Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 332 of 335
Found at i:97229037 original size:33 final size:34
Alignment explanation
Indices: 97228995--97229084 Score: 94
Period size: 36 Copynumber: 2.6 Consensus size: 34
97228985 GTAAAAACAC
97228995 AATAGTAATAATAATGAAAAGGTAGTA-TAAT-AT
1 AATAGTAATAATAATGAAAA-GTAGTATTAATAAT
* * *
97229028 AATAGTAATAATGATGATAATAGTGGTATTACTAAT
1 AATAGTAATAATAATGA-AA-AGTAGTATTAATAAT
*
97229064 AATAATAATAATAATAGAAAA
1 AATAGTAATAATAAT-GAAAA
97229085 TAATAACAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
33 16 0.34
34 7 0.15
35 5 0.11
36 17 0.36
37 2 0.04
ACGTcount: A:0.54, C:0.01, G:0.13, T:0.31
Consensus pattern (34 bp):
AATAGTAATAATAATGAAAAGTAGTATTAATAAT
Found at i:97229088 original size:19 final size:18
Alignment explanation
Indices: 97229064--97229105 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
97229054 TATTACTAAT
*
97229064 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
97229083 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
97229101 AATAA
1 AATAA
97229106 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:97229598 original size:33 final size:38
Alignment explanation
Indices: 97229558--97229641 Score: 106
Period size: 33 Copynumber: 2.3 Consensus size: 38
97229548 TAGTAAAAAC
97229558 ATAATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-
1 ATAATAGTAATAATAATGATAATAGGGTATTAGTAATA
*
97229591 ATAATAGTAATAATGATGATAATAGTGGTATTAGTAATA
1 ATAATAGTAATAATAATGATAATAG-GGTATTAGTAATA
*
97229630 ATAATAATAATA
1 ATAATAGTAATA
97229642 GAAAATAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 18 0.42
34 2 0.05
35 1 0.02
37 7 0.16
38 4 0.09
39 11 0.26
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (38 bp):
ATAATAGTAATAATAATGATAATAGGGTATTAGTAATA
Found at i:97229650 original size:19 final size:18
Alignment explanation
Indices: 97229626--97229667 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
97229616 TGGTATTAGT
*
97229626 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
97229645 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
97229663 AATAA
1 AATAA
97229668 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:97229849 original size:562 final size:562
Alignment explanation
Indices: 97228785--97229909 Score: 2017
Period size: 562 Copynumber: 2.0 Consensus size: 562
97228775 ACAAATAATA
97228785 AGAAAGGGAAATAATGAATAAGCTAAATGTTTGAAATTATTTAAAAAACTATAAGTAGAATAGAT
1 AGAAAGGGAAATAATGAATAAGCTAAATGTTTGAAATTATTTAAAAAACTATAAGTAGAATAGAT
97228850 GATGAAATAATAATAAAAAAAGTAATGATATGTAAATAAAATAATATGCTAAAAAATATATATTT
66 GATGAAATAATAATAAAAAAAGTAATGATATGTAAATAAAATAATATGCTAAAAAATATATATTT
97228915 ATTAAATTAGTTAATATAAAAAATAATAACGTATAAGTAAATACAAAAAAAAAATATAATAATAA
131 ATTAAATTAGTTAATATAAAAAATAATAACGTATAAGTAAATACAAAAAAAAAATATAATAATAA
97228980 TAATAGTAAAAACACAATAGTAATAATAATGAAAAGGTAGTATAATATAATAGTAATAATGATGA
196 TAATAGTAAAAACACAATAGTAATAATAATGAAAAGGTAGTATAATATAATAGTAATAATGATGA
97229045 TAATAGTGGTATTACTAATAATAATAATAATAATAGAAAATAATAACAATATTAAAAATAACACT
261 TAATAGTGGTATTA-TAATAATAATAATAATAATAGAAAATAATAACAATATTAAAAATAACACT
* * * *
97229110 CTCTCCCTCCCTTCTAAATTCGGCTATTGGTCTGGCTTTGCTCCGGTCATGGATCCCCACGGGCC
325 CTCTCCCTCCCTTCTAAATCCGGCTATTGGTCCGGCTTTGCTCCGGTCACGGATCCCCACAGGCC
* *
97229175 GCCGTCGGCGCCACCGTACACAGCGGCCGGACCTCAAAAAAAACTTTTTCGGTAATGAAAATATG
390 GCCGTCAGCGCCACCGTACACAGCGACCGGACCTCAAAAAAAACTTTTTCGGTAATGAAAATATG
97229240 GGTAAGCTTCTTACTTTTATTTTTACTTTCGTATAAAAAAACAAAATAAAATTAAAAGGAAAACA
455 GGTAAGCTTCTTACTTTTATTTTTACTTTCGTATAAAAAAACAAAATAAAATTAAAAGGAAAACA
*
97229305 ATAAACAAACAAATAACTTAAGATGAGAATAAACAAAAGAAAC
520 ATAAACAAACAAAGAACTTAAGATGAGAATAAACAAAAGAAAC
97229348 AGAAAGGGAAATAATGAATAAGCTAAATGTTTGAAATTATTTAAAAAACTATAAGTAGAATAGAT
1 AGAAAGGGAAATAATGAATAAGCTAAATGTTTGAAATTATTTAAAAAACTATAAGTAGAATAGAT
97229413 GATGAAATAATAATAACAAAAAAGTAATGATATGTAAATAAAATAAATATGCTAAAAATATATAT
66 GATGAAATAATAAT-A-AAAAAAGTAATGATATGTAAATAAAAT-AATATGCTAAAAA-ATATAT
97229478 ATTTATTAAATTAGTTAATAT-AAAAATAATAACGTATAAGTAAATACAAAAAAAGAAA-AT-AT
127 ATTTATTAAATTAGTTAATATAAAAAATAATAACGTATAAGTAAATACAAAAAAA-AAATATAAT
* *
97229540 AATAATAATAGTAAAAACATAATAGTAATAATAATGAAAAGGTATTATAATATAATAGTAATAAT
191 AATAATAATAGTAAAAACACAATAGTAATAATAATGAAAAGGTAGTATAATATAATAGTAATAAT
*
97229605 GATGATAATAGTGGTA-T-TAGTAATAATAATAATAATAGAAAATAATAACAATATTAAAAATAA
256 GATGATAATAGTGGTATTATAATAATAATAATAATAATAGAAAATAATAACAATATTAAAAATAA
*
97229668 CACTCTCTCCCTCCCTTCTAAATCCGGCTATTGGTCCGGCTTTGCTCCTGTCACGGATCCCCACA
321 CACTCTCTCCCTCCCTTCTAAATCCGGCTATTGGTCCGGCTTTGCTCCGGTCACGGATCCCCACA
* *
97229733 GGCCGCCGTCAGCGCCACCGTACACGGCGATCGGACCTCAAAAAAAACTTTTTCGGTAATGAAAA
