATTTTAGTCAGCAGCCA
Found at i:94932992 original size:16 final size:16
Alignment explanation
Indices: 94932971--94933036 Score: 105
Period size: 16 Copynumber: 4.1 Consensus size: 16
94932961 GTTCATTGTG
94932971 ATGGAATAGAGCTGTA
1 ATGGAATAGAGCTGTA
94932987 ATGGAATAGAGCTGTA
1 ATGGAATAGAGCTGTA
* *
94933003 ATTGAATAGAACTGTA
1 ATGGAATAGAGCTGTA
*
94933019 ATGGAATAGGGCTGTA
1 ATGGAATAGAGCTGTA
94933035 AT
1 AT
94933037 AAGTAATTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.38, C:0.06, G:0.29, T:0.27
Consensus pattern (16 bp):
ATGGAATAGAGCTGTA
Found at i:94933305 original size:17 final size:17
Alignment explanation
Indices: 94933283--94933315 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
94933273 AATAATTATT
94933283 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
94933300 AAATATAATTTAATAA
1 AAATATAATTTAATAA
94933316 CATTCATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:94933490 original size:20 final size:18
Alignment explanation
Indices: 94933461--94933502 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 18
94933451 CGGAAAATAA
94933461 TTTTTTGAAAATGATTTAC
1 TTTTTTG-AAATGATTTAC
94933480 TTTTTTAGAAATGATTTAC
1 TTTTTT-GAAATGATTTAC
94933499 TTTT
1 TTTT
94933503 ATGATGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 21 0.95
20 1 0.05
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.57
Consensus pattern (18 bp):
TTTTTTGAAATGATTTAC
Found at i:94933645 original size:2 final size:2
Alignment explanation
Indices: 94933638--94933662 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
94933628 TATTTGAGTT
94933638 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
94933663 TAATAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:94937915 original size:28 final size:29
Alignment explanation
Indices: 94937883--94937981 Score: 141
Period size: 28 Copynumber: 3.5 Consensus size: 29
94937873 AATGAGATTG
94937883 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
94937911 GCACTAAGTGTGCGAGTTTGAATTGCATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
* *
94937940 GCATTAAGTGTGGGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
94937968 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
94937982 GACTTATTGT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
28 32 0.51
29 30 0.48
30 1 0.02
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:94943076 original size:13 final size:13
Alignment explanation
Indices: 94943055--94943086 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
94943045 TCTGTGTGTG
94943055 TTTCCTTTTTTTT
1 TTTCCTTTTTTTT
*
94943068 TTTCTTTTTTTTT
1 TTTCCTTTTTTTT
94943081 TTTCCT
1 TTTCCT
94943087 CTTTGTTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTCCTTTTTTTT
Found at i:94943802 original size:31 final size:31
Alignment explanation
Indices: 94943767--94943836 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
94943757 TTATTATTCC
*
94943767 ATTTGGTACTT-A-TATTTAGTTTTAATATTTA
1 ATTTGGTACTTGAGT-TTT-GTTTCAATATTTA
94943798 ATTTGGTACTTGAGTTTTGTTTCAATATTTA
1 ATTTGGTACTTGAGTTTTGTTTCAATATTTA
*
94943829 ATTCGGTA
1 ATTTGGTA
94943837 TATAAACTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 30 0.86
32 4 0.11
33 1 0.03
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (31 bp):
ATTTGGTACTTGAGTTTTGTTTCAATATTTA
Found at i:94954939 original size:3 final size:3
Alignment explanation
Indices: 94954925--94954963 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
94954915 TGTACTTGTT
* *
94954925 TTA TTT TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
94954964 ACTCAAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:94956610 original size:12 final size:12
Alignment explanation
Indices: 94956593--94956620 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
94956583 AGTTAATTTT
94956593 AAAATTGAAAAG
1 AAAATTGAAAAG
94956605 AAAATTGAAAAG
1 AAAATTGAAAAG
94956617 AAAA
1 AAAA
94956621 AAATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (12 bp):
AAAATTGAAAAG
Found at i:94957091 original size:15 final size:15
Alignment explanation
Indices: 94957050--94957092 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
94957040 TTCTATGTAA
* *
94957050 AAATATATTAAATAT
1 AAATATATAAAAAAT
* *
94957065 ATATAAATAAAAAAT
1 AAATATATAAAAAAT
94957080 AAATATATAAAAA
1 AAATATATAAAAA
94957093 CCTCAAAAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATATATAAAAAAT
Found at i:94963098 original size:23 final size:23
Alignment explanation
Indices: 94963072--94963116 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
94963062 TCGGCCATAT
*
94963072 TATTTTTTTTAAATTT-ATATTTG
1 TATTATTTTT-AATTTAATATTTG
94963095 TATTATTTTTAATTTAATATTT
1 TATTATTTTTAATTTAATATTT
94963117 AATAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (23 bp):
TATTATTTTTAATTTAATATTTG
Found at i:94963124 original size:22 final size:23
Alignment explanation
Indices: 94963077--94963139 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 23
94963067 CATATTATTT
* *
94963077 TTTTTAAATTTATATTTGTATTA
1 TTTTTAAATTTATATTTGAATAA
94963100 TTTTT-AATTTAATATTT-AATAA
1 TTTTTAAATTT-ATATTTGAATAA
* *
94963122 TTTTATATATTTTTATTT
1 TTTT-TAAATTTATATTT
94963140 ATTAAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
22 12 0.36
23 17 0.52
24 4 0.12
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTTAAATTTATATTTGAATAA
Found at i:94971436 original size:11 final size:11
Alignment explanation
Indices: 94971420--94971449 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
94971410 CTCTTAACTT
94971420 AAAGCAATTCC
1 AAAGCAATTCC
94971431 AAAGCAATTCC
1 AAAGCAATTCC
94971442 AAAGCAAT
1 AAAGCAAT
94971450 ATTAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.50, C:0.23, G:0.10, T:0.17
Consensus pattern (11 bp):
AAAGCAATTCC
Found at i:94971911 original size:20 final size:20
Alignment explanation
Indices: 94971886--94971924 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
94971876 AATTTTATAT
94971886 TTATATAG-ATTTTTATTTTA
1 TTATATAGTATTTTT-TTTTA
94971906 TTATATAGTATTTTTTTTT
1 TTATATAGTATTTTTTTTT
94971925 TCCTTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (20 bp):
TTATATAGTATTTTTTTTTA
Found at i:94973653 original size:2 final size:2
Alignment explanation
Indices: 94973642--94973674 Score: 57
Period size: 2 Copynumber: 16.0 Consensus size: 2
94973632 TATCTTACTT
94973642 TA TA TGA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA
94973675 AGCTCCTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 28 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:94975596 original size:30 final size:31
Alignment explanation
Indices: 94975541--94975598 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
94975531 TGTCAAAATT
*
94975541 AAAATATATAGATTAAATCTAAAATTTAAGC
1 AAAATACATAGATTAAATCTAAAATTTAAGC
* *
94975572 AAAATACATGGATTATAT-TAAAATTTA
1 AAAATACATAGATTAAATCTAAAATTTA
94975599 GCCATTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 9 0.38
31 15 0.62
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.34
Consensus pattern (31 bp):
AAAATACATAGATTAAATCTAAAATTTAAGC
