Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 330 of 335
Found at i:96894372 original size:2 final size:2
Alignment explanation
Indices: 96894365--96894407 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
96894355 TCTTTTTCTT
96894365 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96894407 T
1 T
96894408 TTTGTGATTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:96895178 original size:26 final size:26
Alignment explanation
Indices: 96895142--96895225 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
96895132 TGATACAAAT
*
96895142 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
96895168 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
96895194 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
96895220 TGATAA
1 TGATAA
96895226 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:96896729 original size:26 final size:26
Alignment explanation
Indices: 96896666--96896741 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
96896656 AAAAGTAGCT
* * *
96896666 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-GTGGA
*
96896694 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGGTGGA
96896720 AAATTACTGTTATACCCCTAGG
1 AAATTACTGTTATACCCCTAGG
96896742 GTTAATTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 25 0.57
27 1 0.02
28 18 0.41
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTGGA
Found at i:96896885 original size:27 final size:27
Alignment explanation
Indices: 96896846--96896983 Score: 152
Period size: 27 Copynumber: 5.1 Consensus size: 27
96896836 GGAAGCGTTT
*
96896846 TGGTGGCTATGCCACAAATATCTGATC
1 TGGTGGCTCTGCCACAAATATCTGATC
96896873 TGGTGGCTCTGCCACAAATATCTGATC
1 TGGTGGCTCTGCCACAAATATCTGATC
* * *
96896900 TGGTGGCTCTGCCACATATGTCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGATC
* * * *
96896927 TGGTGGCCCTACCACGATTATCTGTATC
1 TGGTGGCTCTGCCACAAATATCTG-ATC
* * * *
96896955 TGGTGACTCTGTCAC-ATTATCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGATC
96896981 TGG
1 TGG
96896984 CAGCCATGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.05
27 76 0.81
28 13 0.14
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAAATATCTGATC
Found at i:96896929 original size:54 final size:55
Alignment explanation
Indices: 96896846--96896983 Score: 172
Period size: 54 Copynumber: 2.5 Consensus size: 55
96896836 GGAAGCGTTT
* * * * *
96896846 TGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-ATC
1 TGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTACCACAAATATCTGTATC
* * *
96896900 TGGTGGCTCTGCCACATATGTCTGTTCTGGTGGCCCTACCACGATTATCTGTATC
1 TGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTACCACAAATATCTGTATC
* *
96896955 TGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TGGTGGCTCTGCCACATATATCTGTTCTGG
96896984 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 54 0.75
55 18 0.25
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (55 bp):
TGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTACCACAAATATCTGTATC
Found at i:96899098 original size:15 final size:17
Alignment explanation
Indices: 96899078--96899109 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
96899068 CAGGTACTAG
96899078 TTAGGT-CCAAA-AAAT
1 TTAGGTACCAAATAAAT
96899093 TTAGGTACCAAATAAAT
1 TTAGGTACCAAATAAAT
96899110 ATAAGTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (17 bp):
TTAGGTACCAAATAAAT
Found at i:96902285 original size:15 final size:16
Alignment explanation
Indices: 96902265--96902297 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
96902255 ACTTCTTTAA
96902265 TAATTTCGA-TAATTT
1 TAATTTCGATTAATTT
*
96902280 TAATTTCTATTAATTT
1 TAATTTCGATTAATTT
96902296 TA
1 TA
96902298 TGGTCTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (16 bp):
TAATTTCGATTAATTT
Found at i:96904197 original size:49 final size:47
Alignment explanation
Indices: 96904140--96904278 Score: 145
Period size: 49 Copynumber: 2.9 Consensus size: 47
96904130 TGAACCATTA
* * * *
96904140 AAATACGTTATGGACGAACCACTAATCGTTGCAAATAAACTA-TCGATT
1 AAATACGTTGTGGATGAACCACTAGTCGTT-CAAATAAACTACT-GACT
* * *
96904188 GAAATACGTTGTGGATGAATCACTAGTCATTACAGATAAACTACTGACT
1 -AAATACGTTGTGGATGAACCACTAGTCGTT-CAAATAAACTACTGACT
*
96904237 AGAATACATTGTGGATGAACCACTAGTCGTTCAAGATAAACT
1 A-AATACGTTGTGGATGAACCACTAGTCGTTCAA-ATAAACT
96904279 GCCGACTCTC
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
48 3 0.04
49 71 0.95
50 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (47 bp):
AAATACGTTGTGGATGAACCACTAGTCGTTCAAATAAACTACTGACT
Found at i:96907248 original size:86 final size:85
Alignment explanation
Indices: 96907104--96907275 Score: 326
Period size: 86 Copynumber: 2.0 Consensus size: 85
96907094 AGTGATAGTA
*
96907104 TGTCTATTTGCACCTTAATTATTAATTAACAATTTTTTATTGATTTCAACACAAGTTTAATGTAT
1 TGTCTATTTGCACCTTAATCATTAATTAACAATTTTTTATTGATTTCAACACAAGTTTAATGTAT
96907169 TAAAAATATACACTTTTAAC
66 TAAAAATATACACTTTTAAC
96907189 TGTCTATTTGCACCCTTAATCATTAATTAACAATTTTTTATTGATTTCAACACAAGTTTAATGTA
1 TGTCTATTTGCA-CCTTAATCATTAATTAACAATTTTTTATTGATTTCAACACAAGTTTAATGTA
96907254 TTAAAAATATACACTTTTAAC
65 TTAAAAATATACACTTTTAAC
96907275 T
1 T
96907276 TTTTTTTTAA
Statistics
Matches: 85, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
85 12 0.14
86 73 0.86
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (85 bp):
TGTCTATTTGCACCTTAATCATTAATTAACAATTTTTTATTGATTTCAACACAAGTTTAATGTAT
TAAAAATATACACTTTTAAC
Found at i:96915828 original size:3 final size:3
Alignment explanation
Indices: 96915822--96915882 Score: 95
Period size: 3 Copynumber: 20.3 Consensus size: 3
96915812 ATTTCTTTAC
*
96915822 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
96915870 TTT TAT TTT TAT T
1 TAT TAT TAT TAT T
96915883 TGGTTCTTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (3 bp):
TAT
Found at i:96921130 original size:18 final size:19
Alignment explanation
Indices: 96921107--96921149 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
96921097 CTCCAACAGT
96921107 AAAAAAA-ACTGAAAAA-GA
1 AAAAAAACACT-AAAAACGA
96921125 AAAAAAACACTAAAAACGA
1 AAAAAAACACTAAAAACGA
96921144 AAAAAA
1 AAAAAA
96921150 TAAAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.79, C:0.09, G:0.07, T:0.05
Consensus pattern (19 bp):
AAAAAAACACTAAAAACGA
Found at i:96921131 original size:19 final size:19
Alignment explanation
Indices: 96921107--96921149 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
96921097 CTCCAACAGT
96921107 AAAAAAAACTGAAAAA-GAA
1 AAAAAAAACT-AAAAACGAA
*
96921126 AAAAAACACTAAAAACGAA
1 AAAAAAAACTAAAAACGAA
96921145 AAAAA
1 AAAAA
96921150 TAAAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.79, C:0.09, G:0.07, T:0.05
Consensus pattern (19 bp):
AAAAAAAACTAAAAACGAA
Found at i:96921314 original size:19 final size:20
Alignment explanation
Indices: 96921285--96921336 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
96921275 AAGAAAATAA
*
96921285 AAGGAAAGAAAGGAGAA-GAG
1 AAGG-AAGAAAGAAGAAGGAG
96921305 AAGGAAGAAA-AAGAAGGAG
1 AAGGAAGAAAGAAGAAGGAG
*
96921324 AAGGAAAAAAGAA
1 AAGGAAGAAAGAA
96921337 AGAAAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 4 0.14
19 18 0.64
20 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (20 bp):
AAGGAAGAAAGAAGAAGGAG
Found at i:96921326 original size:15 final size:15
Alignment explanation
Indices: 96921269--96921348 Score: 54
Period size: 15 Copynumber: 4.9 Consensus size: 15
96921259 AATCAACAGT
*
96921269 AAGGAGAAGAAAATAA
1 AAGGAGAAGAAAA-AG
*
96921285 AAGGA-AAGAAAGGAG
1 AAGGAGAAGAAA-AAG
96921300 AAGAGAAGGAAGAAAAAG
1 AAG-G-A-GAAGAAAAAG
96921318 AAGGAGAAGGAAAAAAG
1 AAGGAGAA-G-AAAAAG
* *
96921335 AAAGAAAAGAAAAA
1 AAGGAGAAGAAAAA
96921349 AAAAGGTATA
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
15 18 0.35
16 9 0.17
17 14 0.27
18 5 0.10
19 6 0.12
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (15 bp):
AAGGAGAAGAAAAAG
Found at i:96921502 original size:26 final size:25
Alignment explanation
Indices: 96921445--96921510 Score: 91
Period size: 26 Copynumber: 2.7 Consensus size: 25
96921435 TTGTTGTTAG
*
96921445 TTATTAATATTGTTAGTAAAAAATCC
1 TTATTATTATTGTTAGTAAAAAA-CC
96921471 TTATTATTATTGTTAGTAAAAAA-C
1 TTATTATTATTGTTAGTAAAAAACC
*
96921495 -TATAATTATTGTTAGT
1 TTATTATTATTGTTAGT
96921511 TATTATTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 15 0.39
24 1 0.03
26 22 0.58
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (25 bp):
TTATTATTATTGTTAGTAAAAAACC
Found at i:96929491 original size:145 final size:145
Alignment explanation
Indices: 96928776--96929805 Score: 1059
Period size: 145 Copynumber: 7.1 Consensus size: 145
96928766 ATAAGTAAAA
* * * * *
96928776 TATTTTCCTATATTATTT-TTTATATTATTTTAGCA-AAAATGTTTCAAATGTATTATGTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* ** * * *
96928839 TTTTTTTATATTAATTTAATAAATAACATTGATTTTGGCACTTTTTTCGTATTTTTTTATTTTCA
66 -TTTTTTATATT-TTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA----TTT-TTTTCG
*
96928904 TATCTTATTTTTTAAAATATAT
124 TATATTATTTTTTAAAATATAT
*
96928926 TACTTTCGTATTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAA
1 TATTTTCG---TATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAA
* *
96928991 GTGTTTTTTATATTTTTTAATAAATAATCCTGATTTTAGCACTTTATTTGTA-TTTTTTCGTAT-
63 GTGTTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATA
*
96929054 CT-TTTTTTAAAATATAT
128 TTATTTTTTAAAATATAT
96929071 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* **
96929136 TTTTTTATATTTTTTAATAAATAACCCTGA-TTTAGTA-TATTATTTTTTAAAATATATTATTTT
66 TTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACT-TTA----TT--CGTAT-TT-TTTT
*
96929199 CGTATTTTATTTTTT----TATAT
122 CGTATATTATTTTTTAAAATATAT
* * **** * * * * * *
96929219 TATTTTAGCAAAAAATGT-TTCAAATGTA--TTAGGTATATTATG--T-AAGTGT-TT-TTT-A-
1 TATTTTCGTATTTTATTTCTTTATAT-TATTTTA-GTACATAATGTTTCAAATGTATTATTTAAG
** * *
96929274 ----TACTA-A---TTTAATAAATAACCCTGATTTT-GACACTTTCTTCGTA-TTTTTTCGTATC
64 TGTTTTTTATATTTTTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTATTTTTTTCGTATA
96929329 TTATTTTTTAAAATATAT
128 TTATTTTTTAAAATATAT
*
96929347 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGT-
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
*
96929411 ATTTTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATT
66 TTTTTTATATTTTTT-AATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATT
96929476 ATTTTTTAAAATATAT
130 ATTTTTTAAAATATAT
* * * * ** *
96929492 TATTTTCTTATTTTATTT-TTTATA-TATTTTAGCAAAAAAAATTTCAAATGTATTACTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* * * * *
96929555 TTTCTTTATATTAATTTACTAAATAACTCTGATTTT-GATACTTTCTTCGTAATTTTTTTATTTT
66 TTT-TTTATATT-TTTTAATAAATAACCCTGATTTTAG-CACTTTATTCGT-A----TTT-TTTT
96929619 CGTATATTATTTTTTAAAATATAT
122 CGTATATTATTTTTTAAAATATAT
96929643 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
*
96929708 TTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTTGTATATTA
66 TTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATTA
96929773 TTTTTTAAAATATAT
131 TTTTTTAAAATATAT
*
96929788 TATTTTGGTATTTTATTT
1 TATTTTCGTATTTTATTT
96929806 TAGCATAAAA
Statistics
Matches: 738, Mismatches: 83, Indels: 123
0.78 0.09 0.13
Matches are distributed among these distances:
124 18 0.02
125 2 0.00
127 2 0.00
128 18 0.02
129 16 0.02
130 3 0.00
131 1 0.00
132 24 0.03
133 8 0.01
134 4 0.01
135 2 0.00
136 3 0.00
139 3 0.00
140 2 0.00
141 10 0.01
142 89 0.12
143 37 0.05
144 44 0.06
145 151 0.20
146 11 0.01
147 23 0.03
148 20 0.03
149 2 0.00
150 19 0.03
151 76 0.10
152 21 0.03
153 76 0.10
154 27 0.04
155 26 0.04
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (145 bp):
TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
TTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATTA
TTTTTTAAAATATAT
Found at i:96929729 original size:296 final size:294
Alignment explanation
Indices: 96929170--96929956 Score: 1056
Period size: 296 Copynumber: 2.7 Consensus size: 294
96929160 CCCTGATTTA
*
96929170 GTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAAAT
1 GTATATTATTTTTTAAAATATATTATTTTCTTATTTTA-TTTTTTATA-TATTTTAGCAAAAAAT
* * *
96929235 GTTTCAAATGTATTAGGTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCTGATT
64 ATTTCAAATGTATTA-CT-TA--A-GT--GT-TTTTTTATATTAATTTAATAAATAA-CCTGATT
*
96929300 TTGACACTTTCTTCGTA-----TT-TTTTCGTATCTTATTTTTTAAAATATATTATTTTCGTATT
120 TTGACACTTTCTTCGTATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATT
*
96929359 TTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTATATTTT
185 TTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTATATTTT
96929424 TTCAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTC
250 TTCAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTC
*
96929469 GTATATTATTTTTTAAAATATATTATTTTCTTATTTTATTTTTTATATATTTTAGCAAAAAAAAT
1 GTATATTATTTTTTAAAATATATTATTTTCTTATTTTATTTTTTATATATTTTAGCAAAAAATAT
* * *
96929534 TTCAAATGTATTACTTAAGTGTTTCTTTATATTAATTTACTAAATAACTCTGATTTTGATACTTT
66 TTCAAATGTATTACTTAAGTGTTTTTTTATATTAATTTAATAAATAAC-CTGATTTTGACACTTT
96929599 CTTCGTAATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
130 CTTCGT-ATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
*
96929664 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTT-AATAA
