Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 329 of 335
Found at i:96648332 original size:2 final size:2
Alignment explanation
Indices: 96648327--96648357 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
96648317 ACACGGATAA
96648327 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
96648358 ACTCCTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:96650438 original size:43 final size:41
Alignment explanation
Indices: 96650376--96650461 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 41
96650366 GATAACAAAC
* * *
96650376 CCGGCCCATACCATTAACTTAATATATATACTATACCATTGAA
1 CCGGCCCAAACCATAAACTTAA-A-ACATACTATACCATTGAA
* * *
96650419 CCGGCCTAAACCATAAACTTAAAACATATTCTACCATTGAA
1 CCGGCCCAAACCATAAACTTAAAACATACTATACCATTGAA
96650460 CC
1 CC
96650462 CTAAACCATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
41 17 0.46
42 1 0.03
43 19 0.51
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.27
Consensus pattern (41 bp):
CCGGCCCAAACCATAAACTTAAAACATACTATACCATTGAA
Found at i:96650688 original size:14 final size:14
Alignment explanation
Indices: 96650677--96650710 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
96650667 AAAATTTAGG
*
96650677 GTTTAAGGTTTAAA
1 GTTTAAGATTTAAA
96650691 GTTTAAGATTTAAGA
1 GTTTAAGATTTAA-A
96650706 GTTTA
1 GTTTA
96650711 CAGAAAGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (14 bp):
GTTTAAGATTTAAA
Found at i:96650702 original size:21 final size:22
Alignment explanation
Indices: 96650664--96650710 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
96650654 TGTTTTATGT
* *
96650664 TTTAAAATTTAGGGTTTAAG-G
1 TTTAAAATTTAAGATTTAAGAG
*
96650685 TTTAAAGTTTAAGATTTAAGAG
1 TTTAAAATTTAAGATTTAAGAG
96650707 TTTA
1 TTTA
96650711 CAGAAAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.19, T:0.45
Consensus pattern (22 bp):
TTTAAAATTTAAGATTTAAGAG
Found at i:96651045 original size:41 final size:40
Alignment explanation
Indices: 96651000--96651324 Score: 357
Period size: 41 Copynumber: 8.0 Consensus size: 40
96650990 AACTTTTTGC
* * *
96651000 GGCGTTTGGACCAAAAACGCCGCTATTAATCAGTTTTTAGT
1 GGCGTTTGGA-TAAAAACGCCGCAATTGATCAGTTTTTAGT
* * *
96651041 GGCGTTTTGGATAAAAACGCCACAATTGATCACTTTTTTGT
1 GGCG-TTTGGATAAAAACGCCGCAATTGATCAGTTTTTAGT
** * *
96651082 GGCGTTTTTATCCAAAACGCCACAATTGATCAGTTTTTAGT
1 GGCGTTTGGAT-AAAAACGCCGCAATTGATCAGTTTTTAGT
*
96651123 GGCGTTTTGGATAAAAACGCCACAATTGATCAGTTTTTAGT
1 GGCG-TTTGGATAAAAACGCCGCAATTGATCAGTTTTTAGT
96651164 GGCGTTTGGGATAAAAACGCCGCAATTGATCAGTTTTTAGT
1 GGCGTTT-GGATAAAAACGCCGCAATTGATCAGTTTTTAGT
* * *
96651205 GGCGTTTGGGATTAAAACGCCGCTATTGATCAGCTTTTAGT
1 GGCGTTT-GGATAAAAACGCCGCAATTGATCAGTTTTTAGT
* * *
96651246 GGCGTTTGG-TGAAAAACGCCGCTATTAACCTA-TTTTTAGT
1 GGCGTTTGGAT-AAAAACGCCGCAATTGATC-AGTTTTTAGT
* ** * *
96651286 GGTGTTTTGGCCAAAAACGCCGCTATTGACCAGTTTTTA
1 GGCG-TTTGGATAAAAACGCCGCAATTGATCAGTTTTTA
96651325 AACGCCGCTA
Statistics
Matches: 250, Mismatches: 25, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.00
40 37 0.15
41 201 0.80
42 11 0.04
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (40 bp):
GGCGTTTGGATAAAAACGCCGCAATTGATCAGTTTTTAGT
Found at i:96651222 original size:123 final size:122
Alignment explanation
Indices: 96651012--96651324 Score: 398
Period size: 123 Copynumber: 2.6 Consensus size: 122
96651002 CGTTTGGACC
* *
96651012 AAAAACGCCGCTATTAATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCACTTT
1 AAAAACGCCGCTATTAATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCAATTGATCAGTTT
* ** *
96651077 TTTGTGGCGTTTTTATCCAAAACGCCACAATTGATCAGTTTTTAGTGGCGTTTTGGAT-
66 TTAGTGGCGTTTGGATCCAAAACGCCACAATTGATCAGCTTTTAGTGGCG-TTTGG-TG
* * * *
96651135 AAAAACGCCACAATTGATCAGTTTTTAGTGGCGTTTGGGATAAAAACGCCGCAATTGATCAGTTT
1 AAAAACGCCGCTATTAATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCAATTGATCAGTTT
* * *
96651200 TTAGTGGCGTTTGGGAT-TAAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTGGTG
66 TTAGTGGCGTTT-GGATCCAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTGGTG
* * ** * *
96651257 AAAAACGCCGCTATTAACCTA-TTTTTAGTGGTGTTTTGGCCAAAAACGCCGCTATTGACCAGTT
1 AAAAACGCCGCTATTAATC-AGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCAATTGATCAGTT
96651321 TTTA
65 TTTA
96651325 AACGCCGCTA
Statistics
Matches: 164, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
121 1 0.01
122 61 0.37
123 100 0.61
124 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (122 bp):
AAAAACGCCGCTATTAATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCAATTGATCAGTTT
TTAGTGGCGTTTGGATCCAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTGGTG
Found at i:96660507 original size:23 final size:23
Alignment explanation
Indices: 96660477--96660524 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
96660467 ATTTTACAGC
96660477 TTAGATACTAGCACAAGTAATGT
1 TTAGATACTAGCACAAGTAATGT
96660500 TTAGATACTAGCACAAGTAATGT
1 TTAGATACTAGCACAAGTAATGT
96660523 TT
1 TT
96660525 TGTTTTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (23 bp):
TTAGATACTAGCACAAGTAATGT
Found at i:96668686 original size:19 final size:19
Alignment explanation
Indices: 96668662--96668702 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
96668652 CAACCCATTA
96668662 TTTAATATAATATTTTTAT
1 TTTAATATAATATTTTTAT
*
96668681 TTTAATGTAATATTTTTAT
1 TTTAATATAATATTTTTAT
96668700 TTT
1 TTT
96668703 TTTAGATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTAATATAATATTTTTAT
Found at i:96669003 original size:35 final size:35
Alignment explanation
Indices: 96668964--96669034 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
96668954 CCTCCCTCCC
96668964 ATGTTAGTTTCTCTTCTTTGCTTCCAAGGTTTCAG
1 ATGTTAGTTTCTCTTCTTTGCTTCCAAGGTTTCAG
*
96668999 ATGTTAGTTTCTCTTCTTTTCTTCCAAGGTTTCAG
1 ATGTTAGTTTCTCTTCTTTGCTTCCAAGGTTTCAG
96669034 A
1 A
96669035 CTTCGATGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.49
Consensus pattern (35 bp):
ATGTTAGTTTCTCTTCTTTGCTTCCAAGGTTTCAG
Found at i:96673157 original size:20 final size:21
Alignment explanation
Indices: 96673134--96673181 Score: 73
Period size: 19 Copynumber: 2.4 Consensus size: 21
96673124 TAAAATATAA
*
96673134 ATTTTGAAATTTTTATAAA-T
1 ATTTTGAAATTTTTAAAAATT
96673154 ATTTT-AAATTTTTAAAAATT
1 ATTTTGAAATTTTTAAAAATT
96673174 ATTTTGAA
1 ATTTTGAA
96673182 TTTATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 12 0.48
20 11 0.44
21 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (21 bp):
ATTTTGAAATTTTTAAAAATT
Found at i:96673164 original size:19 final size:19
Alignment explanation
Indices: 96673129--96673184 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
96673119 TTGTCTAAAA
*
96673129 TATAAAT-TTTGAAATTTT
1 TATAAATATTTTAAATTTT
96673147 TATAAATATTTTAAATTTT
1 TATAAATATTTTAAATTTT
* *
96673166 TAAAAATTATTTTGAATTT
1 TATAAA-TATTTTAAATTT
96673185 ATTTTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 7 0.21
19 15 0.45
20 11 0.33
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (19 bp):
TATAAATATTTTAAATTTT
Found at i:96673183 original size:20 final size:19
Alignment explanation
Indices: 96673134--96673184 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
96673124 TAAAATATAA
*
96673134 ATTTTGAAATTTTTATAAAT
1 ATTTTG-AATTTTTAAAAAT
*
96673154 ATTTTAAATTTTTAAAAATT
1 ATTTTGAATTTTTAAAAA-T
96673174 ATTTTGAATTT
1 ATTTTGAATTT
96673185 ATTTTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAAAT
Found at i:96676991 original size:46 final size:46
Alignment explanation
Indices: 96676924--96677096 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
96676914 TAACCCGCCG
96676924 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
*
96676970 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCC
* * ** * ** *
96677019 -TCA-CGAACTCGGGTTCAACTCAACGAGTTCGAACATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
96677063 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
96677097 ATGCCCAAAA
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.57
47 24 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
Found at i:96677058 original size:93 final size:93
Alignment explanation
Indices: 96676930--96677101 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
96676920 GCCGATAAGT
** *
96676930 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96676995 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
** *
96677023 GAACTCGGGTTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96677088 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
96677102 CAAAAATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:96679993 original size:41 final size:41
Alignment explanation
Indices: 96679948--96680030 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
96679938 ATTAGTGATC
96679948 AAATTGTAATTTTTTTAGTTAAGTGATTAAAACGATAACTT
1 AAATTGTAATTTTTTTAGTTAAGTGATTAAAACGATAACTT
96679989 AAATTGTAATTTTTTTAGTTAAGTGATTAAAACGATAACTT
1 AAATTGTAATTTTTTTAGTTAAGTGATTAAAACGATAACTT
96680030 A
1 A
96680031 CCTATAGTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (41 bp):
AAATTGTAATTTTTTTAGTTAAGTGATTAAAACGATAACTT
Found at i:96681691 original size:41 final size:39
Alignment explanation
Indices: 96681626--96681709 Score: 107
Period size: 41 Copynumber: 2.1 Consensus size: 39
96681616 TTTTAAGGTT
96681626 TTAAAAATATATATAACTTATTTTTTAAAAAATTAAAATTA
1 TTAAAAATATATATAACTTATTTTTT-AAAAATTAAAA-TA
* * *
96681667 TTAAAAATATTTATTA-TTATTTTTTTAAAATTTAAAATA
1 TTAAAAATATATATAACTTA-TTTTTTAAAAATTAAAATA
96681706 TTAA
1 TTAA
96681710 TTAAATGCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
39 6 0.15
40 13 0.33
41 20 0.51
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (39 bp):
TTAAAAATATATATAACTTATTTTTTAAAAATTAAAATA
Found at i:96681708 original size:39 final size:41
Alignment explanation
Indices: 96681626--96681709 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 41
96681616 TTTTAAGGTT
96681626 TTAAAAATATATATAACTTATTTTTTAAAAAATTAAAATTA
1 TTAAAAATATATATAACTTATTTTTTAAAAAATTAAAATTA
* * * *
96681667 TTAAAAATATTTATTA-TTATTTTTTTAAAATTTAAAA-TA
1 TTAAAAATATATATAACTTATTTTTTAAAAAATTAAAATTA
96681706 TTAA
1 TTAA
96681710 TTAAATGCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 6 0.15
40 19 0.49
41 14 0.36
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (41 bp):
TTAAAAATATATATAACTTATTTTTTAAAAAATTAAAATTA
Found at i:96682442 original size:27 final size:27
Alignment explanation
Indices: 96682411--96682463 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
96682401 ATACTAAAAC
96682411 TGAAAGAGTGAAATACGAGCTCCAGAG
1 TGAAAGAGTGAAATACGAGCTCCAGAG
96682438 TGAAAGAGTGAAATACGAGCTCCAGA
1 TGAAAGAGTGAAATACGAGCTCCAGA
96682464 ATCACTGTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.28, T:0.15
Consensus pattern (27 bp):
TGAAAGAGTGAAATACGAGCTCCAGAG
Found at i:96683953 original size:2 final size:2
Alignment explanation
Indices: 96683948--96683990 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
96683938 GGTTTAAAAA
96683948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96683990 A
1 A
96683991 AACATTTAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:96684278 original size:27 final size:27