Found at i:94978396 original size:20 final size:20
Alignment explanation
Indices: 94978344--94978396 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 20
94978334 CTATACCTTT
94978344 GAAA-TTTAAAAAAGGAAAA
1 GAAATTTTAAAAAAGGAAAA
** *
94978363 -AAATTGAAAAAAAAGAAAA
1 GAAATTTTAAAAAAGGAAAA
94978382 GAAATTTTAATAAAA
1 GAAATTTTAA-AAAA
94978397 ATACCCATGG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
18 3 0.12
19 12 0.46
20 7 0.27
21 4 0.15
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.19
Consensus pattern (20 bp):
GAAATTTTAAAAAAGGAAAA
Found at i:94979702 original size:23 final size:22
Alignment explanation
Indices: 94979672--94979715 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
94979662 AAACCAAATT
* *
94979672 CTATTAAATAAATAATTATAAA
1 CTATTAAATAAACAATCATAAA
94979694 CTATATAAATAAACAATCATAA
1 CTAT-TAAATAAACAATCATAA
94979716 TTAGGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (22 bp):
CTATTAAATAAACAATCATAAA
Found at i:94979808 original size:17 final size:16
Alignment explanation
Indices: 94979797--94979838 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
94979787 TAAATATAAT
94979797 TTTATAAAAAATTTAAGA
1 TTTATAAAAAA-TTAA-A
94979815 -TTA-AAAAAATTAAA
1 TTTATAAAAAATTAAA
94979829 TTTATAAAAA
1 TTTATAAAAA
94979839 CAAAAATTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 1 0.05
15 7 0.32
16 11 0.50
17 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (16 bp):
TTTATAAAAAATTAAA
Found at i:95006348 original size:21 final size:22
Alignment explanation
Indices: 95006307--95006348 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
95006297 ATAAAAAATC
95006307 TATTTAGAAAAAAGGTCAAATTT
1 TATTTAGAAAAAAGG-CAAATTT
95006330 TATTTA-AAATAAAGG-AAAT
1 TATTTAGAAA-AAAGGCAAAT
95006349 ATTTCCACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.22
22 3 0.17
23 11 0.61
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.33
Consensus pattern (22 bp):
TATTTAGAAAAAAGGCAAATTT
Found at i:95010943 original size:2 final size:2
Alignment explanation
Indices: 95010932--95010964 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
95010922 ATTAAGTTAT
*
95010932 TA TA -A TA TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95010965 AAGTAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:95010977 original size:16 final size:16
Alignment explanation
Indices: 95010958--95011003 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
95010948 ATATATATAT
* *
95010958 AAATATAAAGTAAAAG
1 AAATAAAAAGAAAAAG
95010974 AAATAAAAAGAAAAAG
1 AAATAAAAAGAAAAAG
*
95010990 AATAGAAAAAGAAA
1 AA-ATAAAAAGAAA
95011004 GAAAGGATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 16 0.62
17 10 0.38
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (16 bp):
AAATAAAAAGAAAAAG
Found at i:95010998 original size:11 final size:10
Alignment explanation
Indices: 95010970--95011007 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
95010960 ATATAAAGTA
95010970 AAAGAAATAA-
1 AAAGAAA-AAG
95010980 AAAGAAAAAG
1 AAAGAAAAAG
95010990 AATAGAAAAAG
1 AA-AGAAAAAG
95011001 AAAGAAA
1 AAAGAAA
95011008 GGATGAAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.08
10 14 0.54
11 10 0.38
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:95011064 original size:16 final size:16
Alignment explanation
Indices: 95011045--95011076 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95011035 AAGAAACAAG
95011045 GAAGGAAAAAAGGAAA
1 GAAGGAAAAAAGGAAA
*
95011061 GAAGGAAAAAGGGAAA
1 GAAGGAAAAAAGGAAA
95011077 AATTAGGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (16 bp):
GAAGGAAAAAAGGAAA
Found at i:95013143 original size:46 final size:46
Alignment explanation
Indices: 95013091--95013550 Score: 731
Period size: 46 Copynumber: 10.0 Consensus size: 46
95013081 AGTGTGCTCT
*
95013091 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
95013137 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
95013183 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
95013229 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
*
95013275 CTAATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
95013321 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
95013367 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
*
95013413 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
95013459 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
95013505 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
95013551 ATGACAGAAA
Statistics
Matches: 393, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 393 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:95013610 original size:92 final size:91
Alignment explanation
Indices: 95013091--95013610 Score: 592
Period size: 92 Copynumber: 5.6 Consensus size: 91
95013081 AGTGTGCTCT
* * * **
95013091 CTGATATGAAATGT-GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAACGTGTAA
1 CTGATATGAAATGTAGTAAGACCATGGTTGAAAGATACCATGGCAA-CTCATGT-AAAAGAATAA
95013155 GACCATGGTTGAAAGATACCATGGCAAC
64 GACCATGGTTGAAAGATACCATGGCAAC
* * * * *
95013183 CTGATATGAAACGT-GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTATAA
1 CTGATATGAAATGTAGTAAGACCATGGTTGAAAGATACCATGGCAA-CTCATGT-AAAAGAATAA
95013247 GACCATGGTTGAAAGATACCATGGCAAC
64 GACCATGGTTGAAAGATACCATGGCAAC
*
95013275 CTAATATGAAATGTA-TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG-AAAAGAATA
1 CTGATATGAAATGTAGTAAGACCATGGTTGAAAGATACCATGGCAAC-T--CATGTAAAAGAATA
95013338 AGACCATGGTTGAAAGATACCATGGCAAC
63 AGACCATGGTTGAAAGATACCATGGCAAC
* * * *
95013367 CTGATATGAAATGT-GTAAGACCATGGTTGAAAGATATCATGGCAACCTGATATGAAATGAATAA
1 CTGATATGAAATGTAGTAAGACCATGGTTGAAAGATACCATGGCAA-CTCATGT-AAAAGAATAA
95013431 GACCATGGTTGAAAGATACCATGGCAAC
64 GACCATGGTTGAAAGATACCATGGCAAC
* * * *
95013459 GTGACATGAAAAG-AATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG-AAAAGAATA
1 CTGATATGAAATGTAGTAAGACCATGGTTGAAAGATACCATGGCAAC-T--CATGTAAAAGAATA
95013522 AGACCATGGTTGAAAGATACCATGGCAAC
63 AGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
95013551 ATGACA-GAAAATGAATGAGTAAGATCATAGTTGAAAGACACTATGGC-A-TCATGTCAAAGA
1 CTGATATG-AAATG--T-AGTAAGACCATGGTTGAAAGATACCATGGCAACTCATGTAAAAGA
95013611 TAAATAGACC
Statistics
Matches: 380, Mismatches: 30, Indels: 36
0.85 0.07 0.08
Matches are distributed among these distances:
90 2 0.01
91 7 0.02
92 339 0.89
93 2 0.01
94 4 0.01
95 1 0.00
96 25 0.07
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (91 bp):
CTGATATGAAATGTAGTAAGACCATGGTTGAAAGATACCATGGCAACTCATGTAAAAGAATAAGA
CCATGGTTGAAAGATACCATGGCAAC
Found at i:95017014 original size:13 final size:14
Alignment explanation
Indices: 95016996--95017025 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
95016986 TTTGTTCAAA
95016996 TTTTATA-TTTAAT
1 TTTTATATTTTAAT
95017009 TTTTATATTTTAAT
1 TTTTATATTTTAAT
95017023 TTT
1 TTT
95017026 GATACCTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTATATTTTAAT
Found at i:95017114 original size:161 final size:162
Alignment explanation
Indices: 95016937--95017310 Score: 377
Period size: 161 Copynumber: 2.3 Consensus size: 162
95016927 TTTTTCTACT
* * ** * * *