386 GGCCGCCGTCAGCGCCACCGTACACAGCGACCGGACCTCAAAAAAAACTTTTTCGGTAATGAAAA
* *
97229798 TATGGGTAATCTTCTTACTTTTATTTTTACTTTCGTATAAAAAAACAAAATAAAATTGAAAGGAA
451 TATGGGTAAGCTTCTTACTTTTATTTTTACTTTCGTATAAAAAAACAAAATAAAATTAAAAGGAA
*
97229863 AACAATAAACAAACAAAGAACTTAAGATGAGAATAGACAAAAGAAAC
516 AACAATAAACAAACAAAGAACTTAAGATGAGAATAAACAAAAGAAAC
97229910 CTCTTTTGCT
Statistics
Matches: 541, Mismatches: 16, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
562 274 0.51
563 79 0.15
564 2 0.00
565 108 0.20
566 48 0.09
567 30 0.06
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (562 bp):
AGAAAGGGAAATAATGAATAAGCTAAATGTTTGAAATTATTTAAAAAACTATAAGTAGAATAGAT
GATGAAATAATAATAAAAAAAGTAATGATATGTAAATAAAATAATATGCTAAAAAATATATATTT
ATTAAATTAGTTAATATAAAAAATAATAACGTATAAGTAAATACAAAAAAAAAATATAATAATAA
TAATAGTAAAAACACAATAGTAATAATAATGAAAAGGTAGTATAATATAATAGTAATAATGATGA
TAATAGTGGTATTATAATAATAATAATAATAATAGAAAATAATAACAATATTAAAAATAACACTC
TCTCCCTCCCTTCTAAATCCGGCTATTGGTCCGGCTTTGCTCCGGTCACGGATCCCCACAGGCCG
CCGTCAGCGCCACCGTACACAGCGACCGGACCTCAAAAAAAACTTTTTCGGTAATGAAAATATGG
GTAAGCTTCTTACTTTTATTTTTACTTTCGTATAAAAAAACAAAATAAAATTAAAAGGAAAACAA
TAAACAAACAAAGAACTTAAGATGAGAATAAACAAAAGAAAC
Found at i:97230010 original size:49 final size:49
Alignment explanation
Indices: 97229936--97230073 Score: 233
Period size: 49 Copynumber: 2.8 Consensus size: 49
97229926 TTTTGATTAA
*
97229936 TCTCCAAAAACTAGCCTTTCCAAAAAAAAAAAAAAC-CCTCAAACTCTTT
1 TCTCCAAAAACTGGCC-TTCCAAAAAAAAAAAAAACTCCTCAAACTCTTT
*
97229985 TCTCCAAAAACTGGCCTTCCAAAAAAAAAAAAACCTCCTCAAACTCTTT
1 TCTCCAAAAACTGGCCTTCCAAAAAAAAAAAAAACTCCTCAAACTCTTT
*
97230034 TCTCCAAAAACTGGCCTTCCAAAAAAAAAAAAACCTCCTC
1 TCTCCAAAAACTGGCCTTCCAAAAAAAAAAAAAACTCCTC
97230074 TACCATAGTC
Statistics
Matches: 86, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
48 18 0.21
49 68 0.79
ACGTcount: A:0.45, C:0.30, G:0.04, T:0.21
Consensus pattern (49 bp):
TCTCCAAAAACTGGCCTTCCAAAAAAAAAAAAAACTCCTCAAACTCTTT
Found at i:97230165 original size:22 final size:22
Alignment explanation
Indices: 97230131--97230182 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
97230121 TTTGTAGGCA
*
97230131 AGTGGAGTGGTTGG-GATGGTTT
1 AGTGGAGTAGTTGGAG-TGGTTT
*
97230153 AGTGGGGTAGTTGGAGTGGTTT
1 AGTGGAGTAGTTGGAGTGGTTT
97230175 AGTGGAGT
1 AGTGGAGT
97230183 GGTTTAGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (22 bp):
AGTGGAGTAGTTGGAGTGGTTT
Found at i:97230182 original size:13 final size:13
Alignment explanation
Indices: 97230164--97230192 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
97230154 GTGGGGTAGT
97230164 TGGAGTGGTTTAG
1 TGGAGTGGTTTAG
97230177 TGGAGTGGTTTAG
1 TGGAGTGGTTTAG
97230190 TGG
1 TGG
97230193 GGTGATTGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.48, T:0.38
Consensus pattern (13 bp):
TGGAGTGGTTTAG
Found at i:97231205 original size:20 final size:20
Alignment explanation
Indices: 97231177--97231221 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
97231167 TTTGGGAGTA
*
97231177 AGGGTGAAAAGTAAAAGTTT
1 AGGGGGAAAAGTAAAAGTTT
*
97231197 AGGGGGAAAATTAAAAGTTT
1 AGGGGGAAAAGTAAAAGTTT
*
97231217 TGGGG
1 AGGGG
97231222 AGTAAAAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24
Consensus pattern (20 bp):
AGGGGGAAAAGTAAAAGTTT
Found at i:97232885 original size:2 final size:2
Alignment explanation
Indices: 97232880--97232913 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
97232870 TTTTTTAAAC
97232880 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97232914 TGCTGTACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97237354 original size:5 final size:6
Alignment explanation
Indices: 97237340--97237373 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
97237330 AAATCCCAAA
97237340 TTTTCT TTTTCT TTTTCT TTCTTCCT TTTTCT TT
1 TTTTCT TTTTCT TTTTCT TT-TT-CT TTTTCT TT
97237374 ATTTCGTCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 18 0.69
7 4 0.15
8 4 0.15
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:97237678 original size:18 final size:18
Alignment explanation
Indices: 97237655--97237720 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
97237645 CCATTAAGCC
97237655 CCCCAAAAAAAAACCTAA
1 CCCCAAAAAAAAACCTAA
**
97237673 CCCCAAAAAAAAA-AGAA
1 CCCCAAAAAAAAACCTAA
***
97237690 -GAAAAAAGAAAAACCTAA
1 CCCCAAAA-AAAAACCTAA
97237708 CCCCAAAAAAAAA
1 CCCCAAAAAAAAA
97237721 AGAAAAAAGA
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
16 4 0.11
17 7 0.20
18 20 0.57
19 4 0.11
ACGTcount: A:0.68, C:0.24, G:0.05, T:0.03
Consensus pattern (18 bp):
CCCCAAAAAAAAACCTAA
Found at i:97237716 original size:32 final size:33
Alignment explanation
Indices: 97237659--97237740 Score: 132
Period size: 32 Copynumber: 2.5 Consensus size: 33