Alignment explanation
Indices: 96684248--96684302 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
96684238 AAGTAATTGT
*
96684248 ACGAATAAAAACAAATAAAATTATTAA
1 ACGAATAAAAACAAATAAAAATATTAA
* * *
96684275 ACGAATCAACACATATAAAAATATTAA
1 ACGAATAAAAACAAATAAAAATATTAA
96684302 A
1 A
96684303 TGTATTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.64, C:0.11, G:0.04, T:0.22
Consensus pattern (27 bp):
ACGAATAAAAACAAATAAAAATATTAA
Found at i:96688758 original size:48 final size:48
Alignment explanation
Indices: 96688704--96688799 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
96688694 TGGTATTAGC
*
96688704 TGATTCACATCCAAAGTGAAGGTTTGATCATTCATGGCTATTGTTGCT
1 TGATTCACATCCAAAGTGAAGGTTCGATCATTCATGGCTATTGTTGCT
96688752 TGATTCACATCCAAAGTGAAGGTTCGATCATTCATGGCTATTGTTGCT
1 TGATTCACATCCAAAGTGAAGGTTCGATCATTCATGGCTATTGTTGCT
96688800 AATAGTTGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (48 bp):
TGATTCACATCCAAAGTGAAGGTTCGATCATTCATGGCTATTGTTGCT
Found at i:96691723 original size:2 final size:2
Alignment explanation
Indices: 96691718--96691744 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
96691708 GAATATATGA
96691718 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
96691745 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:96694248 original size:16 final size:15
Alignment explanation
Indices: 96694227--96694274 Score: 78
Period size: 16 Copynumber: 3.1 Consensus size: 15
96694217 GATGTGAATA
96694227 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
96694243 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
96694258 ATCAAAATATTAAAAT
1 AT-AAAATATTAAAAT
96694274 A
1 A
96694275 ATAATAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:96694250 original size:24 final size:24
Alignment explanation
Indices: 96694223--96694278 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
96694213 TAATGATGTG
*
96694223 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
*
96694247 AATATTAAAATATCAAAATATTAA
1 AATAATAAAATATCAAAATATTAA
96694271 AATAATAA
1 AATAATAA
96694279 TAATTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 6 0.21
24 22 0.79
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:96694257 original size:8 final size:8
Alignment explanation
Indices: 96694223--96694274 Score: 70
Period size: 8 Copynumber: 6.5 Consensus size: 8
96694213 TAATGATGTG
*
96694223 AATAATAA
1 AATATTAA
96694231 AATATATAA
1 AATAT-TAA
96694240 AATA-TAA
1 AATATTAA
96694247 AATATTAA
1 AATATTAA
*
96694255 AATATCAA
1 AATATTAA
96694263 AATATTAA
1 AATATTAA
96694271 AATA
1 AATA
96694275 ATAATAATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
7 7 0.18
8 25 0.64
9 7 0.18
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:96694464 original size:25 final size:25
Alignment explanation
Indices: 96694436--96694484 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
96694426 CGTGATAATA
**
96694436 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATACATACATAATATAGTG
96694461 TTAAAAATACATACATAATATAGT
1 TTAAAAATACATACATAATATAGT
96694485 TAAGATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATACATACATAATATAGTG
Found at i:96694499 original size:22 final size:23
Alignment explanation
Indices: 96694436--96694505 Score: 79
Period size: 25 Copynumber: 3.0 Consensus size: 23
96694426 CGTGATAATA
*
96694436 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATA--G
*
96694461 TTAAAAATACATACATAATATAG
1 TTAAAAATATATACATAATATAG
* *
96694484 TT-AAGATATATACATAAGATAG
1 TTAAAAATATATACATAATATAG
96694506 CATGTAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
22 17 0.43
23 3 0.08
25 20 0.50
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (23 bp):
TTAAAAATATATACATAATATAG
Found at i:96694556 original size:25 final size:25
Alignment explanation
Indices: 96694527--96694658 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
96694517 ATATATATAT
*
96694527 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * *
96694552 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAATATTAA-AG
* *
96694577 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATATTAAAG
* *
96694601 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
*
96694623 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
96694646 AAATATA-ATAATA
1 ATATATACATAATA
96694659 ACAAAAAGGA
Statistics
Matches: 85, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 24 0.28
24 10 0.12
25 33 0.39
26 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:96695250 original size:30 final size:30
Alignment explanation
Indices: 96695157--96695301 Score: 177
Period size: 30 Copynumber: 4.8 Consensus size: 30
96695147 TAGGTACAAG
*
96695157 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGT
* ** *
96695187 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGT
96695217 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
* *
96695247 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
* *
96695277 TGGTGGTGGAAAAGGTGTGCCTAGT
1 TGGTGGTGGAGAAGGTGTGGCTAGT
96695302 TGAGAAAAGT
Statistics
Matches: 101, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 2 0.02
30 99 0.98
ACGTcount: A:0.21, C:0.05, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
Found at i:96696608 original size:19 final size:20
Alignment explanation
Indices: 96696586--96696624 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
96696576 AAAGAAACCG
96696586 AAGCAAAAATTTGAA-AAGA
1 AAGCAAAAATTTGAACAAGA
*
96696605 AAGCAAGAATTTGAACAAGA
1 AAGCAAAAATTTGAACAAGA
96696625 TGATTGAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.59, C:0.08, G:0.18, T:0.15
Consensus pattern (20 bp):
AAGCAAAAATTTGAACAAGA
Found at i:96699579 original size:67 final size:66
Alignment explanation
Indices: 96699427--96699580 Score: 161
Period size: 66 Copynumber: 2.3 Consensus size: 66
96699417 CAATTTTTAT
* * * * * *
96699427 TTTTTG-AAATATGCCTTATCTCCATGGAGAGCGTCTAAATGGTTCATGAAGGGCTCAATTGTTG
1 TTTTTGTAAATATGCCTCACCTCCACGAAGAGCGTCTAAATGGTTCATGAAGGGCTCAACTGTCG
96699491 A
66 A
** * * *
96699492 TTTTTGGT-GTTATGCCTCACCTCTACGAAGAGC-TACTAAATGGTTCATGGAGGGTCTCGACTG
1 TTTTT-GTAAATATGCCTCACCTCCACGAAGAGCGT-CTAAATGGTTCATGAAGGG-CTCAACTG
96699555 TCGA
63 TCGA
96699559 TTTTTGTAAATATGCCTCACCT
1 TTTTTGTAAATATGCCTCACCT
96699581 TTGTGGAAAA
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
65 6 0.08
66 39 0.55
67 26 0.37
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (66 bp):
TTTTTGTAAATATGCCTCACCTCCACGAAGAGCGTCTAAATGGTTCATGAAGGGCTCAACTGTCG
A
Found at i:96701064 original size:12 final size:12
Alignment explanation
Indices: 96701034--96701066 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
96701024 CTAAATTAAT
96701034 ATAAAAT-AAAA
1 ATAAAATAAAAA
96701045 ATAAAAATAAAAA
1 AT-AAAATAAAAA
96701058 ATAAAATAA
1 ATAAAATAA
96701067 GATTCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 2 0.10
12 12 0.60
13 6 0.30
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (12 bp):
ATAAAATAAAAA
Found at i:96704187 original size:93 final size:93
Alignment explanation
Indices: 96704075--96704246 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
96704065 CGCCCATAAG
*
96704075 CGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
96704139 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
96704168 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
96704233 ACGAGCTCGGATGC
66 ACGAGCTCGGATGC
96704247 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:96704243 original size:46 final size:47
Alignment explanation
Indices: 96704068--96704243 Score: 211
Period size: 46 Copynumber: 3.8 Consensus size: 47
96704058 TGTAACCCGC
*
96704068 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
* * *
96704114 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-A-TTCGCAT
* *
96704164 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
*
96704207 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
96704244 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.54
47 31 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
Found at i:96706986 original size:21 final size:21
Alignment explanation
Indices: 96706960--96707033 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 21
96706950 CCCAACCCAT
* *
96706960 GCATATAATGAGCATATCATA
1 GCATATCATGTGCATATCATA
* *
96706981 GCATATCACGTGCATCTCATA
1 GCATATCATGTGCATATCATA
* *
96707002 ACATATCATGTGCATATTAT-
1 GCATATCATGTGCATATCATA
96707022 GTCATATCATGT
1 G-CATATCATGT
96707034 ATAACAATAT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.34
Consensus pattern (21 bp):
GCATATCATGTGCATATCATA
Found at i:96707027 original size:10 final size:11
Alignment explanation
Indices: 96706959--96707033 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
96706949 ACCCAACCCA
*
96706959 TGCATATAATG
1 TGCATATCATG
*
96706970 AGCATATCAT-
1 TGCATATCATG
* *
96706980 AGCATATCACG
1 TGCATATCATG
*
96706991 TGCATCTCAT-
1 TGCATATCATG
**
96707001 AACATATCATG
1 TGCATATCATG
*
96707012 TGCATATTATG
1 TGCATATCATG
96707023 T-CATATCATG
1 TGCATATCATG
96707033 T
1 T
96707034 ATAACAATAT
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
10 25 0.51
11 24 0.49
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (11 bp):
TGCATATCATG
Found at i:96707107 original size:25 final size:25
Alignment explanation
Indices: 96707070--96707118 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
96707060 GTAATTAAAC
* * *
96707070 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCATAATAGTCATTTTTA
96707095 CCTAGGGGCATAATAGTCATTTTT
1 CCTAGGGGCATAATAGTCATTTTT
96707119 CATATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.41
Consensus pattern (25 bp):
CCTAGGGGCATAATAGTCATTTTTA
Found at i:96709038 original size:4 final size:4
Alignment explanation
Indices: 96708986--96709019 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
96708976 AACTTGAGCC
*
96708986 TTTA TTTA TTTA TTCA TTTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA T
96709020 GTACACAAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 24 0.89
5 3 0.11
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:96709048 original size:19 final size:20
Alignment explanation
Indices: 96709010--96709057 Score: 71
Period size: 19 Copynumber: 2.4 Consensus size: 20
96709000 CATTTTATTT
96709010 ATTTATTTATGTACACAAGCA
1 ATTTATTTATGTA-ACAAGCA
96709031 ATTTATTTATGT-ACAAGCA
1 ATTTATTTATGTAACAAGCA
*
96709050 AATTATTT
1 ATTTATTT
96709058 TTCAAACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 14 0.54
21 12 0.46
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (20 bp):
ATTTATTTATGTAACAAGCA
Found at i:96710841 original size:20 final size:21
Alignment explanation
Indices: 96710816--96710859 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
96710806 ACCTTTGGTG
96710816 TTTGATTTTTC-TTTTTCCCT
1 TTTGATTTTTCTTTTTTCCCT
96710836 TTTGATTTTTCTTTTTTCCCT
1 TTTGATTTTTCTTTTTTCCCT
96710857 TTT
1 TTT
96710860 TTTCTTCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.05, C:0.18, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTGATTTTTCTTTTTTCCCT
Found at i:96710870 original size:21 final size:20
Alignment explanation
Indices: 96710820--96710873 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 20
96710810 TTGGTGTTTG
96710820 ATTTTTC-TTTTTCCCTTTT
1 ATTTTTCTTTTTTCCCTTTT
96710839 GATTTTTCTTTTTTCCCTTTT
1 -ATTTTTCTTTTTTCCCTTTT
96710860 -TTTCTTCCTTTTTT
1 ATTT-TT-CTTTTTT
96710874 TTCTTATGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.10
20 9 0.29
21 19 0.61
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (20 bp):
ATTTTTCTTTTTTCCCTTTT
Found at i:96724351 original size:10 final size:9
Alignment explanation
Indices: 96724328--96724359 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
96724318 AAATGAAATT
96724328 ATTTTTAAA
1 ATTTTTAAA
96724337 ATTTTTAAA
1 ATTTTTAAA
96724346 ATTTTTAAA
1 ATTTTTAAA
96724355 CATTT
1 -ATTT
96724360 AAATTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:96729680 original size:20 final size:22
Alignment explanation
Indices: 96729655--96729697 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
96729645 TTATTTGAAT
96729655 TATTAA-ATAT-AATTCAAATA
1 TATTAACATATAAATTCAAATA
*
96729675 TATTAACTTATAAATTCAAATA
1 TATTAACATATAAATTCAAATA
96729697 T
1 T
96729698 TATAATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 3 0.15
22 11 0.55
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (22 bp):
TATTAACATATAAATTCAAATA
Found at i:96729706 original size:20 final size:20
Alignment explanation
Indices: 96729655--96729711 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 20
96729645 TTATTTGAAT
96729655 TATTA-AATAT-AATTCAAA
1 TATTATAATATAAATTCAAA
96729673 TA-TATTAACTTATAAATTCAAA
1 TATTA-TAA--TATAAATTCAAA
96729695 TATTATAATATACAATT
1 TATTATAATATA-AATT
96729712 TTCATTATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
17 2 0.06
18 2 0.06
19 2 0.06
20 4 0.12
21 7 0.22
22 13 0.41
23 2 0.06
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (20 bp):
TATTATAATATAAATTCAAA
Found at i:96729875 original size:36 final size:36
Alignment explanation
Indices: 96729835--96729907 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
96729825 AAAATAAATG
* * *
96729835 TTATTTTATACACTAAAA-GATAATTATAGTCCAAGT
1 TTATTTTATAAACTAAAATG-TAATTATACTACAAGT
*
96729871 TTATTTTATAAATTAAAATGTAATTATACTACAAGT
1 TTATTTTATAAACTAAAATGTAATTATACTACAAGT
96729907 T
1 T
96729908 CTATAATATG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 31 0.97
37 1 0.03
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (36 bp):
TTATTTTATAAACTAAAATGTAATTATACTACAAGT
Found at i:96734099 original size:21 final size:21
Alignment explanation
Indices: 96734073--96734113 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
96734063 ATCTGCTCAA
* *
96734073 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
96734094 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
96734114 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:96738698 original size:26 final size:28
Alignment explanation
Indices: 96738661--96738713 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
96738651 AACAATCATT
*
96738661 GCATAGTCATGAATGAAGCAAA-GAAAA
1 GCATAGTCATGAAGGAAGCAAATGAAAA
*
96738688 GCAT-GTCATGAAGGAAGTAAATGAAA
1 GCATAGTCATGAAGGAAGCAAATGAAA
96738714 GAAAATTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.49, C:0.09, G:0.25, T:0.17
Consensus pattern (28 bp):
GCATAGTCATGAAGGAAGCAAATGAAAA
Found at i:96742063 original size:3 final size:3
Alignment explanation
Indices: 96742052--96742100 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
96742042 TAACAACAAC
*
96742052 GAT GTT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
96742100 G
1 G
96742101 GGAAAGTATG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (3 bp):
GAT
Found at i:96744912 original size:44 final size:44
Alignment explanation
Indices: 96744808--96744894 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
96744798 ATAGCTAATT
* *
96744808 ACATATAATTGATAAAAAATATATATGTGATTTATAGTTTGTAA
1 ACATATAAATGATAAAAAAAATATATGTGATTTATAGTTTGTAA
96744852 ACATATAAATGATAAAAAAAATATATGTGATTTATAGTTTGTA
1 ACATATAAATGATAAAAAAAATATATGTGATTTATAGTTTGTA
96744895 CATATATGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.39
Consensus pattern (44 bp):
ACATATAAATGATAAAAAAAATATATGTGATTTATAGTTTGTAA
Found at i:96754178 original size:39 final size:39
Alignment explanation
Indices: 96754096--96754246 Score: 248
Period size: 39 Copynumber: 3.8 Consensus size: 39
96754086 TGGTAACCCA
* * * *
96754096 CACAAATGCCTTCGGGACTTAACCTGGATATCATAACTCG
1 CACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCG
*
96754136 CACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCG
96754175 CACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCG
96754214 CACAATTGCCTTCGGGCTTAGCCCGGATATCAT
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCAT
96754247 TCGAACATTC
Statistics
Matches: 105, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 90 0.86
40 15 0.14
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.26
Consensus pattern (39 bp):
CACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCG
Found at i:96761222 original size:22 final size:22
Alignment explanation
Indices: 96761197--96761248 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
96761187 GGTATACTGA
96761197 TCATATGATCGTTTCGTTACTT
1 TCATATGATCGTTTCGTTACTT
96761219 TCATATGATCGTTTCGTTACTT
1 TCATATGATCGTTTCGTTACTT
96761241 TCATATGA
1 TCATATGA
96761249 AAATAGACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.48
Consensus pattern (22 bp):
TCATATGATCGTTTCGTTACTT
Found at i:96762175 original size:39 final size:39
Alignment explanation
Indices: 96762132--96762283 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
96762122 TATGGTAACC
* * * * *
96762132 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
96762171 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
96762210 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
96762249 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAT
96762284 TCAACATTCA
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:96764035 original size:67 final size:66
Alignment explanation
Indices: 96763925--96764213 Score: 213
Period size: 67 Copynumber: 4.3 Consensus size: 66
96763915 TGTCACATAT
* * * * *
96763925 ATTTTTGGAGATATATGTCTCACTTTTGTGGAGAGCCACTAAACGATTCATGGAGGGGCTCAACT
1 ATTTTTGGAG--ATATGCCTCACCTCTGTGGAGAG-TATTAAACGATTCATGGAGGGGCTCAACT
96763990 ATCA
63 ATCA
** * * * *
96763994 ATTTTTGGAGATATGCCTCTTCTCTGTGGAGAGTGATTAAAC-AGTTCATGGA-GAGCTCGATTT
1 ATTTTTGGAGATATGCCTCACCTCTGTGGAGAGT-ATTAAACGA-TTCATGGAGGGGCTCAACTA
96764057 TCA
64 TCA
* * ** * * * * * * * *
96764060 ATTTTTGGTGTTATGCCTCACCTCTACGTAGGGCTACTGAATGATTCATAGAGGGTCCCAACTAT
1 ATTTTTGGAGATATGCCTCACCTCTGTGGAGAG-TATTAAACGATTCATGGAGGGGCTCAACTAT
96764125 CA
65 CA
* * * * * **
96764127 GTTTTTGGAGTTATGTCTCACCTCTGTGGAGAGCCATTAAACGGTTCATGGAGGGGCTTGACTAT
1 ATTTTTGGAGATATGCCTCACCTCTGTGGAGAG-TATTAAACGATTCATGGAGGGGCTCAACTAT
96764192 CA
65 CA
* *
96764194 ATTTTTAGAGATATGTCTCA
1 ATTTTTGGAGATATGCCTCA
96764214 TCTTCGTGAA
Statistics
Matches: 166, Mismatches: 49, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
66 47 0.28
67 109 0.66
69 10 0.06
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (66 bp):
ATTTTTGGAGATATGCCTCACCTCTGTGGAGAGTATTAAACGATTCATGGAGGGGCTCAACTATC
A
Found at i:96764240 original size:67 final size:67
Alignment explanation
Indices: 96763937--96764245 Score: 181
Period size: 67 Copynumber: 4.6 Consensus size: 67
96763927 TTTTGGAGAT
* * * * * ** *
96763937 ATATGTCTCACTTTTGTGGAGAGCCACTAAACGATTCATGGAGGGGCTCAACTATCAATTTTTGG
1 ATATGTCTCACCTCTGTGAAGAGCCATTAAACGGTTCATGGAGGGGCTTGACTATCAATTTTTAG
96764002 AG
66 AG
* ** * ** * * * * * *
96764004 ATATGCCTCTTCTCTGTGGAGAGTGATTAAACAGTTCATGGA-GAGCTCGATTTTCAATTTTTGG
1 ATATGTCTCACCTCTGTGAAGAGCCATTAAACGGTTCATGGAGGGGCTTGACTATCAATTTTTAG
*
96764068 TG
66 AG
* * ** * * * * * * * * * *** * *
96764070 TTATGCCTCACCTCTACGTAGGGCTACTGAATGATTCATAGAGGGTCCCAACTATCAGTTTTTGG
1 ATATGTCTCACCTCTGTGAAGAGCCATTAAACGGTTCATGGAGGGGCTTGACTATCAATTTTTAG
96764135 AG
66 AG
* *
96764137 TTATGTCTCACCTCTGTGGAGAGCCATTAAACGGTTCATGGAGGGGCTTGACTATCAATTTTTAG
1 ATATGTCTCACCTCTGTGAAGAGCCATTAAACGGTTCATGGAGGGGCTTGACTATCAATTTTTAG
96764202 AG
66 AG
* * * * *
96764204 ATATGTCTCATCT-TCGTGAATAGTCATTGAATGGTTCATGGA
1 ATATGTCTCACCTCT-GTGAAGAGCCATTAAACGGTTCATGGA
96764246 ATGACCCAAA
Statistics
Matches: 178, Mismatches: 62, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
66 47 0.26
67 131 0.74
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (67 bp):
ATATGTCTCACCTCTGTGAAGAGCCATTAAACGGTTCATGGAGGGGCTTGACTATCAATTTTTAG
AG
Found at i:96764580 original size:16 final size:16
Alignment explanation
Indices: 96764561--96764598 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
96764551 AATTAAAATT
96764561 TTTATAAATATGTTAA
1 TTTATAAATATGTTAA
* *
96764577 TTTATAATTATTTTAA
1 TTTATAAATATGTTAA
96764593 TTTATA
1 TTTATA
96764599 TTTGTGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TTTATAAATATGTTAA
Found at i:96765035 original size:91 final size:90
Alignment explanation
Indices: 96764880--96765153 Score: 293
Period size: 91 Copynumber: 3.0 Consensus size: 90
96764870 TGTAAAAAGT
* ** * * * * *
96764880 CCTCAAACTTTTAAAAAAAAAAGTAATTAAACCCTTGCTTTTATTTTGCATTCACTTGGATACTT
1 CCTCAAAATTTTTCAAAAAAAAGTAATTAAGCCC-TGATTTTATTTTGCACTCAATTGGGTACTT
*
96764945 GAACTTTTAAAATACATCAAAAAAGC
65 GAACTTTTAAAATACATCAAAAAGGC
* *
96764971 CCTC-AAATATTTTCAAAAAAAAGCAATTAAGCCACTGGTTTTATTTTGCACTCAATTGGGTACT
1 CCTCAAAAT-TTTTCAAAAAAAAGTAATTAAGCC-CTGATTTTATTTTGCACTCAATTGGGTACT
*
96765035 TGAACTTTCAAAATACATCAAAAAGGC
64 TGAACTTTTAAAATACATCAAAAAGGC
* * * * * *
96765062 CCTCAAAATTTTTC-AAAAAAAGTACTTAGGCCCCTAATTTTTTTTTTCACTTAATTGGGTACTT
1 CCTCAAAATTTTTCAAAAAAAAGTAATTAAG-CCCTGATTTTATTTTGCACTCAATTGGGTACTT
* * * *
96765126 CAAC-TGTCAGATACATCAAAAAGGC
65 GAACTTTTAAAATACATCAAAAAGGC
96765151 CCT
1 CCT
96765154 TTGACCGTTA
Statistics
Matches: 155, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
89 20 0.13
90 45 0.29
91 85 0.55
92 5 0.03
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.33
Consensus pattern (90 bp):
CCTCAAAATTTTTCAAAAAAAAGTAATTAAGCCCTGATTTTATTTTGCACTCAATTGGGTACTTG
AACTTTTAAAATACATCAAAAAGGC
Found at i:96765364 original size:89 final size:88
Alignment explanation
Indices: 96765202--96765404 Score: 228
Period size: 89 Copynumber: 2.3 Consensus size: 88
96765192 CAGTTGACCA
* * * * *
96765202 TTCAAGTACCCAATTGAGAGCAAAAAAAATCGGGGGCATAATTGCTTTTTTTGAAAAAATTTGAG
1 TTCAAATA-CCAATTGAGTGCAAAAAAAACCGAGGGCATAATTGCTCTTTTTGAAAAAATTTGAG
*
96765267 AGCTTTTTTGATAAAATTTGAAAG
65 AGCCTTTTTGATAAAATTTGAAAG
* * * * *
96765291 TTTAAATACTCAATTGAGTGCAAAATAAAACCTAGGGCTTAATTGC-CTTTTTGAAAAAGTTTTA
1 TTCAAATAC-CAATTGAGTGCAAAA-AAAACCGAGGGCATAATTGCTCTTTTTGAAAAAATTTGA
** *
96765355 GAGCCTTTTTGATGCATTTTGAAAG
64 GAGCCTTTTTGATAAAATTTGAAAG
*
96765380 TTCAAATACCAAAGTGAGTGCAAAA
1 TTCAAATACC-AATTGAGTGCAAAA
96765405 GCAATAGCTT