95016937 TTTTTATGATTATATAAAAATGGTTAAATTTCAGTTTTCATTCTTATATTTTGTTCAAATTTTAT
1 TTTTTAAGATTATATAAAAAT-GTTAAATTTCAGTTTTCA-TCCTATATTTTACTCAAAATTGAG
* ***
95017002 ATTTAATTTT-TATATTTTA-A-TTTTGATAC-CTCTCCATTCTTTTCTTTTC-TTTGACACGAG
64 ATTTAATTTTATATAATTTAGACGCCT-ATACGCTCTCCATTCTTTTCTTTTCATTTGACACGAG
* * *
95017062 AAAAATAATGGCTAATTTCAATTTTAATCCCTATAC
128 -AAAATAATGGCCAATTTCAATTCTAATCCATATAC
* *
95017098 TTTTTAAGATTATATAAAAA--TTAAACTTC-GATTTTGATCCTATATTTTACTCAAAATTGAGA
1 TTTTTAAGATTATATAAAAATGTTAAATTTCAG-TTTTCATCCTATATTTTACTCAAAATTGAGA
* * *** *
95017160 TTTAATTTTGATATAATTTAGACGCCTATTCGTTCTTTTTTCTTTTCTTTTCATTTGACATGAGA
65 TTTAATTTT-ATATAATTTAGACGCCTATACGCTCTCCATTCTTTTCTTTTCATTTGACACGAGA
*
95017225 AAATAATGGCCAATTTCAATTCTAATCCATCTAC
129 AAATAATGGCCAATTTCAATTCTAATCCATATAC
* * *
95017259 TTTCTTAAGATTATAAAAAAATGATTAAATTTCAATTTTGATCCCTATATTT
1 TTT-TTAAGATTATATAAAAATG-TTAAATTTCAGTTTTCAT-CCTATATTT
95017311 CGCTCGAAAG
Statistics
Matches: 174, Mismatches: 26, Indels: 21
0.79 0.12 0.10
Matches are distributed among these distances:
157 29 0.17
158 13 0.07
159 8 0.05
160 4 0.02
161 70 0.40
162 26 0.15
165 15 0.09
166 9 0.05
ACGTcount: A:0.32, C:0.13, G:0.07, T:0.48
Consensus pattern (162 bp):
TTTTTAAGATTATATAAAAATGTTAAATTTCAGTTTTCATCCTATATTTTACTCAAAATTGAGAT
TTAATTTTATATAATTTAGACGCCTATACGCTCTCCATTCTTTTCTTTTCATTTGACACGAGAAA
ATAATGGCCAATTTCAATTCTAATCCATATAC
Found at i:95017850 original size:2 final size:2
Alignment explanation
Indices: 95017843--95017869 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
95017833 AACTATACTA
95017843 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
95017870 AAGAGATGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95020116 original size:13 final size:13
Alignment explanation
Indices: 95020098--95020123 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95020088 ATTAGTATAA
95020098 ATAAAATATAAAT
1 ATAAAATATAAAT
95020111 ATAAAATATAAAT
1 ATAAAATATAAAT
95020124 TAATAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAAAATATAAAT
Found at i:95021130 original size:20 final size:20
Alignment explanation
Indices: 95021105--95021161 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
95021095 TTTAGAAAAT
*
95021105 TTTAAAAATATATAAATTTA
1 TTTAAAAATATATAAAATTA
*
95021125 TTTAAAAA-ATTTAAAATTA
1 TTTAAAAATATATAAAATTA
* *
95021144 TTAAAAAATATACAAAAT
1 TTTAAAAATATATAAAAT
95021162 AAATTTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
TTTAAAAATATATAAAATTA
Found at i:95021139 original size:19 final size:19
Alignment explanation
Indices: 95021105--95021155 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
95021095 TTTAGAAAAT
*
95021105 TTTAAAAATATATAAATTTA
1 TTTAAAAA-ATATAAAATTA
*
95021125 TTTAAAAAATTTAAAATTA
1 TTTAAAAAATATAAAATTA
95021144 -TTAAAAAATATA
1 TTTAAAAAATATA
95021156 CAAAATAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 11 0.39
19 9 0.32
20 8 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TTTAAAAAATATAAAATTA
Found at i:95025146 original size:21 final size:22
Alignment explanation
Indices: 95025096--95025146 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
95025086 TAGATTAACG
* *
95025096 ATAATTATTTGCGTTAAATATT
1 ATAATTATATGCGCTAAATATT
*
95025118 ATAA-TATATGTGCTAAAT-TT
1 ATAATTATATGCGCTAAATATT
95025138 ATAATTATA
1 ATAATTATA
95025147 CACATAGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 6 0.24
21 15 0.60
22 4 0.16
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (22 bp):
ATAATTATATGCGCTAAATATT
Found at i:95025592 original size:35 final size:35
Alignment explanation
Indices: 95025552--95025625 Score: 121
Period size: 35 Copynumber: 2.1 Consensus size: 35
95025542 TAATTAAGGA
*
95025552 ACATTCAAGTGTAATTCAGCCTGCAAATGAACAAG
1 ACATTCAAGTGTAATTCAGCCTGCAAAAGAACAAG
**
95025587 ACATTCAAGTGTGCTTCAGCCTGCAAAAGAACAAG
1 ACATTCAAGTGTAATTCAGCCTGCAAAAGAACAAG
95025622 ACAT
1 ACAT
95025626 ATGGGTTAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.22
Consensus pattern (35 bp):
ACATTCAAGTGTAATTCAGCCTGCAAAAGAACAAG
Found at i:95025928 original size:44 final size:44
Alignment explanation
Indices: 95025880--95025971 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
95025870 ATGAATTTAA
* * *
95025880 TTTAATTGTTTTATTT-TTCATTTTGAAGGAAATAATATT-TCATT
1 TTTAATTGATTTATTTATT--TTTTGAAGCAAATAAAATTATCATT
*
95025924 TTTAATTGATTTATTTATTTTTTGAAGCAAATAAAATTATTATT
1 TTTAATTGATTTATTTATTTTTTGAAGCAAATAAAATTATCATT
95025968 TTTA
1 TTTA
95025972 GTTTAAGCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 17 0.40
44 23 0.55
45 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.57
Consensus pattern (44 bp):
TTTAATTGATTTATTTATTTTTTGAAGCAAATAAAATTATCATT
Found at i:95035572 original size:2 final size:2
Alignment explanation
Indices: 95035565--95035589 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95035555 TATACATAAC
95035565 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
95035590 AATAATAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95035630 original size:25 final size:24
Alignment explanation
Indices: 95035591--95035638 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
95035581 ATATATATAA
*
95035591 ATAATAAGTAGTATAAAAGTAAAAC
1 ATAATAAATAGTATAAAA-TAAAAC
* *
95035616 ATAATAAATATTATATAATAAAA
1 ATAATAAATAGTATAAAATAAAA
95035639 TATATGGGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.29
Consensus pattern (24 bp):
ATAATAAATAGTATAAAATAAAAC
Found at i:95038984 original size:15 final size:16
Alignment explanation
Indices: 95038964--95038993 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
95038954 AAATATAAAC
95038964 ATACAATT-AAAAGAA
1 ATACAATTCAAAAGAA
95038979 ATACAATTCAAAAGA
1 ATACAATTCAAAAGA
95038994 TAATTTAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.63, C:0.10, G:0.07, T:0.20
Consensus pattern (16 bp):
ATACAATTCAAAAGAA
Found at i:95044786 original size:20 final size:20
Alignment explanation
Indices: 95044754--95044791 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
95044744 TGTTTCACAT
95044754 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
95044774 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
95044792 ACTTAATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:95045796 original size:17 final size:17
Alignment explanation
Indices: 95045774--95045817 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
95045764 AAATCCCAAT
95045774 TTTCCCTTTTTCTTTTC
1 TTTCCCTTTTTCTTTTC
95045791 TTTCCCTTTTTCTTTTC
1 TTTCCCTTTTTCTTTTC
95045808 TTTCCCTTTT
1 TTTCCCTTTT
95045818 CTTCCCCTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTCCCTTTTTCTTTTC
Found at i:95045918 original size:9 final size:9
Alignment explanation
Indices: 95045888--95045912 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
95045878 CTTTTATTCT
95045888 TTTATTTAC
1 TTTATTTAC
95045897 TTTATTTAC
1 TTTATTTAC
95045906 TTTATTT
1 TTTATTT
95045913 TTTTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTATTTAC
Found at i:95049830 original size:14 final size:15
Alignment explanation
Indices: 95049807--95049940 Score: 64
