Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 331 of 335
Found at i:97050086 original size:176 final size:176
Alignment explanation
Indices: 97049886--97050611 Score: 1015
Period size: 176 Copynumber: 4.1 Consensus size: 176
97049876 CTTCGATCCA
* *
97049886 TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCATCTTGTTCCCTATAAGCACAGGGATG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
* * *
97049951 TCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATC
66 CCATGCTGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGATC
* *
97050016 CGTTCCCTATAAGCACTGGGATGCCAAATCTGTTGTTTTCAACTTG
131 CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
97050062 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
*
97050127 CCATGCTGAAATCTTTGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGATC
66 CCATGCTGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGATC
97050192 CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
131 CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
* * *
97050238 TTCCCTATAAGCACAGGGATGCCAAATCTGACGTTTTTAACTTGTTCCCAATAAGCACAGGGATG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
* *
97050303 CCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATC
66 CCATGCTGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGATC
*
97050368 TGTTCCCTATAAGCACAGGGATGCCAAATCT-ACTGTTTTCAACTTG
131 CGTTCCCTATAAGCACAGGGATGCCAAATCTGA-TGTTTTCAACTTG
* ** * *
97050414 TTCCC-ATAAGCACAGGGATGCC--ATGCTAAAATCTT-AGA-TCTGCTTCACC-GTAAGCACAG
1 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATGTTTTCA-ACT-TG-TTC-CCTATAAGCACAG
** * * * * * * * *
97050473 GGATGCCAAAT-CTGCTATCTTCGATCCG-TTCCCTATAAGCACAGGGATGCCAAATCT-ATTTT
61 GGATGCC--ATGCTGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATC
* *
97050535 TTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
124 TTCGATC-CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
97050588 TTCCCTATAAGCACAGGGATGCCA
1 TTCCCTATAAGCACAGGGATGCCA
97050612 TGCTGAAATC
Statistics
Matches: 507, Mismatches: 31, Indels: 24
0.90 0.06 0.04
Matches are distributed among these distances:
173 6 0.01
174 63 0.12
175 79 0.16
176 357 0.70
177 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (176 bp):
TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
CCATGCTGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGATC
CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
Found at i:97050471 original size:87 final size:87
Alignment explanation
Indices: 97050377--97050648 Score: 308
Period size: 87 Copynumber: 3.1 Consensus size: 87
97050367 CTGTTCCCTA
97050377 TAAGCACAGGGATGCCAAATCTACTGTTTTCAACTTGTTCCC-ATAAGCACAGGGATGCCATGCT
1 TAAGCACAGGGATGCCAAATCTACTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
97050441 AAAATCTTAGATCTGCTTCACCG
66 -AAATCTTAGATCTGCTTCACCG
* * * * *
97050464 TAAGCACAGGGATGCCAAATCTGCTATCTTCGA-TCCGTTCCCTATAAGCACAGGGATGCCAAAT
1 TAAGCACAGGGATGCCAAATCTACTGTTTTCAACT-TGTTCCCTATAAGCACAGGGATGCC--AT
** * *
97050528 -CTATTTTTTCA-A-CTTG-TTC-CCTA
63 GCTAAATCTT-AGATC-TGCTTCACC-G
97050551 TAAGCACAGGGATGCCAAATCTGA-TGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
1 TAAGCACAGGGATGCCAAATCT-ACTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
* *
97050615 TGAAATCTTGGATCTGCTTCACTG
65 T-AAATCTTAGATCTGCTTCACCG
97050639 TAAGCACAGG
1 TAAGCACAGG
97050649 AATGTCAGAT
Statistics
Matches: 150, Mismatches: 20, Indels: 29
0.75 0.10 0.15
Matches are distributed among these distances:
85 2 0.01
86 5 0.03
87 98 0.65
88 39 0.26
89 4 0.03
90 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (87 bp):
TAAGCACAGGGATGCCAAATCTACTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
AAATCTTAGATCTGCTTCACCG
Found at i:97050486 original size:131 final size:132
Alignment explanation
Indices: 97050201--97050567 Score: 562
Period size: 131 Copynumber: 2.8 Consensus size: 132
97050191 CCGTTCCCTA
* * * *
97050201 TAAGCACAGGGATGCCAAATCTGATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAAT
1 TAAGCACAGGGATGCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT
* * *
97050265 CTGAC-GTTTTTAACTTGTTCCCAATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTC
65 CT-ACTGTTTTCAACTTGTTCCCAATAAGCACAGGGATGCCATGCTAAAATCTTAGATCTGCTTC
*
97050329 ACTG
129 ACCG
* * *
97050333 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATC
1 TAAGCACAGGGATGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATC
97050398 TACTGTTTTCAACTTGTTCCC-ATAAGCACAGGGATGCCATGCTAAAATCTTAGATCTGCTTCAC
66 TACTGTTTTCAACTTGTTCCCAATAAGCACAGGGATGCCATGCTAAAATCTTAGATCTGCTTCAC
97050462 CG
131 CG
*
97050464 TAAGCACAGGGATGCCAAATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
1 TAAGCACAGGGATGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATC
* *
97050529 TA-TTTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
66 TACTGTTTTCAACTTGTTCCCAATAAGCACAGGGATGCCA
97050568 AATCTGATGT
Statistics
Matches: 216, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
130 17 0.08
131 125 0.58
132 72 0.33
133 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (132 bp):
TAAGCACAGGGATGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATC
TACTGTTTTCAACTTGTTCCCAATAAGCACAGGGATGCCATGCTAAAATCTTAGATCTGCTTCAC
CG
Found at i:97050643 original size:44 final size:43
Alignment explanation
Indices: 97049829--97050648 Score: 495
Period size: 44 Copynumber: 18.7 Consensus size: 43
97049819 GATATCCGCT
* * * * * **
97049829 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCT
1 ATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCA-ATCTGAA
* ** **
97049874 ATCTTCGATCCATTCCCTATAAGCACAGGGATGCCAAATCTGCT
1 ATCTTTGATCTGTTCCCTATAAGCACAGGGATGCC-AATCTGAA
* * *
97049918 GT-TTTCATCTTGTTCCCTATAAGCACAGGGATGTC-ATGCTGAA
1 ATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAAT-CTGAA
* * * * * * **
97049961 ATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCT
1 ATCTTTGATCT-GTTCCCTATAAGCACAGGGATGCCA-ATCTGAA
* * * **
97050006 ATCTTCGATCCGTTCCCTATAAGCACTGGGATGCCAAATCTGTT
1 ATCTTTGATCTGTTCCCTATAAGCACAGGGATGCC-AATCTGAA
* * * *
97050050 GT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGAT
1 ATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCC-AATCTGAA
* * *
97050094 GT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCC-ATGCTGAA
1 ATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAAT-CTGAA
* * * **
97050137 ATCTTTGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGCT
1 ATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCA-ATCTGAA
* * *
97050182 ATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATCTGAT
1 ATCTTTGATCTGTTCCCTATAAGCACAGGGATGCC-AATCTGAA
* * * *
97050226 GT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGAC
1 ATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCC-AATCTGAA
* * * *
97050270 GT-TTTTAACTTGTTCCCAATAAGCACAGGGATGCC-ATGCTGAA
1 ATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAAT-CTGAA
* * * * **
97050313 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCT
1 ATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCA-ATCTGAA
*
97050358 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCT--A
1 ATCTTTGATCTGTTCCCTATAAGCACAGGGATGCC-AATCTGAA
* * * * *
97050400 CTGTTTTCAACTTGTTCCC-ATAAGCACAGGGATGCC-ATGCTAAA
1 AT-CTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAAT-CTGAA
* * **
97050444 ATCTTAGATCTGCTTCACC-GTAAGCACAGGGATGCCAAATCTGCT
1 ATCTTTGATCTG-TTC-CCTATAAGCACAGGGATGCC-AATCTGAA
* *
97050489 ATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATCT--A
1 ATCTTTGATCTGTTCCCTATAAGCACAGGGATGCC-AATCTGAA
* * * * *
97050531 TTTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGAT
1 ATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCC-AATCTGAA
* * *
97050576 GT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCC-ATGCTGAA
1 ATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAAT-CTGAA
* * *
97050619 ATCTTGGATCTGCTTCACTGTAAGCACAGG
1 ATCTTTGATCTG-TTCCCTATAAGCACAGG
97050649 AATGTCAGAT
Statistics
Matches: 624, Mismatches: 113, Indels: 77
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.00
42 18 0.03
43 99 0.16
44 431 0.69
45 66 0.11
46 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (43 bp):
ATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAATCTGAA
Found at i:97050831 original size:68 final size:68
Alignment explanation
Indices: 97050722--97050912 Score: 285
Period size: 68 Copynumber: 2.8 Consensus size: 68
97050712 TCTTCTTCCA
* * * *
97050722 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
97050787 -TT
66 CCT
* * *
97050789 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCTATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
97050854 TCCT
65 TCCT
*
97050858 CTGAAACTTCAAAGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGG
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGG
97050913 GAAAAAAAAT
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
68 109 0.99
69 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:97051339 original size:86 final size:84
Alignment explanation
Indices: 97050937--97051745 Score: 553
Period size: 86 Copynumber: 9.3 Consensus size: 84
97050927 AATTTCCAGC
* * * * *
97050937 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
1 CTGTTACCCTACTGCTTAGGGG-TTAA-GACCTTCATCTTCGATCTGTTTCCCTACTGCTT-AGG
* ** ** **
97051002 GGTTAAGATCTGTAAATTCAAC
63 GGTTAAGACCTACATCTTCAGT
* ** * * *
97051024 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAG
1 CTGTTACCCTACTGCTTA-GGGGTTAAGACCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTTAG
* * ** ** *
97051088 GGGTTTAAGGCTTGTAAATTC-GG
62 GGG-TTAAGACCTACATCTTCAGT
* *
97051111 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 C-TGTTACCCTACTGCTTA-GGGGTT-AAGACCTTCATCTTCGATCTGTTTCCCTACTGCTTA-G
* * *
97051176 GGGTTAAGATCTGTAAATCTTCAGC
62 GGGTTAAGA-C-CTACATCTTCAGT
* * * * * *
97051201 CTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAAT-TTGGCT-TGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTAAGACCT-T-CATCTTCGATCTGTTTCCCTACTGCTTAGGG
*
97051264 GTTAA-AGCCCATCATCTTC-GAT
64 GTTAAGA-CCTA-CATCTTCAG-T
* *
97051286 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGA
1 CTGTTACCCTACTGCTT-AGGGGTTAAGACCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG-
* * * * *
97051351 GATAAGATCTGCA-ATTCGGT
64 GTTAAGACCTACATCTTCAGT
* * *
97051371 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-CCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * *
97051436 GTTAAGATCTGTAAATCTTCAGC
64 GTTAAGA-C-CTACATCTTCAGT
* * * * * *
97051459 CTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAAT-TTGGCT-TGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTAAGACCT-T-CATCTTCGATCTGTTTCCCTACTGCTTA-GG
*
97051522 GGTTAA-AGCCCATCATCTTC-GAT
63 GGTTAAGA-CCTA-CATCTTCAG-T
* *
97051545 CTGTTTCCCTACTGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAG
1 CTGTTACCCTACTGCTTAGGGGTTAAGACCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG-G
* * * * *
97051610 ATGAGATCTGCA-ATTCAGT
65 TTAAGACCTACATCTTCAGT
* * *
97051629 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-CCTTCATCTTCGATCTGTTTCCCTACTGCTTA-GG
* * *
97051694 GGTTAAGATCTGTAAATCTTCAGC
63 GGTTAAGA-C-CTACATCTTCAGT
*
97051718 CTGTTACCCTATTGCTTAGGGGCTTAAG
1 CTGTTACCCTACTGCTTAGGGG-TTAAG
97051746 GCTTGTGAAT
Statistics
Matches: 565, Mismatches: 114, Indels: 84
0.74 0.15 0.11
Matches are distributed among these distances:
84 34 0.06
85 78 0.14
86 183 0.32
87 105 0.19
88 107 0.19
89 56 0.10
90 2 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (84 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGACCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGGT
TAAGACCTACATCTTCAGT
Found at i:97051487 original size:258 final size:259
Alignment explanation
Indices: 97051104--97051756 Score: 1161
Period size: 258 Copynumber: 2.5 Consensus size: 259
97051094 AAGGCTTGTA
* * * * *
97051104 AATTCGG-CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCGATCTGTTTCCCTA
1 AATTCGGTC-TGTTACCCTACCGATTAGGGGTTTAAGA-CCCTTCGTCTTCGATCTGTTTCCCTA
97051167 CTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTT
64 CTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTT
97051232 GTAAATTTGGCTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCT
129 GTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCT
97051296 ACTGCTTAAGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCT
194 ACTGCTT-AGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCT
97051361 GC
258 GC
97051363 AATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACT
1 AATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACT
97051428 GCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGT
66 GCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGT
97051492 AAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTAC
131 AAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTAC
*
97051557 TGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATGAGATCTGC
196 TGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGC
*
97051621 AATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACT
1 AATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACT
*
97051686 GCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGGGGCTTAAGGCTTG
66 GCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCTTG
*
97051751 TGAATT
130 TAAATT
97051757 CACTGATTCT
Statistics
Matches: 380, Mismatches: 9, Indels: 9
0.95 0.02 0.02