97237649 TAAGCCCCCC
97237659 AAAA-AAAAACCTAACCCCAAAAAAAAAAGAAGAA
1 AAAAGAAAAACCTAACCCC-AAAAAAAAA-AAGAA
97237693 AAAAGAAAAACCTAACCCC-AAAAAAAAAAGAA
1 AAAAGAAAAACCTAACCCCAAAAAAAAAAAGAA
97237725 AAAAGAAAAACCTAAC
1 AAAAGAAAAACCTAAC
97237741 AAAAAAAAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
32 21 0.45
33 8 0.17
34 4 0.09
35 14 0.30
ACGTcount: A:0.72, C:0.18, G:0.06, T:0.04
Consensus pattern (33 bp):
AAAAGAAAAACCTAACCCCAAAAAAAAAAAGAA
Found at i:97237744 original size:24 final size:23
Alignment explanation
Indices: 97237716--97237762 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 23
97237706 AACCCCAAAA
*
97237716 AAAAAAGAAAAAAGAAAAACCTAAC
1 AAAAAA-AAACAA-AAAAACCTAAC
97237741 AAAAAAAAACTAAAAAAACCTA
1 AAAAAAAAAC-AAAAAAACCTA
97237763 GCCACCTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.77, C:0.13, G:0.04, T:0.06
Consensus pattern (23 bp):
AAAAAAAAACAAAAAAACCTAAC
Found at i:97237748 original size:15 final size:13
Alignment explanation
Indices: 97237712--97237758 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
97237702 ACCTAACCCC
*
97237712 AAAAAAAAAA-GA
1 AAAAAAAAAACTA
97237724 AAAAAGAAAAACCTA
1 AAAAA-AAAAA-CTA
97237739 ACAAAAAAAAACTA
1 A-AAAAAAAAACTA
97237753 AAAAAA
1 AAAAAA
97237759 CCTAGCCACC
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 5 0.17
13 10 0.33
14 4 0.13
15 7 0.23
16 4 0.13
ACGTcount: A:0.83, C:0.09, G:0.04, T:0.04
Consensus pattern (13 bp):
AAAAAAAAAACTA
Found at i:97237805 original size:12 final size:12
Alignment explanation
Indices: 97237788--97237817 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
97237778 TCCCACTTGC
97237788 CCCATTTTTCCT
1 CCCATTTTTCCT
97237800 CCCATTTTTCCT
1 CCCATTTTTCCT
97237812 CCCATT
1 CCCATT
97237818 GTCTACCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
CCCATTTTTCCT
Found at i:97238556 original size:37 final size:37
Alignment explanation
Indices: 97238514--97238615 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
97238504 CTAATATTTT
97238514 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
97238551 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
97238594 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
97238616 CCAAATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:97240307 original size:12 final size:12
Alignment explanation
Indices: 97240287--97240322 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
97240277 ATTCATTTAA
97240287 CATTCATGCATT
1 CATTCATGCATT
*
97240299 CATTTATGCATT
1 CATTCATGCATT
*
97240311 CATTCATTCATT
1 CATTCATGCATT
97240323 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:97247442 original size:71 final size:71
Alignment explanation
Indices: 97247248--97247472 Score: 315
Period size: 72 Copynumber: 3.1 Consensus size: 71
97247238 GAGTTAAGCC
*
97247248 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
97247313 GAGGTAT
65 GAGGTAT
* * ** * * ** * *
97247320 TTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTT
1 TTTTAATTTTTGT-TTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
97247385 GAGGTAT
65 GAGGTAT
*
97247392 TTTTAATTGTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTG
97247457 AGGTAT
66 AGGTAT
*
97247463 TTTTAGTTTT
1 TTTTAATTTT
97247473 AAATTGACTC
Statistics
Matches: 128, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
71 58 0.45
72 70 0.55
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.40
Consensus pattern (71 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTG
AGGTAT
Found at i:97247549 original size:259 final size:259
Alignment explanation
Indices: 97247083--97247700 Score: 1094
Period size: 259 Copynumber: 2.4 Consensus size: 259
97247073 TCAAGGAAAA
*
97247083 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTC
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
*
97247148 TCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
66 TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
* *
97247213 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
131 TAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTGGTTTTTCAAAATCAACTCA
*
97247278 TATTGTTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
196 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
97247342 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
*
97247407 TCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
66 TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
*
97247472 TAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTTATTTTGGTTTTTCAAAATCAACTCA
131 TAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTGGTTTTTCAAAATCAACTCA
97247537 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