Period size: 14 Copynumber: 8.9 Consensus size: 15
95049797 AAAAAAGGAT
*
95049807 ATATACATAATAA-A
1 ATATATATAATAAGA
95049821 ATATATATAA-AAGA
1 ATATATATAATAAGA
95049835 ATATATA-AGA-AA-A
1 ATATATATA-ATAAGA
* *
95049848 ATAAATATTATAAGGA
1 ATATATATAATAA-GA
*
95049864 ATGTTATATAATAAGA
1 AT-ATATATAATAAGA
*
95049880 TATAGTATGTAATAA-A
1 -ATA-TATATAATAAGA
* * *
95049896 ATATAAATAATTATA
1 ATATATATAATAAGA
* * *
95049911 ATGAAATATAATATGGT
1 AT-ATATATAATA-AGA
95049928 ATATATATAATAA
1 ATATATATAATAA
95049941 TAGTAATAAT
Statistics
Matches: 89, Mismatches: 19, Indels: 23
0.68 0.15 0.18
Matches are distributed among these distances:
13 11 0.12
14 29 0.33
15 6 0.07
16 22 0.25
17 21 0.24
ACGTcount: A:0.57, C:0.01, G:0.08, T:0.34
Consensus pattern (15 bp):
ATATATATAATAAGA
Found at i:95050308 original size:21 final size:22
Alignment explanation
Indices: 95050278--95050320 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
95050268 CATTAAAGCT
95050278 AAATTAAAAAATA-AATAAAATG
1 AAATTAAAAAATATAA-AAAATG
95050300 AAATT-AAAAATATAAAAAATG
1 AAATTAAAAAATATAAAAAATG
95050321 CAAGAGGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (22 bp):
AAATTAAAAAATATAAAAAATG
Found at i:95052007 original size:20 final size:20
Alignment explanation
Indices: 95051972--95052009 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
95051962 AAATTAGAAT
**
95051972 ATTAAATAAATCATAAAAAA
1 ATTAAATAAAAAATAAAAAA
95051992 ATTAAATAAAAAATAAAA
1 ATTAAATAAAAAATAAAA
95052010 TGGAATAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (20 bp):
ATTAAATAAAAAATAAAAAA
Found at i:95054528 original size:17 final size:17
Alignment explanation
Indices: 95054506--95054581 Score: 64
Period size: 17 Copynumber: 4.3 Consensus size: 17
95054496 GTAACTTTTT
* *
95054506 ATAAATCAAAATATAAA
1 ATAAATAAAAAAATAAA
*
95054523 ATAAATAAAAAAATTAA
1 ATAAATAAAAAAATAAA
95054540 ATAAA-AAATAAAATGAAA
1 ATAAATAAA-AAAAT-AAA
* *
95054558 TAGAAATAAATAAAACAAA
1 -ATAAATAAA-AAAATAAA
95054577 ATAAA
1 ATAAA
95054582 AAATGAATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
16 3 0.06
17 24 0.50
18 6 0.12
19 7 0.15
20 8 0.17
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (17 bp):
ATAAATAAAAAAATAAA
Found at i:95054540 original size:13 final size:12
Alignment explanation
Indices: 95054520--95054584 Score: 55
Period size: 12 Copynumber: 5.2 Consensus size: 12
95054510 ATCAAAATAT
95054520 AAAATAAATAAA
1 AAAATAAATAAA
95054532 AAAATTAAAT-AA
1 AAAA-TAAATAAA
95054544 AAAATAAAATGAAA
1 AAAAT-AAAT-AAA
95054558 TAGAAATAAAT-AA
1 -A-AAATAAATAAA
*
95054571 AACA-AAATAAA
1 AAAATAAATAAA
95054582 AAA
1 AAA
95054585 TGAATAAACC
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
10 4 0.09
11 7 0.16
12 15 0.34
13 7 0.16
14 2 0.05
15 5 0.11
16 4 0.09
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (12 bp):
AAAATAAATAAA
Found at i:95054552 original size:5 final size:5
Alignment explanation
Indices: 95054518--95054582 Score: 55
Period size: 5 Copynumber: 13.2 Consensus size: 5
95054508 AAATCAAAAT
* * *
95054518 ATAAA AT-AA ATAAA A-AAA TTAAA TAAAAA ATAAA ATGAA ATAGAA AT-AA
1 ATAAA ATAAA ATAAA ATAAA ATAAA -ATAAA ATAAA ATAAA ATA-AA ATAAA
*
95054567 ATAAA ACAAA ATAAA A
1 ATAAA ATAAA ATAAA A
95054583 AATGAATAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
4 11 0.23
5 29 0.62
6 7 0.15
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (5 bp):
ATAAA
Found at i:95054553 original size:36 final size:38
Alignment explanation
Indices: 95054508--95054585 Score: 90
Period size: 37 Copynumber: 2.1 Consensus size: 38
95054498 AACTTTTTAT
* **
95054508 AAATCAAAAT-ATAAAATAAATAAA-AAAATTAAATAAA
1 AAATCAAAATGA-AAAAGAAATAAATAAAACAAAATAAA
*
95054545 AAAT-AAAATGAAATAGAAATAAATAAAACAAAATAAA
1 AAATCAAAATGAAAAAGAAATAAATAAAACAAAATAAA
95054582 AAAT
1 AAAT
95054586 GAATAAACCG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
36 15 0.43
37 20 0.57
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (38 bp):
AAATCAAAATGAAAAAGAAATAAATAAAACAAAATAAA
Found at i:95056601 original size:2 final size:2
Alignment explanation
Indices: 95056584--95056628 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
95056574 TAGTTTACCC
* *
95056584 AT AT AT AC AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95056626 AT A
1 AT A
95056629 ACAAGACATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:95062380 original size:20 final size:21
Alignment explanation
Indices: 95062353--95062393 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
95062343 TTCTAATATA
95062353 ATTTTTTTGTAA-TTTTAAAAT
1 ATTTTTTTG-AATTTTTAAAAT
95062374 ATTTTTTTGAATTTTTAAAA
1 ATTTTTTTGAATTTTTAAAA
95062394 ATTAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (21 bp):
ATTTTTTTGAATTTTTAAAAT
Found at i:95062508 original size:34 final size:34
Alignment explanation
Indices: 95062465--95062533 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
95062455 AACAAAAGTT
95062465 AACGAACATTAACTTTTCCATTTATGTTAGAGTG
1 AACGAACATTAACTTTTCCATTTATGTTAGAGTG
95062499 AACGAACATTAACTTTTCCATTTATGTTAGAGTG
1 AACGAACATTAACTTTTCCATTTATGTTAGAGTG
95062533 A
1 A
95062534 TTTGACAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (34 bp):
AACGAACATTAACTTTTCCATTTATGTTAGAGTG
Found at i:95066100 original size:18 final size:19
Alignment explanation
Indices: 95066079--95066116 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
95066069 TATTAATTTA
95066079 ATTTAAA-TTTTTAAAAAT
1 ATTTAAATTTTTTAAAAAT
95066097 ATTTAAATTTTTTAAAAAT
1 ATTTAAATTTTTTAAAAAT
95066116 A
1 A
95066117 AAAAATACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTTAAATTTTTTAAAAAT
Found at i:95066547 original size:19 final size:19
Alignment explanation
Indices: 95066523--95066560 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
95066513 TATGTGAATT
95066523 GTCATATAGATGACATGTC
1 GTCATATAGATGACATGTC
95066542 GTCATATAGATGACATGTC
1 GTCATATAGATGACATGTC
95066561 AATATTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (19 bp):
GTCATATAGATGACATGTC
Found at i:95067606 original size:23 final size:23
Alignment explanation
Indices: 95067566--95067611 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
95067556 TTAATTACAT
* **
95067566 ATAAAAAATACATCAAATAAAAA
1 ATAAAAAATAAAAAAAATAAAAA
*
95067589 ATAAAAAATAAAAAAAATTAAAA
1 ATAAAAAATAAAAAAAATAAAAA
95067612 TCATATGGGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.17
Consensus pattern (23 bp):
ATAAAAAATAAAAAAAATAAAAA
Found at i:95067776 original size:15 final size:15
Alignment explanation
Indices: 95067753--95067792 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
95067743 TCAGAATCTG
*
95067753 AGAAAAAAAAAGAAAA
1 AGAAAAAAAAA-TAAA
*
95067769 AGAAAAAAAAATACA
1 AGAAAAAAAAATAAA
95067784 AGAAAAAAA
1 AGAAAAAAA
95067793 TTCAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.85, C:0.03, G:0.10, T:0.03
Consensus pattern (15 bp):
AGAAAAAAAAATAAA
Found at i:95081357 original size:31 final size:32
Alignment explanation
Indices: 95081270--95081358 Score: 85
Period size: 31 Copynumber: 2.8 Consensus size: 32
95081260 TTTTGTGAGA
* * *
95081270 TTAATGAGAATTTTC-AAAATTTTAAGAGTGC