Matches are distributed among these distances:
258 213 0.56
259 150 0.39
260 17 0.04
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (259 bp):
AATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACT
GCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGT
AAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTAC
TGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGC
Found at i:97051700 original size:44 final size:43
Alignment explanation
Indices: 97050937--97051745 Score: 535
Period size: 44 Copynumber: 18.7 Consensus size: 43
97050927 AATTTCCAGC
* * ** *
97050937 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GATCTTCATCTTCGAT
* * * * ** * *
97050981 CTATTTCCCAACTGCTTAAGGGGTTAAGATCTGT-AAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCT-TCATCTTCGAT
* * * *
97051024 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * ** *
97051069 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATTCG-G
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGAT
** *
97051111 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
* * *
97051156 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * *
97051201 CTGTTACCCTACTGCTTA-GGGGTTAAG-GCTTGTAAAT-TTGGCT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-T-T-CATCTTCGAT
** *
97051244 -TGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
* *
97051286 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTTCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
97051329 CTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * *
97051371 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGAT
* * *
97051415 CTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * *
97051459 CTGTTACCCTACTGCTTA-GGGGTTAAG-GCTTGTAAAT-TTGGCT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-T-T-CATCTTCGAT
** *
97051502 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
*
97051545 CTGTTTCCCTACTGCTTA-GGGGTTAAGATCTTCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
97051587 CTGTTTCCCTACTGCTTAGGGAGATGAGATCTGCA-ATTC-AGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGA-T
* * * * *
97051629 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGAT
* * *
97051673 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* *
97051718 CTGTTACCCTATTGCTTAGGGGCTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
97051746 GCTTGTGAAT
Statistics
Matches: 603, Mismatches: 123, Indels: 77
0.75 0.15 0.10
Matches are distributed among these distances:
41 3 0.00
42 137 0.23
43 186 0.31
44 188 0.31
45 89 0.15
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
Found at i:97051915 original size:66 final size:64
Alignment explanation
Indices: 97051809--97051933 Score: 214
Period size: 66 Copynumber: 1.9 Consensus size: 64
97051799 TCTATGCTTA
*
97051809 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACT--ATGTGTTATGAAT
97051874 G
64 G
*
97051875 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTATGTGTTAT
97051934 TATATGAATG
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
64 9 0.16
66 48 0.84
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (64 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTATGTGTTATGAATG
Found at i:97053091 original size:8 final size:8
Alignment explanation
Indices: 97053082--97053120 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
97053072 TTTTAGAATT
*
97053082 TTTTTTTT
1 TTTTTTTG
97053090 TTTTTTTG
1 TTTTTTTG
*
97053098 TTTTTGTG
1 TTTTTTTG
*
97053106 TTTTTGTG
1 TTTTTTTG
97053114 TTTTTTT
1 TTTTTTT
97053121 TTGCCTTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (8 bp):
TTTTTTTG
Found at i:97053141 original size:6 final size:6
Alignment explanation
Indices: 97053120--97053161 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
97053110 TGTGTTTTTT
**
97053120 TTTGCC TTTGAT TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
97053162 ATATAACGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.02, C:0.29, G:0.17, T:0.52
Consensus pattern (6 bp):
TTTGCC
Found at i:97055966 original size:19 final size:20
Alignment explanation
Indices: 97055942--97055988 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
97055932 AGTGAAAGTT
97055942 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
97055961 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
97055981 -AATGCAAA
1 TAATGCAAA
97055989 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:97058547 original size:39 final size:40
Alignment explanation
Indices: 97058386--97058548 Score: 94
Period size: 39 Copynumber: 4.1 Consensus size: 40
97058376 TAATAAGAAT
* *
97058386 AATATTAAAGTAAAGTAA-AC---AATAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
* * * *
97058422 AATATATATATGTATA-TAATAGAAATACACACTACTATA-ATAA
1 AATAT-TAAAT-TAAAGTAATACAAA-A-ACAATACTATATAT-A
* * * *
97058465 TAATAATAAA-TATAGAAATACAAAAAGCAA-A-TATAATAAA
1 -AATATTAAATTAAAGTAATACAAAAA-CAATACTAT-ATATA
97058505 AATATTAAATTAAAGTAATA-AAAAACAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
97058544 AATAT
1 AATAT
97058549 ATATATATAC
Statistics
Matches: 94, Mismatches: 16, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
36 5 0.05
37 6 0.06
38 7 0.07
39 26 0.28
40 15 0.16
41 8 0.09
42 10 0.11
43 13 0.14
44 4 0.04
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.29
Consensus pattern (40 bp):
AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
Found at i:97058679 original size:3 final size:3
Alignment explanation
Indices: 97058671--97058769 Score: 53
Period size: 3 Copynumber: 32.0 Consensus size: 3
97058661 AATAGGGGTG
*
97058671 ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CAT- ATA TATA TATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA -ATA -ATA ATA
* * * * *
97058718 ATA ATA GTTA GA-A ATA AAA ATA ATA A-A AGTA ACA ATA ATG ATA GTA
1 ATA ATA -ATA -ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA
97058764 ATA ATA
1 ATA ATA
97058770 TAAATAAATA
Statistics
Matches: 76, Mismatches: 11, Indels: 18
0.72 0.10 0.17
Matches are distributed among these distances:
2 6 0.08
3 55 0.72
4 15 0.20
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:97058807 original size:3 final size:3
Alignment explanation
Indices: 97058794--97058879 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
97058784 GAGGGCATAT
97058794 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
97058838 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
97058880 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:97058818 original size:12 final size:12
Alignment explanation
Indices: 97058794--97058876 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
97058784 GAGGGCATAT
97058794 ATAATAT-AATA
1 ATAATATAAATA
97058805 ATAATATAAATA
1 ATAATATAAATA
97058817 ATAATATATACATGA
1 ATAATATA-A-AT-A
97058832 GA-AATA-ATAATA
1 -ATAATATA-AATA
97058844 ATAATATAAATA
1 ATAATATAAATA
* *
97058856 ATAGTAAAAATA
1 ATAATATAAATA
*
97058868 ATAAAATAA
1 ATAATATAA
97058877 TAAAACAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:97058838 original size:21 final size:18
Alignment explanation
Indices: 97058799--97058879 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
97058789 CATATATAAT
*
97058799 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
97058817 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
97058838 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
97058856 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
97058873 ATAATAA
1 ATAATAA
97058880 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:97058867 original size:27 final size:27
Alignment explanation
Indices: 97058794--97058880 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
97058784 GAGGGCATAT
* *
97058794 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
97058820 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
97058844 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
97058871 A-AATAATAAA
1 ATAAT-ATAAA
97058881 ACAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:97059236 original size:20 final size:21
Alignment explanation
Indices: 97059213--97059306 Score: 77
Period size: 20 Copynumber: 4.4 Consensus size: 21
97059203 TTCTTTCCAA
97059213 AAAAACAAAAAAA-CACCTCC
1 AAAAACAAAAAAACCACCTCC
* *
97059233 AAAAAAAAAAAAACCTCCTCC
1 AAAAACAAAAAAACCACCTCC
*
97059254 -AAAACAAAGAACAATCCTCCTCC
1 AAAAACAAA-AA-AA-CCACCTCC
* *
97059277 AAAAAACCAAAAACCCACCT-C
1 -AAAAACAAAAAAACCACCTCC
*
97059298 TAAAACAAA
1 AAAAACAAA
97059307 GTCTTGAATG
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
20 26 0.43
21 9 0.15
22 7 0.12
23 9 0.15
24 2 0.03
25 7 0.12
ACGTcount: A:0.60, C:0.31, G:0.01, T:0.09
Consensus pattern (21 bp):
AAAAACAAAAAAACCACCTCC
Found at i:97059236 original size:21 final size:21
Alignment explanation
Indices: 97059208--97059302 Score: 82
Period size: 22 Copynumber: 4.3 Consensus size: 21
97059198 CAACCTTCTT
*
97059208 TCCAAAAAAACAAAAAAACACC
1 TCCAAAAAAA-AAAAAACCACC
*
97059230 TCCAAAAAAAAAAAAACCTCC
1 TCCAAAAAAAAAAAAACCACC
* * *
97059251 TCCAAAACAAAGAACAATCCTCC
1 TCCAAAA-AAA-AAAAAACCACC
* *
97059274 TCCAAAAAACCAAAAACCCACC
1 TCCAAAAAA-AAAAAAACCACC
*
97059296 TCTAAAA
1 TCCAAAA
97059303 CAAAGTCTTG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
21 16 0.26
22 29 0.48
23 16 0.26
ACGTcount: A:0.58, C:0.32, G:0.01, T:0.09
Consensus pattern (21 bp):
TCCAAAAAAAAAAAAACCACC
Found at i:97059242 original size:18 final size:19
Alignment explanation
Indices: 97059214--97059250 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
97059204 TCTTTCCAAA
*
97059214 AAAACAAAAAAACACCTCC
1 AAAACAAAAAAAAACCTCC
97059233 AAAA-AAAAAAAAACCTCC
1 AAAACAAAAAAAAACCTCC
97059251 TCCAAAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.68, C:0.27, G:0.00, T:0.05
Consensus pattern (19 bp):
AAAACAAAAAAAAACCTCC
Found at i:97059276 original size:23 final size:21
Alignment explanation
Indices: 97059208--97059291 Score: 87
Period size: 21 Copynumber: 3.9 Consensus size: 21
97059198 CAACCTTCTT
* *
97059208 TCCAAAAAAACAAAAAAACACC
1 TCCAAAAAAA-AAAAAACCTCC
97059230 TCCAAAAAAAAAAAAACCTCC
1 TCCAAAAAAAAAAAAACCTCC
* *
97059251 TCCAAAACAAAGAACAATCCTCC
1 TCCAAAA-AAA-AAAAAACCTCC
**
97059274 TCCAAAAAACCAAAAACC
1 TCCAAAAAAAAAAAAACC
97059292 CACCTCTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
21 21 0.40
22 15 0.29
23 16 0.31
ACGTcount: A:0.60, C:0.31, G:0.01, T:0.08
Consensus pattern (21 bp):
TCCAAAAAAAAAAAAACCTCC
Found at i:97060339 original size:33 final size:33
Alignment explanation
Indices: 97060202--97060389 Score: 151
Period size: 33 Copynumber: 5.6 Consensus size: 33
97060192 CACATTTACA
*
97060202 GGTTCGCATAACATATAGGCTCGCATGCACCTAG
1 GGTTCGCAT-ACATATAGGCTCGCATGTACCTAG
* *
97060236 GTTTCACATAGCATATAGGCTCGCATGTACCTAG
1 GGTTCGCATA-CATATAGGCTCGCATGTACCTAG
* * * * * * *
97060270 CGTTTGCATACATATTGACTCGCTTATTCCTAG
1 GGTTCGCATACATATAGGCTCGCATGTACCTAG
* * * *
97060303 GGTTCACATACATATAGGCTCCCATGTATCTGG
1 GGTTCGCATACATATAGGCTCGCATGTACCTAG
* * * * * * * *
97060336 GGTTTGTATACATATAGGTTCACTTATTCATAG
1 GGTTCGCATACATATAGGCTCGCATGTACCTAG
*
97060369 GGTTTGCATACATATAGGCTC
1 GGTTCGCATACATATAGGCTC
97060390 ACTTATAATA
Statistics
Matches: 117, Mismatches: 36, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
33 82 0.70
34 35 0.30
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (33 bp):
GGTTCGCATACATATAGGCTCGCATGTACCTAG
Found at i:97060347 original size:66 final size:66
Alignment explanation
Indices: 97060231--97060389 Score: 192
Period size: 66 Copynumber: 2.4 Consensus size: 66
97060221 CTCGCATGCA
* * * *
97060231 CCTAGGTTTCACATAGCATATAGGCTCGCATGTACCTAGCGTTTGCATACATATTGACTCGCTTA
1 CCTAGGGTTCACATA-CATATAGGCTCCCATGTACCTAGCGTTTGCATACATATAGACTCACTTA
97060296 TT
65 TT
* * * * **
97060298 CCTAGGGTTCACATACATATAGGCTCCCATGTATCTGGGGTTTGTATACATATAGGTTCACTTAT
1 CCTAGGGTTCACATACATATAGGCTCCCATGTACCTAGCGTTTGCATACATATAGACTCACTTAT
97060363 T
66 T
* **
97060364 CATAGGGTTTGCATACATATAGGCTC
1 CCTAGGGTTCACATACATATAGGCTC
97060390 ACTTATAATA
Statistics
Matches: 79, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
66 65 0.82
67 14 0.18
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (66 bp):
CCTAGGGTTCACATACATATAGGCTCCCATGTACCTAGCGTTTGCATACATATAGACTCACTTAT
T
Found at i:97060673 original size:12 final size:12
Alignment explanation
Indices: 97060656--97060681 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97060646 AAAACAGGTC
97060656 TTTAGCGGCGTT
1 TTTAGCGGCGTT
97060668 TTTAGCGGCGTT
1 TTTAGCGGCGTT
97060680 TT
1 TT
97060682 CTAAAAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:97060809 original size:41 final size:41
Alignment explanation
Indices: 97060704--97061098 Score: 497
Period size: 41 Copynumber: 9.7 Consensus size: 41
97060694 AAAAAAATTG
* * * *
97060704 TAAAACAT-AGAGCAATAGCGGCGTTTTTGGTAAAGCACCGC
1 TAAAA-ATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* *
97060745 TAAAAA-CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
97060785 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
97060826 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* *
97060867 TAAAAATAAGAGTATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
97060908 TAAAAATCGAA-A-CATTAGCCGG-GCTTTTGGTAAAACGCCAC
1 TAAAAAT--AAGAGCATTAG-CGGCGCTTTTGGTAAAACGCCGC
* * *
97060949 TAAAAAT-CGAAGCTTTAGCAGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAG-AGCATTAGCGGCGCTTTTGGTAAAACGCCGC
97060990 TAAAAATCGAA-A-CATTAGTC-GCGCTTTTGGTAAAACGCCGC
