Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 328 of 335
Found at i:96379331 original size:5 final size:5
Alignment explanation
Indices: 96379321--96379346 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
96379311 GTGTGTGGAA
96379321 AGAAG AGAAG AGAAG AGAAG AGAAG A
1 AGAAG AGAAG AGAAG AGAAG AGAAG A
96379347 AGAAAGAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:96390894 original size:13 final size:13
Alignment explanation
Indices: 96390878--96390902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96390868 ACTTATTTCC
96390878 TTTTTGAATTTTA
1 TTTTTGAATTTTA
96390891 TTTTTGAATTTT
1 TTTTTGAATTTT
96390903 TAATATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (13 bp):
TTTTTGAATTTTA
Found at i:96394095 original size:19 final size:18
Alignment explanation
Indices: 96394067--96394102 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
96394057 TTAATAAAAC
96394067 TATTTAAATTTTAATTTAT
1 TATTTAAA-TTTAATTTAT
*
96394086 TATTTTAATTTAATTTA
1 TATTTAAATTTAATTTA
96394103 AATTGTAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TATTTAAATTTAATTTAT
Found at i:96394139 original size:16 final size:18
Alignment explanation
Indices: 96394110--96394142 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
96394100 TTAAATTGTA
96394110 AACAATATTAATTATATG
1 AACAATATTAATTATATG
96394128 AACAAT-TT-ATTATAT
1 AACAATATTAATTATAT
96394143 ATAATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (18 bp):
AACAATATTAATTATATG
Found at i:96404066 original size:34 final size:34
Alignment explanation
Indices: 96404024--96404093 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
96404014 TGAATTATCA
96404024 AAAGATAAACTTATAATTTAGTCACCTTCAACGT
1 AAAGATAAACTTATAATTTAGTCACCTTCAACGT
96404058 AAAGATAAACTTATAATTTAGTCACCTTCAACGT
1 AAAGATAAACTTATAATTTAGTCACCTTCAACGT
96404092 AA
1 AA
96404094 TTTACTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (34 bp):
AAAGATAAACTTATAATTTAGTCACCTTCAACGT
Found at i:96424913 original size:6 final size:6
Alignment explanation
Indices: 96424902--96424929 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
96424892 AATATTTTAT
96424902 ATATAG ATATAG ATATAG ATATAG ATAT
1 ATATAG ATATAG ATATAG ATATAG ATAT
96424930 CTGACAACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (6 bp):
ATATAG
Found at i:96425069 original size:2 final size:2
Alignment explanation
Indices: 96425062--96425091 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
96425052 AGAAGATTGA
96425062 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96425092 GGTGTTTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96430440 original size:22 final size:22
Alignment explanation
Indices: 96430412--96430456 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
96430402 TCGCACTCTC
96430412 GCTAGGTGTTGTTTCAGTGTAA
1 GCTAGGTGTTGTTTCAGTGTAA
96430434 GCTAGGTGTTGTTTCAGTGTAA
1 GCTAGGTGTTGTTTCAGTGTAA
96430456 G
1 G
96430457 ACTGATCGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.09, G:0.33, T:0.40
Consensus pattern (22 bp):
GCTAGGTGTTGTTTCAGTGTAA
Found at i:96434383 original size:2 final size:2
Alignment explanation
Indices: 96434339--96434365 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
96434329 CATGAAAATG
96434339 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
96434366 TAAGATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96436207 original size:40 final size:40
Alignment explanation
Indices: 96436152--96436233 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
96436142 TTTGATCCTC
96436152 CCCGATTTGATCAAAAACTCGAAAATTGTGCCTTAAATTA
1 CCCGATTTGATCAAAAACTCGAAAATTGTGCCTTAAATTA
96436192 CCCGATTTGATCAAAAACTCGAAAATTGTGCCTTAAATTA
1 CCCGATTTGATCAAAAACTCGAAAATTGTGCCTTAAATTA
96436232 CC
1 CC
96436234 TTTGAATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (40 bp):
CCCGATTTGATCAAAAACTCGAAAATTGTGCCTTAAATTA
Found at i:96437709 original size:19 final size:19
Alignment explanation
Indices: 96437687--96437725 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
96437677 AATTTAGGTA
96437687 TTTTAAGTTTTTTTAGAAT
1 TTTTAAGTTTTTTTAGAAT
* *
96437706 TTTTAATTTTTTTTATAAT
1 TTTTAAGTTTTTTTAGAAT
96437725 T
1 T
96437726 ATAATGTGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (19 bp):
TTTTAAGTTTTTTTAGAAT
Found at i:96439373 original size:18 final size:18
Alignment explanation
Indices: 96439350--96439392 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
96439340 GTTCAAGGTG
96439350 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
96439368 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
96439386 TAATTAA
1 TAATTAA
96439393 AAACCTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:96445013 original size:32 final size:32
Alignment explanation
Indices: 96444977--96445037 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
96444967 TAAAATGTTA
96444977 GAAAAATTCTAACAAGCTCAACATTTAATATT
1 GAAAAATTCTAACAAGCTCAACATTTAATATT
*
96445009 GAAAATTTCTAACAAGCTCAACATTTAAT
1 GAAAAATTCTAACAAGCTCAACATTTAAT
96445038 GTATATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.31
Consensus pattern (32 bp):
GAAAAATTCTAACAAGCTCAACATTTAATATT
Found at i:96446481 original size:70 final size:71
Alignment explanation
Indices: 96446361--96446496 Score: 256
Period size: 70 Copynumber: 1.9 Consensus size: 71
96446351 ATCAAATGTC
96446361 AATAACGTTAATGATTAAAATAAATTTTTTTAAATCAGGGTGACCAAAACAAAAACACGCTAATA
1 AATAACGTTAATGATTAAAATAAATTTTTTTAAATCAGGGTGACCAAAACAAAAACACGCTAATA
96446426 ATTGTT
66 ATTGTT
*
96446432 AATAACGTTAATGATTAAAAT-AATTTTTTTAAATCAGGGTGACCAAAACAGAAACACGCTAATA
1 AATAACGTTAATGATTAAAATAAATTTTTTTAAATCAGGGTGACCAAAACAAAAACACGCTAATA
96446496 A
66 A
96446497 CTGGGTGACT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
70 43 0.67
71 21 0.33
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (71 bp):
AATAACGTTAATGATTAAAATAAATTTTTTTAAATCAGGGTGACCAAAACAAAAACACGCTAATA
ATTGTT
Found at i:96449677 original size:15 final size:15
Alignment explanation
Indices: 96449624--96449670 Score: 71
Period size: 14 Copynumber: 3.3 Consensus size: 15
96449614 AAGTTATGGA
96449624 TTTAATCTTTATA-T
1 TTTAATCTTTATATT
*
96449638 TTTAAT-TTGATATT
1 TTTAATCTTTATATT
96449652 TTTAATCTTTATATT
1 TTTAATCTTTATATT
96449667 TTTA
1 TTTA
96449671 TTTTTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 5 0.17
14 13 0.45
15 11 0.38
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (15 bp):
TTTAATCTTTATATT
Found at i:96449684 original size:28 final size:28
Alignment explanation
Indices: 96449625--96449685 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
96449615 AGTTATGGAT
***
96449625 TTAATCTTTATATTTTAATTTGATATTT
1 TTAATCTTTATATTTTAATTTGATAAAA
* **
96449653 TTAATCTTTATATTTTTATTTTTTAAAA
1 TTAATCTTTATATTTTAATTTGATAAAA
96449681 TTAAT
1 TTAAT
96449686 TAAATAAATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (28 bp):
TTAATCTTTATATTTTAATTTGATAAAA
Found at i:96449899 original size:33 final size:33
Alignment explanation
Indices: 96449862--96449926 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
96449852 TAGCCTTAAT
*
96449862 AAAATATT-TCTCTAATATTTAAAATATAAGAAC
1 AAAATATTAT-TCTAATATTAAAAATATAAGAAC
*
96449895 AAAATATTATTTTAATATTAAAAATATAAGAA
1 AAAATATTATTCTAATATTAAAAATATAAGAA
96449927 TAATTATCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (33 bp):
AAAATATTATTCTAATATTAAAAATATAAGAAC
Found at i:96450560 original size:26 final size:26
Alignment explanation
Indices: 96450522--96450608 Score: 79
Period size: 26 Copynumber: 3.3 Consensus size: 26
96450512 TTTTTTTAAG
*
96450522 CCTAAAGCCTAAACCCAGAA-TCCGAAC
1 CCTAAACCCTAAACCCA-AACT-CGAAC
*
96450549 CCTAAA-CCTAAACCTAAACTCGAAC
1 CCTAAACCCTAAACCCAAACTCGAAC
* * *
96450574 CTTAAACCCTAAACTCTAAACCTTGAAC
1 CCTAAACCCTAAAC-CCAAA-CTCGAAC
96450602 CCTAAAC
1 CCTAAAC
96450609 TTGGTCTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
25 12 0.23
26 17 0.33
27 11 0.21
28 12 0.23
ACGTcount: A:0.41, C:0.36, G:0.06, T:0.17
Consensus pattern (26 bp):
CCTAAACCCTAAACCCAAACTCGAAC
Found at i:96450586 original size:7 final size:7
Alignment explanation
Indices: 96450546--96450608 Score: 51
Period size: 7 Copynumber: 9.4 Consensus size: 7
96450536 CCAGAATCCG
96450546 AACCCTA
1 AACCCTA
96450553 AA-CCTA
1 AACCCTA
96450559 AA-CCTA
1 AACCCTA
* *
96450565 AACTC-G
1 AACCCTA
*
96450571 AACCTTA
1 AACCCTA
96450578 AACCCTA
1 AACCCTA
*
96450585 AACTCTA
1 AACCCTA
* *
96450592 AACCTTG
1 AACCCTA
96450599 AACCCTA
1 AACCCTA
96450606 AAC
1 AAC
96450609 TTGGTCTTTT
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