196 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
* * * * *
97247601 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATT-TTGTTT
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
*
97247665 GTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
66 -TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
97247701 ACCTTTTAAT
Statistics
Matches: 343, Mismatches: 14, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
258 6 0.02
259 309 0.90
260 28 0.08
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (259 bp):
TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
TAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTGGTTTTTCAAAATCAACTCA
TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
Found at i:97247629 original size:72 final size:72
Alignment explanation
Indices: 97247512--97247700 Score: 240
Period size: 72 Copynumber: 2.6 Consensus size: 72
97247502 AAGCCTTTTT
* * * * *
97247512 ATTTTGGTTTTTCAA-AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG
1 ATTTT-GTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
*
97247576 TATTTTCA
65 TAATTTCA
* **
97247584 ATTTTTGTGTT-TTAA-TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
1 A-TTTTGT-TTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
97247647 GTAATTTCA
64 GTAATTTCA
*
97247656 ATTTTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 ATTTTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGA
97247701 ACCTTTTAAT
Statistics
Matches: 101, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
70 2 0.02
71 9 0.09
72 84 0.83
73 6 0.06
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.35
Consensus pattern (72 bp):
ATTTTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
AATTTCA
Found at i:97247757 original size:198 final size:187
Alignment explanation
Indices: 97247342--97247794 Score: 539
Period size: 198 Copynumber: 2.4 Consensus size: 187
97247332 TGTTTTAATT
* * * * *
97247342 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTT
* * * *
97247407 TCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
66 TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTATTTTTAGTTT
** * **
97247472 TAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTTATTTTGGTTTTTCAAAA
131 TAAATCAACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAAAA
* * *
97247529 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGT-T
* **
97247594 TTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATT
65 TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT-A-TT---TT
* * *
97247659 TTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACTTTTTC
125 TAGTTT-T--A-AATCAACTCATACTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TACTTTTTC
97247723 AAAA
184 AAAA
* * * * *
97247727 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTT
97247792 TCA
66 TCA
97247795 TTATTATGTT
Statistics
Matches: 223, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
187 55 0.25
188 49 0.22
189 1 0.00
190 2 0.01
193 7 0.03
194 1 0.00
196 1 0.00
197 37 0.17
198 70 0.31
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (187 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTT
TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTATTTTTAGTTT
TAAATCAACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAAAA
Found at i:97247869 original size:87 final size:87
Alignment explanation
Indices: 97247723--97248133 Score: 452
Period size: 87 Copynumber: 4.8 Consensus size: 87
97247713 CTACTTTTTC
*
97247723 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCT
*
97247788 GTCTTCATTATTATGTTTTTGA
66 GTTTTCATTATTATGTTTTTGA
* *
97247810 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGCCGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCT
97247875 GTTTTCATTATTATGTTTTTGA
66 GTTTTCATTATTATGTTTTTGA
** *
97247897 AAGAATCAACTTGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATT
* * * **
97247962 TCCGTTTTTCAAT-TTCTGTCTTTCAAAAA
63 TCTG-TTTTCATTATTATGT-TTT---TGA
* ** * * * *
97247991 AAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCT
*
97248056 GTTTT--TCA--A--------A
66 GTTTTCATTATTATGTTTTTGA
* * *
97248066 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCT
97248131 GTT
66 GTT
97248134 GTCAAAAAAA
Statistics
Matches: 283, Mismatches: 32, Indels: 30
0.82 0.09 0.09
Matches are distributed among these distances:
75 63 0.22
87 87 0.31
88 34 0.12
90 33 0.12
91 32 0.11
93 31 0.11
94 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (87 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCT
GTTTTCATTATTATGTTTTTGA
Found at i:97247972 original size:14 final size:14
Alignment explanation
Indices: 97247953--97247987 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