1 TAAAAAT--AAGAGCATTAG-CGGCGCTTTTGGTAAAACGCCGC
*
97061031 TAAAAAT-CGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAG-AGCATTAGCGGCGCTTTTGGTAAAACGCCGC
97061072 TAAAAATAAGAGCATTAGCGGCG-TTTT
1 TAAAAATAAGAGCATTAGCGGCGCTTTT
97061099 CAATAGCGGC
Statistics
Matches: 318, Mismatches: 18, Indels: 37
0.85 0.05 0.10
Matches are distributed among these distances:
40 46 0.14
41 263 0.83
42 7 0.02
43 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (41 bp):
TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:97060924 original size:123 final size:123
Alignment explanation
Indices: 97060704--97061256 Score: 620
Period size: 123 Copynumber: 4.4 Consensus size: 123
97060694 AAAAAAATTG
* * * * * *
97060704 TAAAACAT-AGAGCAATAGCGGCGTTTTTGGTAAAGCACCGCTAAAAA-CAGAGCAATAGCGGCG
1 TAAAA-ATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCG
*
97060767 CTTTTGGTAAAACGCCGCTAAAAAT--AAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGC
65 CTTTTGGTAAAACGCCGCTAAAAATCGAA-A-CATTAGCGGCGCTTTTGGTAAAACGCCGC
* *
97060826 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAAATAAGAGTATTAGCGGCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGC
* *
97060891 TTTTGGTGAAACGCCGCTAAAAATCGAAACATTAGCCGG-GCTTTTGGTAAAACGCCAC
66 TTTTGGTAAAACGCCGCTAAAAATCGAAACATTAG-CGGCGCTTTTGGTAAAACGCCGC
* * *
97060949 TAAAAAT-CGAAGCTTTAGCAGCGCTTTTGGTAAAACGCCGCTAAAAATCGAA-A-CATTAGTC-
1 TAAAAATAAG-AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT--AAGAGCATTAG-CG
*
97061010 GCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
62 GCGCTTTTGGTAAAACGCCGCTAAAAATCGAAACATTAGCGGCGCTTTTGGTAAAACGCCGC
*
97061072 TAAAAATAAGAGCATTAGCGGCGTTTTCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAA
1 TAAAAATAAGAGC---A---------T---TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAA
* * * *** * *
97061137 GAGCATTAGTGGCGCTTTTGGTTAAGCGCCGCTAAAAATCGGGGCAATAGCGGCGGTTTTGGTAA
51 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAACATTAGCGGCGCTTTTGGTAA
97061202 AACGCCGC
116 AACGCCGC
97061210 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
97061257 GTTTAGGGTT
Statistics
Matches: 372, Mismatches: 30, Indels: 57
0.81 0.07 0.12
Matches are distributed among these distances:
121 2 0.01
122 43 0.12
123 204 0.55
124 7 0.02
125 4 0.01
126 1 0.00
135 2 0.01
136 2 0.01
137 1 0.00
138 106 0.28
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (123 bp):
TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGC
TTTTGGTAAAACGCCGCTAAAAATCGAAACATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:97061113 original size:56 final size:57
Alignment explanation
Indices: 97061046--97061155 Score: 195
Period size: 56 Copynumber: 1.9 Consensus size: 57
97061036 ATCGAAGCAT
*
97061046 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCG-TTTTCAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTTTCAA
*
97061102 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCATTAGTGGCGCTTTT
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTTT
97061156 GGTTAAGCGC
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
56 47 0.92
57 4 0.08
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (57 bp):
TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTTTCAA
Found at i:97061151 original size:41 final size:41
Alignment explanation
Indices: 97061102--97061256 Score: 222
Period size: 41 Copynumber: 3.8 Consensus size: 41
97061092 GCGTTTTCAA
97061102 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCAT
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCAT
* * * * * *
97061143 TAGTGGCGCTTTTGGTTAAGCGCCGCTAAAAATC-GGGGCAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA-CAAGAGCAT
* *
97061184 TAGCGGCGGTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCAT
97061225 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
97061257 GTTTAGGGTT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
41 96 0.99
42 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCAT
Found at i:97061188 original size:97 final size:98
Alignment explanation
Indices: 97061010--97061196 Score: 279
Period size: 97 Copynumber: 1.9 Consensus size: 98
97061000 AACATTAGTC
*
97061010 GCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAA
1 GCGCTTTTGGTAAAACGCCGCTAAAAATCAAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAA
*
97061075 AAATAAGAGCATTAGCGGC-GTTTTCAATAGCG
66 AAATAAGAGCAATAGCGGCGGTTTTCAATAGCG
* * *
97061107 GCGCTTTTGGTAAAACGCCGCTAAAAA-CAAGAGCATTAGTGGCGCTTTTGGTTAAGCGCCGCTA
1 GCGCTTTTGGTAAAACGCCGCTAAAAATCAA-AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
** *
97061171 AAAATCGGGGCAATAGCGGCGGTTTT
65 AAAATAAGAGCAATAGCGGCGGTTTT
97061197 GGTAAAACGC
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
96 2 0.03
97 73 0.91
98 5 0.06
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (98 bp):
GCGCTTTTGGTAAAACGCCGCTAAAAATCAAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAA
AAATAAGAGCAATAGCGGCGGTTTTCAATAGCG
Found at i:97061217 original size:138 final size:139
Alignment explanation
Indices: 97060964--97061237 Score: 437
Period size: 138 Copynumber: 2.0 Consensus size: 139
97060954 ATCGAAGCTT
97060964 TAGCAGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAACATTAGTCGCGCTTTTGGTAAAACGCC
1 TAGCAGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAACATTAGTCGCGCTTTTGGTAAAACGCC
*
97061029 GCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGC
66 GCTAAAAATCGAAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGC
97061094 G-TTTTCAA
131 GCTTTTCAA
* * * *
97061102 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA-C-AAGAGCATTAGTGGCGCTTTTGGTTAAGCG
1 TAGCAGCGCTTTTGGTAAAACGCCGCTAAAAATCGAA-A-CATTAGTCGCGCTTTTGGTAAAACG
** *
97061165 CCGCTAAAAATCGGGGCAATAGCGGCGGTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCG
64 CCGCTAAAAATCGAAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCG
97061230 GCGCTTTT
129 GCGCTTTT
97061238 GGTAAAACGC
Statistics
Matches: 125, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
136 2 0.02
137 2 0.02
138 117 0.94
139 4 0.03
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (139 bp):
TAGCAGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAACATTAGTCGCGCTTTTGGTAAAACGCC
GCTAAAAATCGAAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGC
GCTTTTCAA
Found at i:97061230 original size:179 final size:179
Alignment explanation
Indices: 97060930--97061256 Score: 489
Period size: 179 Copynumber: 1.8 Consensus size: 179
97060920 CATTAGCCGG
* *
97060930 GCTTTTGGTAAAACGCCACTAAAAATCGAAGCTTTAGCAGCGCTTTTGGTAAAACGCCGCTAAAA
1 GCTTTTGGTAAAACGCCACTAAAAATCAAAGCATTAGCAGCGCTTTTGGTAAAACGCCGCTAAAA
* *
97060995 ATCGAAACATTAGTCGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTG
66 ATCGAAACAATAGTCGCGCTTTTGGTAAAACGCCGCTAAAAATAGAAGCATTAGCGGCGCTTTTG
97061060 GTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGTTTTCAATAGCGGC
131 GTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGTTTTCAATAGCGGC
* ** * *
97061109 GCTTTTGGTAAAACGCCGCTAAAAA-CAAGAGCATTAGTGGCGCTTTTGGTTAAGCGCCGCTAAA
1 GCTTTTGGTAAAACGCCACTAAAAATCAA-AGCATTAGCAGCGCTTTTGGTAAAACGCCGCTAAA
*** *
97061173 AATCGGGGCAATAG-CGGCGGTTTTGGTAAAACGCCGCTAAAAATA-AGAGCATTAGCGGCGCTT
65 AATCGAAACAATAGTC-GCGCTTTTGGTAAAACGCCGCTAAAAATAGA-AGCATTAGCGGCGCTT
97061236 TTGGTAAAACGCCGCTAAAAA
128 TTGGTAAAACGCCGCTAAAAA
97061257 GTTTAGGGTT
Statistics
Matches: 132, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
178 4 0.03
179 128 0.97
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.23
Consensus pattern (179 bp):
GCTTTTGGTAAAACGCCACTAAAAATCAAAGCATTAGCAGCGCTTTTGGTAAAACGCCGCTAAAA
ATCGAAACAATAGTCGCGCTTTTGGTAAAACGCCGCTAAAAATAGAAGCATTAGCGGCGCTTTTG
GTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGTTTTCAATAGCGGC
Found at i:97061236 original size:82 final size:82
Alignment explanation
Indices: 97061099--97061256 Score: 271
Period size: 82 Copynumber: 1.9 Consensus size: 82
97061089 GCGGCGTTTT
* * *
97061099 CAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCATTAGTGGCGCTTTTGGTTAAGC
1 CAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTTTGGTAAAAC
97061164 GCCGCTAAAAATCGGGG
66 GCCGCTAAAAATCGGGG
* *
97061181 CAATAGCGGCGGTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAAC
1 CAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTTTGGTAAAAC
97061246 GCCGCTAAAAA
66 GCCGCTAAAAA
97061257 GTTTAGGGTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 71 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (82 bp):
CAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTTTGGTAAAAC
GCCGCTAAAAATCGGGG
Found at i:97061353 original size:21 final size:21
Alignment explanation
Indices: 97061329--97061392 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
97061319 GGTTTATGTA
97061329 TTATGGTTTAAGGGTTGGGGT
1 TTATGGTTTAAGGGTTGGGGT
* * *
97061350 TTATGATGTAAGGGTTAGGG-
1 TTATGGTTTAAGGGTTGGGGT
* *
97061370 TTAGGGGTTAAGGGTTAGGGGT
1 TTATGGTTTAAGGGTT-GGGGT
97061392 T
1 T
97061393 AATACTTAGG
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
20 12 0.36
21 20 0.61
22 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.38
Consensus pattern (21 bp):
TTATGGTTTAAGGGTTGGGGT
Found at i:97061379 original size:7 final size:7
Alignment explanation
Indices: 97061361--97061393 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
97061351 TATGATGTAA
97061361 GGGTTA-
1 GGGTTAG
97061367 GGGTTAG
1 GGGTTAG
*
97061374 GGGTTAA
1 GGGTTAG
97061381 GGGTTAG
1 GGGTTAG
97061388 GGGTTA
1 GGGTTA
97061394 ATACTTAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.18, C:0.00, G:0.52, T:0.30
Consensus pattern (7 bp):
GGGTTAG
Found at i:97061385 original size:14 final size:14
Alignment explanation
Indices: 97061361--97061394 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
97061351 TATGATGTAA
97061361 GGGTT-AGGGTTAG
1 GGGTTAAGGGTTAG
97061374 GGGTTAAGGGTTAG
1 GGGTTAAGGGTTAG
97061388 GGGTTAA
1 GGGTTAA
97061395 TACTTAGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.21, C:0.00, G:0.50, T:0.29
Consensus pattern (14 bp):
GGGTTAAGGGTTAG
Found at i:97061639 original size:21 final size:21
Alignment explanation
Indices: 97061613--97061657 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
97061603 GTTTATGGTT
* *
97061613 AGGGATATAGTTTAGGGTTTA
1 AGGGATATACTTTAGGGATTA
97061634 AGGGATATACTTTAGGGATTA
1 AGGGATATACTTTAGGGATTA
97061655 AGG
1 AGG
97061658 TTATAGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.31, C:0.02, G:0.33, T:0.33
Consensus pattern (21 bp):
AGGGATATACTTTAGGGATTA
Found at i:97061993 original size:15 final size:15
Alignment explanation
Indices: 97061973--97062021 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
97061963 TTCCCCGATT
97061973 TCCCCCAACTTCTTC
1 TCCCCCAACTTCTTC
*
97061988 TCCCCCAA---ATT-
1 TCCCCCAACTTCTTC
97061999 TCCCCCAACTTCTTC
1 TCCCCCAACTTCTTC
97062014 TCCCCCAA
1 TCCCCCAA
97062022 AATTTTTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 8 0.29
12 2 0.07
14 2 0.07
15 16 0.57
ACGTcount: A:0.18, C:0.53, G:0.00, T:0.29
Consensus pattern (15 bp):
TCCCCCAACTTCTTC
Found at i:97062005 original size:26 final size:26
Alignment explanation
Indices: 97061970--97062022 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
97061960 AATTTCCCCG
97061970 ATTTCCCCCAACTTCTTCTCCCCCAA
1 ATTTCCCCCAACTTCTTCTCCCCCAA
97061996 ATTTCCCCCAACTTCTTCTCCCCCAA
1 ATTTCCCCCAACTTCTTCTCCCCCAA
97062022 A
1 A
97062023 ATTTTTACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.21, C:0.49, G:0.00, T:0.30
Consensus pattern (26 bp):
ATTTCCCCCAACTTCTTCTCCCCCAA
Found at i:97065682 original size:17 final size:18
Alignment explanation
Indices: 97065647--97065684 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
97065637 CTTTAGGATT
97065647 TATTTTTTTTCCTTCTTC
1 TATTTTTTTTCCTTCTTC
97065665 TATTTTTTATT-CTT-TTC
1 TATTTTTT-TTCCTTCTTC
97065682 TAT
1 TAT
97065685 CCTTCTCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 11 0.58
19 2 0.11
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TATTTTTTTTCCTTCTTC
Found at i:97067027 original size:20 final size:20
Alignment explanation
Indices: 97066984--97067029 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
97066974 ACTGTTTTAT
*
97066984 TATGGG-CCAACTGTATTAA
1 TATGGGCCCAACTGTATCAA
* *
97067003 AATGGGCCCAACTGTGTCAA
1 TATGGGCCCAACTGTATCAA
97067023 TATGGGC
1 TATGGGC
97067030 AAGACCCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (20 bp):
TATGGGCCCAACTGTATCAA
Found at i:97067159 original size:28 final size:28
Alignment explanation
Indices: 97067058--97067171 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
97067048 ACTTGTAATA
* * *
97067058 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
97067086 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
97067118 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
97067147 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
97067172 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 8 0.12
30 2 0.03
31 1 0.01
32 9 0.13
33 6 0.09
34 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:97067192 original size:62 final size:61
Alignment explanation
Indices: 97067050--97067194 Score: 179
Period size: 61 Copynumber: 2.4 Consensus size: 61
97067040 ATATCTCGAC
* * *
97067050 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
* *
97067111 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
97067172 TTCTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
97067195 TAAAGCTTGA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 42 0.57