1 TTAATGAAAATTTTCAAAAAATTTAAAAGTGC
*
95081301 TTAATTAAAATTTTCAAAAAAAAATTTAAAAG-G-
1 TTAATGAAAATTTTC---AAAAAATTTAAAAGTGC
95081334 TATAATGAAAATTTTCAAAAAATTT
1 T-TAATGAAAATTTTCAAAAAATTT
95081359 GGGGGCTCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
31 22 0.46
33 1 0.02
34 14 0.29
35 11 0.23
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.37
Consensus pattern (32 bp):
TTAATGAAAATTTTCAAAAAATTTAAAAGTGC
Found at i:95081620 original size:62 final size:62
Alignment explanation
Indices: 95081504--95081622 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 62
95081494 GTATCATGAT
* * *
95081504 AAAACACATATTGATGGTTTAAGTACCACATTAAACATTTTCAAAATACATGTACCATAATA
1 AAAACACATATTGATAGTTCAAGTACCACATTAAACATTTTCAAAACACATGTACCATAATA
* * * *
95081566 AAAACACATATTGATAGTTCAAGTACCACATTATATATTTTCAAAGCACTTGTACCA
1 AAAACACATATTGATAGTTCAAGTACCACATTAAACATTTTCAAAACACATGTACCA
95081623 CTAGACATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (62 bp):
AAAACACATATTGATAGTTCAAGTACCACATTAAACATTTTCAAAACACATGTACCATAATA
Found at i:95082341 original size:61 final size:61
Alignment explanation
Indices: 95082219--95082334 Score: 151
Period size: 61 Copynumber: 1.9 Consensus size: 61
95082209 TTTTTTTTCC
* * * * *
95082219 TAGAATTAGAACTAAATTGATAATTTTTATAAATATTGAGGGCTAAATTTATTGAAGTTTT
1 TAGAATTAGAACTAAAATAATAAATTTTATAAACATTCAGGGCTAAATTTATTGAAGTTTT
* * * *
95082280 TAGAATTTGAACTAAAATAATAAATTTTGTAAACATTCAGGGTTAAATTTGTTGA
1 TAGAATTAGAACTAAAATAATAAATTTTATAAACATTCAGGGCTAAATTTATTGA
95082335 TTTTTTTTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.41
Consensus pattern (61 bp):
TAGAATTAGAACTAAAATAATAAATTTTATAAACATTCAGGGCTAAATTTATTGAAGTTTT
Found at i:95083557 original size:29 final size:29
Alignment explanation
Indices: 95083460--95083557 Score: 76
Period size: 29 Copynumber: 3.3 Consensus size: 29
95083450 AACCCATAAA
* **
95083460 TTGGTACCTAGACTATGTCATTTTTC-CCATT
1 TTGGTACCTAAACTAT-T--TTTTTCTCCAAG
*
95083491 TTGGTACCTAAA-TATTTTTTTTGTCACAAG
1 TTGGTACCTAAACTA-TTTTTTTCTC-CAAG
* *
95083521 -TAGAACCTAAACTATTTTTTTCTCCAAG
1 TTGGTACCTAAACTATTTTTTTCTCCAAG
95083549 TTGGTACCT
1 TTGGTACCT
95083558 CTGTTGTTAG
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
28 9 0.17
29 25 0.47
30 7 0.13
31 12 0.23
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.44
Consensus pattern (29 bp):
TTGGTACCTAAACTATTTTTTTCTCCAAG
Found at i:95089627 original size:2 final size:2
Alignment explanation
Indices: 95089620--95089654 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
95089610 ATTTTGTGCT
*
95089620 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95089655 GTCTCTGTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:95091817 original size:477 final size:478
Alignment explanation
Indices: 95090904--95092024 Score: 1569
Period size: 477 Copynumber: 2.3 Consensus size: 478
95090894 TATAGGGAAT
* *
95090904 CATGGCAGGAGATGATAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATAACAAACCAAGCTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
* *
95090969 TTCTAAATCATGATGAAAATCCGGGAATATCGGTTTCCGAGGATCACCAATCTCCTATCCAAATC
66 TACTAAATCACGATGAAAATCCGGGAATATCGGTTTCCGAGGATCACCAATCTCCTATCCAAATC
* * * *
95091034 AATAAGGTTCATTCAAGTTCGGAGTATACAACCATGGCAGGAGATGATAATCAAACAAAAGTTAA
131 AATAAGGTTCATTCAAGTTCAGAGTAAACAACCATGGCAGGAGATGACAATCAAACAAAAGTGAA
* *
95091099 CTTCCCTAATCTCTAGATGACAAACCAAACTATACTAAATCACGATGAAAATCCAGGAATATCTG
196 CTTCCCTAATCTCTAGATGACAAACCAAACTATACTAAATCAAGATGAAAATACAGGAATATCTG
* * *
95091164 AAGATCACCGTTCTCCCATCCAAACCACTAAGGTTCATTCAAGTTCAGAGTAAACAACAATGGCA
261 -AGATCACCGATCACCAATCCAAACCACTAAGGTTCATTCAAGTTCAGAGTAAACAACAATGGCA
* * *
95091229 AGAGATAACAATCAACCAAAAGTGAACTTCCTAGTCTCTAGAGGACAAACGAAGCTACACTAAAT
325 AGAGATAACAATCAAACAAAAGCGAACTTCCTAGTCTCTAGAGGACAAACCAAGCTACACTAAAT
* * *
95091294 CACGATGAGAAATCAGGAATATCTGTTCCCAAGGATCACCGATCTCCTATCCAAATTGA-AAGGT
390 CACGATGAGAAATCAGGAATATCTGTTCCCAAGGAACACCGATCTCCTATCAAAATCGATAAGGT
95091358 TCATTCAAGCTT-AGAGTAAACAAC
455 TCATTCAA-CTTCAGAGTAAACAAC
* *
95091382 CATGGCAGGATATGACAATCAAACAAAAGTGAATTTCCCTAGTCTCTAGATGACAAACCAAGCTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
* *
95091447 TACTAAATCACGAT-AAAATCTGGGAATATCGGTTTCCGAGGATCACCAATCTCCTATCAAAATC
66 TACTAAATCACGATGAAAATCCGGGAATATCGGTTTCCGAGGATCACCAATCTCCTATCCAAATC
* *
95091511 AATAAGGTTTATTCAAGTTCAGTGTAAACAACCATGGCAGGAGATGACAATCAAACAAAAGTGAA
131 AATAAGGTTCATTCAAGTTCAGAGTAAACAACCATGGCAGGAGATGACAATCAAACAAAAGTGAA
** * * * **
95091576 CTTCCCTGGTCTCTAGATGATAAACCAAGCTATACTAACTCAAGATGAAAATATGGGAATAT-TG
196 CTTCCCTAATCTCTAGATGACAAACCAAACTATACTAAATCAAGATGAAAATACAGGAATATCTG
* * * *
95091640 -GTTTCTGA-GGATCACCAATCCAAATCGA-TAAGGTTCATTCAAGTTCAGAGTAAACAACCATG
261 AG-ATC--ACCGATCACCAATCCAAA-CCACTAAGGTTCATTCAAGTTCAGAGTAAACAACAATG
* * * * * *
95091702 GCAGGAGATCACAATCAAACAAAAGCGGACTTCCTTAGTCTCTAGATGATAAACCAAGCTATACT
322 GCAAGAGATAACAATCAAACAAAAGCGAACTTCC-TAGTCTCTAGAGGACAAACCAAGCTACACT
* * *
95091767 AAATCACGATGA-AAATCCAGGAATAT-TGGTTTCCGAGGAACACTGATCTCCTATCAAAATCGA
386 AAATCACGATGAGAAAT-CAGGAATATCT-GTTCCCAAGGAACACCGATCTCCTATCAAAATCGA
*
95091830 TAAGGTTCATTCAACTTCAGAGTAAACGAC
449 TAAGGTTCATTCAACTTCAGAGTAAACAAC
* * * * *
95091860 AATGGGAGGAGATGACAATCAAACAAAAGTGAACTTCCTTAGTCTCGAGATGAAAAACCAAGCTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
* * * * *
95091925 TACTAAATCACGATGAAAATCCGAGAACATCGGTTTCCGAGGAACACCGATCTCCTAACCAAAT-
66 TACTAAATCACGATGAAAATCCGGGAATATCGGTTTCCGAGGATCACCAATCTCCTATCCAAATC
*
95091989 AGATAAGGTTCATTCCAGTTCAGAGTAAACAACCAT
131 A-ATAAGGTTCATTCAAGTTCAGAGTAAACAACCAT
95092025 AGCACAAAAA
Statistics
Matches: 569, Mismatches: 63, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
474 1 0.00
475 2 0.00
476 81 0.14
477 242 0.43
478 170 0.30
479 73 0.13
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (478 bp):
CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
TACTAAATCACGATGAAAATCCGGGAATATCGGTTTCCGAGGATCACCAATCTCCTATCCAAATC
AATAAGGTTCATTCAAGTTCAGAGTAAACAACCATGGCAGGAGATGACAATCAAACAAAAGTGAA
CTTCCCTAATCTCTAGATGACAAACCAAACTATACTAAATCAAGATGAAAATACAGGAATATCTG
AGATCACCGATCACCAATCCAAACCACTAAGGTTCATTCAAGTTCAGAGTAAACAACAATGGCAA
GAGATAACAATCAAACAAAAGCGAACTTCCTAGTCTCTAGAGGACAAACCAAGCTACACTAAATC
ACGATGAGAAATCAGGAATATCTGTTCCCAAGGAACACCGATCTCCTATCAAAATCGATAAGGTT
CATTCAACTTCAGAGTAAACAAC
Found at i:95091898 original size:162 final size:162
Alignment explanation
Indices: 95090904--95092024 Score: 1463
Period size: 162 Copynumber: 7.0 Consensus size: 162
95090894 TATAGGGAAT
* *
95090904 CATGGCAGGAGATGATAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATAACAAACCAAGCTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
* * * *
95090969 TTCTAAATCATGATGAAAATCCGGGAATATCGGTTTCCGAGGATCACCAATCTCCTATCCAAATC
66 TACTAAATCACGATGAAAATCCAGGAATATCGGTTTCCGAGGATCACCGATCTCCTATCCAAATC
* * *
95091034 AATAAGGTTCATTCAAGTTCGGAGTATACAAC
131 GATAAGGTTCATTCAAGTTCAGAGTAAACAAC
* * * *
95091066 CATGGCAGGAGATGATAATCAAACAAAAGTTAACTTCCCTAATCTCTAGATGACAAACCAAACTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
* * *