97247943 CGCCGAGGTA
97247953 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
97247967 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
97247981 CTTTCAA
1 TTTTCAA
97247988 AAAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:97248044 original size:181 final size:175
Alignment explanation
Indices: 97247735--97248060 Score: 438
Period size: 181 Copynumber: 1.8 Consensus size: 175
97247725 AATCAGCTCA
* * *
97247735 TATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTCTTCATTATT
1 TATTGCGAGAGGCGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCCGTCTTCAATATT
** * ** * *
97247800 ATGTTTTTGAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGCCGAGGTATT
66 ATGTTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGCCGAGGTATT
97247865 TTCAATTTCTGTTTTCATTATTATGTTTTTGAAAGAATCAACTTG
131 TTCAATTTCTGTTTTCATTATTATGTTTTTGAAAGAATCAACTTG
*
97247910 TATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAAT
1 TATTGCGAGAGGCGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTTCCG-TCTTCAAT
* * * * *
97247975 -TTCTGTCTTTCAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTG
63 ATTATGT-TTT---AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGCCG
97248039 AGGTATTTTCAATTTCTGTTTT
124 AGGTATTTTCAATTTCTGTTTT
97248061 TCAAAAAAAT
Statistics
Matches: 128, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
175 28 0.22
177 29 0.23
178 9 0.07
181 62 0.48
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (175 bp):
TATTGCGAGAGGCGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCCGTCTTCAATATT
ATGTTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGCCGAGGTATT
TTCAATTTCTGTTTTCATTATTATGTTTTTGAAAGAATCAACTTG
Found at i:97248429 original size:79 final size:77
Alignment explanation
Indices: 97247967--97248578 Score: 610
Period size: 77 Copynumber: 7.7 Consensus size: 77
97247957 CAATTTCCGT
* * ** *
97247967 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG-
1 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
*
97248031 -ACATGCTGAGGTA
64 CACACGCTGAGGTA
97248044 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
97248107 CACGCTGAGGTA
66 CACGCTGAGGTA
* * * * *
97248119 ATTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
*
97248183 CACGCCGAGGTA
66 CACGCTGAGGTA
** *
97248195 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG
1 TTTTCAATTTCTGTTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* *
97248259 CTCACGCGCTGAGCTA
63 -TCACACGCTGAGGTA
* * * *
97248275 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
*
97248340 CACACTGAGGTA
66 CACGCTGAGGTA
* * * * * *
97248352 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
*
97248417 CACATG-TCGAGGTA
64 CACACGCT-GAGGTA
** * *
97248431 TTTTCAAAATCTGTTTTTTAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* ** *
97248496 GCCT-TGGTTCACGTGCTGAGCTA
55 GCCTCAGG-TCACACGCTGAGGTA
97248519 TTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTG---TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
97248579 TTTTTAATTT
Statistics
Matches: 450, Mismatches: 57, Indels: 52
0.81 0.10 0.09
Matches are distributed among these distances:
74 44 0.10
75 63 0.14
76 24 0.05
77 85 0.19
78 3 0.01
79 65 0.14
80 71 0.16
81 29 0.06
87 2 0.00
88 56 0.12
89 1 0.00
90 1 0.00
91 6 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
CACGCTGAGGTA
Found at i:97248521 original size:88 final size:88
Alignment explanation
Indices: 97248375--97248537 Score: 229
Period size: 88 Copynumber: 1.9 Consensus size: 88
97248365 TATTTTTCAA
* * *
97248375 AAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATGTCGAGCTATTTTCAAAA
97248440 TCTGTTTTTTAGATTCTGTTTTC
66 TCTGTTTTTTAGATTCTGTTTTC
* * * * *
97248463 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGTTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATGTC-GAGCTATTTTCAAA
*
97248527 TTCTGTTTTTT
65 ATCTGTTTTTT
97248538 TTCAAAAAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
87 1 0.02
88 64 0.98
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATGTCGAGCTATTTTCAAAA
TCTGTTTTTTAGATTCTGTTTTC
Found at i:97248596 original size:30 final size:30
Alignment explanation
Indices: 97248560--97248621 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
97248550 CAACTCATAT
97248560 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
97248590 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
97248620 TG
1 TG
97248622 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:97249363 original size:33 final size:33
Alignment explanation
Indices: 97249321--97249407 Score: 142
Period size: 35 Copynumber: 2.6 Consensus size: 33
97249311 GCCCCCCAAA