62 30 0.41
63 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:97068954 original size:183 final size:183
Alignment explanation
Indices: 97068646--97069380 Score: 1362
Period size: 183 Copynumber: 4.0 Consensus size: 183
97068636 GATATAGTTC
* * * * *
97068646 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTTCTCCTCCTACA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
97068711 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
97068776 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
97068829 CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
*
97068894 ACTATTGGTTCAATTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
97068959 GTTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
*
97069012 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
97069077 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
97069142 GTTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
* *
97069195 CATGTGTCTGTATTAGTGAATTAATGTTGTATGCATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
97069260 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
97069325 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
97069378 CAT
1 CAT
97069381 CTGTTCTAGG
Statistics
Matches: 540, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 540 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:97069599 original size:15 final size:15
Alignment explanation
Indices: 97069579--97069607 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97069569 GGAGTAGACC
97069579 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
97069594 AGGTACGTTTTATT
1 AGGTACGTTTTATT
97069608 TCAAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:97070360 original size:275 final size:275
Alignment explanation
Indices: 97069869--97070970 Score: 2138
Period size: 275 Copynumber: 4.0 Consensus size: 275
97069859 CCAACCTTAT
97069869 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
97069934 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
97069999 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
97070064 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
97070129 TGTTTGATTTTAATA
261 TGTTTGATTTTAATA
97070144 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
97070209 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
97070274 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
97070339 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
97070404 TGTTTGATTTTAATA
261 TGTTTGATTTTAATA
97070419 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
97070484 GCAAGATATAATGGATCCTCCCTAGGTG-AACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
97070548 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATGTTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
97070613 AAAATTAAACTACGATTCTTTTTTTAATATTATTATATTCAAATTACTATTTTTTTATATTAATA
196 AAAATTAAACTACGATTCTTTTTTT-ATATTATTATATTCAAATTACTATTTTTTTATATTAATA
97070678 ATGTTTGATTTTAATA
260 ATGTTTGATTTTAATA
*
97070694 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCC
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
97070759 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
97070824 AAAGACTTG-AAATAGGTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
*
97070888 AAAATTAAACTATGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
97070952 TGTTTGATTTTAATA
261 TGTTTGATTTTAATA
97070967 TTTA
1 TTTA
97070971 TGATTCTTTT
Statistics
Matches: 820, Mismatches: 5, Indels: 6
0.99 0.01 0.01
Matches are distributed among these distances:
273 59 0.07
274 131 0.16
275 585 0.71
276 45 0.05
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (275 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
TGTTTGATTTTAATA
Found at i:97070941 original size:30 final size:30
Alignment explanation
Indices: 97070906--97071018 Score: 93
Period size: 30 Copynumber: 3.4 Consensus size: 30
97070896 ACTATGATTC
97070906 TTTTTTATATTATTATATTCAAATTACTAT
1 TTTTTTATATTATTATATTCAAATTACTAT
* *
97070936 TTTTTTATATTAATAATGTTTGATTTTAATATTTA-TGATT
1 TTTTTTATA-T--T-AT-TAT-A-TTCAA-A-TTACT-A-T
97070976 CTTTTTTATATTATTATATTCAAATTACTAT
1 -TTTTTTATATTATTATATTCAAATTACTAT
97071007 TTTTTTATATTA
1 TTTTTTATATTA
97071019 ATAATGTTTG
Statistics
Matches: 66, Mismatches: 4, Indels: 26
0.69 0.04 0.27
Matches are distributed among these distances:
30 21 0.32
31 2 0.03
32 4 0.06
33 3 0.05
34 6 0.09
35 3 0.05
36 3 0.05
37 6 0.09
38 3 0.05
39 4 0.06
40 2 0.03
41 9 0.14
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (30 bp):
TTTTTTATATTATTATATTCAAATTACTAT
Found at i:97070979 original size:71 final size:69
Alignment explanation
Indices: 97070898--97071058 Score: 277
Period size: 71 Copynumber: 2.3 Consensus size: 69
97070888 AAAATTAAAC
97070898 TATGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTTT
1 TATGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTTT
97070963 AATATT
66 -ATA-T
97070969 TATGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTTT
1 TATGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTTT
*
97071034 TTAT
66 ATAT
*
97071038 TACGATTCTTTTTTTATATTA
1 TATGATTC-TTTTTTATATTA
97071059 ATATGTACTT
Statistics
Matches: 87, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
69 8 0.09
70 14 0.16
71 65 0.75
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.61
Consensus pattern (69 bp):
TATGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTTT
ATAT
Found at i:97071204 original size:15 final size:15
Alignment explanation
Indices: 97071186--97071215 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97071176 ATAATTTTTA
97071186 TAAATATTATTTAAT
1 TAAATATTATTTAAT
97071201 TAAATATTATTTAAT
1 TAAATATTATTTAAT
97071216 CCCGCTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAAATATTATTTAAT
Found at i:97071360 original size:9 final size:9
Alignment explanation
Indices: 97071320--97071509 Score: 107
Period size: 9 Copynumber: 20.6 Consensus size: 9
97071310 TATTTGATAT
*
97071320 CATAATTTA
1 CATAACTTA
*
97071329 TATAACTTA
1 CATAACTTA
* *
97071338 CAAAACGTA
1 CATAACTTA
97071347 CATAACTTA
1 CATAACTTA
*
97071356 TATAACTTA
1 CATAACTTA
* *
97071365 GATAA-ATA
1 CATAACTTA
*
97071373 TATAACTTA
1 CATAACTTA
97071382 CATAACTTA
1 CATAACTTA
97071391 CATAATACTTA
1 CAT-A-ACTTA
* *
97071402 AATATATTTTATA
1 CATA-A--CT-TA
*
97071415 TCATAATTTA
1 -CATAACTTA
97071425 CATAACTTA
1 CATAACTTA
97071434 CATAACTTA
1 CATAACTTA
*
97071443 TATAACTTA
1 CATAACTTA
* *
97071452 GATAA-ATA
1 CATAACTTA
* *
97071460 TATAATTTA
1 CATAACTTA
*
97071469 CATAA-ATA
1 CATAACTTA
* * *
97071477 TATATCATA
1 CATAACTTA
97071486 TCATAACTTA
1 -CATAACTTA
97071496 CATAACTTA
1 CATAACTTA
97071505 CATAA
1 CATAA
97071510 TACTTAAATA
Statistics
Matches: 142, Mismatches: 29, Indels: 20
0.74 0.15 0.10
Matches are distributed among these distances:
8 17 0.12
9 97 0.68
10 12 0.08
11 9 0.06
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:97071376 original size:17 final size:17
Alignment explanation
Indices: 97071354--97071509 Score: 93
Period size: 17 Copynumber: 8.9 Consensus size: 17
97071344 GTACATAACT
*
97071354 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
97071371 TATATAACTTACATAACT
1 TATATAACTTACATAA-A
* *
97071389 TACATAA--TACTTAAA
1 TATATAACTTACATAAA
** *
97071404 TATAT-TTTATATCATAATT
1 TATATAACT-TA-CATAA-A
* *
97071423 TACATAACTTACATAACT
1 TATATAACTTACATAA-A
*
97071441 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
97071458 TATATAATTTACATAAA
1 TATATAACTTACATAAA
* * *
97071475 TATATATCATATCATAACT
1 TATATAACTTA-CATAA-A
*
97071494 TACATAACTTACATAA
1 TATATAACTTACATAA
97071510 TACTTAAATA
Statistics
Matches: 105, Mismatches: 25, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
15 4 0.04
16 6 0.06
17 40 0.38
18 40 0.38
19 14 0.13
20 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.39
Consensus pattern (17 bp):
TATATAACTTACATAAA
Found at i:97071491 original size:96 final size:96
Alignment explanation
Indices: 97071293--97071500 Score: 231
Period size: 96 Copynumber: 2.1 Consensus size: 96
97071283 ATAAAAAACT
* *
97071293 TACATAATACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTACATAACTTATA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACTTAGA
* * * *
97071358 TAACTTAGATAAATATATAACTTACATAACT
66 TAACATAGATAAATACATAACATACATAACA
* * * * *
97071389 TACATAATACTTAAATATATTTTATATCATAATTTACATAACTTACATAACTTATATAACTTAGA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACTTAGA
* * * *
97071454 TAA-ATATATAATTTACATAA-ATATATATCA
66 TAACATAGATAA-ATACATAACATACATAACA
97071484 TATCATAACTTACATAA
1 TA-CATAA--TACATAA
97071501 CTTACATAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
95 14 0.15
96 72 0.78
98 6 0.07
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (96 bp):
TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACTTAGA
TAACATAGATAAATACATAACATACATAACA
Found at i:97077409 original size:31 final size:31
Alignment explanation
Indices: 97077363--97077429 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
97077353 TGGTTGTATT
* *
97077363 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
97077394 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
97077425 TTTTA
1 TTTTA
97077430 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:97077556 original size:43 final size:43
Alignment explanation
Indices: 97077503--97077764 Score: 370
Period size: 43 Copynumber: 6.1 Consensus size: 43
97077493 TGTAAAAAAG
* *
97077503 CGCCGCTAAAAGCATTGACCTTTAGCGGCGTTTTTCCCCCAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
* *
97077546 CGCCGCTAAAAGACTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
** *
97077589 CGCCGCTAAAAGCCTTGACC-TTATTGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
97077631 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTT-CCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCG-TTTTTCCCACAAA
* *
97077674 CGCCGCCAAAAGCCTTGACCTTTAGC-GC-TGCTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGT-TTTTCCCACAAA
*
97077716 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTTCCCAATAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCG-TTTTTCCC-ACAAA
97077761 CGCC
1 CGCC
97077765 ACAAATTTTT
Statistics
Matches: 196, Mismatches: 15, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
40 1 0.01
41 3 0.02
42 74 0.38
43 99 0.51
44 10 0.05
45 9 0.05
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.25
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
Found at i:97077632 original size:85 final size:85
Alignment explanation
Indices: 97077503--97077764 Score: 366
Period size: 85 Copynumber: 3.0 Consensus size: 85
97077493 TGTAAAAAAG
* ** * * *
97077503 CGCCGCTAAAAGCATTGACCTTTAGCGGCGTTTTTCCCCCAAACGCCGCTAAAAGACTTGACCTT
1 CGCCGCTAAAAGCCTTGACC-TTATTGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
97077568 TAGCGGCGCTTTTCCCACAAA
65 TAGCGGCGCTTTTCCCACAAA
97077589 CGCCGCTAAAAGCCTTGACCTTATTGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTT
1 CGCCGCTAAAAGCCTTGACCTTATTGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTT
*
97077654 AGCGGCGCTTTTTCCACAAA
66 AGCGGCGCTTTTCCCACAAA
* *
97077674 CGCCGCCAAAAGCCTTGACC-T-TTAGCGCTGCTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAGCCTTGACCTTATTGGCGCT--TTTCCCACAAACGCCGCTAAAAGCCTTGACCT
* *
97077737 TTAGCGGCGTTTTTTCCCAATAAA
64 TTAGCGGCG-CTTTTCCC-ACAAA
97077761 CGCC
1 CGCC
97077765 ACAAATTTTT
Statistics
Matches: 160, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
83 7 0.04
84 1 0.01
85 119 0.74
86 25 0.16
87 8 0.05
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.25
Consensus pattern (85 bp):
CGCCGCTAAAAGCCTTGACCTTATTGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTT
AGCGGCGCTTTTCCCACAAA
Found at i:97089907 original size:40 final size:40
Alignment explanation
Indices: 97089862--97089942 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
97089852 TAAAAAGTTC
* *
97089862 AGAACCAAATTTAACTAAAAATCGAATAAAAACTAAATTG
1 AGAACCAAATTTAACTAAAAACCAAATAAAAACTAAATTG
*
97089902 AGAACCAAATTTAACTAAAAACCAAATAAAGACTAAATTG
1 AGAACCAAATTTAACTAAAAACCAAATAAAAACTAAATTG
97089942 A
1 A
97089943 TAAATGATGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.58, C:0.14, G:0.07, T:0.21
Consensus pattern (40 bp):
AGAACCAAATTTAACTAAAAACCAAATAAAAACTAAATTG
Found at i:97100784 original size:2 final size:2
Alignment explanation
Indices: 97100779--97100814 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
97100769 ACACACACAC
*
97100779 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97100815 GAATAATAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:97100901 original size:43 final size:43
Alignment explanation
Indices: 97100817--97100913 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
97100807 ATATATATGA
* *
97100817 ATAATAGTATTAGCAATATACAATATAATATAGAAATATACAT
1 ATAATAGTATAAGAAATATACAATATAATATAGAAATATACAT
* *
97100860 ATAATAGTATAAGAAATATATAACTAATAATAT-TAAA-ATACAT
1 ATAATAGTATAAGAAATATACAA-T-ATAATATAGAAATATACAT
*
97100903 ATAATAATATA
1 ATAATAGTATA
97100914 TATATATAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
43 36 0.77
44 4 0.09
45 7 0.15
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (43 bp):
ATAATAGTATAAGAAATATACAATATAATATAGAAATATACAT
Found at i:97101406 original size:3 final size:3
Alignment explanation
Indices: 97101345--97101388 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
97101335 GAATATATAC
* *