6 15 0.36
7 27 0.64
ACGTcount: A:0.43, C:0.35, G:0.03, T:0.19
Consensus pattern (7 bp):
AACCCTA
Found at i:96450597 original size:21 final size:21
Alignment explanation
Indices: 96450550--96450609 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
96450540 AATCCGAACC
96450550 CTAAACC-TAAA-CCTAAACT
1 CTAAACCTTAAACCCTAAACT
*
96450569 C-GAACCTTAAACCCTAAACT
1 CTAAACCTTAAACCCTAAACT
*
96450589 CTAAACCTTGAACCCTAAACT
1 CTAAACCTTAAACCCTAAACT
96450610 TGGTCTTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.11
19 5 0.14
20 9 0.26
21 17 0.49
ACGTcount: A:0.42, C:0.33, G:0.03, T:0.22
Consensus pattern (21 bp):
CTAAACCTTAAACCCTAAACT
Found at i:96450642 original size:7 final size:7
Alignment explanation
Indices: 96450632--96450680 Score: 64
Period size: 7 Copynumber: 7.1 Consensus size: 7
96450622 TTAAGGTTTG
96450632 GGTTCAA
1 GGTTCAA
96450639 GGTTCAA
1 GGTTCAA
96450646 GGTTCAA
1 GGTTCAA
*
96450653 GGCT-AA
1 GGTTCAA
*
96450659 GGTTCTA
1 GGTTCAA
*
96450666 GGTTCAG
1 GGTTCAA
96450673 GGTTCAA
1 GGTTCAA
96450680 G
1 G
96450681 TTAAAAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
6 5 0.14
7 30 0.86
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (7 bp):
GGTTCAA
Found at i:96455472 original size:77 final size:78
Alignment explanation
Indices: 96455360--96455602 Score: 287
Period size: 77 Copynumber: 3.2 Consensus size: 78
96455350 AAATGGACCA
* * * ** * * *
96455360 TAAAAATGAC-AGCCACAATATTAAATTAAACGAACTGCTAGAATATTGAAGGTCGCGATCTTAA
1 TAAAAATGACAAGCCGCGATATTAAATCAAGTGAACTGTTAGAATATTGAAGATCGCTATCTTAA
*
96455424 ATCGAGCAAACAG
66 ATCGAGCAAACCG
* * * * *
96455437 TAAAAATGACAA-CCGTGGTTTTAAATCGAAG-GAACTGTTAGAATATTGAAGATTGTTATCTTA
1 TAAAAATGACAAGCCGCGATATTAAATC-AAGTGAACTGTTAGAATATTGAAGATCGCTATCTTA
*
96455500 AATCGAGCGAACCG
65 AATCGAGCAAACCG
* * *
96455514 TAAAAATGA-AAGTCGCGATATTAAATCAAGTGAATTGTTAGAATATCGAAGATCGCTATCTTAA
1 TAAAAATGACAAGCCGCGATATTAAATCAAGTGAACTGTTAGAATATTGAAGATCGCTATCTTAA
96455578 ATCGAGCAAACCG
66 ATCGAGCAAACCG
96455591 TAAAAATGACAA
1 TAAAAATGACAA
96455603 TCGCAACAGG
Statistics
Matches: 138, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
76 5 0.04
77 128 0.93
78 5 0.04
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (78 bp):
TAAAAATGACAAGCCGCGATATTAAATCAAGTGAACTGTTAGAATATTGAAGATCGCTATCTTAA
ATCGAGCAAACCG
Found at i:96462082 original size:31 final size:30
Alignment explanation
Indices: 96462042--96462099 Score: 98
Period size: 31 Copynumber: 1.9 Consensus size: 30
96462032 TTTAGCTCAC
96462042 TCTTTATAATAATCCTAACATAAATCAGCT
1 TCTTTATAATAATCCTAACATAAATCAGCT
*
96462072 TCTTTGATAATAATCCTAATATAAATCA
1 TCTTT-ATAATAATCCTAACATAAATCA
96462100 ACATATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (30 bp):
TCTTTATAATAATCCTAACATAAATCAGCT
Found at i:96467827 original size:18 final size:18
Alignment explanation
Indices: 96467801--96467835 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
96467791 TTTATTTTAT
* *
96467801 AAAATTATTATTTAAATA
1 AAAAATATTAATTAAATA
96467819 AAAAATATTAATTAAAT
1 AAAAATATTAATTAAAT
96467836 TATTGATGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAAATATTAATTAAATA
Found at i:96467947 original size:21 final size:21
Alignment explanation
Indices: 96467905--96467948 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
96467895 AATATAGTAT
**
96467905 ATTTATAATATTATGAATATA
1 ATTTATAATAAAATGAATATA
96467926 ATTTATAATAAAAT-AATAATA
1 ATTTATAATAAAATGAAT-ATA
96467947 AT
1 AT
96467949 AACATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTTATAATAAAATGAATATA
Found at i:96471006 original size:21 final size:21
Alignment explanation
Indices: 96470980--96471035 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
96470970 TCTCTCTCAA
96470980 CAAAAATTATAAAATAATTTT
1 CAAAAATTATAAAATAATTTT
96471001 CAAAAAATT-TAAAATAATTTT
1 C-AAAAATTATAAAATAATTTT
*
96471022 -TAAAATTA-AAAATA
1 CAAAAATTATAAAATA
96471036 TTTATACAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 12 0.38
21 13 0.41
22 7 0.22
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (21 bp):
CAAAAATTATAAAATAATTTT
Found at i:96471028 original size:19 final size:19
Alignment explanation
Indices: 96470982--96471048 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 19
96470972 TCTCTCAACA
*
96470982 AAAATTATAAAATAATTTTCAA
1 AAAATT-TAAAATAATTTT--T
96471004 AAAATTTAAAATAATTTTT
1 AAAATTTAAAATAATTTTT
* *
96471023 AAAATTAAAAAT-ATTTAT
1 AAAATTTAAAATAATTTTT
96471041 ACAAATTT
1 A-AAATTT
96471049 CACAAAAAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
18 6 0.15
19 16 0.40
21 12 0.30
22 6 0.15
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAATTTAAAATAATTTTT
Found at i:96472232 original size:2 final size:2
Alignment explanation
Indices: 96472227--96472252 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
96472217 ATATAAGTGA
96472227 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
96472253 TTGGCTCCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96473015 original size:2 final size:2
Alignment explanation
Indices: 96473008--96473046 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
96472998 ATAAGGGAAC
96473008 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96473047 TGTTACAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:96475013 original size:3 final size:3
Alignment explanation
Indices: 96475005--96475034 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
96474995 AAGTAAATTG
96475005 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
96475035 TTGAGTGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:96480175 original size:10 final size:9
Alignment explanation
Indices: 96480149--96480183 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
96480139 TTGTGTGTTC
96480149 TTTATTTTA
1 TTTATTTTA
96480158 TTTATTTTA
1 TTTATTTTA
96480167 TTCTATTTTA
1 TT-TATTTTA
96480177 TTT-TTTT
1 TTTATTTT
96480184 CACAAAATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 4 0.16
9 12 0.48
10 9 0.36
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTTA
Found at i:96480604 original size:15 final size:16
Alignment explanation
Indices: 96480586--96480615 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96480576 TAGGATTCTC
96480586 TAAT-TAAAATTTTAA
1 TAATATAAAATTTTAA
96480601 TAATATAAAATTTTA
1 TAATATAAAATTTTA
96480616 GAAAGAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATATAAAATTTTAA
Found at i:96481024 original size:20 final size:19
Alignment explanation
Indices: 96480978--96481024 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
96480968 CCCACATTAT
*
96480978 TTTTTTAATATTTATTTTA
1 TTTTTTAATATTTATTTCA
96480997 TTTATTTAATAATTT-TATTCA
1 TTT-TTTAAT-ATTTAT-TTCA
96481018 TTTTTTA
1 TTTTTTA
96481025 TTTGTTGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 3 0.12
20 11 0.46
21 10 0.42
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTTTAATATTTATTTCA
Found at i:96484898 original size:53 final size:53
Alignment explanation
Indices: 96484817--96484967 Score: 198
Period size: 53 Copynumber: 2.8 Consensus size: 53
96484807 CTTACACGGT
*
96484817 TCACATATCATACCGAA-GCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACC-AATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
96484872 TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** * *
96484925 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGG
96484968 GCGCACTTAT
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
52 3 0.03
53 78 0.89
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:96488654 original size:2 final size:2
Alignment explanation
Indices: 96488647--96488673 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
96488637 TAGGCAGAGT
96488647 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
96488674 TATTAACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96488862 original size:14 final size:14
Alignment explanation
Indices: 96488843--96488874 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
96488833 TTATAACTAC
96488843 TAATTTTTTCGTCA
1 TAATTTTTTCGTCA
96488857 TAA--TTTTCGTCA
1 TAATTTTTTCGTCA
96488869 TAATTT
1 TAATTT
96488875 GTAGTGTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 4
0.80 0.00 0.20
Matches are distributed among these distances:
12 12 0.75
14 4 0.25
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (14 bp):
TAATTTTTTCGTCA
Found at i:96488865 original size:12 final size:12
Alignment explanation
Indices: 96488848--96488874 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
96488838 ACTACTAATT
96488848 TTTTCGTCATAA
1 TTTTCGTCATAA
96488860 TTTTCGTCATAA