97249321 AAAAACCTAACCCAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAGAAGAAAAAAG
97249354 AAAAACCTAACCCCAAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAA-CCC-AAAAAAAAAGAAGAAAAAAG
97249389 AAAAACCTAA--CAAAAAAAA
1 AAAAACCTAACCCAAAAAAAA
97249408 CTAAAAAAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
31 8 0.15
32 1 0.02
33 10 0.19
34 3 0.06
35 30 0.58
ACGTcount: A:0.74, C:0.16, G:0.07, T:0.03
Consensus pattern (33 bp):
AAAAACCTAACCCAAAAAAAAAGAAGAAAAAAG
Found at i:97249463 original size:12 final size:12
Alignment explanation
Indices: 97249446--97249475 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
97249436 TCCCACTTGC
97249446 CCCATTTTTCCT
1 CCCATTTTTCCT
97249458 CCCATTTTTCCT
1 CCCATTTTTCCT
97249470 CCCATT
1 CCCATT
97249476 GTCTACCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
CCCATTTTTCCT
Found at i:97250142 original size:22 final size:20
Alignment explanation
Indices: 97250105--97250144 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
97250095 ACATATCATT
97250105 ATTTTATATTATTATTTTAA
1 ATTTTATATTATTATTTTAA
*
97250125 ATTTTTTATGTATATATTTT
1 ATTTTATAT-TAT-TATTTT
97250145 TTATGTACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 3 0.18
22 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
ATTTTATATTATTATTTTAA
Found at i:97254659 original size:27 final size:27
Alignment explanation
Indices: 97254611--97254715 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
97254601 GCGAGGCTGC
* *
97254611 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
97254638 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
97254664 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
97254691 CAGATAATCGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
97254716 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 8 0.11
27 59 0.84
28 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:97256357 original size:23 final size:23
Alignment explanation
Indices: 97256331--97256387 Score: 78
Period size: 26 Copynumber: 2.3 Consensus size: 23
97256321 ACATGAAATT
97256331 CCCATTATGGAACATTTACCTAA
1 CCCATTATGGAACATTTACCTAA
*
97256354 CCCATTATCATGGAACATTTATCTAA
1 CCCA-T-T-ATGGAACATTTACCTAA
97256380 CCCATTAT
1 CCCATTAT
97256388 CAATTTGTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 6 0.20
24 2 0.07
25 2 0.07
26 20 0.67
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.33
Consensus pattern (23 bp):
CCCATTATGGAACATTTACCTAA
Found at i:97256370 original size:26 final size:26
Alignment explanation
Indices: 97256337--97256389 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
97256327 AATTCCCATT
97256337 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
*
97256363 ATGGAACATTTATCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
97256389 A
1 A
97256390 ATTTGTATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.32
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:97257046 original size:13 final size:13
Alignment explanation
Indices: 97257028--97257052 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97257018 AACTGATCCA
97257028 AAAGACTTATAAC
1 AAAGACTTATAAC
97257041 AAAGACTTATAA
1 AAAGACTTATAA
97257053 AGATAGAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (13 bp):
AAAGACTTATAAC
Found at i:97259953 original size:18 final size:18
Alignment explanation
Indices: 97259884--97259956 Score: 94
Period size: 18 Copynumber: 4.1 Consensus size: 18
97259874 CATTTACGGC
97259884 ACTATTCACGTATAC-GAT
1 ACTATTCACGTATACAG-T
* *
97259902 ACTATTCATGTATACGGT
1 ACTATTCACGTATACAGT
*
97259920 ACTATTTACGTATACAGT
1 ACTATTCACGTATACAGT
*
97259938 ACTGTTCACGTATACAGT
1 ACTATTCACGTATACAGT
97259956 A
1 A
97259957 GTTGGGATTG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
18 47 0.98
19 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (18 bp):
ACTATTCACGTATACAGT
Found at i:97265830 original size:28 final size:27
Alignment explanation
Indices: 97265799--97265863 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 27
97265789 GATCATTAAG
97265799 AACAAAGCAAGATGAAC-ATACCACTCAC
1 AACAAAGCAAGA-G-ACTATACCACTCAC
*
97265827 AACAAAGC-A-AGACTATATCACTCAC
1 AACAAAGCAAGAGACTATACCACTCAC
97265852 AACAAAGCAAGA
1 AACAAAGCAAGA
97265864 CTTATGGCTC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
24 2 0.06
25 19 0.58
26 2 0.06
27 2 0.06
28 8 0.24
ACGTcount: A:0.52, C:0.26, G:0.11, T:0.11
Consensus pattern (27 bp):
AACAAAGCAAGAGACTATACCACTCAC
Found at i:97266897 original size:19 final size:20
Alignment explanation
Indices: 97266857--97266899 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
97266847 CCTTTTTATT
*
97266857 TAATTTATATCATTTTTAAA
1 TAATTTATATAATTTTTAAA
*
97266877 TAATTTCTATAATTTTT-AA