95091131 TACTAAATCACGATGAAAATCCAGGAATATC----T--GAAGATCACCGTTCTCCCATCCAAA-C
66 TACTAAATCACGATGAAAATCCAGGAATATCGGTTTCCGAGGATCACCGATCTCCTATCCAAATC
*
95091189 CACTAAGGTTCATTCAAGTTCAGAGTAAACAAC
131 GA-TAAGGTTCATTCAAGTTCAGAGTAAACAAC
* * * * * *
95091222 AATGGCAAGAGATAACAATCAACCAAAAGTGAACTT-CCTAGTCTCTAGAGGACAAACGAAGCTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
* * * *
95091286 CACTAAATCACGATGAGAAAT-CAGGAATATCTGTTCCCAAGGATCACCGATCTCCTATCCAAAT
66 TACTAAATCACGATGA-AAATCCAGGAATATCGGTTTCCGAGGATCACCGATCTCCTATCCAAAT
*
95091350 TGA-AAGGTTCATTCAAGCTT-AGAGTAAACAAC
130 CGATAAGGTTCATTCAAG-TTCAGAGTAAACAAC
* *
95091382 CATGGCAGGATATGACAATCAAACAAAAGTGAATTTCCCTAGTCTCTAGATGACAAACCAAGCTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
** * *
95091447 TACTAAATCACGAT-AAAATCTGGGAATATCGGTTTCCGAGGATCACCAATCTCCTATCAAAATC
66 TACTAAATCACGATGAAAATCCAGGAATATCGGTTTCCGAGGATCACCGATCTCCTATCCAAATC
* * *
95091511 AATAAGGTTTATTCAAGTTCAGTGTAAACAAC
131 GATAAGGTTCATTCAAGTTCAGAGTAAACAAC
* *
95091543 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTGGTCTCTAGATGATAAACCAAGCTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
* * *** * *
95091608 TACTAACTCAAGATGAAAATATGGGAATATTGGTTTCTGAGGATCACC-A------ATCCAAATC
66 TACTAAATCACGATGAAAATCCAGGAATATCGGTTTCCGAGGATCACCGATCTCCTATCCAAATC
95091666 GATAAGGTTCATTCAAGTTCAGAGTAAACAAC
131 GATAAGGTTCATTCAAGTTCAGAGTAAACAAC
* * * * *
95091698 CATGGCAGGAGATCACAATCAAACAAAAGCGGACTTCCTTAGTCTCTAGATGATAAACCAAGCTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
* * * *
95091763 TACTAAATCACGATGAAAATCCAGGAATATTGGTTTCCGAGGAACACTGATCTCCTATCAAAATC
66 TACTAAATCACGATGAAAATCCAGGAATATCGGTTTCCGAGGATCACCGATCTCCTATCCAAATC
* *
95091828 GATAAGGTTCATTCAACTTCAGAGTAAACGAC
131 GATAAGGTTCATTCAAGTTCAGAGTAAACAAC
* * * * *
95091860 AATGGGAGGAGATGACAATCAAACAAAAGTGAACTTCCTTAGTCTCGAGATGAAAAACCAAGCTA
1 CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
* * *
95091925 TACTAAATCACGATGAAAATCC-GAGAACATCGGTTTCCGAGGAACACCGATCTCCTAACCAAAT
66 TACTAAATCACGATGAAAATCCAG-GAATATCGGTTTCCGAGGATCACCGATCTCCTATCCAAAT
* *
95091989 AGATAAGGTTCATTCCAGTTCAGAGTAAACAAC
130 CGATAAGGTTCATTCAAGTTCAGAGTAAACAAC
95092022 CAT
1 CAT
95092025 AGCACAAAAA
Statistics
Matches: 838, Mismatches: 98, Indels: 46
0.85 0.10 0.05
Matches are distributed among these distances:
155 188 0.22
156 84 0.10
158 1 0.00
159 4 0.00
160 96 0.11
161 161 0.19
162 304 0.36
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (162 bp):
CATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGACAAACCAAGCTA
TACTAAATCACGATGAAAATCCAGGAATATCGGTTTCCGAGGATCACCGATCTCCTATCCAAATC
GATAAGGTTCATTCAAGTTCAGAGTAAACAAC
Found at i:95091928 original size:317 final size:318
Alignment explanation
Indices: 95090905--95092024 Score: 1375
Period size: 317 Copynumber: 3.5 Consensus size: 318
95090895 ATAGGGAATC
*
95090905 ATGGCAGGAGATGATAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGAT-AACAAACCAAGCTA
1 ATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGAA-AAACCAAGCTA
* * * *
95090969 TTCTAAATCATGATGAAAATCCGGGAATATCGGTTTCCGAGGATCACCAATCTCCTATCCAAATC
65 TACTAAATCACGATGAAAATACGGGAATATCGGTTTCCGAGGATCACCGA----C-ATCCAAATC
* * * * *
95091034 AATAAGGTTCATTCAAGTTCGGAGTATACAACCATGGCAGGAGATGATAATCAAACAAAAGTTAA
125 GATAAGGTTCATTCAAGTTCAGAGTAAACAACCATGGCAGGAGATGACAATCAAACAAAAGTGAA
* *
95091099 CTTCCCTAATCTCTAGATGACAAACCAAACTATACTAAATCACGATGAAAATCCAGGAATA----
190 CTTCCCTAGTCTCTAGATGACAAACCAAGCTATACTAAATCACGATGAAAATCCAGGAATATGGT
* * * * * * *
95091160 -TCTGAAGATCACCGTTCTCCCATCCAAACCACTAAGGTTCATTCAAGTTCAGAGTAAACAACA
255 TTCCGAGGATCACCGATCTCCTATCAAAATCAATAAGGTTCATTCAAGTTCAGAGTAAACAACA
* * * * * * *
95091223 ATGGCAAGAGATAACAATCAACCAAAAGTGAACTT-CCTAGTCTCTAGAGGACAAACGAAGCTAC
1 ATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGAAAAACCAAGCTAT
* * * * *
95091287 ACTAAATCACGATGAGAAAT-CAGGAATATCTGTTCCCAAGGATCACCGATCTCCTATCCAAATT
66 ACTAAATCACGATGA-AAATACGGGAATATCGGTTTCCGAGGATCACCGA----C-ATCCAAATC
*
95091351 GA-AAGGTTCATTCAAGCTT-AGAGTAAACAACCATGGCAGGATATGACAATCAAACAAAAGTGA
125 GATAAGGTTCATTCAAG-TTCAGAGTAAACAACCATGGCAGGAGATGACAATCAAACAAAAGTGA
* **
95091414 ATTTCCCTAGTCTCTAGATGACAAACCAAGCTATACTAAATCACGAT-AAAATCTGGGAATATCG
189 ACTTCCCTAGTCTCTAGATGACAAACCAAGCTATACTAAATCACGATGAAAATCCAGGAATAT-G
* * *
95091478 GTTTCCGAGGATCACCAATCTCCTATCAAAATCAATAAGGTTTATTCAAGTTCAGTGTAAACAAC
253 GTTTCCGAGGATCACCGATCTCCTATCAAAATCAATAAGGTTCATTCAAGTTCAGAGTAAACAAC
*
95091543 C
318 A
* *
95091544 ATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTGGTCTCTAGATGATAAACCAAGCTAT
1 ATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGAAAAACCAAGCTAT
* * * * *
95091609 ACTAACTCAAGATGAAAATATGGGAATATTGGTTTCTGAGGATCACC-A-ATCCAAATCGATAAG
66 ACTAAATCACGATGAAAATACGGGAATATCGGTTTCCGAGGATCACCGACATCCAAATCGATAAG
* * * *
95091672 GTTCATTCAAGTTCAGAGTAAACAACCATGGCAGGAGATCACAATCAAACAAAAGCGGACTTCCT
131 GTTCATTCAAGTTCAGAGTAAACAACCATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCC
*
95091737 TAGTCTCTAGATGATAAACCAAGCTATACTAAATCACGATGAAAATCCAGGAATATTGGTTTCCG
196 TAGTCTCTAGATGACAAACCAAGCTATACTAAATCACGATGAAAATCCAGGAATA-TGGTTTCCG
* * * * *
95091802 AGGAACACTGATCTCCTATCAAAATCGATAAGGTTCATTCAACTTCAGAGTAAACGACA
260 AGGATCACCGATCTCCTATCAAAATCAATAAGGTTCATTCAAGTTCAGAGTAAACAACA
* * *
95091861 ATGGGAGGAGATGACAATCAAACAAAAGTGAACTTCCTTAGTCTCGAGATGAAAAACCAAGCTAT
1 ATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGAAAAACCAAGCTAT
* * * * * *
95091926 ACTAAATCACGATGAAAATCCGAGAACATCGGTTTCCGAGGAACACCGATCTCCTAACCAAATAG
66 ACTAAATCACGATGAAAATACGGGAATATCGGTTTCCGAGGATCACCGA----C-ATCCAAATCG
*
95091991 ATAAGGTTCATTCCAGTTCAGAGTAAACAACCAT
126 ATAAGGTTCATTCAAGTTCAGAGTAAACAACCAT
95092025 AGCACAAAAA
Statistics
Matches: 689, Mismatches: 91, Indels: 38
0.84 0.11 0.05
Matches are distributed among these distances:
315 24 0.03
316 195 0.28
317 245 0.36
318 38 0.06
321 89 0.13
322 57 0.08
324 41 0.06
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (318 bp):
ATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCCTAGTCTCTAGATGAAAAACCAAGCTAT
ACTAAATCACGATGAAAATACGGGAATATCGGTTTCCGAGGATCACCGACATCCAAATCGATAAG
GTTCATTCAAGTTCAGAGTAAACAACCATGGCAGGAGATGACAATCAAACAAAAGTGAACTTCCC
TAGTCTCTAGATGACAAACCAAGCTATACTAAATCACGATGAAAATCCAGGAATATGGTTTCCGA
GGATCACCGATCTCCTATCAAAATCAATAAGGTTCATTCAAGTTCAGAGTAAACAACA
Found at i:95092668 original size:25 final size:25
Alignment explanation
Indices: 95092621--95092671 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
95092611 ACAAACATTT
*
95092621 AATTAAATAATTAATTTAATAACTA
1 AATTAAATAATTAATGTAATAACTA
*
95092646 AATTGAATAATTAA-GTAACTAACTA
1 AATTAAATAATTAATGTAA-TAACTA
95092671 A
1 A
95092672 CTATAACTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.35
Consensus pattern (25 bp):
AATTAAATAATTAATGTAATAACTA
Found at i:95097123 original size:2 final size:2
Alignment explanation
Indices: 95097116--95097140 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95097106 TTGTTATGTT
95097116 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
95097141 TTAATAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:95102599 original size:63 final size:63