1 TTTTCGTCATAA
96488872 TTT
1 TTT
96488875 GTAGTGTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (12 bp):
TTTTCGTCATAA
Found at i:96491918 original size:3 final size:3
Alignment explanation
Indices: 96491912--96491997 Score: 50
Period size: 3 Copynumber: 28.7 Consensus size: 3
96491902 CTTTTATCTT
* * * * *
96491912 TAA TAA TAA TAA TAA TAC TTA TAA TATT TAA TAA TCA T-A CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* * * * *
96491957 TAA TAC TTA TAA TATT TAA TAA TAA T-A CAA TAA TAA AAA TA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA
96491998 TGTTTAACAA
Statistics
Matches: 60, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
2 2 0.03
3 54 0.90
4 4 0.07
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:96491957 original size:11 final size:11
Alignment explanation
Indices: 96491919--96491992 Score: 53
Period size: 11 Copynumber: 6.7 Consensus size: 11
96491909 CTTTAATAAT
96491919 AATAATAATAC
1 AATAATAATAC
* **
96491930 TTATAAT-ATTT
1 -AATAATAATAC
*
96491941 AATAATCATAC
1 AATAATAATAC
96491952 AATAATAATAC
1 AATAATAATAC
* **
96491963 TTATAAT-ATTT
1 -AATAATAATAC
96491974 AATAATAATAC
1 AATAATAATAC
96491985 AATAATAA
1 AATAATAA
96491993 AAATATGTTT
Statistics
Matches: 46, Mismatches: 13, Indels: 7
0.70 0.20 0.11
Matches are distributed among these distances:
10 10 0.22
11 26 0.57
12 10 0.22
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
AATAATAATAC
Found at i:96491961 original size:33 final size:33
Alignment explanation
Indices: 96491912--96491992 Score: 139
Period size: 33 Copynumber: 2.5 Consensus size: 33
96491902 CTTTTATCTT
96491912 TAATAAT--AATAATAATACTTATAATATTTAA
1 TAATAATACAATAATAATACTTATAATATTTAA
*
96491943 TAATCATACAATAATAATACTTATAATATTTAA
1 TAATAATACAATAATAATACTTATAATATTTAA
96491976 TAATAATACAATAATAA
1 TAATAATACAATAATAA
96491993 AAATATGTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 6 0.13
33 40 0.87
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (33 bp):
TAATAATACAATAATAATACTTATAATATTTAA
Found at i:96494236 original size:18 final size:18
Alignment explanation
Indices: 96494202--96494257 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
96494192 TATTAATGGA
* *
96494202 AAAT-ATTTGAAATATAT
1 AAATAATTTTAAAAATAT
96494219 AAATAATTTTAAAAATAT
1 AAATAATTTTAAAAATAT
** *
96494237 ACCTAATCTTTTAAAATAT
1 AAATAAT-TTTAAAAATAT
96494256 AA
1 AA
96494258 TATATTTATA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
17 4 0.13
18 16 0.52
19 11 0.35
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (18 bp):
AAATAATTTTAAAAATAT
Found at i:96496614 original size:18 final size:18
Alignment explanation
Indices: 96496577--96496630 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
96496567 ATTATAAAAT
* *
96496577 AATTCAAAATAATTTTTAA
1 AATTTAAAAT-ATTTATAA
96496596 AATTTAAAATATTTATAAA
1 AATTTAAAATATTTAT-AA
96496615 AATTTAAAAT-TTTATA
1 AATTTAAAATATTTATA
96496631 TTTTTTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 1 0.03
18 10 0.31
19 21 0.66
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTTAAAATATTTATAA
Found at i:96497035 original size:17 final size:17
Alignment explanation
Indices: 96497013--96497051 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
96497003 AAAAATTTTT
*
96497013 CACTCGATTCAATCAAA
1 CACTCGATTCAACCAAA
*
96497030 CACTCGATTCAACCGAA
1 CACTCGATTCAACCAAA
96497047 CACTC
1 CACTC
96497052 ACCCCTAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.36, C:0.36, G:0.08, T:0.21
Consensus pattern (17 bp):
CACTCGATTCAACCAAA
Found at i:96500026 original size:2 final size:2
Alignment explanation
Indices: 96500021--96500049 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
96500011 CATGTTTTTT
96500021 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
96500050 TGGTGAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96500810 original size:40 final size:41
Alignment explanation
Indices: 96500766--96500862 Score: 106
Period size: 41 Copynumber: 2.4 Consensus size: 41
96500756 TAGATGGAGT
*
96500766 TTTAGCGACG-CTTTTAAAAAAACGCCGCAATAGGTCGACC
1 TTTAGCGACGTCTTTTAAAAAAACGCCGCAATAAGTCGACC
* * * * * *
96500806 TTTAGCGGCGTTTTTTGAAAAAGCGCCGCCATAAGTCGGCC
1 TTTAGCGACGTCTTTTAAAAAAACGCCGCAATAAGTCGACC
* *
96500847 TTTAGCGTCGTTTTTT
1 TTTAGCGACGTCTTTT
96500863 TAAAGCGCCG
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 9 0.19
41 39 0.81
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (41 bp):
TTTAGCGACGTCTTTTAAAAAAACGCCGCAATAAGTCGACC
Found at i:96500849 original size:41 final size:41
Alignment explanation
Indices: 96500777--96500862 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 41
96500767 TTAGCGACGC
*
96500777 TTTTAAAAAAACGCCGCAATAGGTCGACCTTTAGCGGCGTT
1 TTTTAAAAAAACGCCGCAATAAGTCGACCTTTAGCGGCGTT
* * * * *
96500818 TTTTGAAAAAGCGCCGCCATAAGTCGGCCTTTAGCGTCGTT
1 TTTTAAAAAAACGCCGCAATAAGTCGACCTTTAGCGGCGTT
96500859 TTTT
1 TTTT
96500863 TAAAGCGCCG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (41 bp):
TTTTAAAAAAACGCCGCAATAAGTCGACCTTTAGCGGCGTT
Found at i:96501167 original size:113 final size:112
Alignment explanation
Indices: 96500935--96501213 Score: 301
Period size: 113 Copynumber: 2.4 Consensus size: 112
96500925 CGTTTTTATA
* ** * *
96500935 AAAAACGCCGCTATAGGTCCACCTATAGCGGCATTTTTGGAAAAACGCCACTAAAATGTTAGGAA
1 AAAAACGCCGCTAAAGG-AAACCTATAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTAGGAA
* * * * *
96501000 AAACGATGTCATTTTCTATGAGCTTAATTGGCATTAGCGGCGTTTTCG
65 AAACGACGTCATTTTATATGAGCTCAATTGGCAGTAGCGGCGTTTTCC
*
96501048 AGAAAACGCCGCTAAAGGAAACCTATAGCGGCGTTTGTGAAAAAACGCCACTAAAATGTTAAGG-
1 A-AAAACGCCGCTAAAGGAAACCTATAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTT-AGGA
* * **
96501112 AAAACGACGTCGTTTTATATGTGCTCCTTTGGCAGTAGCGGCGTTTTCCC
64 AAAACGACGTCATTTTATATGAGCTCAATTGGCAGTAGCGGCGTTTT-CC
* * * * *
96501162 AAAAACGCAGC-AAAAGATCAAACTTTAGCGGCGTTTTTTTAAAAAACGCCAC
1 AAAAACGCCGCTAAAGGA--AACCTATAGCGGCG-TTTTTGAAAAAACGCCAC
96501214 AATTGCTAAA
Statistics
Matches: 139, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
112 5 0.04
113 86 0.62
114 32 0.23
115 16 0.12
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.25
Consensus pattern (112 bp):
AAAAACGCCGCTAAAGGAAACCTATAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTAGGAAA
AACGACGTCATTTTATATGAGCTCAATTGGCAGTAGCGGCGTTTTCC
Found at i:96501663 original size:15 final size:14
Alignment explanation
Indices: 96501645--96501687 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
96501635 CTTAATATTT
96501645 TTATAGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
96501660 TTATGGGTTTAAGGG
1 TTAT-GGTTTAGGGG
*
96501675 TTATGATTTAGGG
1 TTATGGTTTAGGG
96501688 TTGATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:96502613 original size:37 final size:37
Alignment explanation
Indices: 96502563--96502637 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
96502553 CCATCTCGTC
96502563 TTCCTTCCCCAAATCCCTAAAACAAAACCTCTTTTTT
1 TTCCTTCCCCAAATCCCTAAAACAAAACCTCTTTTTT
96502600 TTCCTTCCCCAAATCCCTAAAACAAAACCTCTTTTTT
1 TTCCTTCCCCAAATCCCTAAAACAAAACCTCTTTTTT
96502637 T
1 T
96502638 CCCCAAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.36
Consensus pattern (37 bp):
TTCCTTCCCCAAATCCCTAAAACAAAACCTCTTTTTT
Found at i:96502655 original size:36 final size:34
Alignment explanation
Indices: 96502566--96502646 Score: 121
Period size: 37 Copynumber: 2.4 Consensus size: 34
96502556 TCTCGTCTTC
96502566 CTTCCCCAAATCCCTAAAACAAAACCTCTTTTTTTT
1 CTTCCCCAAATCCCTAAAACAAAACCTC--TTTTTT
96502602 CCTTCCCCAAATCCCTAAAACAAAACCTC-TTTTT
1 -CTTCCCCAAATCCCTAAAACAAAACCTCTTTTTT
96502636 -TTCCCCAAATC
1 CTTCCCCAAATC
96502647 TTCCCCTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
32 11 0.25
34 5 0.11
37 28 0.64
ACGTcount: A:0.31, C:0.37, G:0.00, T:0.32
Consensus pattern (34 bp):
CTTCCCCAAATCCCTAAAACAAAACCTCTTTTTT
Found at i:96504919 original size:134 final size:133
Alignment explanation
Indices: 96504696--96504948 Score: 488
Period size: 134 Copynumber: 1.9 Consensus size: 133
96504686 TGGTGATTCC
96504696 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
96504761 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
96504826 TAT
131 TAT
*
96504829 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTTCATGTTTCTATCCAACTTATGTGTTTAGT
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTG-TTTTCATGTTTCTATCCAACTTATGTGTTTAGT
96504894 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
65 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
96504949 TGTTGAATTC
Statistics