97101345 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAC TAA TAA T
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
97101389 TCAAAAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:97103179 original size:54 final size:54
Alignment explanation
Indices: 97103097--97103529 Score: 697
Period size: 54 Copynumber: 7.9 Consensus size: 54
97103087 GACCCGAGGC
* *
97103097 TCAACTCACCTCTTGCAATATGAATTGATTTTTGAAAAACAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
*
97103151 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
* *
97103205 TCAACTCACCTCCCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
* *
97103259 TCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGGT
* *
97103314 TCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAACAGGAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
*
97103368 TCAACCCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTAAAAGGT
* *
97103423 TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAACCAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
*
97103477 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT-AAAA
97103530 CAAAAATTGA
Statistics
Matches: 354, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
53 6 0.02
54 225 0.64
55 113 0.32
56 10 0.03
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (54 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
Found at i:97103350 original size:109 final size:109
Alignment explanation
Indices: 97103093--97103529 Score: 736
Period size: 109 Copynumber: 4.0 Consensus size: 109
97103083 ATGTGACCCG
*
97103093 AGGCTCAACTCACCTCTTGCAATATGAATTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTC
1 AGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTC
97103158 ACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAA
66 ACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAA
* * *
97103201 AGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTC
1 AGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTC
*
97103266 ACCTCTCACAATATGAGTTGATTTTTTGAAAAACAGAAATTAAA
66 ACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAA
* *
97103310 AGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACCC
1 AGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTC
97103375 ACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTAAA
66 ACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAA
* *
97103419 AGGTTCAACTCACCTCTCGCAATAT-AAGTTGATTTTTGAAAACCAGAAATTAAAAGGTTCAACT
1 AGGCTCAACTCACCTCTCGCAATATGAA-TTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACT
*
97103483 CACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAA
65 CACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATT-AAA
97103529 A
1 A
97103530 CAAAAATTGA
Statistics
Matches: 308, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
108 90 0.29
109 207 0.67
110 11 0.04
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (109 bp):
AGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTC
ACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAA
Found at i:97103363 original size:163 final size:162
Alignment explanation
Indices: 97103093--97103529 Score: 705
Period size: 163 Copynumber: 2.7 Consensus size: 162
97103083 ATGTGACCCG
* *
97103093 AGGCTCAACTCACCTCTTGCAATATGAATTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTC
*
97103158 ACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCCCGCAA
66 ACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACCCACCTCCCGCAA
97103223 TATGAGTTGA-TTTTTGAAAAACAGAAATTAAA
131 TATGAGTTGATTTTTTG-AAAACAGAAATTAAA
* *
97103255 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGGTTCAACT
* * * *
97103320 CACCTCTCGCAATATGAATTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACCCACCTCTCGCA
65 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACCCACCTCCCGCA
97103385 ATATGAGTTGATTTTTTTGAAAACAGAAATTAAA
130 ATATGAGTTGA-TTTTTTGAAAACAGAAATTAAA
* * *
97103419 AGGTTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAACCAGAAATTAAAAGGTTCAACTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTC
*
97103484 ACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAA
66 ACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT-AAAA
97103530 CAAAAATTGA
Statistics
Matches: 253, Mismatches: 17, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
162 29 0.11
163 153 0.60
164 61 0.24
165 10 0.04
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (162 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTC
ACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACCCACCTCCCGCAA
TATGAGTTGATTTTTTGAAAACAGAAATTAAA
Found at i:97103528 original size:14 final size:14
Alignment explanation
Indices: 97103509--97103542 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
97103499 AGTTGATTTT
*
97103509 TTGAAAAACATAAA
1 TTGAAAAACAAAAA
97103523 TTG-AAAACAAAAA
1 TTGAAAAACAAAAA
97103536 TTGAAAA
1 TTGAAAA
97103543 TACCTCAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.65, C:0.06, G:0.09, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:97104315 original size:72 final size:72
Alignment explanation
Indices: 97103523--97105148 Score: 2097
Period size: 72 Copynumber: 22.2 Consensus size: 72
97103513 AAAACATAAA
* * * * * * *** *
97103523 TTGAAAACAAAAATTGAAAATACCTCAGCATGTGACCTGAGACTCAACTCGCCTCTCGCAATACG
1 TTGAAAACAGAAATTGAAATTACCTCA--ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
97103588 AGTTGATTTTT
64 AGTTGA--ATT
* * * * *** *
97103599 TTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCGCCTCTCGCAATACGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
97103664 TTGATTTTT
66 TTGA--ATT
* * * ** *
97103673 TTGACAACAGAAATTGAAATTACCTCACCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
97103738 TTGATTTTTT
66 TTGA---ATT
* * *
97103748 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
*
97103813 GTTGATTTTT
65 GTTGA--ATT
* * * * ** *
97103823 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAA
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
97103888 TTGATTTT
66 TTGA-ATT
* * * ** * *** *
97103896 TCTGACAACATAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 T-TGAAAACAGAAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATAT
*
97103961 GAGTTGATTTT
63 GAGTTGA-ATT
* * *
97103972 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
*
97104037 GTTGATTTTT
65 GTTGA--ATT
* * * * ** *
97104047 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAA
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
97104112 TTGATTTT
66 TTGA-ATT
* * * * ** * *** *
97104120 TCTGACAATATAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 T-TGAAAACAGAAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATAT
*
97104185 GAGTTGATTTT
63 GAGTTGA-ATT
* *
97104196 TTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
97104261 GTTGAATT
65 GTTGAATT
*
97104269 TTGAAAACAGAAATTGAAATTACCACAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97104334 TTGAATT
66 TTGAATT
* *
97104341 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
97104406 GTTGAATT
65 GTTGAATT
* *
97104414 TTGAAAATAGAAATTGAAATTACCTCACCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97104479 TTGAATT
66 TTGAATT
97104486 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97104551 TTGAATT
66 TTGAATT
97104558 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97104623 TTGAATT
66 TTGAATT
* * ** **
97104630 TTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACCCACCTCTCATAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97104695 TTGAATT
66 TTGAATT
** *
97104702 TTGAAAATTGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97104767 TTGAATT
66 TTGAATT
* *
97104774 TTGAAAAGCAGAAATTGAAAATACCTCAACGTATCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
97104839 GTTGAATT
65 GTTGAATT
97104847 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97104912 TTGAATTT
66 TTGAA-TT
*
97104920 TTG-AAACAGAAA-TAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97104983 TTGAATT
66 TTGAATT
* *
97104990 TTGGAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TT-GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
97105055 GTTGAATT
65 GTTGAATT
97105063 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97105128 TTGAATTT
66 TTGAA-TT
97105136 TTG-AAACAGAAAT
1 TTGAAAACAGAAAT
97105149 AAAAGCATTA
Statistics
Matches: 1421, Mismatches: 111, Indels: 40
0.90 0.07 0.03
Matches are distributed among these distances:
70 4 0.00
71 56 0.04
72 564 0.40
73 223 0.16
74 341 0.24
75 30 0.02
76 203 0.14
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (72 bp):
TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
TTGAATT
Found at i:97104699 original size:216 final size:216
Alignment explanation
Indices: 97103523--97105148 Score: 2124
Period size: 224 Copynumber: 7.4 Consensus size: 216
97103513 AAAACATAAA
* * * * * * *** *
97103523 TTGAAAACAAAAATTGAAAATACCTCAGCATGTGACCTGAGACTCAACTCGCCTCTCGCAATACG
1 TTGAAAACAGAAATTGAAATTACCTCA--ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
* * * * * ***
97103588 AGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCGCCTCT
64 AGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCT
* * * * * *
97103653 CGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCACCGTGTCCTGAGGCTCAA
127 CGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
** * *
97103718 CTCACCTCTCGTAATATGAGTTGATTTTTT
190 CTCATTTCTCGCAATATGAGTTGA---ATT
* * *
97103748 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * * * * **
97103813 GTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTC
65 GTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
* * * * ** *
97103878 GCAATATGAATTGATTTTTCTGACAACATAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCA
128 GCAATATGAGTTGA-ATTT-TGAAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCA
*** * *
97103943 ACTCGCCTCTCGCAATACGAGTTGATTTT
189 ACTCATTTCTCGCAATATGAGTTGA-ATT
* * *
97103972 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * * * * **
97104037 GTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTC
65 GTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
* * * * * ** *
97104102 GCAATATGAATTGATTTTTCTGACAATATAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCA
128 GCAATATGAGTTGA-ATTT-TGAAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCA
*** * *
97104167 ACTCGCCTCTCGCAATACGAGTTGATTTT
189 ACTCATTTCTCGCAATATGAGTTGA-ATT
* *
97104196 TTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
*
97104261 GTTGAATTTTGAAAACAGAAATTGAAATTACCACAACGTGTCTTGAGGCTCAACTCATTTCTCGC
65 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
97104326 AATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
130 AATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
*
97104391 TTTCTCGTAATATGAGTTGAATT
194 TTTCTCGCAATATGAGTTGAATT
* *
97104414 TTGAAAATAGAAATTGAAATTACCTCACCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97104479 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCA
66 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCA
*
97104544 ATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATT
131 ATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT
97104609 TCTCGCAATATGAGTTGAATT
196 TCTCGCAATATGAGTTGAATT
* * ** **
97104630 TTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACCCACCTCTCATAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
** *
97104695 TTGAATTTTGAAAATTGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCA
66 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCA
*
97104760 ATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTATCTTGAGGCTCAACTCAT
131 ATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAT
97104825 TTCTCGCAATATGAGTTGAATT
195 TTCTCGCAATATGAGTTGAATT
97104847 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
97104912 TTGAATTTTTG-AAACAGAAA-TAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
66 TTGAA-TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
*
97104975 AATATGAGTTGAATTTTGGAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
130 AATATGAGTTGAATTTT-GAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
97105040 TTTCTCGCAATATGAGTTGAATT
194 TTTCTCGCAATATGAGTTGAATT
97105063 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
97105128 TTGAATTTTTG-AAACAGAAAT
66 TTGAA-TTTTGAAAACAGAAAT
97105149 AAAAGCATTA
Statistics
Matches: 1312, Mismatches: 79, Indels: 28
0.92 0.06 0.02
Matches are distributed among these distances:
216 412 0.31
217 277 0.21
218 14 0.01
219 30 0.02
220 5 0.00
221 25 0.02
222 63 0.05
223 9 0.01
224 418 0.32
225 3 0.00
226 56 0.04
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (216 bp):
TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
TTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCA
ATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT
TCTCGCAATATGAGTTGAATT
Found at i:97105508 original size:18 final size:18
Alignment explanation
Indices: 97105485--97105525 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
97105475 CTTGCCCCTG
97105485 GTTGAACTTTGTCCTTGC
1 GTTGAACTTTGTCCTTGC
97105503 GTTGAACTTTGTCCTTGC
1 GTTGAACTTTGTCCTTGC
*
97105521 CTTGA
1 GTTGA
97105526 GGCTCTTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (18 bp):
GTTGAACTTTGTCCTTGC
Found at i:97107373 original size:23 final size:23
Alignment explanation
Indices: 97107342--97107401 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
97107332 GCATTTGATT
97107342 TCTTTTTTTTTTTT-TTTTCTTG