194 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGT-ATTTTTATATTTTTTCAATAA
*
96929728 ATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTT
258 ATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTC
** * *
96929765 GTATATTATTTTTTAAAATATATTA---T-TT-TGGTA----TT-T-TATTTTAGCATAAAATCT
1 GTATATTATTTTTTAAAATATATTATTTTCTTATTTTATTTTTTATATATTTTAGCAAAAAATAT
* * * * **
96929819 TTCAAATGTATTATTTAAGT-TTTTTTTATATTAATTTAATAAATAACCTGACTTTGGCACCTGG
66 TTCAAATGTATTACTTAAGTGTTTTTTTATATTAATTTAATAAATAACCTGATTTTGACACTTTC
* * * * **
96929883 TTCGTATTTTTTTATTTTTGGATTTTATTTTTTAAAATATACTATTTTTATATTTTATTT-TTTA
131 TTCGTATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTA
96929947 TATTATTTTA
196 TATTATTTTA
96929957 ACAAAAAACT
Statistics
Matches: 447, Mismatches: 32, Indels: 36
0.87 0.06 0.07
Matches are distributed among these distances:
281 14 0.03
282 49 0.11
283 16 0.04
284 25 0.06
285 34 0.08
286 1 0.00
287 2 0.00
288 1 0.00
289 43 0.10
290 3 0.01
291 3 0.01
292 4 0.01
293 2 0.00
295 4 0.01
296 157 0.35
297 43 0.10
298 9 0.02
299 37 0.08
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.56
Consensus pattern (294 bp):
GTATATTATTTTTTAAAATATATTATTTTCTTATTTTATTTTTTATATATTTTAGCAAAAAATAT
TTCAAATGTATTACTTAAGTGTTTTTTTATATTAATTTAATAAATAACCTGATTTTGACACTTTC
TTCGTATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTA
TATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTATATTTTTTCAATAAATA
ACCCTGATTTTAGCACTTTATTCGTATTTTTTTC
Found at i:96929805 original size:132 final size:134
Alignment explanation
Indices: 96929668--96929943 Score: 351
Period size: 132 Copynumber: 2.1 Consensus size: 134
96929658 TTTCTTTATA
* * * *
96929668 TTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATT-TTTTAATAAATAA
1 TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAGTGTTTTTTATATTAATTTAATAAATAA
* * * * *
96929732 CCCTGATTTTAGCACTTTATTCGTA-TTT-TTTTTGTATATTATTTTTTAAAATATATTATTTTG
66 -CCTGACTTTAGCACCTGATTCGTATTTTATTTTTGGATATTATTTTTTAAAATATACTATTTTG
*
96929795 GTATT
130 ATATT
* *
96929800 TTATTTTAGCATAAAATCTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAA
1 TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAGTGTTTTTTATATTAATTTAATAAATAA
* * *
96929865 CCTGACTTTGGCACCTGGTTCGTATTTTTTTATTTTTGGATTTTATTTTTTAAAATATACTATTT
66 CCTGACTTTAGCACCTGATTCGTA---TTTTATTTTTGGATATTATTTTTTAAAATATACTATTT
*
96929930 TTATATT
128 TGATATT
96929937 TTATTTT
1 TTATTTT
96929944 TTATATTATT
Statistics
Matches: 122, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
132 65 0.53
133 12 0.10
136 3 0.02
137 42 0.34
ACGTcount: A:0.29, C:0.07, G:0.08, T:0.57
Consensus pattern (134 bp):
TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAGTGTTTTTTATATTAATTTAATAAATAA
CCTGACTTTAGCACCTGATTCGTATTTTATTTTTGGATATTATTTTTTAAAATATACTATTTTGA
TATT
Found at i:96929889 original size:572 final size:565
Alignment explanation
Indices: 96928776--96929963 Score: 1410
Period size: 572 Copynumber: 2.1 Consensus size: 565
96928766 ATAAGTAAAA
* * *
96928776 TATTTTCCTATATTATTTTTTATATTATTTTAGCAAAAATGTTTCAAATGTATTATGTAAGTGTT
1 TATTTTCATATTTTATTTTTTATATTATTTTAGCAAAAATGTTTCAAATGTATTATGTAAG-GTA
* * *
96928841 TTTTTATATTAATTTAATAAATAACATTGATTTTGGCACTTTTTTCGTATTTTTTTATTTTCATA
65 TTTTTATATTAATTTAATAAATAACACTGATTTTAGCACTTTATTCGTA---TTTTATTTTCATA
* * * * *
96928906 TCTTATTTTTTAAAATATATTACTTTCGTATTATTTTATTTCTTTATATTATTTTAGTACATAAT
127 TATTATTTTTTAAAATATATTACTTTC-TATTATTTTATTTCTTTATATTATTTTAGCAAAAAAA
* * * *
96928971 GTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTAATAAATAATCCTGATTTTAGCACTTT
191 ATTTCAAATGTATTACTTAAGTGTTTTTTATATTATTTAATAAATAATCCTGATTTTAACACTTT
96929036 ATTTGTATTTTTTCGTATCTTTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATT
256 ATTTGTATTTTTTCGTATCTTTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATT
96929101 TTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTAATAAATAACCCTGA
321 TTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTAATAAATAACCCTGA
**
96929166 TTTAGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAA
386 TTTAGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTGGTATATTATTTTAGCAAA
*
96929231 AAATGTTTCAAATGTATTAGGTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCT
451 AAATCTTTCAAATG--TTA-GTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCT
* * * * *
96929296 GATTTTGACACTTTCTTCGTA-TT-TTTTCGTATCTTATTTTTTAAAATATAT
513 GACTTTGACACCTGCTTCGTATTTATTTTCGGATCTTATTTTTTAAAATATAC
* * * * *
96929347 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAA-GT
1 TATTTTCATATTTTATTT-TTTATATTATTTTAGCA-AAAATGTTTCAAATGTATTATGTAAGGT
* * *
96929411 ATTTTTATATT-TTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTA-TTT-TTTTCGTAT
64 ATTTTTATATTAATTT-AATAAATAACACTGATTTTAGCACTTTATTCGTATTTTATTTTCATAT
*
96929473 ATTATTTTTTAAAATATATTA-TTT-TCTTATTTTATTT-TTTATA-TATTTTAGCAAAAAAAAT
128 ATTATTTTTTAAAATATATTACTTTCTATTATTTTATTTCTTTATATTATTTTAGCAAAAAAAAT
*
96929534 TTCAAATGTATTACTTAAGTGTTTCTTTATATTAATTTACTAAATAA-CTCTGATTTTGATACTT
193 TTCAAATGTATTACTTAAGTGTTT-TTTATATT-ATTTAATAAATAATC-CTGATTTT-A-AC--
* * *
96929598 TCTTCGTAATTT-TTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTC
251 ACTT--T-ATTTGTATT-TTTTCGTAT-CT-TTTTTTAAAATATATTATTTTCGTATTTTATTTC
96929662 TTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTAATA
310 TTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTAATA
* *** *
96929727 AATAACCCTGATTTTAGCACTTTATTCGTATTTTTT-TTGTATATTATTTT-TTAAAATATATTA
375 AATAACCCTGA-TTTAG---TATA-T--TATTTTTTAAAATATATTATTTTCGT---AT-T-TTA
* * *
96929790 TTTTGGTATTTTATTTTAGCATAAAATCTTTCAAATG-TA-T-TA-T-T-TAAGTTTTTTTTATA
428 TTTTGGTATATTATTTTAGCAAAAAATCTTTCAAATGTTAGTATATTATGTAAGTGTTTTTTATA
* * * * *
96929849 TTAATTTAATAAATAA-CCTGACTTTGGCACCTGGTTCGTATTTTTTTATTTTTGGATTTTATTT
493 CTAATTTAATAAATAACCCTGACTTTGACACCTGCTTCGTA----TTTATTTTCGGATCTTATTT
96929913 TTTAAAATATAC
554 TTTAAAATATAC
* *
96929925 TATTTTTATATTTTATTTTTTATATTATTTTAACAAAAA
1 TATTTTCATATTTTATTTTTTATATTATTTTAGCAAAAA
96929964 ACTCATCACC
Statistics
Matches: 529, Mismatches: 54, Indels: 63
0.82 0.08 0.10
Matches are distributed among these distances:
561 36 0.07
562 15 0.03
563 31 0.06
564 1 0.00
565 4 0.01
566 28 0.05
567 6 0.01
569 4 0.01
570 16 0.03
571 59 0.11
572 144 0.27
573 57 0.11
574 1 0.00
575 1 0.00
576 8 0.02
577 19 0.04
578 51 0.10
579 10 0.02
580 2 0.00
581 1 0.00
582 35 0.07
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (565 bp):
TATTTTCATATTTTATTTTTTATATTATTTTAGCAAAAATGTTTCAAATGTATTATGTAAGGTAT
TTTTATATTAATTTAATAAATAACACTGATTTTAGCACTTTATTCGTATTTTATTTTCATATATT
ATTTTTTAAAATATATTACTTTCTATTATTTTATTTCTTTATATTATTTTAGCAAAAAAAATTTC
AAATGTATTACTTAAGTGTTTTTTATATTATTTAATAAATAATCCTGATTTTAACACTTTATTTG
TATTTTTTCGTATCTTTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGT
ACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTAATAAATAACCCTGATTTAG
TATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTGGTATATTATTTTAGCAAAAAATC
TTTCAAATGTTAGTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCCTGACTTTGA
CACCTGCTTCGTATTTATTTTCGGATCTTATTTTTTAAAATATAC
Found at i:96930532 original size:3 final size:3
Alignment explanation
Indices: 96930514--96930572 Score: 59
Period size: 3 Copynumber: 19.7 Consensus size: 3
96930504 CCTCCTCTCT
* * *
96930514 TTC TTT TTC TTTC TTC TTC TTC -TC TTC TT- TCC TTC TTC TCTC TTT
1 TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC
96930559 TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TT
96930573 TGTTCCCGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
2 3 0.07
3 37 0.80
4 6 0.13
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:96930548 original size:16 final size:15
Alignment explanation
Indices: 96930511--96930573 Score: 71
Period size: 13 Copynumber: 4.3 Consensus size: 15
96930501 TCTCCTCCTC
*
96930511 TCTTTCTTTTTCT-T
1 TCTTTCTTCTTCTCT
96930525 TC-TTCTTCTTCTCT
1 TCTTTCTTCTTCTCT
96930539 TCTTTCCTTCTTCTC-
1 TCTTT-CTTCTTCTCT
96930554 TCTTT-TTCTTCTTCT
1 TCTTTCTTCTTC-TCT
96930569 TCTTT
1 TCTTT
96930574 GTTCCCGAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
13 15 0.35
14 7 0.16
15 12 0.28
16 9 0.21
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (15 bp):
TCTTTCTTCTTCTCT
Found at i:96930742 original size:20 final size:19
Alignment explanation
Indices: 96930717--96930760 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
96930707 TTTTTTTTTA
96930717 TTTTTTTCGTTTTCAGTGTT
1 TTTTTTTCGTTTTCAGT-TT
*
96930737 TTTTTTTCTTTTTCAGTTT
1 TTTTTTTCGTTTTCAGTTT
96930756 TTTTT
1 TTTTT
96930761 ACTATTGGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.05, C:0.09, G:0.09, T:0.77
Consensus pattern (19 bp):
TTTTTTTCGTTTTCAGTTT
Found at i:96932104 original size:18 final size:18
Alignment explanation
Indices: 96932063--96932108 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
96932053 ATGATATTTT
* *
96932063 AATTAATAAAAAATTTAA
1 AATTAATAATAAATTAAA
*
96932081 ATTTAATAATAAATTAAA
1 AATTAATAATAAATTAAA
96932099 AATTAA-AATA
1 AATTAATAATA
96932109 TCATATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AATTAATAATAAATTAAA
Found at i:96937519 original size:72 final size:72
Alignment explanation
Indices: 96937402--96937542 Score: 203
Period size: 72 Copynumber: 2.0 Consensus size: 72
96937392 CGCCCCTGAT
* * *
96937402 GAGCCCGGGAAATAGTCATTGCCCGGCAAATCCGGATGATAAGAAGTATCGGCCGAATGTGAATG
1 GAGCCCGGGAAATAGTCATTGCCCGGCAAATCCGGATGATAAGAAGTATCAGCCGAATATGAATA
96937467 CGATGAC
66 CGATGAC
* * * *
96937474 GAGCCCGGTAAATAGTCATTGCTCTGG-AAATTCGGATGATAAGAAGTATTAGCCGAATATGAAT
1 GAGCCCGGGAAATAGTCATTGC-CCGGCAAATCCGGATGATAAGAAGTATCAGCCGAATATGAAT
96937538 ACGAT
65 ACGAT
96937543 CGCTCAGACT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
72 58 0.95
73 3 0.05
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.22
Consensus pattern (72 bp):
GAGCCCGGGAAATAGTCATTGCCCGGCAAATCCGGATGATAAGAAGTATCAGCCGAATATGAATA
CGATGAC
Found at i:96939749 original size:138 final size:139
Alignment explanation
Indices: 96939576--96939856 Score: 465
Period size: 139 Copynumber: 2.0 Consensus size: 139
96939566 TATTTCTAAA
* *
96939576 ATTTTTAAAATTTTCAGATTCTATTTTTTAAAATATACTA-TTTTCGAATTTTATTTTTTATCTT
1 ATTTCTAAAATATTCAGATTCTATTTTTTAAAATATACTATTTTTCGAATTTTATTTTTTATCTT
* *
96939640 ATTTTAGTACATAATGTTTCAAATGTATTAATTTAGTGTTTTTAAAAAAACTCTGATTTTGTCCA
66 ATTTTAGTACATAATGTTTCAAATGTATTAATTTAGTGTTTTTAAAAAAACCCCGATTTTGTCCA
96939705 TTTGTTTGT
131 TTTGTTTGT
* * *
96939714 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTCGTATTTTATTTTTTATCTT
1 ATTTCTAAAATATTCAGATTCTATTTTTTAAAATATACTATTTTTCGAATTTTATTTTTTATCTT
* * *
96939779 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTAAAATAACCCCGATTTTGTCCC
66 ATTTTAGTACATAATGTTTCAAATGTATTAATTTAGTGTTTTTAAAAAAACCCCGATTTTGTCCA
96939844 TTTGTTTGT
131 TTTGTTTGT
96939853 ATTT
1 ATTT
96939857 TTATACTATT
Statistics
Matches: 132, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
138 36 0.27
139 96 0.73
ACGTcount: A:0.28, C:0.09, G:0.08, T:0.55
Consensus pattern (139 bp):
ATTTCTAAAATATTCAGATTCTATTTTTTAAAATATACTATTTTTCGAATTTTATTTTTTATCTT
ATTTTAGTACATAATGTTTCAAATGTATTAATTTAGTGTTTTTAAAAAAACCCCGATTTTGTCCA
TTTGTTTGT
Found at i:96939869 original size:111 final size:112
Alignment explanation
Indices: 96939747--96939968 Score: 392
Period size: 112 Copynumber: 2.0 Consensus size: 112
96939737 TTTTTTAAAA
*
96939747 TATACTATTTTTCGTATTTTA-TTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATT
1 TATACTATTTTTCGTATTTTATTTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTAGT
* * *
96939811 TTAGTGTTTTTAAAATAACCCCGATTTTGTCCCTTTGTTTGTATTTT
66 TCAGTGTTTTTAAAATAACCCCGATTTTGTCACTTTGTTTATATTTT
96939858 TATACTATTTTTCGTATTTTATTTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTAGT
1 TATACTATTTTTCGTATTTTATTTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTAGT
*
96939923 TCAGTGTTTTTAAAATAACCCTGATTTTGTCACTTTGTTTATATTT
66 TCAGTGTTTTTAAAATAACCCCGATTTTGTCACTTTGTTTATATTT
96939969 CTAAAATATT
Statistics
Matches: 105, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
111 21 0.20
112 84 0.80
ACGTcount: A:0.24, C:0.10, G:0.09, T:0.56
Consensus pattern (112 bp):
TATACTATTTTTCGTATTTTATTTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTAGT
TCAGTGTTTTTAAAATAACCCCGATTTTGTCACTTTGTTTATATTTT
Found at i:96940227 original size:138 final size:138
Alignment explanation
Indices: 96939858--96940584 Score: 1208
Period size: 138 Copynumber: 5.3 Consensus size: 138
96939848 TTTGTATTTT
*
96939858 TATACTATTTTTCGTATTTTATTTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTAGT
1 TATACTA-TTTTCGTATTTTA-TTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATT
* * * *
96939923 TCAGTGTTTTTAAAATAACCCTGATTTTGTCACTTTGTTTATATTTCTAAAATATTCGGATTTTC
64 TTAGTGTTTTTAAAATAACCCTGATTTTGTCCCTTTGTTTGTATTTCTAAAATATTCGGATTTTA
96939988 TTTTTTAAAA
129 TTTTTTAAAA
* *
96939998 TATACTATTTTCGTATTTTA-TTTTTATTTTATTTTAGTACATAATGTTTGAAATGTATTATTTT
1 TATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
* *
96940062 AGTGTTTTTAAAATAACCCTGATTTTGTCCCTTTGTTTATATTTCTAAAATATTTGGATTTTATT
66 AGTGTTTTTAAAATAACCCTGATTTTGTCCCTTTGTTTGTATTTCTAAAATATTCGGATTTTATT
96940127 TTTTAAAA
131 TTTTAAAA
* *
96940135 TATATTATTTTCGTATTTTATTTTTTATCTTATTTAAGTACATAATGTTTCAAATGTATTATTTT