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
88 2 0.02
89 77 0.81
90 16 0.17
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (88 bp):
TTCAAATACCAATTGAGTGCAAAAAAAACCGAGGGCATAATTGCTCTTTTTGAAAAAATTTGAGA
GCCTTTTTGATAAAATTTGAAAG
Found at i:96772912 original size:18 final size:18
Alignment explanation
Indices: 96772889--96772923 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
96772879 GTTATAATAC
*
96772889 TATATATTATGTTATTTT
1 TATATATTATGTAATTTT
96772907 TATATATTATGTAATTT
1 TATATATTATGTAATTT
96772924 AGAACACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (18 bp):
TATATATTATGTAATTTT
Found at i:96776626 original size:39 final size:41
Alignment explanation
Indices: 96776547--96776627 Score: 105
Period size: 39 Copynumber: 2.0 Consensus size: 41
96776537 TTAAGGTTTT
96776547 AAAAATATATATAACTTATTTTTTAAAAATTAAAATTATTA
1 AAAAATATATATAACTTATTTTTTAAAAATTAAAATTATTA
* * *
96776588 AAAAATATTTATTA-TT-TTTTTTAAAACTTTAAAA-TATTA
1 AAAAATATATATAACTTATTTTTTAAAA-ATTAAAATTATTA
96776627 A
1 A
96776628 TTAAATGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
39 16 0.44
40 8 0.22
41 12 0.33
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (41 bp):
AAAAATATATATAACTTATTTTTTAAAAATTAAAATTATTA
Found at i:96777440 original size:2 final size:2
Alignment explanation
Indices: 96777433--96777467 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
96777423 ACGCGTTGTA
96777433 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
96777468 AATTAGAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:96777573 original size:17 final size:17
Alignment explanation
Indices: 96777553--96777586 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
96777543 ATAGCATGTT
* *
96777553 TCATATCTTATCTTATC
1 TCATATCATATCATATC
96777570 TCATATCATATCATATC
1 TCATATCATATCATATC
96777587 ATACCTCCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (17 bp):
TCATATCATATCATATC
Found at i:96777928 original size:36 final size:36
Alignment explanation
Indices: 96777882--96777961 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
96777872 ATTTTTAAGA
96777882 AACATAACATAGCATATAATTTATATACAACCTACTT
1 AACAT-ACATAGCATATAATTTATATACAACCTACTT
96777919 AACATACATAGCATATAATTTATATACAACCTACTT
1 AACATACATAGCATATAATTTATATACAACCTACTT
96777955 AACATAC
1 AACATAC
96777962 CTCCTAAGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 38 0.88
37 5 0.12
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (36 bp):
AACATACATAGCATATAATTTATATACAACCTACTT
Found at i:96779262 original size:14 final size:15
Alignment explanation
Indices: 96779245--96779274 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
96779235 ATCATTTTGA
96779245 TTAAT-ATAAATATT
1 TTAATAATAAATATT
96779259 TTAATAATAAATATT
1 TTAATAATAAATATT
96779274 T
1 T
96779275 AGAAAGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAATAATAAATATT
Found at i:96784623 original size:60 final size:60
Alignment explanation
Indices: 96784534--96784705 Score: 308
Period size: 60 Copynumber: 2.9 Consensus size: 60
96784524 AAAAAAGTAA
*
96784534 TTTTTAATAAATTATTTTAAAGATAAAATGTGAAATTGATATCAATAGAAAATTAATAAT
1 TTTTTAATAAGTTATTTTAAAGATAAAATGTGAAATTGATATCAATAGAAAATTAATAAT
96784594 TTTTTAATAAGTTATTTTAAAGATAAAATGTGAAATTGATATCAATAGAAAATTAATAAT
1 TTTTTAATAAGTTATTTTAAAGATAAAATGTGAAATTGATATCAATAGAAAATTAATAAT
* * *
96784654 TTTTTAATAAGTTATTTTAAAGATAAAATGGGAAATTGATATTAATAAAAAA
1 TTTTTAATAAGTTATTTTAAAGATAAAATGTGAAATTGATATCAATAGAAAA
96784706 ATTTAACACA
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 108 1.00
ACGTcount: A:0.49, C:0.01, G:0.10, T:0.40
Consensus pattern (60 bp):
TTTTTAATAAGTTATTTTAAAGATAAAATGTGAAATTGATATCAATAGAAAATTAATAAT
Found at i:96786820 original size:2 final size:2
Alignment explanation
Indices: 96786813--96786845 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
96786803 AATACATCAC
96786813 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
96786846 AAAGAGAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:96787893 original size:3 final size:3
Alignment explanation
Indices: 96787885--96787937 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
96787875 TTTGTTGCCC
96787885 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
96787933 TTA TT
1 TTA TT
96787938 TATTGTATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:96788095 original size:3 final size:3
Alignment explanation
Indices: 96788087--96788162 Score: 152
Period size: 3 Copynumber: 25.3 Consensus size: 3
96788077 TTGGTGGCCC
96788087 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
96788135 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
96788163 TATTTTTCTT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:96790620 original size:24 final size:24
Alignment explanation
Indices: 96790562--96790621 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
96790552 ATTTAAGAAT
* *
96790562 ATATACATAAGAAATATATAACTA
1 ATATATATAAAAAATATATAACTA
*
96790586 ATGACAT-TAAAAAATATAT-ACATA
1 AT-ATATATAAAAAATATATAAC-TA
96790610 ATATATATAAAA
1 ATATATATAAAA
96790622 TACCTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
23 5 0.17
24 22 0.76
25 2 0.07
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.30
Consensus pattern (24 bp):
ATATATATAAAAAATATATAACTA
Found at i:96791128 original size:22 final size:22
Alignment explanation
Indices: 96791103--96791160 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
96791093 GGTTTCTTGG
96791103 TTTTTTTTGGGGGGTTAGGTTT
1 TTTTTTTTGGGGGGTTAGGTTT
***
96791125 TTTTTTTTTTTGGGTTAGGTTT
1 TTTTTTTTGGGGGGTTAGGTTT
*
96791147 TTTTTTTAGGGGGG
1 TTTTTTTTGGGGGG
96791161 CTTAATGGGC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.05, C:0.00, G:0.33, T:0.62
Consensus pattern (22 bp):
TTTTTTTTGGGGGGTTAGGTTT
Found at i:96792206 original size:14 final size:15
Alignment explanation
Indices: 96792172--96792210 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
96792162 AGTTGATTTT
96792172 TTTTGGAAAAACAAAA
1 TTTT-GAAAAACAAAA
*
96792188 TTTTGAAAAACAGAA
1 TTTTGAAAAACAAAA
96792203 -TTTGAAAA
1 TTTTGAAAA
96792211 TACCTCAGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.36
15 10 0.45
16 4 0.18
ACGTcount: A:0.54, C:0.05, G:0.13, T:0.28
Consensus pattern (15 bp):
TTTTGAAAAACAAAA
Found at i:96792239 original size:185 final size:182
Alignment explanation
Indices: 96791829--96792287 Score: 461
Period size: 185 Copynumber: 2.5 Consensus size: 182
96791819 ACTAGACATT
* ** *
96791829 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAG-AATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * ** *
96791894 TTGA--TTTTT-AAAACAAAATTTG--TAAAACAGATTTTGAAAATACCTCGATATGTGACCCGA
65 TTGATTTTTTTGAAAACAAAA-TTGAAAAAAAAAGAAATTGAAAATACCTCGATACGTGACCCGA
* * *
96791954 AGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGCAAAGCATAAATAAATA
129 AGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATAAATA
* * * * * *
96792008 AAAAATATCAATTGAAAATACCTCGGCGTGT-AACCTGAGACTCAACTCACCTCTCGCAATATGA
1 AAAAACA-GAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
* * *
96792072 GTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAGAAATTGAAAATACCTC-A-GCGTGTCCT
64 GTTGATTTTTTTGA-AAACA-AAATTGAAAAAAAAAGAAATTGAAAATACCTCGATACGTGACCC
* * ** *
96792135 GAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACA-AAAT-TTTG
127 GAAGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT-GAAAAACATAAATAAATA
* *
96792193 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAG
1 AAAAACAGAA-TTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* *
96792258 CTGATTTTTTTGAAACACAGAAATGGAAAA
65 TTGATTTTTTTGAAA-ACA-AAATTGAAAA
96792288 CACCTCAGCG
Statistics
Matches: 227, Mismatches: 37, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
178 3 0.01
179 54 0.24
181 5 0.02
182 1 0.00
183 43 0.19
184 8 0.04
185 96 0.42
186 11 0.05
187 6 0.03
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (182 bp):
AAAAACAGAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAACAAAATTGAAAAAAAAAGAAATTGAAAATACCTCGATACGTGACCCGAAG
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATAAATA
Found at i:96792254 original size:94 final size:93
Alignment explanation
Indices: 96791829--96792281 Score: 421
Period size: 92 Copynumber: 5.0 Consensus size: 93
96791819 ACTAGACATT
* ** * *
96791829 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAG
96791894 TTGA--TTTTT--AAAACA-AAATTTGT-
66 TTGATTTTTTTGAAAAACATAAATTT-TA
** ** *
96791917 -AAAACAGATTTTGAAAATACCTC-GATATGTGACCCGAA-GCTCAACTCACCTCTCGTAATATG
1 AAAAACAGAAATTGAAAATACCTCAG-CGTGTGACCC-AAGGCTCAACTCACCTCTCGCAATATG
* * **
96791979 AGTTGA--TTTTTGCAAAGCATAAATAAATA
64 AGTTGATTTTTTTGAAAAACATAAAT-TTTA
* ** * * ** *
96792008 AAAAATATCAATTGAAAATACCTCGGCGTGTAACCTGAGACTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAG
* **
96792073 TTGATTTTTTTGACAAACATAAATTGAA
66 TTGATTTTTTTGAAAAACATAAATTTTA
* ** *
96792101 AAAAAAAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
96792164 TTGATTTTTTTTGGAAAAACA-AAATTTTG
66 TTGA-TTTTTTT-GAAAAACATAAATTTTA
* ** *
96792193 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * *
96792258 CTGATTTTTTTGAAACACAGAAAT
66 TTGATTTTTTTGAAAAACATAAAT
96792282 GGAAAACACC
Statistics
Matches: 299, Mismatches: 49, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
86 1 0.00
87 60 0.20
88 2 0.01
89 5 0.02
90 5 0.02
91 35 0.12
92 100 0.33
93 47 0.16
94 44 0.15
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (93 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAAACATAAATTTTA
Found at i:96792393 original size:75 final size:75
Alignment explanation
Indices: 96792188--96792972 Score: 441
Period size: 73 Copynumber: 10.3 Consensus size: 75
96792178 AAAAACAAAA
* * ** ** *
96792188 TTTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAAT
1 TTTTGAAAAACAGAAATTGAAAATACCTCA--ATGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
96792253 ATGAGCTGATTT
64 ATGAGCTGATTT
* * * * *
96792265 TTTTGAAACACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATAT
1 TTTTGAAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
96792328 GAGCTGATTT
66 GAGCTGATTT
*
96792338 TTTTGAAAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
1 TTTTGAAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
*
96792403 GAGTTGA--T
66 GAGCTGATTT
* * * ** * * * ** *
96792411 TTTTGAAACTTAACTTGAAA-AGCAAAT-TTTGAAAATAACTCGATATGTGACTCAAGGCTCAAC
1 TTTTGAAA---AAC-AGAAATTGAAAATACCT--CAAT--GT-G-TCT-TGAGGC-T----CAAC
*
96792474 TCACCTCTCGCAATATGAGTTGA--T
50 TCACCTCTCGCAATATGAGCTGATTT
* * * * *
96792498 TTTTGAAAAATATAAATTGAAGTAAAAAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCAC
1 TTTTGAAAAACAGAAATT---G-------AAAATACCTCAATGTGT-CT-TGAGGCTCAACTCAC
*
96792563 CTCTCGCAATATGAGTTGATTT
54 CTCTCGCAATATGAGCTGATTT
* * *
96792585 TTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAA
1 TTTTGAAAAACAGAAATTGAAAATACCTCA--ATGTG-TCTTGAGGCTCAACTCACCTCTCGCAA
* * *
96792649 TATAAG-TTAATT
63 TATGAGCTGATTT
* **
96792661 TTTTG-AAAACAGAAATTGAAAATACATCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