Matches: 118, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
133 30 0.25
134 88 0.75
ACGTcount: A:0.20, C:0.10, G:0.19, T:0.52
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:96506963 original size:21 final size:21
Alignment explanation
Indices: 96506939--96506978 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
96506929 GTTTTTATGT
*
96506939 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
96506960 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
96506979 GAATTAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:96508656 original size:24 final size:24
Alignment explanation
Indices: 96508629--96508695 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
96508619 ATTATTATTG
*
96508629 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
96508653 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
96508677 AAATATTATCGTCCGTTTT
1 AAATATTATCGTCCGTTTT
96508696 CCATTTAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 35 0.90
25 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:96508916 original size:15 final size:15
Alignment explanation
Indices: 96508872--96508927 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
96508862 AACGACATGT
96508872 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
96508888 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
96508901 ATATTATTTAATTAA
1 ATATTATTTAATTAA
96508916 ATATTATTTAAT
1 ATATTATTTAAT
96508928 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:96509044 original size:9 final size:9
Alignment explanation
Indices: 96509032--96509243 Score: 123
Period size: 9 Copynumber: 23.6 Consensus size: 9
96509022 TATTTGATAT
*
96509032 CATAATTTA
1 CATAACTTA
*
96509041 CATAGCTTA
1 CATAACTTA
* *
96509050 TATAACATA
1 CATAACTTA
*
96509059 TATAACTTA
1 CATAACTTA
96509068 CATAACTTA
1 CATAACTTA
* *
96509077 TATAACATA
1 CATAACTTA
96509086 CATAACTTA
1 CATAACTTA
*
96509095 TATAACTTA
1 CATAACTTA
*
96509104 TATAACTTA
1 CATAACTTA
* *
96509113 GATAA-ATA
1 CATAACTTA
*
96509121 TATAACTTA
1 CATAACTTA
96509130 CATAACTTA
1 CATAACTTA
96509139 CATAATACTTA
1 CAT-A-ACTTA
*
96509150 -ATATATTTATA
1 CATA-A-CT-TA
*
96509161 TCATAATTTA
1 -CATAACTTA
96509171 CATAACTTA
1 CATAACTTA
96509180 CATAACTTA
1 CATAACTTA
* *
96509189 GATAA-ATA
1 CATAACTTA
* *
96509197 TATAATTTA
1 CATAACTTA
*
96509206 CATAA-ATA
1 CATAACTTA
*
96509214 TAT-A--TA
1 CATAACTTA
*
96509220 TCATAAATTA
1 -CATAACTTA
96509230 CATAACTTA
1 CATAACTTA
96509239 CATAA
1 CATAA
96509244 TACTTAAATA
Statistics
Matches: 163, Mismatches: 28, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
6 2 0.01
7 3 0.02
8 17 0.10
9 120 0.74
10 8 0.05
11 9 0.06
12 1 0.01
13 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:96509183 original size:50 final size:52
Alignment explanation
Indices: 96509118--96509267 Score: 161
Period size: 50 Copynumber: 2.9 Consensus size: 52
96509108 ACTTAGATAA
96509118 ATAT-ATAACTTACATAACTTACATAATACTTAATATATTTATATCATA-AT
1 ATATCATAACTTACATAACTTACATAATACTTAATATATTTATATCATATAT
* * * *
96509168 TTA-CATAACTTACATAACTTAGATAA-A--T-ATATAATTTACATAAATATAT
1 ATATCATAACTTACATAACTTACATAATACTTAATAT-ATTTATAT-CATATAT
* *
96509217 ATATCATAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
1 ATATCATAACTTACATAACTTACATAATACTT-AATATAT-TTATATCATA
96509268 CATAACTAGT
Statistics
Matches: 79, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
46 4 0.05
47 8 0.10
48 3 0.04
49 5 0.06
50 44 0.56
51 1 0.01
53 1 0.01
54 5 0.06
55 8 0.10
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (52 bp):
ATATCATAACTTACATAACTTACATAATACTTAATATATTTATATCATATAT
Found at i:96509224 original size:15 final size:17
Alignment explanation
Indices: 96509190--96509227 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
96509180 CATAACTTAG
*
96509190 ATAAATATATAATTTAC
1 ATAAATATATAATATAC
96509207 ATAAATATAT-ATAT-C
1 ATAAATATATAATATAC
96509222 ATAAAT
1 ATAAAT
96509228 TACATAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 7 0.35
16 3 0.15
17 10 0.50
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAAATATATAATATAC
Found at i:96509257 original size:59 final size:61
Alignment explanation
Indices: 96509156--96509317 Score: 167
Period size: 60 Copynumber: 2.7 Consensus size: 61
96509146 CTTAATATAT
* * * *
96509156 TTATATCATAATTTACATAACTTACAT-A-ACTTAGATAAATAT-ATAAT-TTACATAAATA
1 TTATATCATAAATTACATAACTTACATAATACTTAAATATATATCAT-ATCATACATAAATA
*
96509214 TATATATCATAAATTACATAACTTACATAATACTTAAATATATATCATATCATACATAACTA
1 T-TATATCATAAATTACATAACTTACATAATACTTAAATATATATCATATCATACATAAATA
* * *
96509276 GTT-TA-CA-AAATTTACTTAACTTACATAATACATAAATCTATA
1 -TTATATCATAAA-TTACATAACTTACATAATACTTAAATATATA
96509318 GTCGAAAATC
Statistics
Matches: 89, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
58 1 0.01
59 28 0.31
60 31 0.35
61 16 0.18
62 12 0.13
63 1 0.01
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (61 bp):
TTATATCATAAATTACATAACTTACATAATACTTAAATATATATCATATCATACATAAATA
Found at i:96510851 original size:39 final size:40
Alignment explanation
Indices: 96510793--96510893 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
96510783 AAATTGAATG
* *
96510793 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
96510832 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
96510872 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
96510894 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:96510886 original size:40 final size:40
Alignment explanation
Indices: 96510793--96510974 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
96510783 AAATTGAATG
* * * * *
96510793 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
96510832 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
96510872 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
96510912 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
96510952 ATATCCGGG-TAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
96510975 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 44 0.36
40 75 0.62
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:96518967 original size:40 final size:39
Alignment explanation
Indices: 96518799--96518969 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
96518789 AGAAATTGAA
* *
96518799 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
96518839 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
96518879 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
96518919 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
96518959 TGATATCCGGG
1 TGATATCCGGG
96518970 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:96526789 original size:25 final size:26
Alignment explanation
Indices: 96526761--96526882 Score: 160
Period size: 25 Copynumber: 4.7 Consensus size: 26
96526751 TTGTTTTTAG
96526761 GGGGTTGTTTTTTG-TTTTTGGAGGA
1 GGGGTTGTTTTTTGTTTTTTGGAGGA
*
96526786 GGGGTTTTTTTTTTTGGTTTTTTGGAGGA
1 GGGG--TTGTTTTTT-GTTTTTTGGAGGA
96526815 -GGGTTGTTTTTTGTTTTTTGGAGGA
1 GGGGTTGTTTTTTGTTTTTTGGAGGA
* **
96526840 -GGGTTGTTTTTTGTTTTTTAGAATA
1 GGGGTTGTTTTTTGTTTTTTGGAGGA
96526865 GGGGTTGTTTTTTGTTTT
1 GGGGTTGTTTTTTGTTTT
96526883 AGAAAGGCTA
Statistics
Matches: 87, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
25 39 0.45
26 25 0.29
27 8 0.09
28 4 0.05
29 11 0.13
ACGTcount: A:0.08, C:0.00, G:0.34, T:0.58
Consensus pattern (26 bp):
GGGGTTGTTTTTTGTTTTTTGGAGGA
Found at i:96527046 original size:26 final size:25
Alignment explanation
Indices: 96527013--96527132 Score: 154
Period size: 25 Copynumber: 4.7 Consensus size: 25
96527003 TAGCCTTTCC
**
96527013 AAAACAAAAAACAACCCCTATTCCAA
1 AAAACAAAAAACAA-CCCTCCTCCAA
96527039 AAAACAAAAAACAACCCTCCTCCAA
1 AAAACAAAAAACAACCCTCCTCCAA
96527064 AAAACAAAAAA-AACCCTCCTCCAAAA
1 AAAACAAAAAACAACCCTCCTCC--AA
*
96527090 ACAAAAAAAAAACAATCCCTCCT-CAA
1 A-AAACAAAAAACAA-CCCTCCTCCAA
96527116 AAAACAAAAAACAACCC
1 AAAACAAAAAACAACCC
96527133 CCTAAAAACA
Statistics
Matches: 85, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
24 14 0.16
25 32 0.38
26 20 0.24
27 9 0.11
28 3 0.04
29 7 0.08
ACGTcount: A:0.60, C:0.32, G:0.00, T:0.08
Consensus pattern (25 bp):
AAAACAAAAAACAACCCTCCTCCAA
Found at i:96527126 original size:29 final size:28
Alignment explanation
Indices: 96527039--96527126 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 28
96527029 CCTATTCCAA
96527039 AAAACAAAAAACAACCCTCCTCCAAAAAAC
1 AAAA-AAAAAACAACCCTCCT-CAAAAAAC
*
96527069 ----AAAAAA-AACCCTCCTCCAAAAAC
1 AAAAAAAAAACAACCCTCCTCAAAAAAC
96527092 AAAAAAAAAACAATCCCTCCTCAAAAAAC
1 AAAAAAAAAACAA-CCCTCCTCAAAAAAC
96527121 AAAAAA
1 AAAAAA