1 TATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
* * * *
96940200 AGTGTTTTTAAAATAACCTTAATTTTGTCCCTTTGTTTGTATTTCTAAAATATTAGAATTTTATT
66 AGTGTTTTTAAAATAACCCTGATTTTGTCCCTTTGTTTGTATTTCTAAAATATTCGGATTTTATT
96940265 TTTTAAAA
131 TTTTAAAA
96940273 TATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
1 TATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
*
96940338 AGTGTTTTTAAAATAACCCTGATTTTGACCCTTTGTTTGTATTTCTAAAATATTCGGATTTTATT
66 AGTGTTTTTAAAATAACCCTGATTTTGTCCCTTTGTTTGTATTTCTAAAATATTCGGATTTTATT
96940403 TTTTAAAA
131 TTTTAAAA
96940411 TATACTATTTTCGTATTTTA-TTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
1 TATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
* * * *
96940475 AGTGTTTTTTAAATAACCCTAATTTTGTCCCTTTGTTTGTATTTTTAAAA-CTTCTGGATTTTAT
66 AGTGTTTTTAAAATAACCCTGATTTTGTCCCTTTGTTTGTATTTCTAAAATATTC-GGATTTTA-
96940539 TTTTTTAAAA
129 TTTTTTAAAA
*
96940549 TATACTATTTTCGTATTTTATTTTTTATATTATTTT
1 TATACTATTTTCGTATTTTATTTTTTATCTTATTTT
96940585 TATACTATTT
Statistics
Matches: 554, Mismatches: 29, Indels: 9
0.94 0.05 0.02
Matches are distributed among these distances:
136 3 0.01
137 227 0.41
138 290 0.52
139 27 0.05
140 7 0.01
ACGTcount: A:0.27, C:0.09, G:0.08, T:0.56
Consensus pattern (138 bp):
TATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
AGTGTTTTTAAAATAACCCTGATTTTGTCCCTTTGTTTGTATTTCTAAAATATTCGGATTTTATT
TTTTAAAA
Found at i:96940437 original size:275 final size:275
Alignment explanation
Indices: 96939858--96940584 Score: 1208
Period size: 275 Copynumber: 2.6 Consensus size: 275
96939848 TTTGTATTTT
*
96939858 TATACTATTTTTCGTATTTTATTTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTAGT
1 TATACTA-TTTTCGTATTTTA-TTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATT
* * * * *
96939923 TCAGTGTTTTTAAAATAACCCTGATTTTGTCACTTTGTTTATATTTCTAAAATATTCGGATTTTC
64 TTAGTGTTTTTAAAATAACCCTAATTTTGTCCCTTTGTTTGTATTTCTAAAATATT-GGATTTTA
* *
96939988 TTTTTTAAAATATACTATTTTCGTATTTTA-TTTTTATTTTATTTTAGTACATAATGTTTGAAAT
128 TTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAAT
* *
96940052 GTATTATTTTAGTGTTTTTAAAATAACCCTGATTTTGTCCCTTTGTTTATATTTCTAAAATATTT
193 GTATTATTTTAGTGTTTTTAAAATAACCCTGATTTTGACCCTTTGTTTATATTTCTAAAATATTC
96940117 GGATTTTATTTTTTAAAA
258 GGATTTTATTTTTTAAAA
* *
96940135 TATATTATTTTCGTATTTTATTTTTTATCTTATTTAAGTACATAATGTTTCAAATGTATTATTTT
1 TATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
* *
96940200 AGTGTTTTTAAAATAACCTTAATTTTGTCCCTTTGTTTGTATTTCTAAAATATTAGAATTTTATT
66 AGTGTTTTTAAAATAACCCTAATTTTGTCCCTTTGTTTGTATTTCTAAAATATT-GGATTTTATT
*
96940265 TTTTAAAATATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGT
130 TTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGT
*
96940330 ATTATTTTAGTGTTTTTAAAATAACCCTGATTTTGACCCTTTGTTTGTATTTCTAAAATATTCGG
195 ATTATTTTAGTGTTTTTAAAATAACCCTGATTTTGACCCTTTGTTTATATTTCTAAAATATTCGG
96940395 ATTTTATTTTTTAAAA
260 ATTTTATTTTTTAAAA
96940411 TATACTATTTTCGTATTTTA-TTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
1 TATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
* *
96940475 AGTGTTTTTTAAATAACCCTAATTTTGTCCCTTTGTTTGTATTTTTAAAACT-TCTGGATTTTAT
66 AGTGTTTTTAAAATAACCCTAATTTTGTCCCTTTGTTTGTATTTCTAAAA-TAT-TGGATTTTA-
96940539 TTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTT
128 TTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTT
96940585 TATACTATTT
Statistics
Matches: 423, Mismatches: 23, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
275 226 0.53
276 191 0.45
277 6 0.01
ACGTcount: A:0.27, C:0.09, G:0.08, T:0.56
Consensus pattern (275 bp):
TATACTATTTTCGTATTTTATTTTTTATCTTATTTTAGTACATAATGTTTCAAATGTATTATTTT
AGTGTTTTTAAAATAACCCTAATTTTGTCCCTTTGTTTGTATTTCTAAAATATTGGATTTTATTT
TTTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTA
TTATTTTAGTGTTTTTAAAATAACCCTGATTTTGACCCTTTGTTTATATTTCTAAAATATTCGGA
TTTTATTTTTTAAAA
Found at i:96940910 original size:11 final size:10
Alignment explanation
Indices: 96940878--96940911 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
96940868 ATAAATTTAT
96940878 AAATTAAATC
1 AAATTAAATC
96940888 TAAATTAAATC
1 -AAATTAAATC
96940899 AAATTCAAATC
1 AAATT-AAATC
96940910 AA
1 AA
96940912 CAATAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 5 0.23
11 17 0.77
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (10 bp):
AAATTAAATC
Found at i:96941090 original size:16 final size:16
Alignment explanation
Indices: 96941069--96941133 Score: 86
Period size: 14 Copynumber: 4.4 Consensus size: 16
96941059 TTGCTCCTTC
96941069 TTCTTCTTCTCTTCTT
1 TTCTTCTTCTCTTCTT
96941085 TTCTTCTTCTCTTC-T
1 TTCTTCTTCTCTTCTT
96941100 TTCTT-TTCTC-TCTT
1 TTCTTCTTCTCTTCTT
*
96941114 TTCTT-TTCT-TTCCT
1 TTCTTCTTCTCTTCTT
96941128 TTCTTC
1 TTCTTC
96941134 CCGAATGAGC
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
13 2 0.04
14 23 0.51
15 6 0.13
16 14 0.31
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTCTTCTTCTCTTCTT
Found at i:96941090 original size:19 final size:19
Alignment explanation
Indices: 96941066--96941124 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
96941056 TGGTTGCTCC
96941066 TTCTTCTTCTTCTCTTCTT
1 TTCTTCTTCTTCTCTTCTT
96941085 TTCTTCTTC-TCTTCTTTCTT
1 TTCTTCTTCTTC-TC-TTCTT
*
96941105 TTCTCTCTT-TTCTTTTCTT
1 TTCT-TCTTCTTCTCTTCTT
96941124 T
1 T
96941125 CCTTTCTTCC
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
18 2 0.06
19 17 0.49
20 10 0.29
21 6 0.17
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (19 bp):
TTCTTCTTCTTCTCTTCTT
Found at i:96941118 original size:5 final size:5
Alignment explanation
Indices: 96941069--96941129 Score: 54
Period size: 5 Copynumber: 12.2 Consensus size: 5
96941059 TTGCTCCTTC
* * *
96941069 TTCTT CTTCTC TTCTT TTCTT CTTCTC TTC-T TTCTT TTC-T CTCTT TTCTT
1 TTCTT -TTCTT TTCTT TTCTT -TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT
*
96941119 TTCTT TCCTT T
1 TTCTT TTCTT T
96941130 CTTCCCGAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
4 6 0.13
5 31 0.69
6 8 0.18
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (5 bp):
TTCTT
Found at i:96941339 original size:14 final size:14
Alignment explanation
Indices: 96941320--96941347 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96941310 GTCTGCTGCC
96941320 TTTTTTTTAGCTTT
1 TTTTTTTTAGCTTT
96941334 TTTTTTTTAGCTTT
1 TTTTTTTTAGCTTT
96941348 ATACTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.79
Consensus pattern (14 bp):
TTTTTTTTAGCTTT
Found at i:96943301 original size:15 final size:15
Alignment explanation
Indices: 96943283--96943312 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
96943273 AAATTTTAAT
*
96943283 TTTTTATAGTTTATA
1 TTTTTATAATTTATA
96943298 TTTTTATAATTTATA
1 TTTTTATAATTTATA
96943313 AAGGATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:96953175 original size:17 final size:18
Alignment explanation
Indices: 96953149--96953182 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
96953139 ATTTATGCAT
96953149 ACAATATATAAATATAAA
1 ACAATATATAAATATAAA
*
96953167 ACAAT-TATATATATAA
1 ACAATATATAAATATAA
96953183 TTATGAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (18 bp):
ACAATATATAAATATAAA
Found at i:96956423 original size:19 final size:20
Alignment explanation
Indices: 96956395--96956448 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
96956385 TTTAAATGAT
*
96956395 TTTTATTAATTATTTA-AAA
1 TTTTAATAATTATTTACAAA
96956414 TTTTAATAATGT-TTTACAAA
1 TTTTAATAAT-TATTTACAAA
* *
96956434 TTTAAAAAATTATTT
1 TTTTAATAATTATTT
96956449 TTATTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTTAATAATTATTTACAAA
Found at i:96962131 original size:9 final size:9
Alignment explanation
Indices: 96962119--96962158 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
96962109 TTTTTAACAT
96962119 TTTTAAAAA
1 TTTTAAAAA
96962128 TTTTAATAAA
1 TTTTAA-AAA
*
96962138 GTTTTACAAA
1 -TTTTAAAAA
96962148 TTTTAAAAA
1 TTTTAAAAA
96962157 TT
1 TT
96962159 ATTTTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 16 0.59
10 6 0.22
11 5 0.19
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:96962706 original size:11 final size:10
Alignment explanation
Indices: 96962690--96962714 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
96962680 AATAGTAGGG
96962690 AAAAAAAAAC
1 AAAAAAAAAC
96962700 AAAAAAAAAC
1 AAAAAAAAAC
96962710 AAAAA
1 AAAAA
96962715 TGAGAAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:96967324 original size:25 final size:24
Alignment explanation
Indices: 96967296--96967342 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
96967286 CAAAATAAAA
96967296 AATA-AAAAATTAAAATACCAAATTG
1 AATATAAAAATT-AAATA-CAAATTG
*
96967321 AATATTAAAATTAAATACAAAT
1 AATATAAAAATTAAATACAAAT
96967343 ACTAAATACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 5 0.25
25 9 0.45
26 6 0.30
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (24 bp):
AATATAAAAATTAAATACAAATTG
Found at i:96968331 original size:17 final size:17
Alignment explanation
Indices: 96968293--96968332 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
96968283 TTGTTAGATC
96968293 TAATAAATTAAAGTGAA
1 TAATAAATTAAAGTGAA
* * *
96968310 CAATAAATTAATGTGGA
1 TAATAAATTAAAGTGAA
96968327 TAATAA
1 TAATAA
96968333 TATTTATATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (17 bp):
TAATAAATTAAAGTGAA
Found at i:96972768 original size:3 final size:3
Alignment explanation
Indices: 96972760--96972795 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
96972750 TTTCCTTCAT
96972760 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
96972796 ATAATCTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:96987261 original size:33 final size:33
Alignment explanation
Indices: 96987205--96987291 Score: 124
Period size: 33 Copynumber: 2.6 Consensus size: 33
96987195 CCCTCCCAAA
96987205 AAAAACCTAACCCAAAAATAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCC--AAA-AAAAAAAAAGAAAAAAG
*
96987241 AAAAACCTAACCCAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAAGAAAAAAG
96987274 AAAAACCTAA--CAAAAAAA
1 AAAAACCTAACCCAAAAAAA
96987292 CTAAAAAAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
31 8 0.16
33 26 0.52
34 3 0.06
36 13 0.26
ACGTcount: A:0.75, C:0.15, G:0.06, T:0.05
Consensus pattern (33 bp):
AAAAACCTAACCCAAAAAAAAAAAAGAAAAAAG
Found at i:96987288 original size:18 final size:18
Alignment explanation
Indices: 96987234--96987290 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
96987224 AAAAAAAAAG
96987234 AAAAAAGAAAAACCTAAC
1 AAAAAAGAAAAACCTAAC
** * *
96987252 CCAAAA-AAAAA--GAAG
1 AAAAAAGAAAAACCTAAC
96987267 AAAAAAGAAAAACCTAAC
1 AAAAAAGAAAAACCTAAC
96987285 AAAAAA
1 AAAAAA
96987291 ACTAAAAAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
15 6 0.21
16 5 0.18
17 5 0.18
18 12 0.43
ACGTcount: A:0.75, C:0.14, G:0.07, T:0.04
Consensus pattern (18 bp):
AAAAAAGAAAAACCTAAC
Found at i:96987347 original size:12 final size:12
Alignment explanation
Indices: 96987330--96987359 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
96987320 TCCCACTTGC
96987330 CCCATTTTTCCT
1 CCCATTTTTCCT
96987342 CCCATTTTTCCT
1 CCCATTTTTCCT
96987354 CCCATT
1 CCCATT
96987360 GTCTACCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
CCCATTTTTCCT
Found at i:96988043 original size:15 final size:15
Alignment explanation
Indices: 96988020--96988051 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
96988010 ATATTATTGT
96988020 TATAAATTTTTTATG
1 TATAAATTTTTTATG
*
96988035 TATATATTTTTTATG
1 TATAAATTTTTTATG
96988050 TA
1 TA
96988052 CGTTTCCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (15 bp):
TATAAATTTTTTATG
Found at i:96988110 original size:37 final size:37
Alignment explanation
Indices: 96988068--96988169 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
96988058 CTAATATTTT
96988068 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
96988105 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
96988148 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
96988170 CCAAATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:96989866 original size:12 final size:12
Alignment explanation
Indices: 96989846--96989881 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
96989836 ATTCATTTAA
96989846 CATTCATGCATT
1 CATTCATGCATT
*
96989858 CATTTATGCATT
1 CATTCATGCATT
*
96989870 CATTCATTCATT
1 CATTCATGCATT
96989882 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:96996957 original size:70 final size:71
Alignment explanation
Indices: 96996762--96996985 Score: 308
Period size: 72 Copynumber: 3.1 Consensus size: 71
96996752 GAGTTAAGCC
* *
96996762 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
96996827 GAGGTAT
65 GAGGTAT
* * ** ** * *
96996834 TTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGT
1 TTTTAATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGC
96996898 TGAGGTAT
64 TGAGGTAT
96996906 TTTTAA-TTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
96996970 AGGTAT
66 AGGTAT
*
96996976 TTTTAGTTTT
1 TTTTAATTTT
96996986 AAATTGACTC
Statistics
Matches: 129, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
70 53 0.41
71 13 0.10
72 63 0.49
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (71 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTAT
Found at i:96997012 original size:63 final size:66
Alignment explanation
Indices: 96996846--96997020 Score: 194
Period size: 70 Copynumber: 2.6 Consensus size: 66
96996836 TCAATTTTTG
** * *
96996846 TGTTTTAATTTCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTA
1 TGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTA
96996911 A
66 A
* ** *
96996912 TTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT
1 ---TGTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATT
96996977 TTT-A
62 TTTAA
** *
96996981 -GTTTT-AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
96997021 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
63 31 0.33
65 5 0.05
69 7 0.08
70 50 0.54
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.35
Consensus pattern (66 bp):
TGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTA
A
Found at i:96997055 original size:258 final size:257
Alignment explanation
Indices: 96996598--96997211 Score: 1090
Period size: 258 Copynumber: 2.4 Consensus size: 257
96996588 TCAAGGAAAA
96996598 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTG-TT
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATT-TTGTTT
96996662 TCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
65 TCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
96996727 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
130 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
96996792 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
195 TATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
96996856 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTTTT
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTTTT
96996921 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTT
66 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTT
96996986 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCAT
131 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCAT
96997051 ATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
196 ATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
* * * * * *
96997113 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACGATGAGGTAATCTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-TGTTT
* *
96997176 GTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
65 -TCAA-AATCAACTCATATTGCGAGAAGTGAGTTGA
96997212 ACCTTTTAAT
Statistics
Matches: 344, Mismatches: 8, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
255 17 0.05
256 7 0.02
257 77 0.22
258 243 0.71
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (257 bp):
TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTTTT
CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTT
AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCAT
ATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
Found at i:96997140 original size:71 final size:69
Alignment explanation
Indices: 96997020--96997211 Score: 242
Period size: 71 Copynumber: 2.7 Consensus size: 69
96997010 GAGTTAAGCC
* * *
96997020 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCT
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACGAT
96997084 GAGGTA
64 GAGGTA
**
96997090 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGATG
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGATG
96997155 AGGTA
65 AGGTA
* * * * *
96997160 ATCTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTTCAATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
96997212 ACCTTTTAAT
Statistics
Matches: 106, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
69 2 0.02
70 28 0.26
71 72 0.68
72 4 0.04
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGATGA
GGTA
Found at i:96997261 original size:195 final size:187
Alignment explanation
Indices: 96996856--96997302 Score: 523
Period size: 195 Copynumber: 2.4 Consensus size: 187
96996846 TGTTTTAATT
* * * *
96996856 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAA-TTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTT
* *
96996920 TCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
66 TCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGATGAGGTATTTTTAGTTT
** **
96996985 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
131 TAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAAAA
* *
96997042 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTTTGTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGT-T
* ** *
96997106 TTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGG-ACGATGAGGTAATCTCAATT
65 TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGATGAGGT-AT-T---TT
* *
96997169 TCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACTTTTT
125 T-AGTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TACTTTTT
96997233 CAAAA
183 CAAAA
* * * *
96997238 TCAGCTCATATTGCGAG-GGTGAGTTGAGCCTCAGGTCACGC-GAGGTA-TTTCAATTTCTGTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTT
96997300 TCA
66 TCA
96997303 TTATTAGTTT
Statistics
Matches: 222, Mismatches: 24, Indels: 23
0.83 0.09 0.09
Matches are distributed among these distances:
185 27 0.12
186 41 0.18
187 38 0.17
190 3 0.01
191 4 0.02
192 1 0.00
193 3 0.01
194 13 0.06
195 57 0.26
196 35 0.16
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.36
Consensus pattern (187 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTT
TCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGATGAGGTATTTTTAGTTT
TAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAAAA
Found at i:96997476 original size:14 final size:14
Alignment explanation
Indices: 96997457--96997491 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
96997447 CGCCGAGGTA
96997457 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
96997471 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
96997485 CTTTCAA
1 TTTTCAA
96997492 AAAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:96997555 original size:178 final size:165
Alignment explanation
Indices: 96997382--96998095 Score: 731
Period size: 161 Copynumber: 4.5 Consensus size: 165
96997372 TTCAATTTGT
*
96997382 TTTC-ATTT-TGTTTTTGAAAAATCAATCACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTTTTTAAAAAATCAATCACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCA
96997445 CACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATAT
66 CACG-CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATAT
96997510 TGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
128 TGCGAGAGGTGAGTTGAGCCTCAGG-CACGCTGAGGTAA
* * *
96997549 TTTCAATTTCTGTTGTCAAAAAATC-A--ACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTTTTTAAAAAATCAATCACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCA
*
96997611 CACGCGAGGTATTTTCAATTTCCGTTTTTCAATTTCT-CCTTTCAAAAAAATCAACTCATATTGC
66 CACGCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGC
96997675 GAGAGGTGAGTTGAGCCTCAGG-ACGCTGAGGTAA
131 GAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTAA
* * * *
96997709 TTTCAATTTCTGTTGTCAAAAAAGTC-A--ACTCGTATTGCGAGCGGCGAGTTGAGCCTTAGGTC
1 TTTCAATTTCTGTTTTTAAAAAA-TCAATCACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTC
** * *
96997771 ACACGCGAGGTATTTTCAATTT-C--TGCTCAATTTATGTTTTTC-AAAAAATCAACTCATATTG
65 ACACGCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTG
* * * **
96997832 CGAGAGATAAGTTGAGCCTCA--CATGCTGAGGTGT
130 CGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTAA
* * *
96997866 TTTCAATTTCTATTTTTCAAAAAATC-A--ACTCATATTGCGAGA-GTGAGTTGAGCCT--GG-C
1 TTTCAATTTCTGTTTTT-AAAAAATCAATCACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTC
96997924 TACACGCTGAGG-----T--A------TTTTTCAATTTCTGT-TTGTC-AAAAAATCAACTCATA
65 -ACACGC-GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTCTT-TCAAAAAAATCAACTCATA
* * **
96997974 TTGTGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGT
127 TTGCGAGAGGTGAGTTGAGCCTCAGG---CACGCTGAGGTAA
* * * *
96998016 TTTCAACTTCTTTTTTTCAAAAAATC-A--ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
1 TTTCAATTTCTGTTTTT-AAAAAATCAATCACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTC
*
96998076 ACGCGCTGAGGTATTTTCAA
65 ACACGC-GAGGTATTTTCAA
96998096 AAAAAACTCA
Statistics
Matches: 488, Mismatches: 34, Indels: 59
0.84 0.06 0.10
Matches are distributed among these distances:
144 2 0.00
145 49 0.10
148 1 0.00
150 53 0.11
151 23 0.05
153 3 0.01
154 8 0.02
155 4 0.01
156 13 0.03
157 39 0.08
158 54 0.11
159 4 0.01
160 36 0.07
161 58 0.12
162 43 0.09
164 5 0.01
165 33 0.07
166 39 0.08
167 4 0.01
168 5 0.01
169 12 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (165 bp):
TTTCAATTTCTGTTTTTAAAAAATCAATCACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCA
CACGCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTAA
Found at i:96997597 original size:73 final size:74
Alignment explanation
Indices: 96997493--96998095 Score: 439
Period size: 74 Copynumber: 7.9 Consensus size: 74
96997483 GTCTTTCAAA
*
96997493 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATT
96997557 TCTGTTGTC
66 TCTGTTGTC
* * *
96997566 AAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGC-GAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCTGAGGTATTTTCAAT
* *
96997630 TTCCGTTTTTC
65 TTCTG-TTGTC
* * * * * * * * *
96997641 AATTTCTCCTTTCAAAA--AAATCA-ACT-C-ATATTGCGAGAGGTGAG-TTGAGCCTCAGGACG
1 AA-----------AAAATCAACTCATATTGCGAGA--G-GTGAGTTGAGCCTCAG--GCA-CACG
*
96997700 CTGAGGTAATTTCAATTTCTGTTGTC
49 CTGAGGTATTTTCAATTTCTGTTGTC
* * * *
96997726 AAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTTAGGTCACACGC-GAGGTATTTTCAA
1 AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCTGAGGTATTTTCAA
96997790 TTTCTGCTCAATTTATGTTTTTC
64 TTTCTG-------T-TG----TC
* * * *
96997813 AAAAAATCAACTCATATTGCGAGAGATAAGTTGAGCCT----CACATGCTGAGGTGTTTTCAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATT
* *
96997874 TCTATTTTTC
66 TCT-GTTGTC
96997884 AAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCT--GGCTACACGCTGAGGTATTTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGC-ACACGCTGAGGTA-TTTTCAA
96997946 TTTCTGTTTGTC
64 TTTCTG-TTGTC
* * * *
96997958 AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAAC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCTGAGGTATTTTCAAT
* *
96998023 TTCTTTTTTTC
65 TTC-TGTTGTC
*
96998034 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACGCGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAA
96998096 AAAAAACTCA
Statistics
Matches: 421, Mismatches: 56, Indels: 105
0.72 0.10 0.18
Matches are distributed among these distances:
70 11 0.03
71 26 0.06
72 1 0.00
73 50 0.12
74 78 0.19
75 44 0.10
76 59 0.14
77 29 0.07
78 7 0.02
79 1 0.00
80 1 0.00
81 7 0.02
82 19 0.05
83 8 0.02
84 14 0.03
85 10 0.02
86 48 0.11
87 8 0.02
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATT
TCTGTTGTC
Found at i:96997779 original size:161 final size:160
Alignment explanation
Indices: 96997405--96998095 Score: 770
Period size: 158 Copynumber: 4.4 Consensus size: 160
96997395 TTGAAAAATC
96997405 AATC-ACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAG-GGCGAGTTGAGCCTCAGGTCACACG-CGAGGTATTTTCAATTTCC
96997469 GTTTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
64 GTTTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
96997534 GACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAA
127 G--ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAA
96997570 AATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCAATTTCCG
1 AATCAACTCGTATTGCGAG-GGCGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCAATTTCCG
*
96997635 TTTTTCAATTTCT-CCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
65 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
96997699 GCTGAGGTAATTTCAATTTCTGTTGTCAAAA
130 GCTGAGGTAATTTCAATTTCTGTTGTCAAAA
*
96997730 AAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTTAGGTCACACGCGAGGTATTTTCAATTT-C
1 AA-TCAACTCGTATTGCGAG-GGCGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCAATTTCC
** * * * * *
96997794 --TGCTCAATTTATGTTTTTC-AAAAAATCAACTCATATTGCGAGAGATAAGTTGAGCCTCA-CA
64 GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* ** * *
96997855 TGCTGAGGTGTTTTCAATTTCTATTTTTCAAAA
129 CGCTGAGGTAATTTCAATTTCT-GTTGTCAAAA
* * *
96997888 AATCAACTCATATTGCGAGAGTGAGTTGAGCCT--GG-CTACACGCTGAGG-----T--A-----
1 AATCAACTCGTATTGCGAGGGCGAGTTGAGCCTCAGGTC-ACACGC-GAGGTATTTTCAATTTCC
* *
96997938 -TTTTTCAATTTCTGT-TTGTC-AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGG
64 GTTTTTCAATTTCTGTCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
** * * *
96998000 TCACACGCTGAGGTGTTTTCAACTTCTTTTTTTCAAAA
128 ----ACGCTGAGGTAATTTCAATTTC-TGTTGTCAAAA
* * *
96998038 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACGCGCTGAGGTATTTTCAA
1 AATCAACTCGTATTGCGAG-GGCGAGTTGAGCCTCAGGTCACACGC-GAGGTATTTTCAA
96998096 AAAAAACTCA
Statistics
Matches: 470, Mismatches: 32, Indels: 55
0.84 0.06 0.10
Matches are distributed among these distances:
144 2 0.00
145 49 0.10
148 1 0.00
150 50 0.11
151 24 0.05
153 3 0.01
154 8 0.02
155 4 0.01
156 13 0.03
157 36 0.08
158 58 0.12
159 4 0.01
160 36 0.08
161 58 0.12
162 43 0.09
164 5 0.01
165 37 0.08
166 39 0.08
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (160 bp):
AATCAACTCGTATTGCGAGGGCGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCAATTTCCGT
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACG
CTGAGGTAATTTCAATTTCTGTTGTCAAAA
Found at i:96997974 original size:74 final size:75
Alignment explanation
Indices: 96997635--96998092 Score: 453
Period size: 76 Copynumber: 6.1 Consensus size: 75
96997625 TCAATTTCCG
**
96997635 TTTTTCAATTTCTCCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
1 TTTTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCA
96997697 -ACGCTGAGGTA
64 CACGCTGAGGTA
* * * *
96997708 -ATTTCAATTTCTG-TTGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTTAGGTC
1 TTTTTCAATTTCTGTTTGTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCC-TAGG-C
96997771 ACACGC-GAGGTA
63 ACACGCTGAGGTA
* *
96997783 -TTTTCAATTTCTGCTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGATAAGTTGA
1 TTTTTCAATTTCTG------TT-TG----TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
96997847 GCCT---CACATGCTGAGGT-
55 GCCTAGGCACACGCTGAGGTA
* * *
96997864 GTTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCT-GGCTAC
1 TTTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGC-AC
96997927 ACGCTGAGGTA
65 ACGCTGAGGTA
* *
96997938 TTTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGG-CA
96998003 CACGCTGAGGT-
64 CACGCTGAGGTA
* * * *
96998014 GTTTTCAACTTCTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCAC
*
96998078 GCGCTGAGGTA
65 ACGCTGAGGTA
96998089 TTTT
1 TTTT
96998093 CAAAAAAAAC
Statistics
Matches: 326, Mismatches: 29, Indels: 58
0.79 0.07 0.14
Matches are distributed among these distances:
70 11 0.03
71 34 0.10
72 45 0.14
73 12 0.04
74 51 0.16
75 35 0.11
76 62 0.19
77 14 0.04
78 1 0.00
81 6 0.02
82 18 0.06
83 2 0.01
85 1 0.00
86 26 0.08
87 8 0.02
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (75 bp):
TTTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCACA
CGCTGAGGTA
Found at i:96998050 original size:150 final size:149
Alignment explanation
Indices: 96997635--96998092 Score: 485
Period size: 150 Copynumber: 3.0 Consensus size: 149
96997625 TCAATTTCCG
**
96997635 TTTTTCAATTTCTCCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
1 TTTTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTC
** * * * * *
96997697 --ACGCTGAGGTAATTTCAATTTC-TGTTGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTT
64 ACACGCTGAGGTGTTTTCAATTTCTTTTTTTCAAAAAA-TCAACTCATATTGCGAG-AGTGAGTT
96997759 GAGCCTTAGGTCACACGC-GAGGTA
127 GAGCC-TAGGT-ACACGCTGAGGTA
* *
96997783 -TTTTCAATTTCTGCTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGATAAGTTGA
1 TTTTTCAATTTCTG------TT-TG----TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
96997847 G-C-C--TCACATGCTGAGGTGTTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGA
55 GCCTCGGTCACACGCTGAGGTGTTTTCAATTTCTTTTTTTCAAAAAATCAACTCATATTGCGAGA
96997908 GTGAGTTGAGCCT-GGCTACACGCTGAGGTA
120 GTGAGTTGAGCCTAGG-TACACGCTGAGGTA
*
96997938 TTTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCA
*
96998003 CACGCTGAGGTGTTTTCAACTTCTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
65 CACGCTGAGGTGTTTTCAATTTCTTTTTTTCAAAAAATCAACTCATATTGCGAGA-GTGAGTTGA
*
96998068 GCCTCAGG-ACGCGCTGAGGTA
129 GCCT-AGGTACACGCTGAGGTA
96998089 TTTT
1 TTTT
96998093 CAAAAAAAAC
Statistics
Matches: 262, Mismatches: 20, Indels: 53
0.78 0.06 0.16
Matches are distributed among these distances:
145 34 0.13
146 1 0.00
147 13 0.05
149 2 0.01
150 57 0.22
151 29 0.11
153 3 0.01
154 9 0.03
155 8 0.03
156 25 0.10
157 36 0.14
158 43 0.16
159 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (149 bp):
TTTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCAC
ACGCTGAGGTGTTTTCAATTTCTTTTTTTCAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGC
CTAGGTACACGCTGAGGTA
Found at i:96998236 original size:69 final size:67
Alignment explanation
Indices: 96998100--96998344 Score: 307
Period size: 62 Copynumber: 3.8 Consensus size: 67
96998090 TTTCAAAAAA
96998100 AACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA--CGCTGAGGTA--TTCAATTTTTGTATGT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGCTGAGGTATTTTCAATTTTTGTATGT
96998160 TC
66 TC
96998162 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGCTGAGGTATTGTTCAATTTTTTGTAT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGCTGAGGTATT-TTCAA-TTTTTGTAT
96998227 GTTC
64 GTTC
* * * ***
96998231 AACTCATATTGCGAGAGGTGAG-TAAGCCTCAGGACGCGCTGAGGTATTTTCAA------AAAAA
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGCTGAGGTATTTTCAATTTTTGTATGT
96998289 TC
66 TC
*
96998291 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCCTGAGGTAATTTTC
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCG-CTGAGGT-ATTTTC
96998345 TGTTTTCAAT
Statistics
Matches: 164, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
60 25 0.15
61 13 0.08
62 38 0.23
63 9 0.05
65 10 0.06
67 5 0.03
68 29 0.18
69 35 0.21
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (67 bp):
AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGCTGAGGTATTTTCAATTTTTGTATGT
TC
Found at i:96998309 original size:60 final size:63
Alignment explanation
Indices: 96998029--96998344 Score: 241
Period size: 60 Copynumber: 5.1 Consensus size: 63
96998019 CAACTTCTTT
* *
96998029 TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCG-CTGAGGT-A
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCCTGAGGTAA
*
96998089 TTTTC-AAAAAA--AACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG--ACG-CTGAGGTATTC
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCCTGAGG---T-
96998147 AA
62 AA
*** *** * * *
96998149 TTTT-TGTATGTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCG-CTGAGGT-A
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCCTGAGGTAA
* *** *
96998209 TTGTTCAATTTTTTGTATGTTCAACTCATATTGCGAGAGGTGAG-TAAGCCTCAGGACGCG-CTG
1 TT-TTCAA-------AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCCTG
96998272 AGGT-A
58 AGGTAA
* *
96998277 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCCTGAGGTAA
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCCTGAGGTAA
96998340 TTTTC
1 TTTTC
96998345 TGTTTTCAAT
Statistics
Matches: 215, Mismatches: 18, Indels: 43
0.78 0.07 0.16
Matches are distributed among these distances:
55 8 0.04
57 2 0.01
58 32 0.15
60 45 0.21
61 15 0.07
62 39 0.18
63 8 0.04
65 8 0.04
67 5 0.02
68 24 0.11
69 29 0.13
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (63 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCCTGAGGTAA
Found at i:96998317 original size:129 final size:131
Alignment explanation
Indices: 96998160--96998474 Score: 365
Period size: 134 Copynumber: 2.4 Consensus size: 131
96998150 TTTTGTATGT
*
96998160 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCG-CTGAGGT-A-T-TG-TTCAATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCCTGAGGTAATTCTGTTTCAA-TT
* ** ** *
96998220 TTTGTATGTTCAACTCATATTGCGAGAGGTGAGTAAGCCTCAGGACGCGCTGAGGTATTTTC-AA
65 TTT-CA-AATCAACTCATATTGCGAGAAATGAGTAAGCCTCAAGACGCGCTGAGGTA-TTTCAAA
96998284 AAAAA
127 AAAAA
96998289 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCCTGAGGTAATTTTCTGTTTTCAA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCCTGAGGTAA--TTCTG-TTTCAA
* * * *
96998354 TTTTTCAAATCAACTCATATTGCGAGAAATGATTGAGCCTCAAGACTCGTTGAGGTATTTCAAAA
63 TTTTTCAAATCAACTCATATTGCGAGAAATGAGTAAGCCTCAAGACGCGCTGAGGTATTTC-AAA
96998419 AAAAA
127 AAAAA
* * *
96998424 TCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC-GAGGTA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACGCCTGAGGTA
96998475 TTTTTAATTT
Statistics
Matches: 160, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
129 40 0.25
130 7 0.04
131 1 0.01
133 4 0.03
134 42 0.26
135 41 0.26
136 13 0.08
137 12 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (131 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCCTGAGGTAATTCTGTTTCAATTT
TTCAAATCAACTCATATTGCGAGAAATGAGTAAGCCTCAAGACGCGCTGAGGTATTTCAAAAAAA
A
Found at i:96998618 original size:74 final size:76
Alignment explanation
Indices: 96998509--96998652 Score: 211
Period size: 74 Copynumber: 1.9 Consensus size: 76
96998499 TTGCCTTAAA
* * *
96998509 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTG-AGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACACCGCAGGTAATTTCAA
96998572 TTTCTGTTGTC
66 TTTCTGTTGTC
* * *
96998583 AAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCTCAGGTCACACACCGCAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACACCGCAGGTAATTTCA
96998648 ATTTC
65 ATTTC
96998653 CGTTTTTTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
74 40 0.66
76 6 0.10
77 15 0.25
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACACCGCAGGTAATTTCAA
TTTCTGTTGTC
Found at i:96998716 original size:169 final size:165
Alignment explanation
Indices: 96998417--96998823 Score: 535
Period size: 169 Copynumber: 2.5 Consensus size: 165
96998407 GGTATTTCAA
* *
96998417 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTTAA
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAA
*
96998482 TTTCCGTTTTCAATTTCTTGCCTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 TTTCCGTTTTCAATTTCTTGCCTTAAAAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
96998547 TCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC
131 TCAGGAC-CGCTGAGGTAATTTCAATTTCTGTTGTC
*
96998583 AAAAAAATCAACTCGTATTGCGAGAGGCGATTTGAGCCTCAGGTCACACACCGCAGGTATTTTCA
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACACCG-AGGTATTTTCA
**
96998648 ATTTCCGTTTTTTCAATTT-TCTGCCTTAAAAAAAAAATTGACTCATATTGCGAAAGGTGAGTTG
65 ATTTCCG--TTTTCAATTTCT-TGCCTTAAAAAAAAAATCAACTCATATTGCGAAAGGTGAGTTG
* * * *
96998712 AGCCTCGGGGCCGCTGAGGTATTTTCAATTTTTG-TGT-
127 AGCCTCAGGACCGCTGAGGTAATTTCAATTTCTGTTGTC
*** * * * * *
96998749 -TTTAATTCAACTCAT-TTGCGAGAGGTGAGTTGAGCCTCAGG---CACGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAA
*
96998809 TTTCTG-TTTCAATTT
66 TTTCCGTTTTCAATTT
96998824 AACGTTGTCA
Statistics
Matches: 217, Mismatches: 20, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
157 9 0.04
160 17 0.08
161 5 0.02
164 24 0.11
165 10 0.05
166 51 0.24
167 20 0.09
168 22 0.10
169 59 0.27
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (165 bp):
AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAA
TTTCCGTTTTCAATTTCTTGCCTTAAAAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
TCAGGACCGCTGAGGTAATTTCAATTTCTGTTGTC
Found at i:96999089 original size:75 final size:76
Alignment explanation
Indices: 96998887--96999778 Score: 461
Period size: 88 Copynumber: 10.9 Consensus size: 76
96998877 TCTACTTTTC
*
96998887 AAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--CACACGCTGAGGTATTTTCAATT
*
96998950 TCTGTCTTTCAAAAA
64 TCTGTTTTTC--AAA
* ** * *
96998965 AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG-ACATGCTGAGGTATTTTCAATTT
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATTT
96999029 CTGTTTTTCAAA
65 CTGTTTTTCAAA
*
96999041 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATTTC
*
96999105 TG-TTGTCAAA
66 TGTTTTTCAAA
* * * *
96999115 AAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCA-ACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCTGAGGTATTTTCAATTT
96999179 CTGTTTTTCAATTTCTGCCTTTCA
65 CTGTTTTTCAA------------A
** * * * * * * * *
96999203 AAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTAT
1 AAAATCAACTCATATTGCGAGA--G-GTGAGTTGAG-----CCTCAGG--CACACGCTGAGGTAT
*
96999264 TTTCAATTTCTGTCTTTCAAA
56 TTTCAATTTCTGTTTTTCAAA
* * *
96999285 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GCACACGCTGAGGTA--TTTTCAAT
* *
96999350 TTATATTTTTCAAA
63 TTCTGTTTTTCAAA
* * * * **
96999364 AAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCT-GAGGTATTTTCAATT
96999428 TCTGTTTTTCAGATTCTGTTTTCA
64 TCTGTTTTTCA-A----------A
* * * *
96999452 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACAC--GCTGAGGTATTTTCAATT
*
96999516 TCTTTTTTTTTTTCAAA
64 TC----TGTTTTTCAAA
* * * * * *
96999533 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCTGCGAGA-GTTGAGTTGAG
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC---CTCA----GGC-ACACGCTGAGGT-A-
*
96999597 TCTTTTAATTTCTGTTTTTC--A
55 T-TTTCAATTTCTGTTTTTCAAA
* * **
96999618 AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAGTCACA-TATCGAGGTATTTTCAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGGCACACGCT-GAGGTATTTTC--AA
*
96999682 TCTGCTTTTCAAGTTAAGTTTC-AA
62 ------TTTC-TGTT---TTTCAAA
* * *
96999706 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACAC--GCTGAGGTATTTTCAATT
96999770 TCTGTTTTT
64 TCTGTTTTT
96999779 AATGTCTGTT
Statistics
Matches: 631, Mismatches: 97, Indels: 174
0.70 0.11 0.19
Matches are distributed among these distances:
74 44 0.07
75 81 0.13
76 18 0.03
77 35 0.06
78 43 0.07
79 69 0.11
80 31 0.05
81 6 0.01
82 49 0.08
83 7 0.01
84 33 0.05
85 10 0.02
86 9 0.01
87 17 0.03
88 118 0.19
89 3 0.00
90 3 0.00
91 11 0.02
92 10 0.02
93 6 0.01
94 28 0.04
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAAA
Found at i:96999153 original size:74 final size:74
Alignment explanation
Indices: 96998887--96999567 Score: 388
Period size: 75 Copynumber: 8.5 Consensus size: 74
96998877 TCTACTTTTC
*
96998887 AAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
96998950 TCTGTCTTTCAAAAA
63 TCTGT-TTTC--AAA