1 TTTTGAAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
* *
96792725 GAGTTGA--A
66 GAGCTGATTT
* * * * **
96792733 TTTTG-AAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGTTCAACTCATTTCTCGCAATAT
1 TTTTGAAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
* **
96792797 GAG-TTA-AA
66 GAGCTGATTT
* ** ** *
96792805 TTTTG-AAAACAG--ATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATAT
1 TTTTGAAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
*
96792867 GAGTTGA--T
66 GAGCTGATTT
* * ** * **
96792875 TTTTG-AAAACAGAAATTGAAATTAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAA
1 TTTTGAAAAACAGAAATTGAAAATACCTCA--ATGTG-TCTTGAGGCTCAACTCACCTCTCGCAA
96792938 TATGAG-TCG-TTT
63 TATGAGCT-GATTT
* **
96792950 TTTTTAAAGGCAGAAATTGAAAA
1 TTTTGAAAAACAGAAATTGAAAA
96792973 ACGGAAATTG
Statistics
Matches: 571, Mismatches: 88, Indels: 99
0.75 0.12 0.13
Matches are distributed among these distances:
70 58 0.10
71 4 0.01
72 89 0.16
73 103 0.18
74 37 0.06
75 66 0.12
76 30 0.05
77 70 0.12
79 5 0.01
80 1 0.00
81 2 0.00
82 4 0.01
83 3 0.01
84 3 0.01
85 27 0.05
87 53 0.09
89 1 0.00
90 7 0.01
91 1 0.00
93 2 0.00
94 4 0.01
95 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (75 bp):
TTTTGAAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGCTGATTT
Found at i:96792500 original size:162 final size:156
Alignment explanation
Indices: 96792307--96793915 Score: 655
Period size: 150 Copynumber: 10.2 Consensus size: 156
96792297 GTCTTGAGGT
*
96792307 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGT
*
96792372 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTT-AACTTGAAAAGCAA
66 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-TTGAA--AG-AAAG-AA
*
96792436 ATTTTGAAAATAACTC-GATATGTG-ACTCAAGGC
126 A--TTGAAAATAACTCAG-CATGTGAAC-CAAGGC
***
96792469 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAT-AAATTGA-AGTAAAAAAAAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT------T-TGAAA--GACAG-AAATTGAAAAT
* * *
96792532 ACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT----TTGAAA
56 ACCTCAATGTGT-CT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATTGAAA
* * *
96792593 GACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGC
119 GAAAGAAATTGAAAATAACTCAGCATGTGAACCAAGGC
* * *
96792631 TCAACTCACCTCTCGCAATATAAGTT-AATTTTTTGAAA-ACAGAAATTGAAAATACATCAATGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGT
** * *
96792694 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG--A---AAA-CAA-AAATTGA
66 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATTGAAAGAAAGAAATTGA
* * * * ** *
96792752 AATTACCTCA--ACGTG-TCTTGAGGT
131 AAATAACTCAGCATGTGAAC-CAAGGC
** ** * **
96792776 TCAACTCATTTCTCGCAATATGAGTT-A-AATTTTGAAA-ACAG--ATTGAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGT
** * *
96792836 GTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTT----TTGAAA-ACAGAAATTGA
66 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATTGAAAGAAAGAAATTGA
* * ** *
96792894 AATTAGCTCAGCGCGTGAGCCAAGGC
131 AAATAACTCAGCATGTGAACCAAGGC
* * *
96792920 TCAACTCACCTCTCGCAATATGAGTCGTTTTTTTTAAAGGCAGAAATTGAAAAACGGAAATTGAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-------GAAA--G----ACAGAAATTGAA
** * * * * * *
96792985 AATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGGTTTTT----TTT
53 AATACCTC--AATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATTG
* * * * ** *
96793046 ACA-ACAGAAATTGAAATTAGCTCAGCGCGTGAGCCAAGGC
116 AAAGAAAGAAATTGAAAATAACTCAGCATGTGAACCAAGGC
* **
96793086 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTAACTTGAAA-AGTAGATTTTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTT-----TT---TTGAAAGA-CAGAAATTGAAAA
* ** * * *** * ** * **
96793150 TACCTCGATATGTGACTCAAGGCTCAACTCACCTCTCGCAGAAATTACAAGCTTAACTCACCTTT
55 TACCTC-A-ATGTGTCTTGAGGCTCAACTCACCTCTCGCA-ATATGAGTTGATT-TTTGA-AATT
* * * ** * *
96793215 CGCAATATAAATTGAAA---AAAATACCACAGTTTGTGATCTGAA-GC
115 -G-AA-AGAAA--GAAATTGAAAATAACTCAGCATGTGAAC-CAAGGC
* *
96793259 TCAACTCACCTCTCACAATATGAGTTAAATTTTTTTTTTTGTTTTGAAA-ACAGAAATTG-AAAT
1 TCAACTCACCTCTCGCAATATGAGTT-GA--------TTT-TTTTGAAAGACAGAAATTGAAAAT
* ** *
96793322 ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTG-----GAAA-A
56 ACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATTGAAAGA
* * * ** *
96793380 CAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGC
121 AAGAAATTGAAAATAACTCAGCATGTGAACCAAGGC
* **
96793414 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAAAAATTGAAAATACCTCAACAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGT
** *** * *
96793478 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT-TTTTTGACA-ACAGAAATTGA
66 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATTGAAAGAAAGAAATTGA
* * * **
96793541 AATTACCTCAGC--GT-ATCTTGAGGC
131 AAATAACTCAGCATGTGAAC-CAAGGC
* *
96793565 TTC-ACTCACCTCTCACAATATGAGTTGATTTTTTTTTAAAGGCAGAAATTGAAAAACGGAAATT
1 -TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTT-------GAAA--G----ACAGAAATT
** * * * * *
96793629 GAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTT---T
50 GAAAATACCTC--AATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* * * * * *
96793691 TTGACA-ACAGAAATTGAAACTACCTCAGC--GTG-TCCTGAGGC
113 TTGAAAGAAAGAAATTGAAAATAACTCAGCATGTGAACC-AAGGC
* * **
96793732 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAATG
* * *
96793796 TGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT----TTGAAAGACAGAAATTG
65 TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATTGAAAGAAAGAAATTG
* ** *
96793857 AAAATAGCTCAGCGCGTGAGCCAAGGC
130 AAAATAACTCAGCATGTGAACCAAGGC
*
96793884 TCAACTCACCTCTCACAATATGAGTTGATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
96793916 GAAAAACAAA
Statistics
Matches: 1153, Mismatches: 173, Indels: 253
0.73 0.11 0.16
Matches are distributed among these distances:
140 3 0.00
141 4 0.00
142 64 0.06
144 51 0.04
145 44 0.04
146 55 0.05
147 19 0.02
148 1 0.00
149 8 0.01
150 99 0.09
151 62 0.05
152 73 0.06
153 8 0.01
154 13 0.01
155 35 0.03
156 2 0.00
157 11 0.01
158 2 0.00
159 4 0.00
160 3 0.00
161 9 0.01
162 94 0.08
163 45 0.04
164 44 0.04
165 4 0.00
166 82 0.07
167 82 0.07
168 14 0.01
169 70 0.06
170 24 0.02
171 10 0.01
172 45 0.04
173 51 0.04
174 5 0.00
176 8 0.01
180 5 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (156 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGT
GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATTGAAAGAAAGAAATTGA
AAATAACTCAGCATGTGAACCAAGGC
Found at i:96792591 original size:87 final size:86
Alignment explanation
Indices: 96792357--96792586 Score: 258
Period size: 85 Copynumber: 2.7 Consensus size: 86
96792347 ACAGAAATTG
* * *
96792357 AAAATACCTCAATGTGT-CT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAA
1 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
* * ***
96792419 CTTAACTTGAAAAGCAAATTTTG
66 ATTAAATTG-AAAGCAAA-TAAA
* * *
96792442 AAAATAACTC-GATATGTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
1 AAAATACCTCAG-TGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
*
96792505 AAATATAAATTG-AAGTAAA-AAA
64 AAAT-TAAATTGAAAGCAAATAAA
96792527 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
96792587 TTGAAAGACA
Statistics
Matches: 122, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
85 63 0.52
86 7 0.06
87 42 0.34
88 4 0.03
89 6 0.05
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (86 bp):
AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
ATTAAATTGAAAGCAAATAAA
Found at i:96792662 original size:77 final size:74
Alignment explanation
Indices: 96792527--96792944 Score: 428
Period size: 72 Copynumber: 5.7 Consensus size: 74
96792517 AAGTAAAAAA
** * * *
96792527 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCATGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGAA
96792592 AGACAGAAATTG
64 A-ACAGAAATTG
* *
96792604 AAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTAATTTTTTGAAA
1 AAAATACCTCAGCATGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA-TTTTTGAAA
96792669 ACAGAAATTG
65 ACAGAAATTG
* * **
96792679 AAAATACATCA--ATGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAA
1 AAAATACCTCAGCATGTGATC-CGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAA
*
96792740 AACAAAAATTG
64 AACAGAAATTG
* * * * ** *
96792751 AAATTACCTCA--ACGTG-TCTTGAGGTTCAACTCATTTCTCGCAATATGAGTTAAATTTTGAAA
1 AAAATACCTCAGCATGTGATC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAA
96792813 ACAG--ATTG
65 ACAGAAATTG
* * *
96792821 AAATTACCTCAGC--GTG-TCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAA
1 AAAATACCTCAGCATGTGAT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAA
96792883 ACAGAAATTG
65 ACAGAAATTG
* * ** * *
96792893 AAATTAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAATACCTCAGCATGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGT
96792945 CGTTTTTTTT
Statistics
Matches: 299, Mismatches: 30, Indels: 27
0.84 0.08 0.08
Matches are distributed among these distances:
70 59 0.20
71 3 0.01
72 92 0.31
73 33 0.11
74 35 0.12
75 20 0.07
76 10 0.03
77 47 0.16
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (74 bp):
AAAATACCTCAGCATGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAA
CAGAAATTG
Found at i:96792860 original size:142 final size:145
Alignment explanation
Indices: 96792552--96793909 Score: 528
Period size: 167 Copynumber: 8.7 Consensus size: 145
96792542 GTGATCTGAA
*
96792552 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACCTCA-C
* *
96792617 ATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTAATTTTTTGAAAACAGAAATTGAAA
62 ACGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTAATATTTTGAAAACAG-AATTGAAA
* **
96792682 ATACATCAATGTGTCTTGAG
126 ATACATCAACGTGTCCCGAG
** * *
96792702 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCA-ACGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCACACGT
* * * ** * *
96792766 G-TCTTGAGGTTCAACTCATTTCTCGCAATATGAGTTAA-ATTTTGAAAACAG-ATTGAAATTAC
66 GAAC-CGAGGCTCAACTCACCTCTCGCAATATAAGTTAATATTTTGAAAACAGAATTGAAAATAC
* *
96792828 CTCAGCGTGTCCCGAG
130 ATCAACGTGTCCCGAG
* * *
96792844 GCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTAGCTCAGCGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA-CACG
* * * * **
96792909 TGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGTTTTTTTTAAAGGCAGAAATTGAAAAA
65 TGAACCGAGGCTCAACTCACCTCTCGCAATAT-A--AG------TT--A---ATATTTTG-AAAA
* * ** *
96792974 CGGAAATTGAAAATACCTCGGCGTGTGACCTGAG
115 CAG-AATTGAAAATACATCAACGTGT--CCCGAG
* * * * * * *
96793008 GCTCAACTCGCCTCTCGCAATACGAGTTGGTTTTTTTTACAACAGAAATTGAAATTAGCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAACAGAAATTGAAATTACCTCA-CA
* * * *
96793073 CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTGAAACTTAACTTGAAAAG
63 CGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTAATATTTTG-AA---AAC------AG
* * * * *
96793137 TAGATTTTGAAAATACCTCGATATGTGACTCAAG
118 -A-A--TTGAAAATACATC-A-ACGTGTCCCGAG
** * * * * *
96793171 GCTCAACTCACCTCTCGCAGAAATTACAAGCTTAACTCACCTTTCG-CAATATAAATTGAAAAAA
1 GCTCAACTCACCTCTCGC---AA-TATGAG-TTGA-T----TTTTGAAAACAGAAATTG---AAA