96527127 CAACCCCCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
23 7 0.14
24 9 0.18
25 6 0.12
27 6 0.12
28 2 0.04
29 20 0.40
ACGTcount: A:0.62, C:0.30, G:0.00, T:0.08
Consensus pattern (28 bp):
AAAAAAAAAACAACCCTCCTCAAAAAAC
Found at i:96531755 original size:20 final size:22
Alignment explanation
Indices: 96531715--96531756 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
96531705 ATTACTAATA
*
96531715 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
96531737 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
96531757 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:96531780 original size:13 final size:14
Alignment explanation
Indices: 96531764--96531805 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
96531754 TTTCAATTTT
96531764 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
96531777 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
96531792 ATTTTAAATAATAT
1 ATTTT-AATAATAT
96531806 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:96531790 original size:16 final size:16
Alignment explanation
Indices: 96531768--96531804 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
96531758 AATTTTATTT
96531768 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
96531785 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
96531800 TAATA
1 TAATA
96531805 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:96531857 original size:15 final size:15
Alignment explanation
Indices: 96531837--96531893 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
96531827 ATTCAATATT
96531837 AATATTTTAATAATA
1 AATATTTTAATAATA
*
96531852 AATATTTATTAAAATTATA
1 AATA-TT-TT--AATAATA
*
96531871 AATATATTAATAATA
1 AATATTTTAATAATA
*
96531886 AATGTTTT
1 AATATTTT
96531894 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:96533187 original size:21 final size:21
Alignment explanation
Indices: 96533150--96533205 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
96533140 AAATATATGC
* *
96533150 ATAATATATACATATTAGAAATA
1 ATAATA-ATA-ATATTAAAAACA
96533173 ATAATAATAATATTAAAAACA
1 ATAATAATAATATTAAAAACA
*
96533194 ACTATTAATAAT
1 A-TAATAATAAT
96533206 GCTACATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.38
22 12 0.41
23 6 0.21
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (21 bp):
ATAATAATAATATTAAAAACA
Found at i:96533263 original size:26 final size:25
Alignment explanation
Indices: 96533221--96533327 Score: 80
Period size: 25 Copynumber: 4.3 Consensus size: 25
96533211 ATAAATATAC
96533221 ACAT-ATAT-ATATTAAAAATAGAT
1 ACATAATATGATATTAAAAATAGAT
*
96533244 ACATAATAATGATATTAAAAGTATG-T
1 ACATAAT-ATGATATTAAAAATA-GAT
* * *
96533270 ACGTAATAT-AGTGTTAAAAATACAT
1 ACATAATATGA-TATTAAAAATAGAT
* * *
96533295 ACATGATATAGTTATT-AAAATATAT
1 ACATAATAT-GATATTAAAAATAGAT
96533320 ACATAATA
1 ACATAATA
96533328 CAATAAAATA
Statistics
Matches: 65, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
23 4 0.06
24 3 0.05
25 36 0.55
26 21 0.32
27 1 0.02
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (25 bp):
ACATAATATGATATTAAAAATAGAT
Found at i:96533311 original size:51 final size:50
Alignment explanation
Indices: 96533213--96533327 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 50
96533203 AATGCTACAT
* * *
96533213 AAATATACACAT-ATATA-TATTAAAAATAGATACATAATAATGATATTA
1 AAATATATACATAATATAGTGTTAAAAATACATACATAATAATGATATTA
* * * *
96533261 AAAGTATGTACGTAATATAGTGTTAAAAATACATACATGAT-ATAGTTATTA
1 AAA-TATATACATAATATAGTGTTAAAAATACATACATAATAAT-GATATTA
96533312 AAATATATACATAATA
1 AAATATATACATAATA
96533328 CAATAAAATA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
48 3 0.06
49 6 0.11
50 18 0.33
51 27 0.50
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (50 bp):
AAATATATACATAATATAGTGTTAAAAATACATACATAATAATGATATTA
Found at i:96533392 original size:15 final size:15
Alignment explanation
Indices: 96533311--96533411 Score: 59
Period size: 15 Copynumber: 6.9 Consensus size: 15
96533301 TATAGTTATT
*
96533311 AAAATAT-ATACATA
1 AAAATATAATATATA
*
96533325 ATACAATAAAATATATGA
1 A-A-AATATAATATAT-A
* * *
96533343 ATAATATGATATTTA
1 AAAATATAATATATA
96533358 AAAA-AT-ATATAT-
1 AAAATATAATATATA
* *
96533370 -ATACATAATATATA
1 AAAATATAATATATA
*
96533384 AAAATATAATATTTA
1 AAAATATAATATATA
*
96533399 AAAAAATAATATA
1 AAAATATAATATA
96533412 CATAATATAA
Statistics
Matches: 65, Mismatches: 14, Indels: 15
0.69 0.15 0.16
Matches are distributed among these distances:
11 2 0.03
12 2 0.03
13 11 0.17
14 3 0.05
15 27 0.42
16 13 0.20
17 5 0.08
18 2 0.03
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (15 bp):
AAAATATAATATATA
Found at i:96533396 original size:41 final size:40
Alignment explanation
Indices: 96533334--96533420 Score: 131
Period size: 41 Copynumber: 2.1 Consensus size: 40
96533324 AATACAATAA
* *
96533334 AATATATGAATAATATGATATTTAAAAAATATATATATACAT
1 AATATATGAAAAATATAATATTTAAAAAA-ATA-ATATACAT
96533376 AATATAT-AAAAATATAATATTTAAAAAAATAATATACAT
1 AATATATGAAAAATATAATATTTAAAAAAATAATATACAT
96533415 AATATA
1 AATATA
96533421 AGAGTATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 14 0.33
40 3 0.07
41 19 0.44
42 7 0.16
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (40 bp):
AATATATGAAAAATATAATATTTAAAAAAATAATATACAT
Found at i:96533411 original size:28 final size:31
Alignment explanation
Indices: 96533379--96533448 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 31
96533369 TATACATAAT
*
96533379 ATATA-AAAATATAATA-T-TTAAAAAAATA
1 ATATACAAAATATAAGAGTATTAAAAAAATA
* *
96533407 ATATACATAATATAAGAGTATTAAAATAATA
1 ATATACAAAATATAAGAGTATTAAAAAAATA
*
96533438 A-ATAGAAAATA
1 ATATACAAAATA
96533449 ATGAAGAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
28 5 0.15
29 9 0.26
30 9 0.26
31 11 0.32
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (31 bp):
ATATACAAAATATAAGAGTATTAAAAAAATA
Found at i:96533483 original size:12 final size:11
Alignment explanation
Indices: 96533466--96533802 Score: 83
Period size: 12 Copynumber: 30.4 Consensus size: 11
96533456 AATGAGTAAA
96533466 AATAATATACAT
1 AATAATATA-AT
96533478 AATAATATAAT
1 AATAATATAAT
* *
96533489 AAGAAAATAAT
1 AATAATATAAT
*
96533500 -ATATTTATAAT
1 AATA-ATATAAT
* *
96533511 AAGTACT-TAAA
1 AA-TAATATAAT
*
96533522 AAT-ATCTATAT
1 AATAATATA-AT
* *
96533533 GTATATATGTA-T
1 -AATA-ATATAAT
96533545 AATAATGATAA-
1 AATAAT-ATAAT
96533556 AA-AATAATAAT
1 AATAAT-ATAAT
* *
96533567 AATAGTGAAAAT
1 AATAAT-ATAAT
96533579 AATAAATATAAT
1 AAT-AATATAAT
96533591 AATAAATATAAT
1 AAT-AATATAAT
* **
96533603 AATAGAAACGAT
1 AATA-ATATAAT
96533615 AATACTATATAA-
1 AATA--ATATAAT
96533627 AAGTATATATATAT
1 AA-TA-ATATA-AT
96533641 ACAT-ATATAAT
1 A-ATAATATAAT
96533652 AA-AATAT-AT
1 AATAATATAAT
*
96533661 ACTAATATTAAT
1 AATAATA-TAAT
96533673 AATAA-AT-AT
1 AATAATATAAT
**
96533682 AATAGGGATAA-
1 AATA-ATATAAT
96533693 AAGTAGATATAAT
1 AA-TA-ATATAAT
96533706 AAT-ATA-AAT
1 AATAATATAAT
* *
96533715 AATACGTA-CAT
1 AATA-ATATAAT
96533726 GAA-AA-ATAAT
1 -AATAATATAAT
96533736 AATAA-ATAAT
1 AATAATATAAT
96533746 AATAATATAAT
1 AATAATATAAT
96533757 AAT-A-A-AAT
1 AATAATATAAT
*
96533765 -ATGATATAAT
1 AATAATATAAT
*
96533775 AATAGTGTATAA-
1 AATA--ATATAAT
96533787 AATAATAGTAAT
1 AATAATA-TAAT
96533799 AATA
1 AATA
96533803 TTTACAATAA
Statistics
Matches: 245, Mismatches: 38, Indels: 84
0.67 0.10 0.23
Matches are distributed among these distances:
7 2 0.01
8 4 0.02
9 21 0.09
10 47 0.19
11 59 0.24
12 88 0.36
13 17 0.07
14 6 0.02
15 1 0.00
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (11 bp):
AATAATATAAT
Found at i:96533564 original size:3 final size:3
Alignment explanation
Indices: 96533543--96533802 Score: 70
Period size: 3 Copynumber: 86.0 Consensus size: 3
96533533 GTATATATGT
* *
96533543 ATA ATA ATG ATA A-A A-A ATA ATA ATA ATA GTGA A-A ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
** *
96533585 TATA ATA ATA A-A TATA ATA ATA GA-A ACG ATA ATA CTA TATA A-A AGT-
1 -ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA -ATA ATA A-TA
* *
96533631 ATA TATA TATA CATA TATA ATA A-A ATA TATA CTA ATA TTA ATA ATA
1 ATA -ATA -ATA -ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
*** *
96533677 A-A TATA ATA GGG ATA A-A AGTA GAT- ATA ATA AT- ATAA ATA ATA CGTA
1 ATA -ATA ATA ATA ATA ATA A-TA -ATA ATA ATA ATA AT-A ATA ATA -ATA
* *
96533723 CATGA AAA ATA ATA ATAA ATA ATA ATA AT- ATA ATA ATA A-A AT- ATG
1 -AT-A ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
96533768 AT- ATA ATA ATA GTGT ATA A-A ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
96533803 TTTACAATAA
Statistics
Matches: 193, Mismatches: 31, Indels: 66