* ** * *
96998965 AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
96999030 TGTTTTTCAAA
65 TG-TTTTCAAA
*
96999041 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
96999106 GTTGTCAAA
66 GTTTTCAAA
* * * * *
96999115 AAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCAACGCCGAGGTATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC-ACGCTGAGGTATTTTCAATTTC
96999180 TGTTTTTCAATTTCTGCCTTTCA
65 TG-TTTTCAA------------A
** * * * * * * * *
96999203 AAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTAT
1 AAAATCAACTCATATTGCGAGA--G-GTGAGTTGAG-----CCTCAGG---ACACGCTGAGGTAT
96999264 TTTCAATTTCTGTCTTTCAAA
55 TTTCAATTTCTGT-TTTCAAA
* * *
96999285 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--TTTTCAAT
* *
96999350 TTATATTTTTCAAA
62 TTCT-GTTTTCAAA
* * * * **
96999364 AAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTCAATT
96999428 TCTGTTTTTCAGATTCTGTTTTCA
63 TCTG-TTTTCA-A----------A
* * * *
96999452 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTGAGGTATTTTCAATT
*
96999516 TCTTTTTTTTTTTCAAA
63 TC-----TGTTTTCAAA
96999533 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
96999568 TTTTTAATTT
Statistics
Matches: 472, Mismatches: 68, Indels: 122
0.71 0.10 0.18
Matches are distributed among these distances:
74 45 0.10
75 78 0.17
76 13 0.03
77 27 0.06
78 37 0.08
79 65 0.14
80 28 0.06
81 6 0.01
82 47 0.10
83 3 0.01
84 1 0.00
85 4 0.01
86 3 0.01
87 5 0.01
88 67 0.14
89 1 0.00
91 1 0.00
92 8 0.02
93 5 0.01
94 27 0.06
95 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTCAAA
Found at i:96999188 original size:14 final size:14
Alignment explanation
Indices: 96999169--96999195 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
96999159 CGCCGAGGTA
96999169 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
96999183 TTTTCAATTTCTG
1 TTTTCAATTTCTG
96999196 CCTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:96999201 original size:14 final size:14
Alignment explanation
Indices: 96999170--96999203 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
96999160 GCCGAGGTAT
**
96999170 TTTCAATTTCTGTT
1 TTTCAATTTCTGCC
96999184 TTTCAATTTCTGCC
1 TTTCAATTTCTGCC
96999198 TTTCAA
1 TTTCAA
96999204 AAAAAAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCAATTTCTGCC
Found at i:96999408 original size:79 final size:77
Alignment explanation
Indices: 96999205--96999567 Score: 287
Period size: 79 Copynumber: 4.5 Consensus size: 77
96999195 GCCTTTCAAA
* * * *
96999205 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA
* *
96999270 TTTCTGTCTTTC
66 TTTATATCTTTC
* * *
96999282 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTA--TTTTC
*
96999347 AATTTATATTTTTC
64 AATTTATATCTTTC
* * * ** *
96999361 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACA-TGTCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACT-GAGCTATTTTC-
* *
96999425 AAATCTGTTTTTCAGATTCTGTTT
64 -AA------TTT-ATA-TCT-TTC
** * * * ***
96999449 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA
* * *
96999514 TTTCTTTTTTTTTTTC
66 ----TTTATATCTTTC
96999530 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
96999568 TTTTTAATTT
Statistics
Matches: 230, Mismatches: 40, Indels: 27
0.77 0.13 0.09
Matches are distributed among these distances:
77 56 0.24
78 1 0.00
79 67 0.29
81 7 0.03
82 31 0.13
84 5 0.02
85 3 0.01
86 4 0.02
87 2 0.01
88 53 0.23
89 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA
TTTATATCTTTC
Found at i:96999457 original size:244 final size:241
Alignment explanation
Indices: 96999009--96999778 Score: 912
Period size: 254 Copynumber: 3.1 Consensus size: 241
96998999 CCTCAAGACA
*
96999009 TGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * * * * * *
96999074 CCTCAG--GACACGCTGAGGTA-ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAG
66 CTTCAGATCACACACTGAGGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAG
* * * ** *
96999136 AGGCGAGTTGAGCCTCAGGTCA-ACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTT
131 AGGTGAGTTGAGCCTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTG--TT
96999200 TCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
193 TC----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* *
96999253 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
96999318 CTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCG
66 CTTCAGATCACACACTGAGGTA-TTTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCG
*
96999383 AGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGT
129 AGAGGTGAGTTGAGCCTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTCTG-
*
96999447 TTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACG
191 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
*
96999497 TGCTGAGCTATTTTCAATTTCTTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAG
1 TGCTGAGCTATTTTCAATTTC----TGTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAG
* * * * *
96999562 TTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC--AAAAAT
61 TTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-T-TTTTCAATTTCT-TTTTTCAAAAAAAT
* * * *
96999623 CAACTCATATTGCGAGAGGTGAGTTGAACCTTCAGTCACATATCGAGGTATTTTCAAAATCTGCT
115 CAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGGTCACATGTCGAGGTATTTTCAAAATCTGTT
**
96999688 TTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
179 TTTCAAGTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
96999751 TGCTGAGCTATTTTCAATTTCTGTTTTT
1 TGCTGAGCTATTTTCAATTTCTGTTTTT
96999779 AATGTCTGTT
Statistics
Matches: 458, Mismatches: 44, Indels: 42
0.84 0.08 0.08
Matches are distributed among these distances:
244 132 0.29
246 12 0.03
248 23 0.05
249 79 0.17
250 38 0.08
251 3 0.01
252 2 0.00
253 5 0.01
254 137 0.30
255 9 0.02
256 14 0.03
257 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (241 bp):
TGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CTTCAGATCACACACTGAGGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTCA
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
Found at i:96999585 original size:30 final size:30
Alignment explanation
Indices: 96999549--96999610 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
96999539 CAACTCATAT
96999549 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
96999579 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
96999609 TG
1 TG
96999611 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:97000479 original size:38 final size:40
Alignment explanation
Indices: 97000435--97000509 Score: 127
Period size: 38 Copynumber: 1.9 Consensus size: 40
97000425 GCCCTCCCAA
*
97000435 AAAAACCTAACCCAAAAAAAAA-AA-AAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAGAAGAAAAAAGAAAAAAG
97000473 AAAAACCTAACCCAAAAAAAAAGAAGAAAAAAGAAAA
1 AAAAACCTAACCCAAAAAAAAAGAAGAAAAAAGAAAA
97000510 CCTAACAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 22 0.65
39 2 0.06
40 10 0.29
ACGTcount: A:0.76, C:0.13, G:0.08, T:0.03
Consensus pattern (40 bp):
AAAAACCTAACCCAAAAAAAAAGAAGAAAAAAGAAAAAAG
Found at i:97000490 original size:33 final size:30
Alignment explanation
Indices: 97000453--97000523 Score: 115
Period size: 33 Copynumber: 2.3 Consensus size: 30
97000443 AACCCAAAAA
97000453 AAAAAAAAAGAAGAAAAAAGAAAAACCTAACCC
1 AAAAAAAAAGAAGAAAAAAG-AAAACCTAA--C
97000486 AAAAAAAAAGAAGAAAAAAGAAAACCTAAC
1 AAAAAAAAAGAAGAAAAAAGAAAACCTAAC
97000516 AAAAAAAA
1 AAAAAAAA
97000524 CTAAAAAAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
30 9 0.24
32 9 0.24
33 20 0.53
ACGTcount: A:0.77, C:0.11, G:0.08, T:0.03
Consensus pattern (30 bp):
AAAAAAAAAGAAGAAAAAAGAAAACCTAAC
Found at i:97000531 original size:38 final size:36
Alignment explanation
Indices: 97000435--97000523 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 36
97000425 GCCCTCCCAA
97000435 AAAAACCTAACCCAAAAAAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAA--CAAAAAAAAAAAAAAGAAGAAAAAAG
**
97000473 AAAAACCTAAC---CCAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACAAAAAAAAAAAAAAGAAGAAAAAAG
97000506 -AAAACCTAACAAAAAAAA
1 AAAAACCTAACAAAAAAAA
97000524 CTAAAAAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
32 10 0.23
33 20 0.45
35 3 0.07
36 1 0.02
38 10 0.23
ACGTcount: A:0.75, C:0.15, G:0.07, T:0.03
Consensus pattern (36 bp):
AAAAACCTAACAAAAAAAAAAAAAAGAAGAAAAAAG
Found at i:97000579 original size:12 final size:12
Alignment explanation
Indices: 97000562--97000591 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
97000552 TCCCACTTGC
97000562 CCCATTTTTCCT
1 CCCATTTTTCCT
97000574 CCCATTTTTCCT
1 CCCATTTTTCCT
97000586 CCCATT
1 CCCATT
97000592 GTCTACCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
CCCATTTTTCCT
Found at i:97001350 original size:37 final size:37
Alignment explanation
Indices: 97001308--97001409 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
97001298 CTAATATTTT
97001308 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
97001345 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
97001388 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
97001410 CCAAATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:97005558 original size:15 final size:16
Alignment explanation
Indices: 97005533--97005563 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
97005523 AATAAATATA
97005533 TAATATTTCTCTATTT
1 TAATATTTCTCTATTT
97005549 TAAT-TTTCTCTATTT
1 TAATATTTCTCTATTT
97005564 ATATTTATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.65
Consensus pattern (16 bp):
TAATATTTCTCTATTT
Found at i:97008608 original size:104 final size:108
Alignment explanation
Indices: 97008489--97008703 Score: 303
Period size: 111 Copynumber: 2.0 Consensus size: 108
97008479 AAAGATAAAT
* * *
97008489 TATTAATTGAAAGACTT-GATTAG-ACA-A-ATTAACTATATATTAAACTCGAATACACATTTAA
1 TATTAATTGAAAGACTTAAATTAGTACATAGATTAACTATATATTAAACTCAAATACACATTCAA
* *
97008550 CGTTAGAATTTAATAAATCACAATTATAACAAGATAAAATATA
66 CGTTAAAATTCAATAAATCACAATTATAACAAGATAAAATATA
* *
97008593 TATTAATTGAAAGACTTACAAATTAGTTATATAGATTAATTATATATTAAACTCAAATACACATT
1 TATTAATTGAAAGACTT--AAATTAG-TACATAGATTAACTATATATTAAACTCAAATACACATT
*
97008658 CAACTTTAAAATTCAATAAATCACAATTATAACAAGATAAAATATA
63 CAACGTTAAAATTCAATAAATCACAATTATAACAAGATAAAATATA
97008704 AAAACATTGA
Statistics
Matches: 96, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
104 17 0.18
107 5 0.05
109 2 0.02
110 1 0.01
111 71 0.74
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.33
Consensus pattern (108 bp):
TATTAATTGAAAGACTTAAATTAGTACATAGATTAACTATATATTAAACTCAAATACACATTCAA
CGTTAAAATTCAATAAATCACAATTATAACAAGATAAAATATA
Found at i:97009079 original size:29 final size:29
Alignment explanation
Indices: 97009033--97009091 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
97009023 TCCATCGCAG
97009033 TCTCTATTTTAATATTTTCTATCTATATT
1 TCTCTATTTTAATATTTTCTATCTATATT
*
97009062 TCTCTATTTTAATTTTTTCTATCTATATT
1 TCTCTATTTTAATATTTTCTATCTATATT
97009091 T
1 T
97009092 ATACGTGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.64
Consensus pattern (29 bp):
TCTCTATTTTAATATTTTCTATCTATATT
Found at i:97009920 original size:33 final size:33
Alignment explanation
Indices: 97009875--97009958 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 33
97009865 GTTTAGTTAA
* *
97009875 ATTGATTTTCTTT-CAATTAGATAGATTCAATTT
1 ATTGTTTTTCTTTAAAATTAGA-AGATTCAATTT
** *
97009908 ATTGTTTTTCTTTAAAAATTTTAAGATTTAATTT
1 ATTGTTTTTCTTT-AAAATTAGAAGATTCAATTT
97009942 ATTGTTTTTCTTTAAAA
1 ATTGTTTTTCTTTAAAA
97009959 ATTTTAAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
33 16 0.36
34 23 0.52
35 5 0.11
ACGTcount: A:0.31, C:0.06, G:0.07, T:0.56
Consensus pattern (33 bp):
ATTGTTTTTCTTTAAAATTAGAAGATTCAATTT
Found at i:97009941 original size:34 final size:34
Alignment explanation
Indices: 97009897--97009965 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
97009887 TCAATTAGAT
97009897 AGATTCAATTTATTGTTTTTCTTTAAAAATTTTA
1 AGATTCAATTTATTGTTTTTCTTTAAAAATTTTA
*
97009931 AGATTTAATTTATTGTTTTTCTTTAAAAATTTTA
1 AGATTCAATTTATTGTTTTTCTTTAAAAATTTTA
97009965 A
1 A
97009966 AAATATTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (34 bp):
AGATTCAATTTATTGTTTTTCTTTAAAAATTTTA
Found at i:97010021 original size:20 final size:21
Alignment explanation
Indices: 97009980--97010022 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
97009970 ATTATTTTCT
97009980 AATATATTTTCATTAATGTAA
1 AATATATTTTCATTAATGTAA
*
97010001 AATAT-TTTTTATTATAT-TAA
1 AATATATTTTCATTA-ATGTAA
97010021 AA
1 AA
97010023 CAATATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
AATATATTTTCATTAATGTAA
Found at i:97017218 original size:17 final size:18
Alignment explanation
Indices: 97017182--97017219 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
97017172 TTCAATATAA
*
97017182 TTTTTAAAAATCTAATTT
1 TTTTTAAAAATCTAACTT
*
97017200 TTTTTCAAAAT-TAACTT
1 TTTTTAAAAATCTAACTT
97017217 TTT
1 TTT
97017220 GAAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTTAAAAATCTAACTT
Found at i:97017374 original size:16 final size:16
Alignment explanation
Indices: 97017355--97017385 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97017345 TTGAAAGAGT
97017355 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
97017371 TTTCAAATTTATATG
1 TTTCAAATATATATG