1 TCTTTTTTTTTTTTATTTTCTTG
*
97107364 TCCTTTTTTTCTTTTTATTTTTTTG
1 T-CTTTTTTT-TTTTTATTTTCTTG
*
97107389 T-TTTTTTTCTTTT
1 TCTTTTTTTTTTTT
97107402 CATGACTGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 5 0.15
23 15 0.45
24 5 0.15
25 8 0.24
ACGTcount: A:0.02, C:0.10, G:0.03, T:0.85
Consensus pattern (23 bp):
TCTTTTTTTTTTTTATTTTCTTG
Found at i:97111842 original size:12 final size:12
Alignment explanation
Indices: 97111825--97111854 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
97111815 ACACACACAC
97111825 ACATATATATAT
1 ACATATATATAT
97111837 ACATATATATAT
1 ACATATATATAT
*
97111849 ATATAT
1 ACATAT
97111855 GAATAATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ACATATATATAT
Found at i:97111941 original size:43 final size:43
Alignment explanation
Indices: 97111857--97111953 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
97111847 ATATATATGA
* *
97111857 ATAATAGTATTAGCAATATACAATATAATATAGAAATATACAT
1 ATAATAGTATAAGAAATATACAATATAATATAGAAATATACAT
* *
97111900 ATAATAGTATAAGAAATATATAACTAATAATAT-TAAA-ATACAT
1 ATAATAGTATAAGAAATATACAA-T-ATAATATAGAAATATACAT
*
97111943 ATAATAATATA
1 ATAATAGTATA
97111954 TATATAATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
43 36 0.77
44 4 0.09
45 7 0.15
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (43 bp):
ATAATAGTATAAGAAATATACAATATAATATAGAAATATACAT
Found at i:97111968 original size:14 final size:14
Alignment explanation
Indices: 97111829--97111968 Score: 50
Period size: 14 Copynumber: 10.3 Consensus size: 14
97111819 ACACACACAT
97111829 ATATATATACATAT-
1 ATATATATA-ATATA
97111843 ATATATAT-ATATGA
1 ATATATATAATAT-A
* **
97111857 ATA-ATAGTATTAGC
1 ATATATA-TAATATA
*
97111871 A-ATATACAATATA
1 ATATATATAATATA
*
97111884 ATATAGA-AATATA
1 ATATATATAATATA
*
97111897 CATATA-ATAGTATA
1 -ATATATATAATATA
*
97111911 AGA-A-AT-ATATA
1 ATATATATAATATA
* *
97111922 ACTA-ATAATATTAAA
1 A-TATAT-ATAATATA
*
97111937 ATACATATAATA-A
1 ATATATATAATATA
97111950 TATATATATAATATA
1 -ATATATATAATATA
97111965 ATAT
1 ATAT
97111969 TAAAAATTTA
Statistics
Matches: 95, Mismatches: 16, Indels: 30
0.67 0.11 0.21
Matches are distributed among these distances:
11 5 0.05
12 9 0.09
13 18 0.19
14 54 0.57
15 9 0.09
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (14 bp):
ATATATATAATATA
Found at i:97112452 original size:3 final size:3
Alignment explanation
Indices: 97112391--97112434 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
97112381 GAATATATAC
* *
97112391 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAC TAA TAA T
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
97112435 TCAAAAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:97113317 original size:1 final size:1
Alignment explanation
Indices: 97113277--97113303 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
97113267 ACAAAAACCG
97113277 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
97113304 CCCCAAGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:97114310 original size:11 final size:11
Alignment explanation
Indices: 97114290--97114326 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
97114280 CTAAATATAT
*
97114290 AAAAGAAAAAA
1 AAAAGTAAAAA
97114301 AAAAGTAAAAA
1 AAAAGTAAAAA
97114312 AAAAGTAAAAA
1 AAAAGTAAAAA
97114323 AAAA
1 AAAA
97114327 CTCGTGTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.86, C:0.00, G:0.08, T:0.05
Consensus pattern (11 bp):
AAAAGTAAAAA
Found at i:97117056 original size:425 final size:422
Alignment explanation
Indices: 97116268--97117112 Score: 1415
Period size: 425 Copynumber: 2.0 Consensus size: 422
97116258 ATATTTGTTT
97116268 TTTAATTGTAAGTTAAATTTTAAATTATAACTTTTTTATATATTTTTTAATAGTTGTTATATAAA
1 TTTAATTGTAAGTTAAATTTTAAATTATAACTTTTTTATATATTTTTTAATAGTTGTTATATAAA
*
97116333 AGGTTTATGTTTAACTTTTTTCAAATTTTTGTTAACCTTAAAACTTTTAAATACAGAAGTACCTG
66 AGGTTTATGTTTAACTTTTTTAAAATTTTTGTTAACCTTAAAACTTTTAAATACAGAAGTACCTG
*
97116398 AGGAACCACAACATCTTGCCTATGCTCATTTTGTTCCATCTTGAAGATTTGCATAAGTTGAGGAC
131 AGGAACCACAACATCTTGCCCATGCTCATTTTGTTCCATCTTGAAGATTTGCATAAGTTGAGGAC
* * *
97116463 AACCAATTATTGTGACAGATTCCAATGATTGCAGCCCTTGAGTCGTAGTGTTTGCACAAACGTAT
196 AACCAATTATTGTGACAGATTCCAATGATTGAAGCCCTTGAGTCGAAGTGTTTGCACAAACATAT
** *
97116528 TTTAAACTTTCGCAACGGTTTATCTCAAGAATTCTCAATTTCGGATAGCAACAAAGACAAGAGCC
261 TTTAAACTTTCGCAACGGCATATCTCAAGAATTCTCAATTTCGGACAGCAACAAAGACAAGAGCC
* *
97116593 ATTCTGCATATTTCAAACACACATATTAGTAAGTTATTTATTTTTAATATTATAAAGAAATTGAG
326 ATTCTGCATATTTCAAACACACATATTAATAAGTTATTTATTTTTAATATTATAAAG-AACTGAG
97116658 CATATCAATATAAACATAAATTATTAATTGATA
390 CATATCAATATAAACATAAATTATTAATTGATA
*
97116691 TTTAATTGTAAGTT-AATTTTAAATTATAAGTTTTTTTATATATTTTTTAATAGTTGTTATATAA
1 TTTAATTGTAAGTTAAATTTTAAATTATAA-CTTTTTTATATATTTTTTAATAGTTGTTATATAA
*
97116755 AAGGTTTATGTTTAAATTTTTTTTAAAATTTTTGTTAACCTTAAAACTTTTAAATACAGAAGTAC
65 AAGGTTTATGTTT-AA-CTTTTTTAAAATTTTTGTTAACCTTAAAACTTTTAAATACAGAAGTAC
*
97116820 CTGAGGAACCACAACATCTTGCCCATTCTCATTTTGTTCCATCTTGAAGATTTGCATAAGTTGAG
128 CTGAGGAACCACAACATCTTGCCCATGCTCATTTTGTTCCATCTTGAAGATTTGCATAAGTTGAG
* *
97116885 GACAACCAATTATTGTGATAGATTCCAATGATTGAAGCTCTTGAG-CAGAAGTGTTTGCACAAAC
193 GACAACCAATTATTGTGACAGATTCCAATGATTGAAGCCCTTGAGTC-GAAGTGTTTGCACAAAC
* * * * * *
97116949 ATATTTTAAACTTTTGCAATGGCATATCTGAAGAATTCTCAATTTGGGGCAGCAACAAAGACTAG
257 ATATTTTAAACTTTCGCAACGGCATATCTCAAGAATTCTCAATTTCGGACAGCAACAAAGACAAG
* *
97117014 AGTCATTCTGCATATTTCAAACACAGATATTAATAAGTTATTTATTTTTAATATTATAAAGAACT
322 AGCCATTCTGCATATTTCAAACACACATATTAATAAGTTATTTATTTTTAATATTATAAAGAACT
*
97117079 GAGCATATCAATATAAAGATAAATTATTAATTGA
387 GAGCATATCAATATAAACATAAATTATTAATTGA
97117113 AAGACTTGAT
Statistics
Matches: 394, Mismatches: 24, Indels: 7
0.93 0.06 0.02
Matches are distributed among these distances:
422 15 0.04
423 60 0.15
424 39 0.10
425 280 0.71
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (422 bp):
TTTAATTGTAAGTTAAATTTTAAATTATAACTTTTTTATATATTTTTTAATAGTTGTTATATAAA
AGGTTTATGTTTAACTTTTTTAAAATTTTTGTTAACCTTAAAACTTTTAAATACAGAAGTACCTG
AGGAACCACAACATCTTGCCCATGCTCATTTTGTTCCATCTTGAAGATTTGCATAAGTTGAGGAC
AACCAATTATTGTGACAGATTCCAATGATTGAAGCCCTTGAGTCGAAGTGTTTGCACAAACATAT
TTTAAACTTTCGCAACGGCATATCTCAAGAATTCTCAATTTCGGACAGCAACAAAGACAAGAGCC
ATTCTGCATATTTCAAACACACATATTAATAAGTTATTTATTTTTAATATTATAAAGAACTGAGC
ATATCAATATAAACATAAATTATTAATTGATA
Found at i:97122070 original size:14 final size:15
Alignment explanation
Indices: 97122044--97122072 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
97122034 AAATCGAATG
97122044 GAAGCTAGTAATTAA
1 GAAGCTAGTAATTAA
97122059 GAAGCT-GTAATTAA
1 GAAGCTAGTAATTAA
97122073 TAATTATTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.28
Consensus pattern (15 bp):
GAAGCTAGTAATTAA
Found at i:97126258 original size:16 final size:16
Alignment explanation
Indices: 97126230--97126271 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
97126220 TTTATGCTGT
*
97126230 TTATTATTCTATT-TA
1 TTATTATTATATTCTA
97126245 TTATTTATTATATTCTA
1 TTA-TTATTATATTCTA
97126262 TTATTATTAT
1 TTATTATTAT
97126272 TATCATACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 3 0.12
16 16 0.67
17 5 0.21
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATTATTATATTCTA
Found at i:97126445 original size:2 final size:2
Alignment explanation
Indices: 97126438--97126516 Score: 51
Period size: 2 Copynumber: 42.0 Consensus size: 2
97126428 TGTATATGTT
* * *
97126438 TA TA TA TA TA TA TA TA TA TA TA T- TT TC TA -A TA TA TA TA GA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
97126478 TA TA T- TA TG TA CA TA T- TT TA AA TA TA TT TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97126517 CTTCATATTA
Statistics
Matches: 59, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
1 5 0.08
2 54 0.92
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97126474 original size:30 final size:30
Alignment explanation
Indices: 97126438--97126517 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
97126428 TGTATATGTT
*
97126438 TATATATATATATATATATATAT-TTTCTAA
1 TATATATATATATATATATACATATTT-TAA
* *
97126468 TATATATAGATATATTATGTACATATTTTAA
1 TATATATATATATA-TATATACATATTTTAA
*
97126499 -ATATATTTATATAT-TATAC
1 TATATATATATATATATATAC
97126518 TTCATATTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
28 4 0.10
29 1 0.02
30 24 0.57
31 10 0.24
32 3 0.07
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (30 bp):
TATATATATATATATATATACATATTTTAA
Found at i:97128538 original size:6 final size:7
Alignment explanation
Indices: 97128521--97128555 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
97128511 TCTAAATCTC
*
97128521 AAAAAGT
1 AAAAAAT
97128528 AAAAAAT
1 AAAAAAT
97128535 AAAAAAAT
1 -AAAAAAT
97128543 AAAAAAT
1 AAAAAAT
97128550 AAAAAA
1 AAAAAA
97128556 AATCAGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:97128539 original size:8 final size:8
Alignment explanation
Indices: 97128528--97128556 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
97128518 CTCAAAAAGT
97128528 AAAAAATA
1 AAAAAATA
97128536 AAAAAAT-
1 AAAAAATA
97128543 AAAAAATA
1 AAAAAATA
97128551 AAAAAA
1 AAAAAA
97128557 ATCAGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:97128545 original size:15 final size:15
Alignment explanation
Indices: 97128521--97128556 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
97128511 TCTAAATCTC
*
97128521 AAAAAGTAAAAAATA
1 AAAAAATAAAAAATA
97128536 AAAAAATAAAAAATA
1 AAAAAATAAAAAATA
97128551 AAAAAA
1 AAAAAA
97128557 ATCAGAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (15 bp):
AAAAAATAAAAAATA
Found at i:97128805 original size:13 final size:13
Alignment explanation
Indices: 97128787--97128814 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
97128777 AAAACTCAAC
97128787 AATTGTGGAGTTG
1 AATTGTGGAGTTG
97128800 AATTGTGGAGTTG
1 AATTGTGGAGTTG
97128813 AA
1 AA
97128815 GAGGTGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36
Consensus pattern (13 bp):
AATTGTGGAGTTG
Found at i:97134776 original size:15 final size:16
Alignment explanation
Indices: 97134747--97134779 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
97134737 TATTACCAAA
97134747 AAAGTTAAAAGTCCTT
1 AAAGTTAAAAGTCCTT
*
97134763 AAAG-TAAAATTCCTT
1 AAAGTTAAAAGTCCTT
97134778 AA
1 AA
97134780 TTGCCTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.30
Consensus pattern (16 bp):
AAAGTTAAAAGTCCTT
Found at i:97138502 original size:17 final size:16
Alignment explanation
Indices: 97138464--97138504 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
97138454 AATAATAATT
**
97138464 ATTTTTATTAAATTCC
1 ATTTTTATTAAATTAA
97138480 ATTTTTATTAAATTAA
1 ATTTTTATTAAATTAA
97138496 ATATTTTAT
1 AT-TTTTAT
97138505 ATTTAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTTTTATTAAATTAA
Found at i:97139658 original size:18 final size:18
Alignment explanation
Indices: 97139624--97139658 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97139614 ACTTTTGCAA
**
97139624 TTTGAATAACTTGAATAG
1 TTTGAATAACTCAAATAG
97139642 TTTGAATAACTCAAATA
1 TTTGAATAACTCAAATA
97139659 ACAAATGGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (18 bp):
TTTGAATAACTCAAATAG
Found at i:97143356 original size:22 final size:22
Alignment explanation
Indices: 97143316--97143357 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
97143306 AATTATTATA
*
97143316 CTTTAATTTTATTACTTTTAGT
1 CTTTAATTTTATTAATTTTAGT
97143338 CTTTAATTTT-TTGAATTTTA
1 CTTTAATTTTATT-AATTTTA
97143358 AAATTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.64
Consensus pattern (22 bp):
CTTTAATTTTATTAATTTTAGT
Found at i:97148222 original size:3 final size:3
Alignment explanation
Indices: 97148201--97148250 Score: 55
Period size: 3 Copynumber: 16.0 Consensus size: 3
97148191 GTATATACAT
* * *
97148201 ATA ATA AAA ATA TACA ATA ATA TATA ATA ATA ATT ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
97148248 ATA
1 ATA
97148251 TGAAAATACA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 34 0.87
4 5 0.13
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:97148238 original size:12 final size:13
Alignment explanation
Indices: 97148199--97148247 Score: 61
Period size: 12 Copynumber: 4.1 Consensus size: 13
97148189 ATGTATATAC
97148199 ATATAATAA-AA-
1 ATATAATAATAAT
*
97148210 ATAT-ACAATAAT
1 ATATAATAATAAT
97148222 ATATAATAATAAT
1 ATATAATAATAAT
97148235 -TATAATAATAAT
1 ATATAATAATAAT
97148247 A
1 A
97148248 ATATGAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 3 0.09
11 6 0.19
12 16 0.50
13 7 0.22
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAATAATAAT
Found at i:97154146 original size:23 final size:23
Alignment explanation
Indices: 97154120--97154165 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
97154110 GAGGCCATTC
97154120 CTTGATTTTACATTTTTATTTAA
1 CTTGATTTTACATTTTTATTTAA
*
97154143 CTTGATTTTGCATTTTTATTTAA
1 CTTGATTTTACATTTTTATTTAA
97154166 AGAGTGAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.61
Consensus pattern (23 bp):
CTTGATTTTACATTTTTATTTAA
Found at i:97166268 original size:47 final size:47
Alignment explanation
Indices: 97166135--97166305 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
97166125 ATAGTAAAAC
* * * *
97166135 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTACACAGTAG-CACATATCAC--ACCGATGCCATATCCCAGA
* * * *
97166184 CATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* *
97166230 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
97166277 TATGGTCTTATACGGAAGCACATATCACA
1 TATGGTCTTACACAGTAGCACATATCACA