0.67 0.11 0.23
Matches are distributed among these distances:
2 31 0.16
3 124 0.64
4 36 0.19
5 2 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:96533603 original size:24 final size:23
Alignment explanation
Indices: 96533543--96533778 Score: 95
Period size: 24 Copynumber: 10.3 Consensus size: 23
96533533 GTATATATGT
* *
96533543 ATAATAATGATAAAAAATAATAATA
1 ATAAT-ATAATAATAAAT-ATAATA
* *
96533568 ATAGTGAAAATAATAAATATAATA
1 ATAAT-ATAATAATAAATATAATA
**
96533592 ATAAATATAATAATAGAA-ACGATA
1 AT-AATATAATAATA-AATATAATA
* *
96533616 ATACTAT-ATAA-AAGTATATATA
1 ATAATATAATAATAAATATA-ATA
96533638 TATACATAT-ATAATAAA-ATATATA
1 -ATA-ATATAATAATAAATATA-ATA
*
96533662 CTAATATTAATAATAAATATAATA
1 ATAATA-TAATAATAAATATAATA
*** * *
96533686 GGGATA-AA-AGTAGATATAATA
1 ATAATATAATAATAAATATAATA
** *
96533707 AT-ATA-AATAATACGTA-CATGA
1 ATAATATAATAATAAATATAAT-A
96533728 A-AA-ATAATAAT-AA-ATAATA
1 ATAATATAATAATAAATATAATA
96533747 ATAATATAATAATAAAATATGATATA
1 ATAATATAATAAT-AAATAT-A-ATA
96533773 ATAATA
1 ATAATA
96533779 GTGTATAAAA
Statistics
Matches: 159, Mismatches: 30, Indels: 43
0.69 0.13 0.19
Matches are distributed among these distances:
19 3 0.02
20 13 0.08
21 35 0.22
22 12 0.08
23 12 0.08
24 52 0.33
25 23 0.14
26 9 0.06
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (23 bp):
ATAATATAATAATAAATATAATA
Found at i:96533668 original size:20 final size:21
Alignment explanation
Indices: 96533635--96533682 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
96533625 AAAAGTATAT
96533635 ATATATACATATA-TAATAAA
1 ATATATACATATATTAATAAA
96533655 ATATATAC-TAATATTAATAATA
1 ATATATACAT-ATATTAATAA-A
96533677 A-ATATA
1 ATATATA
96533683 ATAGGGATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 1 0.04
20 11 0.44
21 11 0.44
22 2 0.08
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATACATATATTAATAAA
Found at i:96533777 original size:18 final size:20
Alignment explanation
Indices: 96533543--96533803 Score: 86
Period size: 21 Copynumber: 12.8 Consensus size: 20
96533533 GTATATATGT
* *
96533543 ATAATAATGATAA-AAAATA
1 ATAATAATAATAATATAATA
* *
96533562 ATAATAATAGTGAAAATAATA
1 ATAATAATAAT-AATATAATA
96533583 A-ATATAATAATAAATATAATA
1 ATA-ATAATAAT-AATATAATA
**
96533604 ATAGA-AACGATAATACT-AT-
1 ATA-ATAATAATAATA-TAATA
96533623 ATAA-AAGTATATATATATACATA
1 ATAATAA-TA-ATA-ATATA-ATA
*
96533646 TATAATAA-AAT-ATATACTA
1 -ATAATAATAATAATATAATA
*
96533665 ATATTAATAATAAATATAATA
1 ATAATAATAAT-AATATAATA
***
96533686 GGGATAA-AAGTAGATATAATA
1 ATAATAATAA-TA-ATATAATA
96533707 AT-AT-A-AATAATACGTACATGA
1 ATAATAATAATAATA--TA-AT-A
*
96533728 AAAATAATAATAA-ATAATA
1 ATAATAATAATAATATAATA
*
96533747 ATAAT-ATAATAATAAAAT-
1 ATAATAATAATAATATAATA
*
96533765 ATGATATAATAATAGTGTATAA-A
1 AT-A-ATAATAATA--ATATAATA
*
96533788 ATAATAGTAATAATAT
1 ATAATAATAATAATAT
96533804 TTACAATAAA
Statistics
Matches: 183, Mismatches: 27, Indels: 64
0.67 0.10 0.23
Matches are distributed among these distances:
17 3 0.02
18 20 0.11
19 35 0.19
20 29 0.16
21 67 0.37
22 9 0.05
23 9 0.05
24 9 0.05
25 2 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (20 bp):
ATAATAATAATAATATAATA
Found at i:96533971 original size:24 final size:24
Alignment explanation
Indices: 96533925--96533980 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
96533915 TAAAATGAAA
* *
96533925 AAATAATAGTGATAATAAGAATAT
1 AAATAATAGTCATAAGAAGAATAT
* * *
96533949 TAATAATAGTCATAAGGATAATAT
1 AAATAATAGTCATAAGAAGAATAT
96533973 AAATAATA
1 AAATAATA
96533981 TTTAAAATAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.57, C:0.02, G:0.11, T:0.30
Consensus pattern (24 bp):
AAATAATAGTCATAAGAAGAATAT
Found at i:96535386 original size:14 final size:14
Alignment explanation
Indices: 96535367--96535400 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
96535357 AAAGTAAACA
96535367 ATTTTCCCGAAATC
1 ATTTTCCCGAAATC
* *
96535381 ATTTTCCGGAAGTC
1 ATTTTCCCGAAATC
96535395 ATTTTC
1 ATTTTC
96535401 AGTTAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (14 bp):
ATTTTCCCGAAATC
Found at i:96541266 original size:26 final size:26
Alignment explanation
Indices: 96541230--96541313 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
96541220 CATGAAATTC
96541230 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
96541256 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
96541282 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
96541308 TTATCA
1 TTATCA
96541314 ATTTATCAAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:96543142 original size:28 final size:27
Alignment explanation
Indices: 96543086--96543164 Score: 63
Period size: 28 Copynumber: 2.9 Consensus size: 27
96543076 GTATTTAGTA
* **
96543086 TTTAATTA-AAT-TTTAAATATTTTATT
1 TTTAATTACAATAATTAAATATAATA-T
96543112 TTTAATTACAATAATTAAAGTATAATAT
1 TTTAATTACAATAATTAAA-TATAATAT
* ** *
96543140 TTTTATTTGAATTATTAAATATAAT
1 TTTAATTACAATAATTAAATATAAT
96543165 TAAAATATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
26 8 0.19
27 9 0.21
28 21 0.49
29 5 0.12
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (27 bp):
TTTAATTACAATAATTAAATATAATAT
Found at i:96544165 original size:15 final size:16
Alignment explanation
Indices: 96544145--96544187 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
96544135 AATAAACAAA
96544145 ATAAATATTTTAA-TT
1 ATAAATATTTTAATTT
***
96544160 ATAAATATGAAAATTT
1 ATAAATATTTTAATTT
96544176 ATAAATATTTTA
1 ATAAATATTTTA
96544188 TTCGACGTCG
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
ATAAATATTTTAATTT
Found at i:96548012 original size:25 final size:27
Alignment explanation
Indices: 96547975--96548027 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
96547965 AACAATCATT
*
96547975 GCATAGTCATGAATGAA-GCAATGAAA
1 GCATAGTCATGAATGAAGGAAATGAAA
96548001 GCAT-GTCATGAATGAAGGAAATGAAA
1 GCATAGTCATGAATGAAGGAAATGAAA
96548027 G
1 G
96548028 AAAATTACCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.45, C:0.09, G:0.26, T:0.19
Consensus pattern (27 bp):
GCATAGTCATGAATGAAGGAAATGAAA
Found at i:96548490 original size:3 final size:3
Alignment explanation
Indices: 96548482--96548511 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
96548472 TCAATTGTAA
96548482 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
96548512 AATGGGAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:96548976 original size:93 final size:93
Alignment explanation
Indices: 96548817--96549007 Score: 382
Period size: 93 Copynumber: 2.1 Consensus size: 93
96548807 ATTAAAAATT
96548817 AAATAAAAGTAGATAAACATTTCAAAAATAAATAAAATGAGAGAAATGAGGGATAATTACTTTAT
1 AAATAAAAGTAGATAAACATTTCAAAAATAAATAAAATGAGAGAAATGAGGGATAATTACTTTAT
96548882 AACCCTGTAAAATTTCTCTTTATTATCG
66 AACCCTGTAAAATTTCTCTTTATTATCG
96548910 AAATAAAAGTAGATAAACATTTCAAAAATAAATAAAATGAGAGAAATGAGGGATAATTACTTTAT
1 AAATAAAAGTAGATAAACATTTCAAAAATAAATAAAATGAGAGAAATGAGGGATAATTACTTTAT
96548975 AACCCTGTAAAATTTCTCTTTATTATCG
66 AACCCTGTAAAATTTCTCTTTATTATCG
96549003 AAATA
1 AAATA
96549008 TCTAATAACC
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 98 1.00
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.31
Consensus pattern (93 bp):
AAATAAAAGTAGATAAACATTTCAAAAATAAATAAAATGAGAGAAATGAGGGATAATTACTTTAT
AACCCTGTAAAATTTCTCTTTATTATCG
Found at i:96551820 original size:29 final size:29
Alignment explanation
Indices: 96551786--96551845 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
96551776 AGAACATTAT
*
96551786 AAAATT-AAAAATTAAATACAAGT-AGATAA
1 AAAATTCAAAAA-TAAATA-AAGTGAGAGAA
96551815 AAAATTCAAAAATAAATAAAGTGAGAGAA
1 AAAATTCAAAAATAAATAAAGTGAGAGAA
96551844 AA
1 AA
96551846 TGAGGGGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 4 0.14
29 19 0.68
30 5 0.18
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.20
Consensus pattern (29 bp):
AAAATTCAAAAATAAATAAAGTGAGAGAA
Found at i:96554207 original size:21 final size:22
Alignment explanation
Indices: 96554181--96554221 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
96554171 GACCTTTCCA
*
96554181 AGGTATGGG-TAGGTATGGGGT
1 AGGTATGGGCAAGGTATGGGGT
96554202 AGGTATGGGCAAGGTATGGG
1 AGGTATGGGCAAGGTATGGG
96554222 CAAGGAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.22, C:0.02, G:0.51, T:0.24
Consensus pattern (22 bp):
AGGTATGGGCAAGGTATGGGGT
Found at i:96554222 original size:11 final size:11
Alignment explanation
Indices: 96554179--96554232 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
96554169 TTGACCTTTC
96554179 CAAGGTATGGG
1 CAAGGTATGGG
*
96554190 -TAGGTATGGG
1 CAAGGTATGGG
**
96554200 GTAGGTATGGG
1 CAAGGTATGGG
96554211 CAAGGTATGGG