* * *** * * * * * *
96793235 ATACCACAGTTTGTGATCTGAAGCTCAACTCACCTCTCACAATATGAGTTAAATTTTTTTTTTTG
53 TTACCTCA-CACGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTT-AA----------TA
* **
96793300 TTTTGAAAACAGAAATTG-AAATACCTCAACGTGTCTTGAG
106 TTTTGAAAACAG-AATTGAAAATACATCAACGTGTCCCGAG
** * * *
96793340 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTGGAAAACAGAAATTGAAATTACCTCA-GCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCACACGT
** * * * *
96793404 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATA
66 GAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTAATATTTTGAAA-AC-AGAATTGAAAATA
* * **
96793469 CCTCAACATGTCTTGAG
129 CATCAACGTGTCCCGAG
** *
96793486 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTGAAATTACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTGAAAACAGAAATTGAAATTACCTCA
* * * * * * *
96793551 -GCGT-ATCTTGAGGCTTC-ACTCACCTCTCACAATATGAGTTGATTTTTTTTTAAAGGCAGAAA
61 CACGTGAAC-CGAGGC-TCAACTCACCTCTCGCAATATAAGTT-A----ATATT-----------
* * ** *
96793613 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGTCCTGAG
108 TTG-AAAACAG-AATTGAAAATACATCAAC--GTGTCCCGAG
* * * * * *
96793655 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAACTACCTCA-G
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAACAGAAATTGAAATTACCTCACA
* * * * *
96793719 CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGA
63 CGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTT-A-ATATTTTGAAAACAG-AATTGA
* * * * *
96793783 AATTACCTCAGCGTGTCCTGAA
124 AAATACATCAACGTGTCCCGAG
* *
96793805 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACCTCA-C
* * * * *
96793870 GCGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGTT
62 ACGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTT
96793910 GATTTTGAAA
Statistics
Matches: 959, Mismatches: 146, Indels: 204
0.73 0.11 0.16
Matches are distributed among these distances:
142 75 0.08
144 48 0.05
145 41 0.04
146 52 0.05
147 20 0.02
148 8 0.01
149 10 0.01
150 84 0.09
151 64 0.07
152 59 0.06
153 7 0.01
154 4 0.00
155 34 0.04
156 4 0.00
157 11 0.01
158 1 0.00
159 8 0.01
160 17 0.02
161 1 0.00
162 19 0.02
163 34 0.04
164 39 0.04
165 8 0.01
166 71 0.07
167 94 0.10
168 5 0.01
169 57 0.06
170 11 0.01
171 12 0.01
172 3 0.00
173 42 0.04
174 2 0.00
175 3 0.00
181 3 0.00
184 3 0.00
185 5 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (145 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCACACGT
GAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTAATATTTTGAAAACAGAATTGAAAATACA
TCAACGTGTCCCGAG
Found at i:96793042 original size:90 final size:90
Alignment explanation
Indices: 96792880--96793061 Score: 235
Period size: 90 Copynumber: 2.0 Consensus size: 90
96792870 TTGATTTTTG
* * *
96792880 AAAACAGAAATTGAAATTAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATACGAGT
96792945 C-GTTTTTTTTA-AAGGCAGAAATTGA
66 CGGTTTTTTTTACAA--CAGAAATTGA
* * * * *
96792970 AAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCGCAATACGAG
1 AAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATACGAG
*
96793034 TTGGTTTTTTTTACAACAGAAATTGA
65 TCGGTTTTTTTTACAACAGAAATTGA
96793060 AA
1 AA
96793062 TTAGCTCAGC
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
89 2 0.03
90 66 0.82
91 10 0.12
92 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (90 bp):
AAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATACGAGT
CGGTTTTTTTTACAACAGAAATTGA
Found at i:96793572 original size:77 final size:75
Alignment explanation
Indices: 96793295--96793915 Score: 544
Period size: 75 Copynumber: 8.1 Consensus size: 75
96793285 AAATTTTTTT
* **
96793295 TTTTGTTTTGAAAACAGAAATTGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCA
1 TTTT-TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCA
96793359 ATATGAGTTGA
65 ATATGAGTTGA
* * **
96793370 ---ATTTGGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAA
96793432 TATGAGTTGA
66 TATGAGTTGA
* * * * **
96793442 --TTTTTTGAAAGACAAAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCA
1 TTTTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCA
96793505 ATATGAGTTGA
65 ATATGAGTTGA
* * *
96793516 TTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTATCTTGAGGCTTC-ACTCACCTCTCA
1 --TTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGC-TCAACTCACCTCTCG
96793580 CAATATGAGTTGA
63 CAATATGAGTTGA
* * ** * * * * * * *
96793593 TTTTTTTTTAAAGGCAGAAATTGAAAAACGGAAATTGAAAAT-A-CCTCGGCGTGTGTCCTGAGG
1 TTTTTTTTGAAA-ACAGAAATT--------GAAATT--ACCTCAGCGT-GTCTTGAG-GCTCA-A
* *
96793656 CTCAACTCGCCGCTCGCAATACGAGTTGA
52 CTC-A----CCTCTCGCAATATGAGTTGA
* * *
96793685 TTTTTTTTGACAACAGAAATTGAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAA
96793750 TATGAGTTGA
66 TATGAGTTGA
* * *
96793760 TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAA
1 TTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAA
96793825 TATGAGTTGA
66 TATGAGTTGA
* * * **
96793835 -TTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTC
1 TTTTTTTTGAAA-ACAGAAATTGAAATTACCTCA--GCGTG-TCTTGAGGCTCAACTCACCTCTC
*
96793898 ACAATATGAGTTGA
62 GCAATATGAGTTGA
96793912 TTTT
1 TTTT
96793916 GAAAAACAAA
Statistics
Matches: 444, Mismatches: 67, Indels: 67
0.77 0.12 0.12
Matches are distributed among these distances:
71 20 0.05
72 44 0.10
73 7 0.02
74 65 0.15
75 120 0.27
76 8 0.02
77 87 0.20
78 15 0.03
79 1 0.00
80 3 0.01
81 5 0.01
82 6 0.01
83 7 0.02
84 8 0.02
85 6 0.01
86 3 0.01
87 3 0.01
88 1 0.00
91 8 0.02
92 27 0.06
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (75 bp):
TTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGA
Found at i:96793688 original size:92 final size:89
Alignment explanation
Indices: 96793533--96793709 Score: 214
Period size: 92 Copynumber: 2.0 Consensus size: 89
96793523 TTTGACAACA
* * * *
96793533 GAAATTGAAATTACCTCAGCGTATCTTGAGGCTTCACTCACCTCTCACAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTATCCTGAGGCTTCACTCACCGCTCACAATACGAGTTGATTTTT
*
96793598 TTTTA-AAGGCAGAAATTGAAAAACG
66 TTTGACAA--CAGAAATTGAAAAACG
* * * *
96793623 GAAATTGAAAATACCTCGGCGTGTGTCCTGAGGC-TCAACTCGCCGCTCGCAATACGAGTTGATT
1 GAAATTGAAAATACCTCAGC--GTATCCTGAGGCTTC-ACTCACCGCTCACAATACGAGTTGATT
96793687 TTTTTTGACAACAGAAATTGAAA
63 TTTTTTGACAACAGAAATTGAAA
96793710 CTACCTCAGC
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
90 18 0.24
91 14 0.19
92 40 0.54
93 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (89 bp):
GAAATTGAAAATACCTCAGCGTATCCTGAGGCTTCACTCACCGCTCACAATACGAGTTGATTTTT
TTTGACAACAGAAATTGAAAAACG
Found at i:96793835 original size:242 final size:239
Alignment explanation
Indices: 96793376--96793860 Score: 697
Period size: 242 Copynumber: 2.0 Consensus size: 239
96793366 TTGAATTTGG
* * *
96793376 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCGCTCGCAATACGAGTTG
* **
96793441 ATTTTTTGAAAGACAAAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAA
66 ATTTTTTGAAAGACAAAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAA
* *
96793506 TATGAGTTGATTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTATCTTGAGGCTTCACT
131 TATGAGTTGA-TTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTATCCTGAAGCTTCACT
* *
96793571 CACCTCTCACAATATGAGTTGATTTTTTTTTAAAGGCAGAAATTGA
195 CACCTCTCACAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTGA
* * * *
96793617 AAAACGGAAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCGCCGCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCGCTCGCAATACGAGT
* * * * *
96793682 TGATTTTTTTTGACA-ACAGAAATTGAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
64 TGA--TTTTTTGAAAGACAAAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTC
*
96793746 GCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAAGC-TC
127 GCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTATCCTGAAGCTTC
*
96793809 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGA
192 -ACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAGACAGAAATTGA
96793858 AAA
1 AAA
96793861 TAGCTCAGCG
Statistics
Matches: 218, Mismatches: 21, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
241 49 0.22
242 68 0.31
243 36 0.17
244 56 0.26
245 9 0.04
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (239 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCGCTCGCAATACGAGTTG
ATTTTTTGAAAGACAAAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTATCCTGAAGCTTCACTC
ACCTCTCACAATATGAGTTGATTTTTTTGAAAGACAGAAATTGA
Found at i:96793959 original size:53 final size:53
Alignment explanation
Indices: 96793879--96794099 Score: 151
Period size: 54 Copynumber: 3.9 Consensus size: 53
96793869 CGCGTGAGCC
*
96793879 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTGAAAAACAAAAATAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATAAA
* * *
96793932 AAGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT--AAAACTAAAAATACCTCAGCGTGCCC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAC-AAAAATA----A--------
*
96793994 C
53 A
* * * * *
96793995 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA-CAAAAATAAA
* * * * *
96794049 AAGGTTTAACCCAACTCTCGCAATATGAGTTGATTCTTGACAAACAAAAAT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTGAAAAACAAAAAT
96794100 TGAAATTACC
Statistics
Matches: 127, Mismatches: 23, Indels: 35
0.69 0.12 0.19
Matches are distributed among these distances:
50 5 0.04
51 7 0.06
52 5 0.04
53 27 0.21
54 34 0.27
55 8 0.06
62 1 0.01
63 26 0.20
64 5 0.04
66 9 0.07
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (53 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATAAA
Found at i:96794183 original size:72 final size:73
Alignment explanation
Indices: 96794063--96794221 Score: 223
Period size: 72 Copynumber: 2.2 Consensus size: 73
96794053 TTTAACCCAA
** * * * *
96794063 CTCTCGCAATATGAGTTGATTCTTGACAAACAAAAATTGAAATTACCTCATCGTGTCCTGAGGCT
1 CTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
96794128 CAACTCAC
66 CAACTCAC
96794136 CTCTCGCAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCTCAGCGTGACCTGAGGC
1 CTCTCGCAATATGAGTTGATAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCTGAGGC
*
96794199 TCGACTCAC
65 TCAACTCAC
*
96794208 CTCTAGCAATATGA
1 CTCTCGCAATATGA
96794222 AAAACAAAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
71 3 0.04
72 55 0.71
73 19 0.25
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.26
Consensus pattern (73 bp):
CTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
CAACTCAC
Found at i:96794319 original size:64 final size:68
Alignment explanation
Indices: 96794237--96794396 Score: 177
Period size: 71 Copynumber: 2.4 Consensus size: 68
96794227 AAAAATAAAA
* * *
96794237 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAA-AAC-TAAAAATACCTCAGCGTGCC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTCAATTTAAAACAACATAAAAATACCTCAACGTGCC
96794298 CCG
66 CCG
* *
96794301 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTCAATTT-AAAACAAC-A-TAAAAATACCTCAACGT
* **
96794366 GTCTTG
63 GCCCCG
96794372 AGGCTCAACTCA-TCTCTCGCAATAT
1 AGGCTCAACTCACT-TCTCGCAATAT
96794397 AAATTGAGTT