97017386 CATTAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:97020377 original size:18 final size:18
Alignment explanation
Indices: 97020354--97020388 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97020344 TTAAAAAATA
*
97020354 AATTTTGAGTTAATTCGG
1 AATTTTGAGTCAATTCGG
*
97020372 AATTTTTAGTCAATTCG
1 AATTTTGAGTCAATTCG
97020389 AATAAGTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.46
Consensus pattern (18 bp):
AATTTTGAGTCAATTCGG
Found at i:97020931 original size:16 final size:17
Alignment explanation
Indices: 97020888--97020931 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
97020878 TTCAATATAA
97020888 TTTTTAAAAATCTAACT
1 TTTTTAAAAATCTAACT
*
97020905 TTTTTCCAAAAT-TAACT
1 TTTTT-AAAAATCTAACT
*
97020922 TTTTGAAAAA
1 TTTTTAAAAA
97020932 ATAAAAATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 4 0.17
17 14 0.61
18 5 0.22
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.45
Consensus pattern (17 bp):
TTTTTAAAAATCTAACT
Found at i:97021082 original size:17 final size:17
Alignment explanation
Indices: 97021060--97021093 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97021050 TTTGAAAGAG
97021060 TTTTCAAATATATATGC
1 TTTTCAAATATATATGC
*
97021077 TTTTCAAATTTATATGC
1 TTTTCAAATATATATGC
97021094 ACTAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (17 bp):
TTTTCAAATATATATGC
Found at i:97021500 original size:63 final size:63
Alignment explanation
Indices: 97021401--97021526 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
97021391 GAGGATAACA
97021401 AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
1 AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
97021464 AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
1 AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
97021527 TTTGCGCTCC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (63 bp):
AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
Found at i:97023948 original size:3 final size:3
Alignment explanation
Indices: 97023940--97024036 Score: 56
Period size: 3 Copynumber: 31.7 Consensus size: 3
97023930 ATTTGCCATT
**
97023940 TTA TTA TTA AAA TTGA TTA GTTA -TA TTTA TTTA TTAA TT- TTA TTA
1 TTA TTA TTA TTA TT-A TTA -TTA TTA T-TA T-TA TT-A TTA TTA TTA
* * * * * *
97023985 TTA TTG CTA TTA TTA TTA TTA TCA TTA TTT TTA TT- TTG TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
97024032 TTA TT
1 TTA TT
97024037 TCTCTTGTCG
Statistics
Matches: 72, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
2 6 0.08
3 50 0.69
4 16 0.22
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:97024155 original size:23 final size:25
Alignment explanation
Indices: 97024126--97024203 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 25
97024116 CGTCATTTTT
97024126 TTATTA-TCGTTATTAA-TA-TACTA
1 TTATTATTC-TTATTAAGTATTACTA
97024149 TTATTATTCTTATTAATGTATTACTA
1 TTATTATTCTTATTAA-GTATTACTA
* *
97024175 TTATT-TT-TTACTTTATTATTA-TA
1 TTATTATTCTTA-TTAAGTATTACTA
97024198 TTATTA
1 TTATTA
97024204 CTATTGCTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
23 20 0.43
24 10 0.21
25 7 0.15
26 10 0.21
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (25 bp):
TTATTATTCTTATTAAGTATTACTA
Found at i:97024173 original size:26 final size:25
Alignment explanation
Indices: 97024144--97024203 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
97024134 GTTATTAATA
97024144 TACTATTATTATTCTTA-TTAATGTAT
1 TACTATTATTATT-TTACTTAAT-TAT
*
97024170 TACTATTATT-TTTTACTTTATTAT
1 TACTATTATTATTTTACTTAATTAT
97024194 TA-TATTATTA
1 TACTATTATTA
97024204 CTATTGCTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
23 7 0.23
24 8 0.26
25 6 0.19
26 10 0.32
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.62
Consensus pattern (25 bp):
TACTATTATTATTTTACTTAATTAT
Found at i:97024345 original size:3 final size:3
Alignment explanation
Indices: 97024287--97024332 Score: 65
Period size: 3 Copynumber: 14.7 Consensus size: 3
97024277 ATATATTTAC
*
97024287 ATT ATT ATT GCATT ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT --ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
97024333 ATACTCTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 36 0.92
5 3 0.08
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:97026668 original size:12 final size:12
Alignment explanation
Indices: 97026651--97026686 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
97026641 ATTCATTTGA
*
97026651 CATTCATATATT
1 CATTCATACATT
*
97026663 CATTCATGCATT
1 CATTCATACATT
97026675 CATTCATACATT
1 CATTCATACATT
97026687 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (12 bp):
CATTCATACATT
Found at i:97031757 original size:75 final size:75
Alignment explanation
Indices: 97031672--97031959 Score: 483
Period size: 75 Copynumber: 3.9 Consensus size: 75
97031662 TTCGTTTCGT
* *
97031672 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAAGTATTTTCAATTTCTG
1 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG
97031737 TCTTTCAAAA
66 TCTTTCAAAA
* *
97031747 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCGATTTCTG
1 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG
97031812 TCTTTCAAAA
66 TCTTTCAAAA
97031822 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG
1 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG
97031887 T-TTTC--AA
66 TCTTTCAAAA
* * * *
97031894 AATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTCTG
1 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG
97031959 T
66 T
97031960 TTGTCAAGAA
Statistics
Matches: 205, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
72 64 0.31
74 4 0.02
75 137 0.67
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (75 bp):
AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG
TCTTTCAAAA
Found at i:97032132 original size:77 final size:73
Alignment explanation
Indices: 97032001--97032228 Score: 280
Period size: 73 Copynumber: 3.1 Consensus size: 73
97031991 GGGTTGAACC
* **
97032001 TTTT-AATTTCTGTTTTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCTTTGGCTCA
1 TTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCAGG---A
97032065 CACGCTGAGCTA
62 CACGCTGAGCTA
*
97032077 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAGGACA
*
97032142 CGCTGAGGTA
64 CGCTGAGCTA
* * * *
97032152 ATTTCAATTTCTGTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAGGACAC
* *
97032216 GTTGAGGTA
65 GCTGAGCTA
97032225 TTTT
1 TTTT
97032229 TAGTTTATGT
Statistics
Matches: 137, Mismatches: 12, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
73 54 0.39
74 3 0.02
75 24 0.18
76 5 0.04
77 47 0.34
78 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCAGGACACG
CTGAGCTA
Found at i:97032154 original size:206 final size:201
Alignment explanation
Indices: 97031805--97032203 Score: 523
Period size: 206 Copynumber: 2.0 Consensus size: 201
97031795 GGTATTTTCG
* * *
97031805 ATTTCTGTCTTTCAAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAACACACGCTGA
* *
97031870 GGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGAC
66 GCTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGAC
* * *
97031935 ACGTTGAGGTAATTTCAATTTCTGTTTGTC-AAGAACCAACTCATATTGCGAGAGGTGGGTTGAA
131 ACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAA
97031999 CCTTTTA
195 CCTTTTA
* * * * * * *
97032006 ATTTCTGTTTTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCTTTGGC-TCACACGC
1 ATTTCTGTCTTTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGC-CT--CAACACACGC
* ** *
97032070 TGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
63 TGAGCTAATTTCAATTTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAACCT
* * *
97032135 CAGGATACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAG
125 CAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAACCAACTCATATTGCGAGAGGTGAG
97032200 TTGA
190 TTGA
97032204 GCCTCGGGGC
Statistics
Matches: 169, Mismatches: 22, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
201 44 0.26
202 1 0.01
203 24 0.14
204 5 0.03
205 5 0.03
206 90 0.53
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (201 bp):
ATTTCTGTCTTTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAACACACGCTGA
GCTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGAC
ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAAC
CTTTTA
Found at i:97032196 original size:73 final size:74
Alignment explanation
Indices: 97032001--97032686 Score: 378
Period size: 75 Copynumber: 9.2 Consensus size: 74
97031991 GGGTTGAACC
* **
97032001 TTTT-AATTTCTGTTTTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAG-CTTTGGCTC
1 TTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
*
97032064 ACACGCTGAGCTA
62 ACACGCTGAGGTA
*
97032077 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
97032142 CGCTGAGGTA
65 CGCTGAGGTA
* * * *
97032152 ATTTCAATTTCTGTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
97032216 GTTGAGGTA
66 GCTGAGGTA
* * * * ** * * * ***
97032225 TTTTTAGTTTATG-TTT--AGAAAATTGACTCATCTTGCGAAAGGTGAGTTAAGCCT-TTTA-AT
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-
**
97032285 TTCT---GT-
65 CGCTGAGGTA
** * * ** * * * * * * *
97032291 TTTTCAAAAATCAACTCATATTGCGAGAGATGAGTCGAGC-C-T-TGGCTCACGTGCTGAGCT-A
1 TTTTC---AAT-TTCT-GT-TTTC-A-A-AAAAATC-AACTCATATTGC-GA-GAGGTGAGTTGA
*** *** *
97032352 TTTTCA--A-TTTCT--GCT-
54 GCCTCAGGACACGCTGAGGTA
* * *
97032367 TTTT-AATTCCTACTTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
97032429 TGCTAAGGTA
65 CGCTGAGGTA
* * *** *
97032439 ATTCCAATTTCTGTTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TTTTCAATTTCTG----T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
97032504 GGCACGCTGAGGTA
61 GACACGCTGAGGTA
97032518 TTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
97032583 CGCTGAGGTA
65 CGCTGAGGTA
* * * * *
97032593 ATTTCAATTTCTGTTCATCAAAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGTCTCAGGTCA
1 TTTTCAATTTCTGTT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
*
97032658 CACGCCGAGGTA
63 CACGCTGAGGTA
*
97032670 TTTTCAATTTCCGTTTT
1 TTTTCAATTTCTGTTTT
97032687 TCAATTTCTG
Statistics
Matches: 465, Mismatches: 103, Indels: 84
0.71 0.16 0.13
Matches are distributed among these distances:
64 2 0.00
65 11 0.02
66 10 0.02
67 5 0.01
68 1 0.00
69 6 0.01
70 5 0.01
71 37 0.08
72 7 0.02
73 68 0.15
74 5 0.01
75 137 0.29
76 17 0.04
77 80 0.17
78 13 0.03
79 61 0.13
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTA
Found at i:97032847 original size:54 final size:54
Alignment explanation
Indices: 97032709--97032962 Score: 474
Period size: 54 Copynumber: 4.7 Consensus size: 54
97032699 TTCAAAAAAA
97032709 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
97032763 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
*
97032819 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTG-TTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
97032872 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
97032926 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
97032963 CGGGTCACAT
Statistics
Matches: 195, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
53 52 0.27
54 89 0.46
56 54 0.28
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (54 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
Found at i:97032922 original size:107 final size:109
Alignment explanation
Indices: 97032709--97032958 Score: 468
Period size: 107 Copynumber: 2.3 Consensus size: 109
97032699 TTCAAAAAAA
*
97032709 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAAAATCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTGTTTTTC-AAAAAATCAA
97032774 CTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
65 CTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
97032819 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTG-TTTTC-AAAAATCAAC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTGTTTTTCAAAAAATCAAC
97032882 TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
66 TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
97032926 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
97032959 GCCTCGGGTC
Statistics
Matches: 139, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
107 87 0.63
109 5 0.04
110 47 0.34
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.36
Consensus pattern (109 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTGTTTTTCAAAAAATCAAC
TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
Found at i:97035210 original size:3 final size:3
Alignment explanation
Indices: 97035152--97035197 Score: 65
Period size: 3 Copynumber: 14.7 Consensus size: 3
97035142 ATATATTTAC
*
97035152 ATT ATT ATT GCATT ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT --ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
97035198 ATACTCTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 36 0.92
5 3 0.08
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:97039484 original size:18 final size:18
Alignment explanation
Indices: 97039463--97039501 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
97039453 GAACTTTTGC
*
97039463 AATTTGAATAACTTAAAT
1 AATTTGAATAACTCAAAT
97039481 AATTTGAATAACTCAAAT
1 AATTTGAATAACTCAAAT
97039499 AAT
1 AAT
97039502 AAATAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.36