Alignment explanation
Indices: 95102521--95102639 Score: 229
Period size: 63 Copynumber: 1.9 Consensus size: 63
95102511 AGCTGACTGG
95102521 GGAGGATTGTAAGGAGTCTCAGAACCTTGATAGGATGATGGATAGTGAGACGGGGCCGATTGT
1 GGAGGATTGTAAGGAGTCTCAGAACCTTGATAGGATGATGGATAGTGAGACGGGGCCGATTGT
*
95102584 GGAGGATTGTAAGGAGTCTCGGAACCTTGATAGGATGATGGATAGTGAGACGGGGC
1 GGAGGATTGTAAGGAGTCTCAGAACCTTGATAGGATGATGGATAGTGAGACGGGGC
95102640 TGTAGGTAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.27, C:0.11, G:0.39, T:0.23
Consensus pattern (63 bp):
GGAGGATTGTAAGGAGTCTCAGAACCTTGATAGGATGATGGATAGTGAGACGGGGCCGATTGT
Found at i:95104166 original size:22 final size:22
Alignment explanation
Indices: 95104138--95104190 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
95104128 CTTAAAGTTC
*
95104138 CCTAAACTATGA-CCCTGAGATT
1 CCTAAACTATGAGCCC-AAGATT
*
95104160 CCTAAACTATGAGCCCAAGTTT
1 CCTAAACTATGAGCCCAAGATT
95104182 CCTAAACTA
1 CCTAAACTA
95104191 CAAGCCTCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 25 0.89
23 3 0.11
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.26
Consensus pattern (22 bp):
CCTAAACTATGAGCCCAAGATT
Found at i:95107049 original size:21 final size:22
Alignment explanation
Indices: 95107010--95107050 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
95107000 TAGAAAAAAT
**
95107010 AAAAATATATATATCAAATTTC
1 AAAAATATATATAAAAAATTTC
95107032 AAAAA-ATATATAAAAAATT
1 AAAAATATATATAAAAAATT
95107051 CATAAAGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (22 bp):
AAAAATATATATAAAAAATTTC
Found at i:95120204 original size:16 final size:16
Alignment explanation
Indices: 95120179--95120213 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
95120169 GTTTAAATTC
*
95120179 TTTGAGTCATTACAAG
1 TTTGAATCATTACAAG
*
95120195 TTTGAATCATTCCAAG
1 TTTGAATCATTACAAG
95120211 TTT
1 TTT
95120214 AAAGTATTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (16 bp):
TTTGAATCATTACAAG
Found at i:95120309 original size:30 final size:31
Alignment explanation
Indices: 95120268--95120326 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
95120258 ACAAGACAGG
*
95120268 TCATTTCGAGTTTGAGTCATTT-TAAATAGA
1 TCATTTCGAGTTTGAATCATTTATAAATAGA
*
95120298 TCATTTTGAGTTTGAATCATTTATAAATA
1 TCATTTCGAGTTTGAATCATTTATAAATA
95120327 AGTTGGGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (31 bp):
TCATTTCGAGTTTGAATCATTTATAAATAGA
Found at i:95131718 original size:22 final size:23
Alignment explanation
Indices: 95131680--95131722 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
95131670 ATAATTATTA
95131680 AATTTATACATCAAAATTTGTCT
1 AATTTATACATCAAAATTTGTCT
95131703 AATTTA-ACA-CATAAATTTGT
1 AATTTATACATCA-AAATTTGT
95131723 TTTATTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 2 0.11
22 11 0.58
23 6 0.32
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.42
Consensus pattern (23 bp):
AATTTATACATCAAAATTTGTCT
Found at i:95132588 original size:3 final size:3
Alignment explanation
Indices: 95132582--95132616 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
95132572 CTAATAACAA
95132582 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
95132617 AAAACAATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:95135372 original size:2 final size:2
Alignment explanation
Indices: 95135365--95135389 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95135355 TGAAGATGAA
95135365 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
95135390 TCAGAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:95135988 original size:27 final size:25
Alignment explanation
Indices: 95135936--95135994 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
95135926 GTCAATAAAT
**
95135936 TTAAAATTATTTTAACTAATTTAAA
1 TTAAAATTATTTTAACTAATAAAAA
95135961 TATAAATATTATTTTATA-TAATAAAAA
1 T-TAAA-ATTATTTTA-ACTAATAAAAA
95135988 TTAAAAT
1 TTAAAAT
95135995 AAATTATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
25 3 0.10
26 8 0.28
27 17 0.59
28 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TTAAAATTATTTTAACTAATAAAAA
Found at i:95141120 original size:42 final size:42
Alignment explanation
Indices: 95141059--95141170 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 42
95141049 CTTCGTTTTC
** *
95141059 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
*
95141102 T-GATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
* * *
95141143 TCAATGCAATAGCCCAGCTATGGTCTTA
1 TCGATGCCATAGCCCAACTATGGTCTTA
95141171 AACGAATCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 2 0.03
42 58 0.95
43 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:95141327 original size:31 final size:31
Alignment explanation
Indices: 95141292--95141471 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
95141282 CTTGTCACTT
*
95141292 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
95141323 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
95141354 GTAGCCGGAGCTACCACTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95141385 GTAGCCGGAA-CTACCACTTTTAACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
95141416 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95141447 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
95141472 TGTCATTTGT
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 3 0.02
31 131 0.96
32 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:95141558 original size:50 final size:51
Alignment explanation
Indices: 95141447--95141575 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
95141437 CACTGATCAG
* * *
95141447 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCTGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
* *
95141498 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAAATAAGT
1 GTAGCTGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAAATAAGT
95141548 GTAGCTGAAGCTATCACTTATCACTTGT
1 GTAGCTGAAGCTATCACTTATCACTTGT
95141576 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCTGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
Found at i:95142059 original size:10 final size:10
Alignment explanation
Indices: 95142032--95142066 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
95142022 CCGCTAAAGG
95142032 TTATAAAAT-
1 TTATAAAATA
95142041 TTA-AAAATA
1 TTATAAAATA
95142050 TTATAAAATA
1 TTATAAAATA
95142060 TTATAAA
1 TTATAAA
95142067 GGTCATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 5 0.21
9 6 0.25
10 13 0.54
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
TTATAAAATA
Found at i:95149092 original size:21 final size:21
Alignment explanation
Indices: 95149068--95149126 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
95149058 CTTAACCCTT
* *
95149068 AACCCCTAAGCCTTAAACCCC
1 AACCCCTAAACCATAAACCCC
* **
95149089 AACCCTTAAACCATAAACCAT
1 AACCCCTAAACCATAAACCCC
*
95149110 AATCCCTAAACCCATAA
1 AACCCCTAAA-CCATAA
95149127 TCCATAAACC
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 24 0.80
22 6 0.20
ACGTcount: A:0.42, C:0.39, G:0.02, T:0.17
Consensus pattern (21 bp):
AACCCCTAAACCATAAACCCC
Found at i:95149098 original size:14 final size:15
Alignment explanation