1 CAAGGTATGGG
*
96554222 CAAGGAATGGG
1 CAAGGTATGGG
96554233 TATATTCTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.26, C:0.06, G:0.48, T:0.20
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:96558308 original size:18 final size:18
Alignment explanation
Indices: 96558285--96558326 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
96558275 ACCGTACGTG
96558285 AATAGTACCGTATACATA
1 AATAGTACCGTATACATA
*
96558303 AATAGTACCGTATACGTA
1 AATAGTACCGTATACATA
96558321 AATAGT
1 AATAGT
96558327 GTCATAAACG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (18 bp):
AATAGTACCGTATACATA
Found at i:96558912 original size:11 final size:11
Alignment explanation
Indices: 96558866--96558920 Score: 69
Period size: 11 Copynumber: 5.1 Consensus size: 11
96558856 TGACCTTTCC
96558866 AAGGTATGGGT
1 AAGGTATGGGT
96558877 -AGGTATGGGGT
1 AAGGTAT-GGGT
*
96558888 -AGGTATGGGC
1 AAGGTATGGGT
96558898 AAGGTATGGGT
1 AAGGTATGGGT
*
96558909 AAGGAATGGGT
1 AAGGTATGGGT
96558920 A
1 A
96558921 TATTCTAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
10 9 0.23
11 30 0.77
ACGTcount: A:0.27, C:0.02, G:0.47, T:0.24
Consensus pattern (11 bp):
AAGGTATGGGT
Found at i:96560973 original size:17 final size:17
Alignment explanation
Indices: 96560951--96560986 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
96560941 AATGCTTTCT
96560951 TTGCTCTTGGGTCTAAC
1 TTGCTCTTGGGTCTAAC
96560968 TTGCTCTTGGGTCTAAC
1 TTGCTCTTGGGTCTAAC
96560985 TT
1 TT
96560987 AGAGTATGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (17 bp):
TTGCTCTTGGGTCTAAC
Found at i:96564695 original size:17 final size:17
Alignment explanation
Indices: 96564644--96564687 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
96564634 GGCTGTGTAG
*
96564644 GCCACATGGGCATGTGT
1 GCCACATGAGCATGTGT
*
96564661 GCCACATGAGCATATGT
1 GCCACATGAGCATGTGT
96564678 GCCACATGAG
1 GCCACATGAG
96564688 TGTGTGTGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.20
Consensus pattern (17 bp):
GCCACATGAGCATGTGT
Found at i:96565437 original size:34 final size:34
Alignment explanation
Indices: 96565368--96565526 Score: 135
Period size: 34 Copynumber: 4.6 Consensus size: 34
96565358 TTTTGGTCTG
* *
96565368 ATATGACATTCTGATATGATATATGTGTTTTTGAAA
1 ATATGACATTCTGATCTGATATA--TGTTTATGAAA
*
96565404 ACT-TGACATTCTGGTCTGATATATGTTTATGAAA
1 A-TATGACATTCTGATCTGATATATGTTTATGAAA
* * * *
96565438 ATATGATATT-TCGACCTGAAATATG-TTCTGAAA
1 ATATGACATTCT-GATCTGATATATGTTTATGAAA
* * **
96565471 ATATGACATTATGATCTGATATATGTTTCTGGTA
1 ATATGACATTCTGATCTGATATATGTTTATGAAA
** *
96565505 ATACAACATTCTGATATGATAT
1 ATATGACATTCTGATCTGATAT
96565527 TTGTACATTA
Statistics
Matches: 101, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
33 29 0.29
34 52 0.51
36 19 0.19
37 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (34 bp):
ATATGACATTCTGATCTGATATATGTTTATGAAA
Found at i:96567263 original size:14 final size:14
Alignment explanation
Indices: 96567244--96567271 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96567234 CCTTGACTAT
96567244 CTTACAAAGCTAGC
1 CTTACAAAGCTAGC
96567258 CTTACAAAGCTAGC
1 CTTACAAAGCTAGC
96567272 AGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (14 bp):
CTTACAAAGCTAGC
Found at i:96567330 original size:26 final size:28
Alignment explanation
Indices: 96567293--96567345 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
96567283 ACCAATCATT
*
96567293 GCATAGTCATGAATGAAGCAAA-GAAAA
1 GCATAGTCATGAAGGAAGCAAATGAAAA
96567320 GCAT-GTCATGAAGGAAGCAAATGAAA
1 GCATAGTCATGAAGGAAGCAAATGAAA
96567346 GATGAAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.49, C:0.11, G:0.25, T:0.15
Consensus pattern (28 bp):
GCATAGTCATGAAGGAAGCAAATGAAAA
Found at i:96573952 original size:42 final size:42
Alignment explanation
Indices: 96573890--96574002 Score: 163
Period size: 42 Copynumber: 2.7 Consensus size: 42
96573880 TCGTTTTCTC
** * *
96573890 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
* * *
96573932 GATGCTATAGCCCAGCTATGGTCTTACACATATTCATATATT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
96573974 GATGCCATAGCCCAGCTATGGTCTTACAC
1 GATGCCATAGCCCAGCTATGGTCTTACAC
96574003 GAATCATATA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
Found at i:96574149 original size:31 final size:31
Alignment explanation
Indices: 96574114--96574292 Score: 306
Period size: 31 Copynumber: 5.8 Consensus size: 31
96574104 CTTGTTACTT
*
96574114 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
96574145 GTAGCCGGAGCTACCAATTTTCACTAATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
96574176 GTAGCCGGAGCTACCAATTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
96574207 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
96574238 GTAGCCGGAGCTACCACTTTT-ACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
96574268 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
96574293 TGTCATTTGT
Statistics
Matches: 142, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
30 29 0.20
31 113 0.80
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:96574373 original size:50 final size:50
Alignment explanation
Indices: 96574268--96574444 Score: 234
Period size: 50 Copynumber: 3.5 Consensus size: 50
96574258 TACTGATCAG
* * * * *
96574268 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCCTGATCAGATAGGT
1 GTAGCAGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
96574319 GTAGCAGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCAGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
96574369 GTAGCCGAAGCTA-CTACTTATCA-TCTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCAGAAGCTATC-ACTTATCACT-TTCATTTGTCCTTGATCAGATAAGT
96574419 GTAGCCA-AAGCTATCACTTATCACTT
1 GTAG-CAGAAGCTATCACTTATCACTT
96574445 ATTGCCATGG
Statistics
Matches: 112, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
49 2 0.02
50 84 0.75
51 26 0.23
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (50 bp):
GTAGCAGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:96578455 original size:92 final size:89
Alignment explanation
Indices: 96578320--96578562 Score: 224
Period size: 88 Copynumber: 2.7 Consensus size: 89
96578310 CAGTAGACTA
* * **
96578320 TTTAAGTATCCAATTGAGTGTAAAA-AAAAATCAGGGGCTTAATTGTTTTTTTTTTGAAAAAGTT
1 TTTAAGTACCCAATTGAGTGCAAAATAAAAA-C-GAAGCTTAATTGTTTTTTTTTT-AAAAAGTT
* *
96578384 TGAGAGTATTTTTGATACAATTTGAAAG
63 TAAGAGTATTTTTGAT-CAATTTAAAAG
* * ** *
96578412 TTTAAGTACCCAATTGAGTGCAAAATAAAAACTGAAGCCTAATTG--TCTTTTCAAAAAAATTTA
1 TTTAAGTACCCAATTGAGTGCAAAATAAAAAC-GAAGCTTAATTGTTTTTTTTTTAAAAAGTTTA
* * **
96578475 AGGGTCTTTTTGATGTATTTAAAAG
65 AGAGTATTTTTGATCAATTTAAAAG
* ** *
96578500 TTTAAGTACCAAAAGGAGTGCAAAATAAAAGC-AATGACTTAATTGTTTTTTTTTTAAAAAGTT
1 TTTAAGTACCCAATTGAGTGCAAAATAAAAACGAA-G-CTTAATTGTTTTTTTTTTAAAAAGTT
96578563 AATTTTTTTT
Statistics
Matches: 121, Mismatches: 25, Indels: 12
0.77 0.16 0.08
Matches are distributed among these distances:
86 2 0.02
87 1 0.01
88 43 0.36
89 20 0.17
90 17 0.14
92 33 0.27
93 5 0.04
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.37
Consensus pattern (89 bp):
TTTAAGTACCCAATTGAGTGCAAAATAAAAACGAAGCTTAATTGTTTTTTTTTTAAAAAGTTTAA
GAGTATTTTTGATCAATTTAAAAG
Found at i:96605305 original size:17 final size:19
Alignment explanation
Indices: 96605283--96605321 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 19
96605273 AGTTGAATTA
96605283 AAATTACG-AAATT-AAAT
1 AAATTACGAAAATTAAAAT
96605300 AAATTACGAAAATTAAAAT
1 AAATTACGAAAATTAAAAT
96605319 AAA
1 AAA
96605322 AATAAATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
18 5 0.25
19 7 0.35
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (19 bp):
AAATTACGAAAATTAAAAT
Found at i:96608158 original size:19 final size:18
Alignment explanation
Indices: 96608134--96608172 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
96608124 GAAATTTATG
96608134 AAATAAGTTTATAATATTA
1 AAATAAGTTTATAAT-TTA
96608153 AAATAAGTTTATAATTTA
1 AAATAAGTTTATAATTTA
96608171 AA
1 AA
96608173 TGTTTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (18 bp):
AAATAAGTTTATAATTTA
Found at i:96611956 original size:15 final size:15
Alignment explanation
Indices: 96611936--96611967 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
96611926 TTCAAAAATC
96611936 TGATATAGAACAATT
1 TGATATAGAACAATT
*
96611951 TGATATAGAACTATT
1 TGATATAGAACAATT
96611966 TG
1 TG
96611968 CTTCTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (15 bp):
TGATATAGAACAATT
Found at i:96616962 original size:30 final size:30
Alignment explanation
Indices: 96616926--96616985 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