Consensus pattern (18 bp):
AATTTGAATAACTCAAAT
Found at i:97039954 original size:33 final size:33
Alignment explanation
Indices: 97039894--97039972 Score: 99
Period size: 31 Copynumber: 2.4 Consensus size: 33
97039884 CTCTCTCAAC
* *
97039894 AAAAATTTCAAAAAAATTCAATATAAC-TTTT-
1 AAAAATTTAAAAAAAATTCAAAATAACTTTTTG
97039925 AAAAATTTAAAAAAAATTCCAAAATTAACTTTTTG
1 AAAAATTTAAAAAAAATT-CAAAA-TAACTTTTTG
*
97039960 AAAAAATTAAAAA
1 AAAAATTTAAAAA
97039973 TTCTAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
31 17 0.41
32 4 0.10
33 4 0.10
34 4 0.10
35 12 0.29
ACGTcount: A:0.59, C:0.08, G:0.01, T:0.32
Consensus pattern (33 bp):
AAAAATTTAAAAAAAATTCAAAATAACTTTTTG
Found at i:97041046 original size:34 final size:34
Alignment explanation
Indices: 97040974--97041050 Score: 91
Period size: 34 Copynumber: 2.3 Consensus size: 34
97040964 AAGTACATGT
* * ** *
97040974 TAAGCATGTTTATTGCTATCGTATTAATCTGTTT
1 TAAGCATGTTTATTGCTACCATATTAATCCATTA
* *
97041008 TAAGCATGTTTATTGTTACCATATTGATCCATTA
1 TAAGCATGTTTATTGCTACCATATTAATCCATTA
97041042 TAAGCATGT
1 TAAGCATGT
97041051 CATATTGTAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.27, C:0.13, G:0.14, T:0.45
Consensus pattern (34 bp):
TAAGCATGTTTATTGCTACCATATTAATCCATTA
Found at i:97043212 original size:27 final size:27
Alignment explanation
Indices: 97043182--97043234 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
97043172 AGGCAAGACC
* *
97043182 GGTCTTGTCTTTGTCAGAGACGGCACT
1 GGTCTTGCCTCTGTCAGAGACGGCACT
*
97043209 GGTCTTGCCTCTGTCAGAGGCGGCAC
1 GGTCTTGCCTCTGTCAGAGACGGCAC
97043235 CCAAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.13, C:0.26, G:0.32, T:0.28
Consensus pattern (27 bp):
GGTCTTGCCTCTGTCAGAGACGGCACT
Found at i:97043488 original size:131 final size:132
Alignment explanation
Indices: 97043324--97043734 Score: 654
Period size: 130 Copynumber: 3.1 Consensus size: 132
97043314 AATAAAATAC
* * * *
97043324 TAGTATATTTTAAAAAATAAAATCCAAAAATTTTA-AAA-ATATA-AACAAAGAGACAAAATTAA
1 TAGTATATTTTAAAAAATAAAAT-CAAATATTTTAGAAATACAAATAATAAAGAGACAAAATTAA
* * *
97043386 GGTTATTTAAAAAAACACTAAAGTAATACATTTATGTACTAAAATAAAATAAAATATAAAATACG
65 GGTTATAT-AAAAAACACTAAAGTAATACATTTATGTACTAAAATAAGATAAAAAATAAAATACG
97043451 AAAA
129 AAAA
*
97043455 TAGTATATTTTAAAAAATAAAATCAGAATATTTTAGAAATACAAATAATAAAGAGACAAAATTAG
1 TAGTATATTTTAAAAAATAAAATCA-AATATTTTAGAAATACAAATAATAAAGAGACAAAATTAA
97043520 GGTTATATAAAAAA-ACTAAAGTAATACATTTATGTACTAAAATAAGATAAAAAATAAAAT--GA
65 GGTTATATAAAAAACACTAAAGTAATACATTTATGTACTAAAATAAGATAAAAAATAAAATACGA
97043582 AAA
130 AAA
*
97043585 TAGTATATTTTAAAAAATAAAATCATAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAA
1 TAGTATATTTTAAAAAATAAAATCA-AATATTTTAGAAATACAAATAATAAAGAGACAAAATTAA
*
97043650 GGTTATATAAAAAACACTAAAATAATACATTTATGTACTAAAATAAGATAAAAAATAAAATACGA
65 GGTTATATAAAAAACACTAAAGTAATACATTTATGTACTAAAATAAGATAAAAAATAAAATACGA
97043715 AAA
130 AAA
97043718 TAGTATATTTTAAAAAA
1 TAGTATATTTTAAAAAA
97043735 ATATGCATCC
Statistics
Matches: 261, Mismatches: 12, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
130 83 0.32
131 76 0.29
132 47 0.18
133 31 0.12
134 24 0.09
ACGTcount: A:0.59, C:0.06, G:0.08, T:0.28
Consensus pattern (132 bp):
TAGTATATTTTAAAAAATAAAATCAAATATTTTAGAAATACAAATAATAAAGAGACAAAATTAAG
GTTATATAAAAAACACTAAAGTAATACATTTATGTACTAAAATAAGATAAAAAATAAAATACGAA
AA
Found at i:97043630 original size:23 final size:23
Alignment explanation
Indices: 97043575--97043635 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
97043565 GATAAAAAAT
*
97043575 AAAATGAAAATAGT-ATATTTTAA
1 AAAAT-AAAATAATAATATTTTAA
*
97043598 AAAATAAAATCATAATATTTT-A
1 AAAATAAAATAATAATATTTTAA
*
97043620 GAAATACAAATAATAA
1 AAAATA-AAATAATAA
97043636 AGGGACAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 12 0.38
23 20 0.62
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (23 bp):
AAAATAAAATAATAATATTTTAA
Found at i:97043750 original size:12 final size:12
Alignment explanation
Indices: 97043733--97043758 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97043723 TATTTTAAAA
97043733 AAATATGCATCC
1 AAATATGCATCC
97043745 AAATATGCATCC
1 AAATATGCATCC
97043757 AA
1 AA
97043759 CGGGACATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (12 bp):
AAATATGCATCC
Found at i:97044258 original size:11 final size:11
Alignment explanation
Indices: 97044244--97044269 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97044234 TTCTTTCATA
97044244 TTTTATTGTAT
1 TTTTATTGTAT
97044255 TTTTATTGTAT
1 TTTTATTGTAT
97044266 TTTT
1 TTTT
97044270 TTTCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (11 bp):
TTTTATTGTAT
Found at i:97044292 original size:19 final size:19
Alignment explanation
Indices: 97044237--97044310 Score: 70
Period size: 19 Copynumber: 4.2 Consensus size: 19
97044227 GAAATATTTC
*
97044237 TTTCATATTTTATTGTA-T
1 TTTCATATTTTATTATATT
*
97044255 TTT--TATTGTATT-T-TT
1 TTTCATATTTTATTATATT
97044270 TTTCATATTTTA-TACTATT
1 TTTCATATTTTATTA-TATT
*
97044289 TTTCGTATTTTATTATATT
1 TTTCATATTTTATTATATT
97044308 TTT
1 TTT
97044311 TTCATATTCT
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
15 5 0.11
16 9 0.20
17 6 0.13
18 4 0.09
19 20 0.43
20 2 0.04
ACGTcount: A:0.20, C:0.05, G:0.04, T:0.70
Consensus pattern (19 bp):
TTTCATATTTTATTATATT
Found at i:97044311 original size:21 final size:21
Alignment explanation
Indices: 97044255--97044323 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 21
97044245 TTTATTGTAT
*
97044255 TTTTATTGTATTTTTTTTCATA
1 TTTTATTATA-TTTTTTTCATA
*
97044277 TTTTA-TACTA--TTTTTCGTA
1 TTTTATTA-TATTTTTTTCATA
97044296 TTTTATTATATTTTTTTCATA
1 TTTTATTATATTTTTTTCATA
*
97044317 TTCTATT
1 TTTTATT
97044324 TTTTCATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 15 0.38
20 2 0.05
21 15 0.38
22 7 0.18
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTTATTATATTTTTTTCATA
Found at i:97044385 original size:27 final size:27
Alignment explanation
Indices: 97044347--97044400 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
97044337 ATTTTTTTGG
97044347 GTGCCGCCTCTGACAGAGGCAAGACCA
1 GTGCCGCCTCTGACAGAGGCAAGACCA
*
97044374 GTGCCGCCTCTGGCAGAGGCAAGACCA
1 GTGCCGCCTCTGACAGAGGCAAGACCA
97044401 ATATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.33, G:0.31, T:0.11
Consensus pattern (27 bp):
GTGCCGCCTCTGACAGAGGCAAGACCA
Found at i:97046223 original size:22 final size:22
Alignment explanation
Indices: 97046198--97046241 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
97046188 ATAAATAAAA
*
97046198 ACCTTGGCCACTTAAACCACCC
1 ACCTTGGCCACCTAAACCACCC
97046220 ACCTTGGCCACCTAAACCACCC
1 ACCTTGGCCACCTAAACCACCC
97046242 CAACCACTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.48, G:0.09, T:0.16
Consensus pattern (22 bp):
ACCTTGGCCACCTAAACCACCC
Found at i:97046385 original size:22 final size:21
Alignment explanation
Indices: 97046287--97046384 Score: 81
Period size: 22 Copynumber: 4.5 Consensus size: 21
97046277 CATTCAAGAC
*
97046287 TTTGTTTTTAGGAGGTGGGTT
1 TTTGTTTTTTGGAGGTGGGTT
*
97046308 TTTGGTTTTTTGGAGGAGGGTT
1 TTT-GTTTTTTGGAGGTGGGTT
** *
97046330 GTTCT-TTGTTTTGGAGAAGGTTTT
1 -TT-TGTT-TTTTGGAGGTGG-GTT
**
97046354 TTTGTTTTTTGGAGGTGTTTT
1 TTTGTTTTTTGGAGGTGGGTT
97046375 TTTGTTTTTT
1 TTTGTTTTTT
97046385 TTAGAAAGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
21 16 0.25
22 28 0.44
23 17 0.27
24 3 0.05
ACGTcount: A:0.08, C:0.01, G:0.32, T:0.59
Consensus pattern (21 bp):
TTTGTTTTTTGGAGGTGGGTT
Found at i:97048889 original size:3 final size:3
Alignment explanation
Indices: 97048876--97048961 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
97048866 GAGGGCATAT
97048876 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
97048920 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
97048962 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:97048900 original size:12 final size:12
Alignment explanation
Indices: 97048876--97048958 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
97048866 GAGGGCATAT
97048876 ATAATAT-AATA
1 ATAATATAAATA
97048887 ATAATATAAATA
1 ATAATATAAATA
97048899 ATAATATATACATGA
1 ATAATATA-A-AT-A
97048914 GA-AATA-ATAATA
1 -ATAATATA-AATA
97048926 ATAATATAAATA
1 ATAATATAAATA
* *
97048938 ATAGTAAAAATA
1 ATAATATAAATA
*
97048950 ATAAAATAA
1 ATAATATAA
97048959 TAAAACAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:97048920 original size:21 final size:18
Alignment explanation
Indices: 97048881--97048961 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
97048871 CATATATAAT
*
97048881 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
97048899 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
97048920 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
97048938 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
97048955 ATAATAA
1 ATAATAA
97048962 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:97048949 original size:27 final size:27
Alignment explanation
Indices: 97048876--97048962 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
97048866 GAGGGCATAT
* *
97048876 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
97048902 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
97048926 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
97048953 A-AATAATAAA
1 ATAAT-ATAAA
97048963 ACAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:97049319 original size:23 final size:20
Alignment explanation
Indices: 97049294--97049344 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
97049284 TTCTTTCCAA
97049294 AAAAAACAAAAAAACACCTCC
1 AAAAAACAAAAAAA-ACCTCC
97049315 AAAAAACAAAAAAAACCTCC
1 AAAAAACAAAAAAAACCTCC
**
97049335 TCAAAACAAA
1 AAAAAACAAA
97049345 GAACAATCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (20 bp):
AAAAAACAAAAAAAACCTCC
Found at i:97049326 original size:22 final size:21
Alignment explanation
Indices: 97049294--97049390 Score: 81
Period size: 21 Copynumber: 4.5 Consensus size: 21
97049284 TTCTTTCCAA
97049294 AAAAAACAAAAAAACACCTCC
1 AAAAAACAAAAAAACACCTCC
97049315 AAAAAACAAAAAAA-ACCTCC
1 AAAAAACAAAAAAACACCTCC
** *
97049335 TCAAAACAAAGAACAATCCTCCTCC
1 AAAAAACAAA-AA-AA--CACCTCC
**
97049360 AAAAAACCAAAAACCCACCT-C
1 AAAAAA-CAAAAAAACACCTCC
*
97049381 TAAAAACAAA
1 AAAAAACAAA
97049391 GTCTTGAATG
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
20 18 0.30
21 22 0.36
22 6 0.10
25 11 0.18
26 4 0.07
ACGTcount: A:0.61, C:0.30, G:0.01, T:0.08
Consensus pattern (21 bp):
AAAAAACAAAAAAACACCTCC
Found at i:97049528 original size:4 final size:4
Alignment explanation
Indices: 97049519--97049545 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
97049509 GGCCAAGGTT
97049519 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
97049546 TTTGTGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:97049934 original size:44 final size:44
Alignment explanation
Indices: 97049886--97050611 Score: 626
Period size: 44 Copynumber: 16.5 Consensus size: 44
97049876 CTTCGATCCA
* *
97049886 TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCATCTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCATCTTG
* * * **
97049930 TTCCCTATAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTAC
1 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTC-ATCTTG
* * * * * * * *
97049974 TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATC-CG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTC-ATCTTG
* * * *
97050018 TTCCCTATAAGCACTGGGATGCCAAATCTGTTGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCATCTTG
* *
97050062 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCATCTTG
* *
97050106 TTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TG
1 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCATCTTG
* * * * * * *
97050149 CTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGATC-CG
1 -TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTC-ATCTTG
* *
97050194 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCATCTTG
** * *
97050238 TTCCCTATAAGCACAGGGATGCCAAATCTGACGTTTTTAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCATCTTG
* * *
97050282 TTCCCAATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TG
1 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCATCTTG
* * * * * * *
97050325 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATC-TG
1 -TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTC-ATCTTG
* *
97050370 TTCCCTATAAGCACAGGGATGCCAAATCT-ACTGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGA-TATTTTCATCTTG
* * **
97050414 TTCCC-ATAAGCACAGGGATGCC--ATGCTAAAATCTTAGATC-TG
1 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCATCTTG
* * * *
97050456 CTTCACC-GTAAGCACAGGGATGCCAAATCTGCTATCTTCGATC-CG
1 -TTC-CCTATAAGCACAGGGATGCCAAATCTGATATTTTC-ATCTTG
* *
97050501 TTCCCTATAAGCACAGGGATGCCAAATCT-ATTTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCATCTTG
* *
97050544 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCATCTTG
97050588 TTCCCTATAAGCACAGGGATGCCA
1 TTCCCTATAAGCACAGGGATGCCA
97050612 TGCTGAAATC
Statistics
Matches: 558, Mismatches: 93, Indels: 62
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.00
42 13 0.02
43 89 0.16
44 406 0.73
45 40 0.07
46 8 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCATCTTG
Done.