1 TAATTTATATAATTTTTAAA
97266896 TAAT
1 TAAT
97266900 CCATTTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (20 bp):
TAATTTATATAATTTTTAAA
Found at i:97266966 original size:17 final size:17
Alignment explanation
Indices: 97266946--97267003 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 17
97266936 TTTAATTAAG
97266946 ATAATATAAAAATTATA
1 ATAATATAAAAATTATA
*
97266963 ATAAATTAATATAAATTA-A
1 AT-AA-T-ATAAAAATTATA
97266982 GATAATATAAAAATTATA
1 -ATAATATAAAAATTATA
97267000 ATAA
1 ATAA
97267004 ATTAATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
17 15 0.44
18 4 0.12
19 4 0.12
20 11 0.32
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
ATAATATAAAAATTATA
Found at i:97266970 original size:10 final size:10
Alignment explanation
Indices: 97266950--97267007 Score: 56
Period size: 10 Copynumber: 6.2 Consensus size: 10
97266940 ATTAAGATAA
97266950 TATAA-AAAT
1 TATAATAAAT
97266959 TATAATAAAT
1 TATAATAAAT
97266969 TA-ATATAAAT
1 TATA-ATAAAT
97266979 TA-AGAT-AA-
1 TATA-ATAAAT
97266987 TATAA-AAAT
1 TATAATAAAT
97266996 TATAATAAAT
1 TATAATAAAT
97267006 TA
1 TA
97267008 ATATAAGTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
8 5 0.12
9 14 0.33
10 23 0.55
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (10 bp):
TATAATAAAT
Found at i:97266980 original size:37 final size:37
Alignment explanation
Indices: 97266939--97267013 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
97266929 ATATAATTTT
97266939 AATTAAGATAATATAAAAATTATAATAAATTAATATA
1 AATTAAGATAATATAAAAATTATAATAAATTAATATA
97266976 AATTAAGATAATATAAAAATTATAATAAATTAATATA
1 AATTAAGATAATATAAAAATTATAATAAATTAATATA
97267013 A
1 A
97267014 GTTTTACACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (37 bp):
AATTAAGATAATATAAAAATTATAATAAATTAATATA
Found at i:97274693 original size:31 final size:31
Alignment explanation
Indices: 97274658--97274721 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
97274648 AATTTTTTCT
97274658 TTTAATATTCTTTAAAAGTTGGAATAATTCA
1 TTTAATATTCTTTAAAAGTTGGAATAATTCA
*
97274689 TTTAATATTCTTTAAAAGTTGGAATCATTCA
1 TTTAATATTCTTTAAAAGTTGGAATAATTCA
97274720 TT
1 TT
97274722 CTGAAAAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.47
Consensus pattern (31 bp):
TTTAATATTCTTTAAAAGTTGGAATAATTCA
Found at i:97290738 original size:20 final size:20
Alignment explanation
Indices: 97290708--97290752 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
97290698 CTGTTTTATG
97290708 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
97290727 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
97290747 ATGGGC
1 ATGGGC
97290753 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:97290875 original size:28 final size:27
Alignment explanation
Indices: 97290781--97290887 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
97290771 ACTTGTAATA
* * *
97290781 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
*
97290809 GGGCTAGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAGGCCCAG-A---T-TAATATTGAT-AT
97290841 AGGGCTATGGCCCAGATTAATATTGATAT
1 -GGGCTA-GGCCCAGATTAATATTGATAT
97290870 GGGCTAAGGCCCAG-TTAA
1 GGGCT-AGGCCCAGATTAA
97290888 CACTAAATTC
Statistics
Matches: 66, Mismatches: 3, Indels: 21
0.73 0.03 0.23
Matches are distributed among these distances:
27 11 0.17
28 19 0.29
29 10 0.15
30 2 0.03
31 1 0.02
32 9 0.14
33 7 0.11
34 7 0.11
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATATTGATAT
Found at i:97290915 original size:62 final size:61
Alignment explanation
Indices: 97290776--97290917 Score: 155
Period size: 61 Copynumber: 2.3 Consensus size: 61
97290766 TCTCGACTTG
* * * * *
97290776 TAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATATTG
1 TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
* * *
97290837 TAATAGGGCTATGGCCCAGATTAATATTGATATGGGCTAAGGCCCAGT-TAACACT-AAATTC
1 TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGAAATTC
97290898 TGAATAGGGCTTA-GGCCCAG
1 T-AATAGGGC-TACGGCCCAG
97290918 TAAAGCTTGA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
61 40 0.58
62 27 0.39
63 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (61 bp):
TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
Found at i:97295221 original size:44 final size:44
Alignment explanation
Indices: 97295171--97295260 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
97295161 GTTTGAGTTT
97295171 TAATATAACAAACACAATCTAAATGTTAAAATGCTCCATTATCG
1 TAATATAACAAACACAATCTAAATGTTAAAATGCTCCATTATCG
* *
97295215 TAATATAACAAACACAATGTATATGTTAAAATGCTCCATTATCG
1 TAATATAACAAACACAATCTAAATGTTAAAATGCTCCATTATCG
97295259 TA
1 TA
97295261 TCTTAATTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (44 bp):