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
64 26 0.32
65 5 0.06
67 3 0.04
68 3 0.04
70 1 0.01
71 42 0.52
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.27
Consensus pattern (68 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTCAATTTAAAACAACATAAAAATACCTCAACGTGCC
CCG
Found at i:96802428 original size:16 final size:17
Alignment explanation
Indices: 96802402--96802433 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
96802392 AGTGTGGGAT
96802402 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
96802419 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
96802434 TATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:96804469 original size:2 final size:2
Alignment explanation
Indices: 96804420--96804450 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
96804410 GGTATTTAAA
*
96804420 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
96804451 ATAGTATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:96806103 original size:23 final size:23
Alignment explanation
Indices: 96806075--96806127 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
96806065 TACATGATAT
96806075 ACATAATATATATAT-AAAA-AAA
1 ACATAATATA-ATATGAAAATAAA
*
96806097 ACAATAA-ATAATGTGAAAATAAA
1 AC-ATAATATAATATGAAAATAAA
96806120 ACATAATA
1 ACATAATA
96806128 AGGATTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 13 0.50
23 10 0.38
ACGTcount: A:0.66, C:0.06, G:0.04, T:0.25
Consensus pattern (23 bp):
ACATAATATAATATGAAAATAAA
Found at i:96806189 original size:30 final size:29
Alignment explanation
Indices: 96806155--96806215 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
96806145 TTGTAATATA
96806155 AACATATAAGAAAAATA-ATAGATATAAAGT
1 AACATATAA-AAAAATACATAGATAT-AAGT
* *
96806185 AACATATAAAACAATACATATATATAAGT
1 AACATATAAAAAAATACATAGATATAAGT
96806214 AA
1 AA
96806216 TAAATATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.25
Consensus pattern (29 bp):
AACATATAAAAAAATACATAGATATAAGT
Found at i:96806306 original size:20 final size:22
Alignment explanation
Indices: 96806259--96806309 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
96806249 TAATTTAAGG
96806259 AAAATAATATATATAATAAGTA
1 AAAATAATATATATAATAAGTA
* *
96806281 ATAATAATA-ATAT-ATAATTA
1 AAAATAATATATATAATAAGTA
96806301 AAAATAATA
1 AAAATAATA
96806310 CTCATAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 14 0.54
21 4 0.15
22 8 0.31
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATAATATATATAATAAGTA
Found at i:96806306 original size:23 final size:22
Alignment explanation
Indices: 96806261--96806309 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
96806251 ATTTAAGGAA
*
96806261 AATAATATATATAATAAGTAAT
1 AATAATATATATAATAAGAAAT
96806283 AATAATAATATATAATTAA-AAAT
1 AATAAT-ATATATAA-TAAGAAAT
96806306 AATA
1 AATA
96806310 CTCATAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 6 0.25
23 15 0.62
24 3 0.12
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
AATAATATATATAATAAGAAAT
Found at i:96808047 original size:83 final size:83
Alignment explanation
Indices: 96807903--96808171 Score: 403
Period size: 83 Copynumber: 3.2 Consensus size: 83
96807893 TTCGATTTGT
* * * * *
96807903 AAGGATGTCAAATTATCTTGAGTCTGCTTGAAAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCATATCTGCAATGTCCTCGA
*
96807968 TTTTTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
96807986 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCATATCTGCAACGTCCTTGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCATATCTGCAATGTCCTCGA
*
96808051 TTTGTTCCTCGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * * *
96808069 AAGGATGCCAAATTATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCAAATCTACTATGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCATATCTGCAATGTCCTCGA
*
96808134 TTTGTTCCTTGTGAGCAC
66 TTTGTTCCTTGTAAGCAC
96808152 AAGGATGCCAAATCATCTTG
1 AAGGATGCCAAATCATCTTG
96808172 GATCTGCTTC
Statistics
Matches: 166, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 166 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (83 bp):
AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCATATCTGCAATGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:96808306 original size:119 final size:119
Alignment explanation
Indices: 96808095--96808528 Score: 787
Period size: 119 Copynumber: 3.6 Consensus size: 119
96808085 CTTGAGTCTG
* *
96808095 TTTGAGAACGTTTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTGAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
*
96808160 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
66 CAAATCATCTTGGATCTACTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
*
96808214 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
*
96808279 CAAATCATCTTGGATCTACTTCAATATAAACATATGAAGTCTAGATCTGCTGCC
66 CAAATCATCTTGGATCTACTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
*
96808333 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
*
96808398 CAAATCATCTTGGATCTACTTCAATATAAACATCTGAAGTCTAGATCTACTGCC
66 CAAATCATCTTGGATCTACTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
* *
96808452 TTTGAGAACGTCTGAGAGTTAAATCTACTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
96808517 CAAATCATCTTG
66 CAAATCATCTTG
96808529 AGTCTATTTG
Statistics
Matches: 305, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
119 305 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
CAAATCATCTTGGATCTACTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
Found at i:96820659 original size:30 final size:29
Alignment explanation
Indices: 96820625--96820685 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
96820615 TTGTAATATA
96820625 AACATATAAGAAAAATA-ATAGATATAAAGT
1 AACATATAA-AAAAATACATAGATAT-AAGT
* *
96820655 AACATATAAAACAATACATATATATAAGT
1 AACATATAAAAAAATACATAGATATAAGT
96820684 AA
1 AA
96820686 TAAATATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.25
Consensus pattern (29 bp):
AACATATAAAAAAATACATAGATATAAGT
Found at i:96820737 original size:3 final size:3
Alignment explanation
Indices: 96820731--96820787 Score: 51
Period size: 3 Copynumber: 17.7 Consensus size: 3
96820721 ATTTAAGGAA
* *
96820731 AAT AAT ATAT AAT AAGT AAT AAT AAT AAT ATAT AATT AAA AAT AAT ACT
1 AAT AAT A-AT AAT AA-T AAT AAT AAT AAT A-AT AA-T AAT AAT AAT AAT
*
96820780 CAT AAT AA
1 AAT AAT AA
96820788 AACAATTTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
3 32 0.73
4 12 0.27
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:96820752 original size:10 final size:9
Alignment explanation
Indices: 96820731--96820787 Score: 51
Period size: 10 Copynumber: 5.9 Consensus size: 9
96820721 ATTTAAGGAA
96820731 AATAATATAT
1 AATAATA-AT
96820741 AATAAGTAAT
1 AATAA-TAAT
96820751 AATAATAAT
1 AATAATAAT
*
96820760 ATATAATTAAA
1 A-ATAA-TAAT
*
96820771 AATAATACT
1 AATAATAAT
*
96820780 CATAATAA
1 AATAATAA
96820788 AACAATTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
9 13 0.33
10 20 0.51
11 6 0.15
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (9 bp):
AATAATAAT
Found at i:96820754 original size:20 final size:20
Alignment explanation
Indices: 96820729--96820787 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
96820719 TAATTTAAGG
96820729 AAAATAATATATAATAAGTA
1 AAAATAATATATAATAAGTA
* *
96820749 ATAATAATA-ATATATAATTA
1 AAAATAATATATA-ATAAGTA
96820769 AAAATAATACTCATAATAA
1 AAAATAATA-T-ATAATAA
96820788 AACAATTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 3 0.09
20 22 0.69
22 4 0.12
23 3 0.09
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAATAATATATAATAAGTA
Found at i:96820774 original size:23 final size:23
Alignment explanation
Indices: 96820731--96820777 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
96820721 ATTTAAGGAA
*
96820731 AATAATATATAATAAGTAATAAT
1 AATAATATATAATAAGAAATAAT
96820754 AATAATATATAATTAA-AAATAAT
1 AATAATATATAA-TAAGAAATAAT
96820777 A
1 A
96820778 CTCATAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 19 0.86
24 3 0.14
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (23 bp):
AATAATATATAATAAGAAATAAT
Found at i:96821962 original size:33 final size:33
Alignment explanation
Indices: 96821920--96821987 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
96821910 TTGAAAACCC
96821920 TAGCTGATAATTTTGGGTTTTATGGGCCTCTGT
1 TAGCTGATAATTTTGGGTTTTATGGGCCTCTGT
96821953 TAGCTGATAATTTTGGGTTTTATGGGCCTCTGT
1 TAGCTGATAATTTTGGGTTTTATGGGCCTCTGT
96821986 TA
1 TA
96821988 TTCAGGTCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.16, C:0.12, G:0.26, T:0.46
Consensus pattern (33 bp):
TAGCTGATAATTTTGGGTTTTATGGGCCTCTGT
Found at i:96823577 original size:53 final size:53
Alignment explanation
Indices: 96823511--96823630 Score: 195
Period size: 53 Copynumber: 2.3 Consensus size: 53
96823501 ATAAGTGCGC
* * *
96823511 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGCCTATGGCATCGGTACAATGTGATAATGTGACT
* *
96823564 CCGTATAAGACCATAGCTGGCCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGCCTATGGCATCGGTACAATGTGATAATGTGACT
96823617 CCGTATAAGACCAT
1 CCGTATAAGACCAT
96823631 GTCTGAGATA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 62 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGCCTATGGCATCGGTACAATGTGATAATGTGACT
Found at i:96823643 original size:53 final size:52
Alignment explanation
Indices: 96823511--96823661 Score: 187
Period size: 53 Copynumber: 2.8 Consensus size: 52
96823501 ATAAGTGCGC
* **
96823511 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCT-GGCTATGGCATCGGTATAATGTGATAATGTGACT
*
96823564 CCGTATAAGACCATAGCTGGCCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGG-CTATGGCATCGGTATAATGTGATAATGTGACT
* *
96823617 CCGTATAAGACCAT-GTCTGAGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTG-GCTATGGCATCGGTAT-A-ATGTGA
96823662 ACCGTGTAAG
Statistics
Matches: 87, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
52 3 0.03
53 76 0.87
54 2 0.02
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (52 bp):
CCGTATAAGACCATAGCTGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:96825915 original size:3 final size:3
Alignment explanation
Indices: 96825909--96825954 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
96825899 TTGTTGTCCC
96825909 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
96825955 TTTCTTTGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:96826681 original size:15 final size:15
Alignment explanation
Indices: 96826661--96826691 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
96826651 CTTTCGACAC
96826661 TAAGACATCAAGTAA
1 TAAGACATCAAGTAA
96826676 TAAGACATCAAGTAA
1 TAAGACATCAAGTAA
96826691 T
1 T
96826692 CAATTAGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.13, G:0.13, T:0.23
Consensus pattern (15 bp):
TAAGACATCAAGTAA
Found at i:96828005 original size:1 final size:1
Alignment explanation
Indices: 96827963--96827993 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
96827953 TAGCGAGTGC
*
96827963 AAAAAAAAAAAAAAAAAAACAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