97166306 TTTCTCCGAA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 26 0.25
47 56 0.54
48 10 0.10
49 12 0.12
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
Found at i:97166336 original size:52 final size:48
Alignment explanation
Indices: 97166153--97166345 Score: 173
Period size: 47 Copynumber: 4.0 Consensus size: 48
97166143 TGCACATAGT
* ** * *
97166153 CACATATCACA-TACCGAGGCCATAGCCCAGCCATGGTCTTACACGG-AT
1 CACATATCACACT-CCGATGCCATAGCCCA-ATATGGTCTTATACGGAAG
* * *
97166201 CACATATCACACT--GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACTCCGATGCCATAGCCCA-ATATGGTCTTATACGGAAG
* *
97166248 CACATATCACA--CCGATGCCATATCCCGGATATGGTCTTATACGGAAG
1 CACATATCACACTCCGATGCCATAGCCC-AATATGGTCTTATACGGAAG
*
97166295 CACATATCACATTTCTCCGAAGCCATAGCCCAACTATGGTCTTATACGGAA
1 CACATATCACA---CTCCGATGCCATAGCCCAA-TATGGTCTTATACGGAA
97166346 ATCACATTTC
Statistics
Matches: 121, Mismatches: 13, Indels: 18
0.80 0.09 0.12
Matches are distributed among these distances:
46 25 0.21
47 53 0.44
48 11 0.09
49 1 0.01
51 1 0.01
52 30 0.25
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (48 bp):
CACATATCACACTCCGATGCCATAGCCCAATATGGTCTTATACGGAAG
Found at i:97171601 original size:18 final size:18
Alignment explanation
Indices: 97171562--97171602 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
97171552 CATAATATAG
* *
97171562 TAATGGTAATAATAACGT
1 TAATAGTAATAATAACGA
*
97171580 TAATAGTAATAATACCGA
1 TAATAGTAATAATAACGA
97171598 TAATA
1 TAATA
97171603 ATTTAGAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.32
Consensus pattern (18 bp):
TAATAGTAATAATAACGA
Found at i:97171804 original size:21 final size:20
Alignment explanation
Indices: 97171777--97171825 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
97171767 AACAATAGTG
97171777 AAAATAATAAGTATA-ATAA
1 AAAATAATAAGTATATATAA
*
97171796 TAAATATAAT-GGTATATATAA
1 -AAA-ATAATAAGTATATATAA
97171817 AAAATAATA
1 AAAATAATA
97171826 CTACATATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 5 0.20
20 11 0.44
21 9 0.36
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (20 bp):
AAAATAATAAGTATATATAA
Found at i:97172382 original size:2 final size:2
Alignment explanation
Indices: 97172373--97172407 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
97172363 TAATATGGAG
*
97172373 TA TA -A TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97172408 GTAAAAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:97174497 original size:44 final size:44
Alignment explanation
Indices: 97174447--97174586 Score: 131
Period size: 44 Copynumber: 3.2 Consensus size: 44
97174437 GGAGACAAAA
97174447 TCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGG
1 TCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGG
* * ** * *** ** **
97174491 TCTGTAAATTT-GGGTTGTTACCCTACTCAGGGA-GACTTGTTAAAA
1 TCTGTAATTTTCAGCCTATTACCCTACT-ATTTACG--GGGTTAAGG
97174536 TCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGG
1 TCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGG
97174580 TCTGTAA
1 TCTGTAA
97174587 ATTTGGGTTG
Statistics
Matches: 67, Mismatches: 24, Indels: 10
0.66 0.24 0.10
Matches are distributed among these distances:
43 13 0.19
44 24 0.36
45 17 0.25
46 13 0.19
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (44 bp):
TCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGG
Found at i:97174514 original size:43 final size:43
Alignment explanation
Indices: 97174465--97174620 Score: 134
Period size: 43 Copynumber: 3.6 Consensus size: 43
97174455 TTTCAGCCTA
97174465 TTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
1 TTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
*** ** ** * * ** *
97174508 TTACCCTACTCAGGGA-GACTTGTTAAAATCTGTAATTTTCAGCCTA
1 TTACCCTACT-ATTTACG--GGGTTAAGGTCTGTAAATTT-GGGTTG
97174554 TTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
1 TTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
** *
97174597 TTACCCTACTGCTTAGGGGGTTAA
1 TTACCCTACTATTTACGGGGTTAA
97174621 AGCTCATTAT
Statistics
Matches: 81, Mismatches: 27, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
43 34 0.42
44 17 0.21
45 17 0.21
46 13 0.16
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.37
Consensus pattern (43 bp):
TTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
Found at i:97174594 original size:89 final size:89
Alignment explanation
Indices: 97174443--97174606 Score: 328
Period size: 89 Copynumber: 1.8 Consensus size: 89
97174433 TCAGGGAGAC
97174443 AAAATCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
1 AAAATCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
97174508 TTACCCTACTCAGGGAGACTTGTT
66 TTACCCTACTCAGGGAGACTTGTT
97174532 AAAATCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
1 AAAATCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
97174597 TTACCCTACT
66 TTACCCTACT
97174607 GCTTAGGGGG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 75 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (89 bp):
AAAATCTGTAATTTTCAGCCTATTACCCTACTATTTACGGGGTTAAGGTCTGTAAATTTGGGTTG
TTACCCTACTCAGGGAGACTTGTT
Found at i:97174724 original size:88 final size:86
Alignment explanation
Indices: 97174594--97174765 Score: 222
Period size: 88 Copynumber: 2.0 Consensus size: 86
97174584 TAAATTTGGG
** *
97174594 TTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATTTTCGATCTG-TTTCCCTACTGCTTA-G
1 TTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATC-GATTCCCCTACTGCTTATG
97174657 GGTGATAAGATCTGCGAACTTCAGC
65 GG-G-TAAGATCTGCGAA-TTCAGC
* * * *
97174682 TTGTTACCCTACTGCTTGGGGGGTTAAAGCTCGTTGCCTTCGATCGATTCCCCTACTTCTTATGG
1 TTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATCGATTCCCCTACTGCTTATGG
*
97174747 GGTAAGATCTGTGAATTCA
66 GGTAAGATCTGCGAATTCA
97174766 CTGATTCTAG
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
86 4 0.05
87 13 0.18
88 54 0.73
89 3 0.04
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (86 bp):
TTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATCGATTCCCCTACTGCTTATGG
GGTAAGATCTGCGAATTCAGC
Found at i:97185561 original size:26 final size:26
Alignment explanation
Indices: 97185523--97185580 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
97185513 TGATACAAAT
97185523 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
97185549 TGATAAT-GTGTTAGGTGAATGTTTCA
1 TGATAATAG-GTTAGGTAAATGTTTCA
97185575 TGATAA
1 TGATAA
97185581 GAATTTCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 1 0.03
26 29 0.97
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:97187603 original size:137 final size:136
Alignment explanation
Indices: 97187357--97187642 Score: 545
Period size: 137 Copynumber: 2.1 Consensus size: 136
97187347 GAGTAGTCTC
97187357 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
97187422 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTA-C
97187487 ACTGTTA
130 ACTGTTA
97187494 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
97187559 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACA
97187624 CTGTTA
131 CTGTTA
**
97187630 CCTGAATGGGCTT
1 CCCAAATGGGCTT
97187643 AGGCCCAATG
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 19 0.13
137 128 0.87
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACA
CTGTTA
Found at i:97191459 original size:25 final size:25
Alignment explanation
Indices: 97191366--97191497 Score: 239
Period size: 25 Copynumber: 5.2 Consensus size: 25
97191356 TGATACAAAT
97191366 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
97191392 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATG-GTTAGGTAAATGTTTCA
97191418 TGATAAT-GTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTTCA
97191442 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTTCA
97191467 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTTCA
97191492 TGATAA
1 TGATAA
97191498 GAATTTCATG
Statistics
Matches: 104, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
24 24 0.23
25 49 0.47
26 31 0.30
ACGTcount: A:0.33, C:0.04, G:0.23, T:0.40
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTTCA
Found at i:97193520 original size:137 final size:136
Alignment explanation
Indices: 97193274--97193559 Score: 536
Period size: 137 Copynumber: 2.1 Consensus size: 136
97193264 GAGTAGTCTC
97193274 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
97193339 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTA-C
97193404 ACTGTTA
130 ACTGTTA
97193411 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
97193476 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACA
97193541 CTGTTA
131 CTGTTA
**
97193547 CCTGAATGGGCTT
1 CCCAAATGGGCTT
97193560 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 19 0.13
137 127 0.87
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACA
CTGTTA
Found at i:97195654 original size:21 final size:20
Alignment explanation
Indices: 97195627--97195675 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
97195617 AACAATAGTG
97195627 AAAATAATAAGTATA-ATAA
1 AAAATAATAAGTATATATAA
*
97195646 TAAATATAAT-GGTATATATAA
1 -AAA-ATAATAAGTATATATAA
97195667 AAAATAATA
1 AAAATAATA
97195676 CTACATATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 5 0.20
20 11 0.44
21 9 0.36
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (20 bp):
AAAATAATAAGTATATATAA
Found at i:97206401 original size:137 final size:137
Alignment explanation
Indices: 97206155--97206442 Score: 522
Period size: 137 Copynumber: 2.1 Consensus size: 137
97206145 CAAGTCAGCT
** *
97206155 CAAGCCCATTCAGGTAACAGTGTTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCT
1 CAAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCT
97206220 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAA
66 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAA
97206285 ACATATG
131 ACATATG
* *
97206292 CAAGCTCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCT
1 CAAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCT
*
97206357 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCGGTAA
66 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAA
97206422 ACATATG
131 ACATATG
97206429 CAAGCCCATTTGGG
1 CAAGCCCATTTGGG
97206443 GAGACTACTC
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
CAAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCT
TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAA
ACATATG
Found at i:97206727 original size:25 final size:27
Alignment explanation
Indices: 97206690--97206743 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
97206680 TCAAACATGC
97206690 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
97206716 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
97206742 AT
1 AT
97206744 AATAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:97206751 original size:26 final size:27
Alignment explanation
Indices: 97206722--97206782 Score: 79
Period size: 28 Copynumber: 2.3 Consensus size: 27
97206712 GGGTATTTCG
* *
97206722 GTAATTTTGC-ACCTAGGGGTATAATA
1 GTAATTTTCCAACATAGGGGTATAATA
*
97206748 GTAATTTTCCATACATAGGGGTATTATA
1 GTAATTTTCCA-ACATAGGGGTATAATA
97206776 GTAATTT
1 GTAATTT
97206783 AGCTGCTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 9 0.30
28 21 0.70
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GTAATTTTCCAACATAGGGGTATAATA
Found at i:97208266 original size:26 final size:26
Alignment explanation
Indices: 97208230--97208365 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
97208220 CATGATATTC
97208230 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
97208256 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
97208282 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
97208308 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
97208334 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
97208360 TTATCA
1 TTATCA
97208366 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:97209573 original size:6 final size:6
Alignment explanation
Indices: 97209562--97209617 Score: 78
Period size: 6 Copynumber: 9.3 Consensus size: 6
97209552 AACAAAAAAT
* *
97209562 AAATAA AAATAA AACA-AA AAATAA GAATAA AAATAA AAATAA ACATAA
1 AAATAA AAATAA AA-ATAA AAATAA AAATAA AAATAA AAATAA AAATAA
97209610 AAATAA AA
1 AAATAA AA
97209618 TGGATGGACT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
5 1 0.02
6 42 0.95
7 1 0.02
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:97212580 original size:24 final size:25
Alignment explanation
Indices: 97212530--97212580 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
97212520 ATTTATTTAT
*
97212530 TTATTTTAAAATATTTTATTATGTG
1 TTATTTTAAAATATTTTATTACGTG
97212555 TTATTTT-AAATATTTTA-TACGCTG
1 TTATTTTAAAATATTTTATTACG-TG
97212579 TT
1 TT
97212581 TACATTAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 3 0.12
24 14 0.58
25 7 0.29
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (25 bp):
TTATTTTAAAATATTTTATTACGTG
Found at i:97215762 original size:33 final size:38
Alignment explanation
Indices: 97215720--97215801 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
97215710 GTAAAAACAC
97215720 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
97215753 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
97215792 AATAATAATA
1 AATAGTAATA
97215802 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:97215797 original size:9 final size:9
Alignment explanation
Indices: 97215786--97215827 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
97215776 TGGTATTAGT
*
97215786 AATAATAAT
1 AATAATAAA