Indices: 95149060--95149100 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
95149050 ACCTAACACT
95149060 TAACCCTT-AACCCC
1 TAACCCTTAAACCCC
*
95149074 TAAGCCTTAAACCCC
1 TAACCCTTAAACCCC
95149089 -AACCCTTAAACC
1 TAACCCTTAAACC
95149101 ATAAACCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.34, C:0.44, G:0.02, T:0.20
Consensus pattern (15 bp):
TAACCCTTAAACCCC
Found at i:95149141 original size:22 final size:21
Alignment explanation
Indices: 95149092--95149141 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
95149082 AAACCCCAAC
*
95149092 CCTTAAACCATAAACCATAAT
1 CCTTAAACCATAAACCATAAA
* *
95149113 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAAACCATAAA
95149135 CCTTAAA
1 CCTTAAA
95149142 ATAATAACTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:95149416 original size:25 final size:25
Alignment explanation
Indices: 95149388--95149435 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
95149378 AACACTTAAA
95149388 CCTTAAACCACAA-CCCTTAAACCAC
1 CCTTAAACCACAATCCC-TAAACCAC
*
95149413 CCTTAAACCATAATCCCTAAACC
1 CCTTAAACCACAATCCCTAAACC
95149436 CATAATCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (25 bp):
CCTTAAACCACAATCCCTAAACCAC
Found at i:95149438 original size:15 final size:15
Alignment explanation
Indices: 95149416--95149450 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
95149406 AAACCACCCT
*
95149416 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
95149430 TAAACCCATAATCCA
1 TAAACCCATAATCCA
95149445 TAAACC
1 TAAACC
95149451 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:95149455 original size:22 final size:21
Alignment explanation
Indices: 95149418--95149489 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 21
95149408 ACCACCCTTA
* *
95149418 AACCATAATCCCTAAACCCAT
1 AACCATAAACCTTAAACCCAT
***
95149439 AATCCATAAACCTTAAAATAAT
1 AA-CCATAAACCTTAAACCCAT
* *
95149461 AACTCATAAACATTAAACCCTT
1 AAC-CATAAACCTTAAACCCAT
95149483 AACCATA
1 AACCATA
95149490 TACTATAAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
21 7 0.18
22 32 0.82
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.24
Consensus pattern (21 bp):
AACCATAAACCTTAAACCCAT
Found at i:95149939 original size:40 final size:39
Alignment explanation
Indices: 95149850--95149980 Score: 120
Period size: 40 Copynumber: 3.3 Consensus size: 39
95149840 TAAATTTTTT
* *
95149850 GCGGCATTTTTTATAAAGCGCCGCTAAAGATCGAGCATTA
1 GCGGCGTTTTTTA-AAAGCGCCGCTAAAGATCGAACATTA
* * *
95149890 GCGGTGTTTTTTGGAAAGCGCCGCTAAAGAT-GAACCTATA
1 GCGGCGTTTTTT-AAAAGCGCCGCTAAAGATCGAACAT-TA
* * * * *
95149930 GTGGCGTTTTTTAATAAGCGCCGCTAATGCTCGATCTTTA
1 GCGGCGTTTTTTAA-AAGCGCCGCTAAAGATCGAACATTA
*
95149970 GCAGCGTTTTT
1 GCGGCGTTTTT
95149981 CATTCAAACG
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.07
40 64 0.88
41 4 0.05
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (39 bp):
GCGGCGTTTTTTAAAAGCGCCGCTAAAGATCGAACATTA
Found at i:95154857 original size:20 final size:21
Alignment explanation
Indices: 95154826--95154864 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
95154816 AGGCCTGCCC
95154826 ATATTATATTTTAAAATTTTT
1 ATATTATATTTTAAAATTTTT
*
95154847 ATATT-TATTTTAATATTT
1 ATATTATATTTTAAAATTT
95154865 ACATTAGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
ATATTATATTTTAAAATTTTT
Found at i:95157173 original size:22 final size:22
Alignment explanation
Indices: 95157148--95157194 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
95157138 GCCGTATGTA
*
95157148 GTGCTAATCAGTCTATTTGAGT
1 GTGCTAATCAGTCTATTTAAGT
95157170 GTGCTAATCAGTCTATTTAAGT
1 GTGCTAATCAGTCTATTTAAGT
95157192 GTG
1 GTG
95157195 TAGGATGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.40
Consensus pattern (22 bp):
GTGCTAATCAGTCTATTTAAGT
Found at i:95161297 original size:23 final size:23
Alignment explanation
Indices: 95161270--95161321 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
95161260 ATTGTTTGCA
*
95161270 AACATGTTCATTATA-TATTCATG
1 AACATGTTCATT-TAGCATTCATG
*
95161293 AACATGTTCGTTTAGCATTCATG
1 AACATGTTCATTTAGCATTCATG
95161316 AACATG
1 AACATG
95161322 ATCGTTTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 2 0.08
23 24 0.92
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (23 bp):
AACATGTTCATTTAGCATTCATG
Found at i:95161326 original size:23 final size:23
Alignment explanation
Indices: 95161286--95161329 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
95161276 TTCATTATAT
*
95161286 ATTCATGAACATGTTCGTTTAGC
1 ATTCATGAACATGATCGTTTAGC
95161309 ATTCATGAACATGATCGTTTA
1 ATTCATGAACATGATCGTTTA
95161330 ACTTAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (23 bp):
ATTCATGAACATGATCGTTTAGC
Found at i:95162179 original size:22 final size:21
Alignment explanation
Indices: 95162154--95162206 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
95162144 TTTTGAATAG
95162154 TTTAATAACTTAAATAAAAAAT
1 TTTAATAACTTAAAT-AAAAAT
* *
95162176 TTTAAATAA-TTAAATGACAAT
1 TTT-AATAACTTAAATAAAAAT
95162197 TTT-ATAACTT
1 TTTAATAACTT
95162207 TTTAAAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 4 0.15
20 2 0.07
21 7 0.26
22 9 0.33
23 5 0.19
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.42
Consensus pattern (21 bp):
TTTAATAACTTAAATAAAAAT
Found at i:95162579 original size:3 final size:3
Alignment explanation
Indices: 95162571--95162596 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
95162561 GCTTTTTTGT
95162571 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
95162597 TATGTGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:95163797 original size:126 final size:126
Alignment explanation
Indices: 95163572--95163840 Score: 373
Period size: 126 Copynumber: 2.1 Consensus size: 126
95163562 GGCCAAACAT
*
95163572 GAACTACTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTTTTCATCAATTTTGATGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGCGGAAGCTTTTTTCATCAATTTTGATGACAGTGCATC
** * * *
95163637 CTGCTTCAAGTGTTTTTGACACTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAG
66 CTGCTTCAAGCATTTTTGACACTATCTTTTCAGAACCGTCTTCTCAAAATTAATTTTTCAG
* *
95163698 GAACTACTGTAGAAAAAGAGTGTCTACGCCGG-AGCTTTTTTCAGT-AATTTT-ACTGACAGTGC
1 GAACTACTGTAGAAAAAGAGCGTCCACG-CGGAAGCTTTTTTCA-TCAATTTTGA-TGACAGTGC
* * *
95163760 ATCCTGCTTGAAGCATTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTAATTTTTCTG
63 ATCCTGCTTCAAGCATTTTTGACACTATCTTTTCAGAACCGTCTTCTCAAAATTAATTTTTCAG
* *
95163824 AAACTACTGTAAAAAAA
1 GAACTACTGTAGAAAAA
95163841 AACAAAATCC
Statistics
Matches: 127, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
125 1 0.01
126 123 0.97
127 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGCGGAAGCTTTTTTCATCAATTTTGATGACAGTGCATC
CTGCTTCAAGCATTTTTGACACTATCTTTTCAGAACCGTCTTCTCAAAATTAATTTTTCAG
Found at i:95166814 original size:16 final size:16
Alignment explanation
Indices: 95166793--95166824 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
95166783 TATATTATTC
95166793 ATTGAATCTTTAGTTG
1 ATTGAATCTTTAGTTG
95166809 ATTGAATCTTTAGTTG
1 ATTGAATCTTTAGTTG
95166825 GAGTTCGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (16 bp):
ATTGAATCTTTAGTTG
Done.