96827994 GCAAGATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.97, C:0.03, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:96828183 original size:2 final size:2
Alignment explanation
Indices: 96828176--96828200 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
96828166 ATTAAAGTAT
96828176 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
96828201 GAATTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96828895 original size:33 final size:33
Alignment explanation
Indices: 96828858--96828926 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
96828848 TATTTATGAC
96828858 TATTCTCTTACCTATTATAATTTACTATTTTGT
1 TATTCTCTTACCTATTATAATTTACTATTTTGT
* *
96828891 TATTCTCTTATCTATTATAATTTACTCTTTTGT
1 TATTCTCTTACCTATTATAATTTACTATTTTGT
96828924 TAT
1 TAT
96828927 GAATTATTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.23, C:0.14, G:0.03, T:0.59
Consensus pattern (33 bp):
TATTCTCTTACCTATTATAATTTACTATTTTGT
Found at i:96828979 original size:19 final size:20
Alignment explanation
Indices: 96828951--96828995 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
96828941 TACACAACCC
96828951 ATTA-TTTAATATAAT-TTT
1 ATTATTTTAATATAATATTT
*
96828969 ATTATTTTAATGTAATATTT
1 ATTATTTTAATATAATATTT
96828989 -TTATTTT
1 ATTATTTT
96828996 TTTTAGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 17 0.71
20 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTATTTTAATATAATATTT
Found at i:96833904 original size:136 final size:135
Alignment explanation
Indices: 96833660--96833935 Score: 473
Period size: 136 Copynumber: 2.0 Consensus size: 135
96833650 TGCTTCTGGG
96833660 TAGCTCTTTGCGTATTAATTTGTATCTATAGTAGACTATGTCTGCTGATCATCCTGTCTTAAAAT
1 TAGCTCTTTGCGTATTAATTTGTATCTATAGTAGACTATGTCTGCTGATCATCCTGTCTTAAAAT
* * *
96833725 CTAAAACTGTTGAAAATCAGTAGGGGAAATCATTGCTTCAGATCTTATTACCTTGACTATCTTAC
66 CTAAAACTGTTGAAAATCACTAGGAGAAACCATTGCTTCAGATCTTATTACCTTGACTATCTTAC
96833790 AAAGC
131 AAAGC
* *
96833795 ATAGCTCTTTTCGTATTAATTTGTATCTATAGTAGATTATGTCTGCTGATCATCCTGTCTTAAAA
1 -TAGCTCTTTGCGTATTAATTTGTATCTATAGTAGACTATGTCTGCTGATCATCCTGTCTTAAAA
*
96833860 TCTAAAACTGTTGATAATCACTA-GAGAAGACCATTGCTTCAGATCTTATTACCTTGACTATCTT
65 TCTAAAACTGTTGAAAATCACTAGGAGAA-ACCATTGCTTCAGATCTTATTACCTTGACTATCTT
96833924 ACAAAGC
129 ACAAAGC
96833931 TAGCT
1 TAGCT
96833936 GCTATAACAG
Statistics
Matches: 133, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
135 9 0.07
136 124 0.93
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (135 bp):
TAGCTCTTTGCGTATTAATTTGTATCTATAGTAGACTATGTCTGCTGATCATCCTGTCTTAAAAT
CTAAAACTGTTGAAAATCACTAGGAGAAACCATTGCTTCAGATCTTATTACCTTGACTATCTTAC
AAAGC
Found at i:96834248 original size:13 final size:14
Alignment explanation
Indices: 96834230--96834259 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
96834220 AATCCATCTT
96834230 TTTTGAC-TTTTTC
1 TTTTGACTTTTTTC
96834243 TTTTGACTTTTTTC
1 TTTTGACTTTTTTC
96834257 TTT
1 TTT
96834260 GCTGTCAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.07, C:0.13, G:0.07, T:0.73
Consensus pattern (14 bp):
TTTTGACTTTTTTC
Found at i:96834903 original size:16 final size:16
Alignment explanation
Indices: 96834882--96834913 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
96834872 ATATAGAAGT
*
96834882 CAATGAGTTGTATTAG
1 CAATGAGCTGTATTAG
96834898 CAATGAGCTGTATTAG
1 CAATGAGCTGTATTAG
96834914 GGTGTGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.34
Consensus pattern (16 bp):
CAATGAGCTGTATTAG
Found at i:96836927 original size:11 final size:12
Alignment explanation
Indices: 96836910--96836942 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
96836900 CTCAAGATTT
96836910 TATTTTTCTAAA
1 TATTTTTCTAAA
*
96836922 -ATTTTTATAAA
1 TATTTTTCTAAA
96836933 TATTTTTCTA
1 TATTTTTCTA
96836943 TTTTGTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (12 bp):
TATTTTTCTAAA
Found at i:96840144 original size:22 final size:22
Alignment explanation
Indices: 96840101--96840145 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
96840091 TCATATTAGT
* *
96840101 TTTCATATCATGTTATAGCATA
1 TTTCATATCATATCATAGCATA
* *
96840123 TTTCATATCTTATCATATCATA
1 TTTCATATCATATCATAGCATA
96840145 T
1 T
96840146 CATATTATAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.16, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTCATATCATATCATAGCATA
Found at i:96845795 original size:30 final size:30
Alignment explanation
Indices: 96845759--96845818 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
96845749 TTCCCAAGCC
*
96845759 TAGGGGAAAAAGTATAATTATGCAAAAGTT
1 TAGGGGAAAAAATATAATTATGCAAAAGTT
* * *
96845789 TAGGGGAAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAATATAATTATGCAAAAGTT
96845819 CGTAGTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.05, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAATATAATTATGCAAAAGTT
Found at i:96848911 original size:43 final size:43
Alignment explanation
Indices: 96848867--96848948 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
96848857 GAATGAATGT
*
96848867 TTTC-GTGTGGTCCTCTGGATCATTTTATTAGAGACTGCCATG
1 TTTCGGTGTGGTCCTCCGGATCATTTTATTAGAGACTGCCATG
*
96848909 TTTCGGTGTGGTTCTCCGGATCATTTTATTAGAGACTGCC
1 TTTCGGTGTGGTCCTCCGGATCATTTTATTAGAGACTGCC
96848949 CGAGAGAGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
42 4 0.11
43 33 0.89
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (43 bp):
TTTCGGTGTGGTCCTCCGGATCATTTTATTAGAGACTGCCATG
Found at i:96872594 original size:73 final size:73
Alignment explanation
Indices: 96872475--96872753 Score: 352
Period size: 73 Copynumber: 3.8 Consensus size: 73
96872465 TTGTTTTTTC
**
96872475 CAAAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAAT
1 CAAAAATCGACTCATATTGCGAGAAGTGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAAT
96872540 TTATGTTT
66 TTATGTTT
*
96872548 CAAAAATTGACTCATATTGCGAGAAGTGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAAT
1 CAAAAATCGACTCATATTGCGAGAAGTGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAAT
96872613 TTATGTTT
66 TTATGTTT
* * * * *
96872621 CAAAATTTGACTCATATTGCGAGAGGCGAGTCAAGCCTCAGGT--CATGCTGAGGTA-TTTTAAT
1 CAAAAATCGACTCATATTGCGAGAAGTGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAAT
*
96872683 TCCTGTTGTTT
66 T--T-ATGTTT
* * ** * *
96872694 C-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTT
1 CAAAAATCGACTCATATTGCGAGAAGTGAGTCAAGCCTCAGGTCACACGCT-GAGGTATTTT
96872754 CAAATTCAAA
Statistics
Matches: 184, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
70 8 0.04
71 11 0.06
72 35 0.19
73 117 0.64
74 10 0.05
75 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (73 bp):
CAAAAATCGACTCATATTGCGAGAAGTGAGTCAAGCCTCAGGTCACACGCTGAGGTATTTTTAAT
TTATGTTT
Found at i:96872892 original size:73 final size:71
Alignment explanation
Indices: 96872801--96873150 Score: 323
Period size: 73 Copynumber: 4.9 Consensus size: 71
96872791 CTAAAATTGA
* ** *
96872801 CTCATAGTGCGAGAGGTGAGTCAAGCCTCAGGTCATGCTGAGGTATTTTAATTCCTTTTGTTTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTAATT--TTTTGTTTCA
96872866 AAAATCAG
64 AAAATCAG
* * * * * *
96872874 CTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTG-GGTATTCTT-AGTTTATGTTTTAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATT-TTAATTTTTTGTTTCAA
*
96872937 AAAT-TG
65 AAATCAG
* ** *
96872943 ACTCATAGTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCCCTTTGTTTC
1 -CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTAATT--TTTTGTTTC
96873008 AAAAATCAG
63 AAAAATCAG
* * * * * *
96873017 CTCATATTGCAAGGGGTGAGTTGAGCCTCGGGGCACGCTGGGGTATTCTTAATTTTTGTTTTTC-
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATT-TTAATTTTT-TGTTTCA
*
96873081 AAAATCAA
64 AAAATCAG
* * * * * *
96873089 CTCGTATTGCGAAAAGTGAGTTGAGCCTCAGTTCACATGCTGAGATATTTT-AGTTTTTGTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC--GCTGAGGTATTTTAATTTTTTGTTT
96873151 TTAATGTCTG
Statistics
Matches: 221, Mismatches: 45, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
69 1 0.00
70 49 0.22
71 12 0.05
72 50 0.23
73 93 0.42
74 16 0.07
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.35
Consensus pattern (71 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTAATTTTTTGTTTCAAA
AATCAG
Found at i:96873051 original size:143 final size:144
Alignment explanation
Indices: 96872793--96873078 Score: 511
Period size: 143 Copynumber: 2.0 Consensus size: 144
96872783 TTACTTTCCT
* *
96872793 AAAATTGACTCATAGTGCGAGAGGTGAGTCAAGCCTCAGGTCATGCTGAGGTATTTTAATTCCTT
1 AAAATTGACTCATAGTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCCCT
*
96872858 TTGTTTCAAAAATCAGCTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT-GGGTATTCT
66 TTGTTTCAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGGGGTATTCT
*
96872922 TAGTTTATGTTTTA
131 TAATTTATGTTTTA
96872936 AAAATTGACTCATAGTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCCCT
1 AAAATTGACTCATAGTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCCCT
*
96873001 TTGTTTCAAAAATCAGCTCATATTGCAAGGGGTGAGTTGAGCCTCGGGGCACGCTGGGGTATTCT
66 TTGTTTCAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGGGGTATTCT
*
96873066 TAATTTTTGTTTT
131 TAATTTATGTTTT
96873079 TCAAAATCAA
Statistics
Matches: 136, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
143 116 0.85
144 20 0.15
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (144 bp):
AAAATTGACTCATAGTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCCCT
TTGTTTCAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGGGGTATTCT
TAATTTATGTTTTA
Found at i:96876635 original size:16 final size:17
Alignment explanation
Indices: 96876594--96876642 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
96876584 CCATTGGTTT
*
96876594 ATTTTAAGTTCAAATTA
1 ATTTTAAGTTCAAAATA
*
96876611 ATTTT-AGTT-AAAATC
1 ATTTTAAGTTCAAAATA
96876626 ATTTTAAGTTCAAAATA
1 ATTTTAAGTTCAAAATA
96876643 TTGCAGGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 9 0.33
16 8 0.30
17 10 0.37
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (17 bp):
ATTTTAAGTTCAAAATA
Found at i:96877764 original size:13 final size:13
Alignment explanation
Indices: 96877748--96877774 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96877738 TACTATGGGT
96877748 AATCATTATGCAA
1 AATCATTATGCAA
96877761 AATCATTATGCAA
1 AATCATTATGCAA
96877774 A
1 A
96877775 GAAATTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (13 bp):
AATCATTATGCAA
Found at i:96893605 original size:3 final size:3
Alignment explanation
Indices: 96893597--96893653 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
96893587 CAATATCTAA
96893597 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
96893645 ATT ATT ATT
1 ATT ATT ATT
96893654 TTTAAACTAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:96894264 original size:14 final size:13
Alignment explanation
Indices: 96894233--96894272 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
96894223 ATTTTACTAA
96894233 ATTTTTCAAAAAT
1 ATTTTTCAAAAAT
*
96894246 ATTTTTCAAAAGT
1 ATTTTTCAAAAAT
*
96894259 ATTTTTTAAAAAT
1 ATTTTTCAAAAAT
96894272 A
1 A
96894273 ATGTTAAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (13 bp):
ATTTTTCAAAAAT
Done.