96616916 CTATCATGTC
96616926 CTAAAATCTAAAACTGTTGATAATCAGTAA
1 CTAAAATCTAAAACTGTTGATAATCAGTAA
96616956 CTAAAATCTAAAACTGTTGATAATCAGTAA
1 CTAAAATCTAAAACTGTTGATAATCAGTAA
96616986 AGGAAATCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (30 bp):
CTAAAATCTAAAACTGTTGATAATCAGTAA
Found at i:96616993 original size:30 final size:30
Alignment explanation
Indices: 96616928--96616993 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
96616918 ATCATGTCCT
**
96616928 AAAATCTAAAACTGTTGATAATCAGTAACT
1 AAAATCTAAAACTGTTGATAATCAGTAAAG
96616958 AAAATCTAAAACTGTTGATAATCAGTAAAG
1 AAAATCTAAAACTGTTGATAATCAGTAAAG
*
96616988 GAAATC
1 AAAATC
96616994 ATTGCTTCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.27
Consensus pattern (30 bp):
AAAATCTAAAACTGTTGATAATCAGTAAAG
Found at i:96618251 original size:19 final size:20
Alignment explanation
Indices: 96618223--96618261 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
96618213 CTCCTCATAA
96618223 TTTAAAATAT-TAT-TTAAT
1 TTTAAAATATATATGTTAAT
96618241 TTTAGAAATATATATGTTAAT
1 TTTA-AAATATATATGTTAAT
96618262 ATTATTACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 6 0.33
20 3 0.17
21 5 0.28
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
TTTAAAATATATATGTTAAT
Found at i:96618624 original size:14 final size:15
Alignment explanation
Indices: 96618607--96618636 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
96618597 ATCATTTTGA
96618607 TTAAT-ATAAATATT
1 TTAATAATAAATATT
96618621 TTAATAATAAATATT
1 TTAATAATAAATATT
96618636 T
1 T
96618637 ATGATGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAATAATAAATATT
Found at i:96621823 original size:46 final size:46
Alignment explanation
Indices: 96621756--96621851 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
96621746 ATTGAACTCA
96621756 ACAACTAACAAGTGTAAAGAATAAAAATATTACAGTTACATGCATC
1 ACAACTAACAAGTGTAAAGAATAAAAATATTACAGTTACATGCATC
96621802 ACAACTAACAAGTGTAAAGAATAAAAATATTACAGTTACATGCATC
1 ACAACTAACAAGTGTAAAGAATAAAAATATTACAGTTACATGCATC
96621848 ACAA
1 ACAA
96621852 AATTCAAACG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.51, C:0.16, G:0.10, T:0.23
Consensus pattern (46 bp):
ACAACTAACAAGTGTAAAGAATAAAAATATTACAGTTACATGCATC
Found at i:96628243 original size:20 final size:19
Alignment explanation
Indices: 96628199--96628261 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
96628189 AAATTTTAAA
* *
96628199 ATTTTAACTTTATTTATATAT
1 ATTTTAAATTT-TTTA-AAAT
96628220 ATTTTAGAATTTTTTAAAAT
1 ATTTTA-AATTTTTTAAAAT
*
96628240 ATTTATAATTTTTTTAAAAT
1 ATTT-TAAATTTTTTAAAAT
96628260 AT
1 AT
96628262 AAATTTTGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
20 21 0.57
21 12 0.32
22 4 0.11
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (19 bp):
ATTTTAAATTTTTTAAAAT
Found at i:96628292 original size:19 final size:19
Alignment explanation
Indices: 96628264--96628306 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
96628254 TAAAATATAA
*
96628264 ATTTTGAAATTCTATAAA-T
1 ATTTTAAAATTCTA-AAATT
*
96628283 ATTTTAAAATTTTAAAATT
1 ATTTTAAAATTCTAAAATT
96628302 ATTTT
1 ATTTT
96628307 GAATTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
ATTTTAAAATTCTAAAATT
Found at i:96635848 original size:32 final size:32
Alignment explanation
Indices: 96635807--96635871 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
96635797 ACTATCTTAC
96635807 AAAGCTATAACAGTAGCAGATAATCAGAAACA
1 AAAGCTATAACAGTAGCAGATAATCAGAAACA
*
96635839 AAAGTTATAACAGTAGCAGATAATCAGAAACA
1 AAAGCTATAACAGTAGCAGATAATCAGAAACA
96635871 A
1 A
96635872 TCATTACATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.54, C:0.14, G:0.15, T:0.17
Consensus pattern (32 bp):
AAAGCTATAACAGTAGCAGATAATCAGAAACA
Found at i:96637579 original size:26 final size:27
Alignment explanation
Indices: 96637526--96637578 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
96637516 AACAATCATC
* *
96637526 GCATAGTCATGAATTAAGTACAGAAAA
1 GCATAGTCATGAATTAAGCAAAGAAAA
96637553 GCAT-GTCATGAATTAAGCAAATGAAA
1 GCATAGTCATGAATTAAGCAAA-GAAA
96637579 GAAAATTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (27 bp):
GCATAGTCATGAATTAAGCAAAGAAAA
Found at i:96638191 original size:43 final size:42
Alignment explanation
Indices: 96638093--96638191 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 42
96638083 TATTAGAAAA
* *
96638093 AAAACGCCGCTGAAGGTCAAGGCTTTTAGCGGCGTTTGTTGG
1 AAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTTCG
** *
96638135 AAAAGCGATGCTAAAGGTCAAGGCTTTTAGCGGCGCTTT-TTCT
1 AAAA-CGCCGCTAAAGGTCAAGGCTTTTAGCGGCG-TTTGTTCG
96638178 ACAAACGCCGCTAA
1 A-AAACGCCGCTAA
96638192 TTTTGGTAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 4 0.09
43 37 0.79
44 6 0.13
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (42 bp):
AAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTTCG
Found at i:96638279 original size:31 final size:31
Alignment explanation
Indices: 96638244--96638326 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
96638234 CTTCCTGCAT
* *
96638244 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
96638275 TAAAATGCAGCCAAAAACAGCAAATGTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
96638306 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
96638327 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.61, C:0.19, G:0.05, T:0.14
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:96639018 original size:12 final size:12
Alignment explanation
Indices: 96639001--96639027 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
96638991 AACATAACTT
96639001 AACATTATTTAA
1 AACATTATTTAA
96639013 AACATTATTTAA
1 AACATTATTTAA
96639025 AAC
1 AAC
96639028 TAATAATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (12 bp):
AACATTATTTAA
Found at i:96644219 original size:9 final size:9
Alignment explanation
Indices: 96644205--96644293 Score: 79
Period size: 9 Copynumber: 9.6 Consensus size: 9
96644195 ATGTATTAGT
96644205 TAAGTTATG
1 TAAGTTATG
96644214 TAAGTTGTTATG
1 TAA---GTTATG
*
96644226 TACGTTATG
1 TAAGTTATG
*
96644235 TGAGTTATG
1 TAAGTTATG
*
96644244 TAAATTATG
1 TAAGTTATG
*
96644253 TAAGTTATA
1 TAAGTTATG
* *
96644262 TGAGTTACG
1 TAAGTTATG
96644271 TAAGTTATG
1 TAAGTTATG
* *
96644280 TAATTTATT
1 TAAGTTATG
96644289 TAAGT
1 TAAGT
96644294 AATGATCAAT
Statistics
Matches: 62, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
9 54 0.87
12 8 0.13
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:96644259 original size:27 final size:27
Alignment explanation
Indices: 96644221--96644287 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
96644211 ATGTAAGTTG
* * *
96644221 TTATGTACGTTATGTGAGTTATGTAAA
1 TTATGTAAGTTATATGAGTTACGTAAA
*
96644248 TTATGTAAGTTATATGAGTTACGTAAG
1 TTATGTAAGTTATATGAGTTACGTAAA
*
96644275 TTATGTAATTTAT
1 TTATGTAAGTTAT
96644288 TTAAGTAATG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.46
Consensus pattern (27 bp):
TTATGTAAGTTATATGAGTTACGTAAA
Found at i:96644834 original size:241 final size:240
Alignment explanation
Indices: 96644412--96644845 Score: 832
Period size: 241 Copynumber: 1.8 Consensus size: 240
96644402 TGAATATAGT
96644412 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
96644477 TCGATATAAGGCAACCCGTCAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
66 TCGATATAAGGCAACCCGTCAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
*
96644542 TGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
131 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
96644607 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
96644652 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
*
96644717 TCGATATAAGGCAACCCGTCAAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTC-AGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
96644782 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
130 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
96644846 ATTAATTCAT
Statistics
Matches: 190, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
240 84 0.44
241 106 0.56
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (240 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGGCAACCCGTCAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:96648236 original size:14 final size:15
Alignment explanation
Indices: 96648212--96648241 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
96648202 CACAAACTTC
96648212 AGAATTTATGTATTT
1 AGAATTTATGTATTT
96648227 AGAA-TTATGTATTT
1 AGAATTTATGTATTT
96648241 A
1 A
96648242 TATAAACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
AGAATTTATGTATTT
Done.