97215795 AATAATAGAA
1 AATAATA-AA
97215805 AATAATAAA
1 AATAATAAA
*
97215814 AATATTAAA
1 AATAATAAA
97215823 AATAA
1 AATAA
97215828 CACTCTCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 21 0.72
10 8 0.28
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (9 bp):
AATAATAAA
Found at i:97216188 original size:46 final size:46
Alignment explanation
Indices: 97216096--97216220 Score: 187
Period size: 46 Copynumber: 2.7 Consensus size: 46
97216086 TTTTGATTAA
*
97216096 TCTCCAAAAACTAGCCTTTCCAAAGAAAAAAAACCCCCTCAAACTCTTT
1 TCTCCAAAAACTGGCC-TTCC-AA-AAAAAAAACCCCCTCAAACTCTTT
*
97216145 TCTCCAAAAACTGGCCTTCCAAAAAAAAAACCTCCTCAAACTCTTT
1 TCTCCAAAAACTGGCCTTCCAAAAAAAAAACCCCCTCAAACTCTTT
* *
97216191 TCTCAAAAAACTGGCCCTCCAAAAAAAAAA
1 TCTCCAAAAACTGGCCTTCCAAAAAAAAAA
97216221 AAAACCTCCT
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
46 51 0.71
47 2 0.03
48 4 0.06
49 15 0.21
ACGTcount: A:0.43, C:0.31, G:0.05, T:0.21
Consensus pattern (46 bp):
TCTCCAAAAACTGGCCTTCCAAAAAAAAAACCCCCTCAAACTCTTT
Found at i:97216336 original size:35 final size:35
Alignment explanation
Indices: 97216290--97216358 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
97216280 TTTGTAGGCA
97216290 AGTGGAGTGGTTGGGATGGTTTAGTGGAGTGGTTT
1 AGTGGAGTGGTTGGGATGGTTTAGTGGAGTGGTTT
* * *
97216325 AGTGGGGTGGTTGGGGTGGTTTAGTGGGGTGGTT
1 AGTGGAGTGGTTGGGATGGTTTAGTGGAGTGGTT
97216359 GGAGTGGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.10, C:0.00, G:0.54, T:0.36
Consensus pattern (35 bp):
AGTGGAGTGGTTGGGATGGTTTAGTGGAGTGGTTT
Found at i:97216343 original size:22 final size:22
Alignment explanation
Indices: 97216314--97216380 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
97216304 GATGGTTTAG
97216314 TGGAGTGGTTTAGTGGGGTGGT
1 TGGAGTGGTTTAGTGGGGTGGT
*
97216336 TGGGGTGGTTTAGTGGGGTGGT
1 TGGAGTGGTTTAGTGGGGTGGT
*
97216358 TGGAGTGGTTTAGTGGAGTGGT
1 TGGAGTGGTTTAGTGGGGTGGT
97216380 T
1 T
97216381 TAGTGGGGTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.09, C:0.00, G:0.54, T:0.37
Consensus pattern (22 bp):
TGGAGTGGTTTAGTGGGGTGGT
Found at i:97217243 original size:206 final size:206
Alignment explanation
Indices: 97216876--97217737 Score: 1532
Period size: 206 Copynumber: 4.2 Consensus size: 206
97216866 AAATCTGCTT
* * *
97216876 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGA-TCTGCTTCCA-C-TAAGC
1 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACT-TGCTT-TAGCGTAAGC
* * *
97216938 ACGTGAAAGCCAAATCAGCTATGTCTTTGATTTTCTCCTTGTAAGCACAAGGATGCCAAATCATC
64 ACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATC
* * *
97217003 TTGGATCTTGCTTCGGTATAAACATCTGAAGGCCAAATCTGCTATGTATCTGCTCTCCGTCGAAA
129 TTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCGAAA
97217068 TGGAGATGCCAGA
194 TGGAGATGCCAGA
*
97217081 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAACCAC
1 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
97217146 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
*
97217211 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCGAAATG
97217276 GAGATGCCAGA
196 GAGATGCCAGA
* * *
97217287 CTTTGACTTGTTCTCTGATAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGTAC
1 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
*
97217352 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
97217417 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCGAAATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCGAAATG
97217482 GAGATGCCAGA
196 GAGATGCCAGA
97217493 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
1 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
97217558 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* *
97217623 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATTTGCTATGTATCTACTCTCCATCGAAATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCGAAATG
97217688 GAGATGCCAGA
196 GAGATGCCAGA
97217699 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCA
1 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCA
97217738 GCTATGTCTT
Statistics
Matches: 633, Mismatches: 21, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
204 1 0.00
205 50 0.08
206 582 0.92
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (206 bp):
CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCGAAATG
GAGATGCCAGA
Found at i:97217835 original size:371 final size:371
Alignment explanation
Indices: 97217358--97218108 Score: 1385
Period size: 371 Copynumber: 2.0 Consensus size: 371
97217348 GTACGCGAAA
97217358 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCT
*
97217423 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCGAAATGGAGATG
66 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATG
*
97217488 CCAGACTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
131 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
97217553 AGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATC
196 AGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATC
* *
97217618 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATTTGCTATGTATCTACTCTCCATCG
261 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCA
*
97217683 AAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAATACAGAGAT
326 AAATGGAGATGCCAGACTTCGACTTGTTCTCTAACAATACAGAGAT
*
97217729 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCT
* * *
97217794 TGCTTCAGTATAAACATCTGAGGGCTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATG
66 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATG
97217859 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
131 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
* *
97217924 AGCACGCGAAAGCCAAATCAGTTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGTCAAATC
196 AGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATC
* *
97217989 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCA
261 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCA
97218054 AAATGGAGATGCCAGACTTCGACTTGTTCTCTAACAATACAGAGAT
326 AAATGGAGATGCCAGACTTCGACTTGTTCTCTAACAATACAGAGAT
97218100 GCCAAATCA
1 GCCAAATCA
97218109 TCTTAGACTT
Statistics
Matches: 367, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
371 367 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (371 bp):
GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCT
TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATG
CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
AGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATC
ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCA
AAATGGAGATGCCAGACTTCGACTTGTTCTCTAACAATACAGAGAT
Found at i:97217836 original size:165 final size:165
Alignment explanation
Indices: 97217564--97217902 Score: 633
Period size: 165 Copynumber: 2.1 Consensus size: 165
97217554 GCACGCGAAA
97217564 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
*
97217629 TGCTTCAGTATAAACATCTGAAGGCCAGATTTGCTATGTATCTACTCTCCATCGAAATGGAGATG
66 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATG
*
97217694 CCAGACTTCGACTTGTTCTCTGACAATACAGAGAT
131 CCAGACTTCGACTTGTTCTCTAACAATACAGAGAT
97217729 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
* * *
97217794 TGCTTCAGTATAAACATCTGAGGGCTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATG
66 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATG
97217859 CCAGACTTCGACTTGTTCTCTAACAATACAGAGAT
131 CCAGACTTCGACTTGTTCTCTAACAATACAGAGAT
97217894 GCCAAATCA
1 GCCAAATCA
97217903 TCTTAGACTT
Statistics
Matches: 169, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
165 169 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (165 bp):
GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATG
CCAGACTTCGACTTGTTCTCTAACAATACAGAGAT
Found at i:97217941 original size:206 final size:206
Alignment explanation
Indices: 97217729--97218415 Score: 1268
Period size: 206 Copynumber: 3.3 Consensus size: 206
97217719 ATACAGAGAT
97217729 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
* * * *
97217794 TGCTTCAGTATAAACATCTGAGGGCTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATG
66 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCAAAATGGAGATG
97217859 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
131 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
97217924 AGCACGCGAAA
196 AGCACGCGAAA
* *
97217935 GCCAAATCAGTTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGTCAAATCATCTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
97218000 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCAAAATGGAGATG
66 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCAAAATGGAGATG
97218065 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
131 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
97218130 AGCACGCGAAA
196 AGCACGCGAAA
97218141 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
* * *
97218206 TGCTTCGGTATAAACATCTGAAGGCCAGATCTGCTATGTATCCGCTCTCCATCAAAATGGAGATG
66 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCAAAATGGAGATG
*
97218271 CCAGACTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
131 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
97218336 AGCACGCGAAA
196 AGCACGCGAAA
*
97218347 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC-
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
97218411 TGCTT
66 TGCTT
97218416 TAGCCAGATC
Statistics
Matches: 468, Mismatches: 13, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
205 5 0.01
206 463 0.99
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (206 bp):
GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCAAAATGGAGATG
CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
AGCACGCGAAA
Found at i:97218039 original size:577 final size:577
Alignment explanation
Indices: 97217152--97218314 Score: 2164
Period size: 577 Copynumber: 2.0 Consensus size: 577
97217142 CCACGCGAAA
97217152 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
*
97217217 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATG
66 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATG
* * *
97217282 CCAGACTTTGACTTGTTCTCTGATAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
131 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
*
97217347 AGTACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATC
196 AGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATC
*
97217412 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCG
261 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCA
*
97217477 AAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTT
326 AAATGGAGATGCCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTT
97217542 GCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAG
391 GCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAG
* *
97217607 GATGCCAAATCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATTTGCTATGTATCT
456 GATGCCAAATCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCC
*
97217672 ACTCTCCATCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAATACAGAGAT
521 ACTCTCCATCAAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAATACAGAGAT
97217729 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
* *
97217794 TGCTTCAGTATAAACATCTGAGGGCTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATG
66 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATG
97217859 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
131 CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
* * *
97217924 AGCACGCGAAAGCCAAATCAGTTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGTCAAATC
196 AGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATC
*
97217989 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCA
261 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCA
97218054 AAATGGAGATGCCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTT
326 AAATGGAGATGCCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTT
97218119 GCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAG
391 GCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAG
*
97218184 GATGCCAAATCATCTTGGATCTTGCTTCGGTATAAACATCTGAAGGCCAGATCTGCTATGTATCC
456 GATGCCAAATCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCC
*
97218249 GCTCTCCATCAAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAATACAGAGAT
521 ACTCTCCATCAAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAATACAGAGAT
97218306 GCCAAATCA
1 GCCAAATCA
97218315 TCTTAGACTT
Statistics
Matches: 568, Mismatches: 18, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
577 568 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (577 bp):
GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATG
CCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTA
AGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATC
ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCATCA
AAATGGAGATGCCAGACTTCGACTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTT
GCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAG
GATGCCAAATCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCC
ACTCTCCATCAAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAATACAGAGAT
Found at i:97226433 original size:18 final size:19
Alignment explanation
Indices: 97226395--97226440 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
97226385 TTATAAATAG
*
97226395 TATTATTTTCATATATCCT
1 TATTATTTTCATATATACT
97226414 TA-TATTTATCAT-TATACT
1 TATTATTT-TCATATATACT
97226432 TATTATTTT
1 TATTATTTT
97226441 ATCCTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTATTTTCATATATACT
Done.