TAATATAACAAACACAATCTAAATGTTAAAATGCTCCATTATCG
Found at i:97295418 original size:26 final size:26
Alignment explanation
Indices: 97295389--97295441 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
97295379 CAAATGATAG
*
97295389 TGATGTGTTATGATTAATTAATAATA
1 TGATGTATTATGATTAATTAATAATA
97295415 TGATGTATTATGATTAATTAATAATA
1 TGATGTATTATGATTAATTAATAATA
97295441 T
1 T
97295442 ATCAAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (26 bp):
TGATGTATTATGATTAATTAATAATA
Found at i:97300422 original size:11 final size:11
Alignment explanation
Indices: 97300406--97300440 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
97300396 AATTTTTCCC
97300406 TTAAACCTATT
1 TTAAACCTATT
97300417 TTAAACCTATT
1 TTAAACCTATT
97300428 TTAAACCTATT
1 TTAAACCTATT
97300439 TT
1 TT
97300441 TCGTTGCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (11 bp):
TTAAACCTATT
Found at i:97301172 original size:9 final size:9
Alignment explanation
Indices: 97301158--97301197 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
97301148 TAAACTTTTG
97301158 TAATTTAAA
1 TAATTTAAA
97301167 TAATTTAAA
1 TAATTTAAA
**
97301176 TAATTCGAA
1 TAATTTAAA
*
97301185 TATTTTAAA
1 TAATTTAAA
97301194 TAAT
1 TAAT
97301198 AGATTAATGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (9 bp):
TAATTTAAA
Found at i:97301668 original size:16 final size:16
Alignment explanation
Indices: 97301647--97301679 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
97301637 ACATTGTACA
97301647 TTATGAATTTAATTTT
1 TTATGAATTTAATTTT
97301663 TTATGAATTTAATTTT
1 TTATGAATTTAATTTT
97301679 T
1 T
97301680 CTATTCCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (16 bp):
TTATGAATTTAATTTT
Found at i:97303088 original size:22 final size:23
Alignment explanation
Indices: 97303063--97303105 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
97303053 AAATTTTAAA
97303063 AAATT-AAGAACAAAAATTAATT
1 AAATTAAAGAACAAAAATTAATT
* *
97303085 AAATTAAAGAATAAAAGTTAA
1 AAATTAAAGAACAAAAATTAA
97303106 ATACACAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (23 bp):
AAATTAAAGAACAAAAATTAATT
Found at i:97311845 original size:12 final size:12
Alignment explanation
Indices: 97311828--97311875 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
97311818 TGGGAGTAAA
97311828 GTTTTATATTTG
1 GTTTTATATTTG
*
97311840 GTTTTATATGTTAAA
1 GTTTTATAT-TT--G
97311855 GTTTTATATTTG
1 GTTTTATATTTG
97311867 GTTTTATAT
1 GTTTTATAT
97311876 GTTAATGACA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 18 0.58
13 2 0.06
14 2 0.06
15 9 0.29
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (12 bp):
GTTTTATATTTG
Found at i:97311858 original size:27 final size:27
Alignment explanation
Indices: 97311824--97311880 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
97311814 TTAGTGGGAG
97311824 TAAAGTTTTATATTTGGTTTTATATGT
1 TAAAGTTTTATATTTGGTTTTATATGT
97311851 TAAAGTTTTATATTTGGTTTTATATGT
1 TAAAGTTTTATATTTGGTTTTATATGT
97311878 TAA
1 TAA
97311881 TGACATACTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (27 bp):
TAAAGTTTTATATTTGGTTTTATATGT
Found at i:97314598 original size:23 final size:23
Alignment explanation
Indices: 97314566--97314625 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
97314556 AAATTAGTCT
* *
97314566 TATATTTATTCTTATTTATT-TTA
1 TATATATATT-TTATATATTGTTA
97314589 TATATATATTTTATATATTGTTA
1 TATATATATTTTATATATTGTTA
*
97314612 TTTATATTATTTTA
1 TATATA-TATTTTA
97314626 ACCTTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.25
23 17 0.53
24 7 0.22
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (23 bp):
TATATATATTTTATATATTGTTA
Found at i:97314600 original size:13 final size:13
Alignment explanation
Indices: 97314582--97314606 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97314572 TATTCTTATT
97314582 TATTTTATATATA
1 TATTTTATATATA
97314595 TATTTTATATAT
1 TATTTTATATAT
97314607 TGTTATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTATATATA
Found at i:97314660 original size:25 final size:24
Alignment explanation
Indices: 97314581--97314662 Score: 62
Period size: 25 Copynumber: 3.4 Consensus size: 24
97314571 TTATTCTTAT
* *
97314581 TTATTTTATA-TATATATTTTATA
1 TTATTTTATATTATATATTTAAAA
**
97314604 -TATTGTTAT-TTATATTATTTTAACC
1 TTATT-TTATATTATA-TA-TTTAAAA
*
97314629 TTTTTTTATATTATATATTATAAAA
1 TTATTTTATATTATATATT-TAAAA
97314654 TTATTTTAT
1 TTATTTTAT
97314663 TATGAGTATT
Statistics
Matches: 45, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
22 4 0.09
23 8 0.18
24 4 0.09
25 21 0.47
26 8 0.18
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.63
Consensus pattern (24 bp):
TTATTTTATATTATATATTTAAAA
Found at i:97314680 original size:18 final size:16
Alignment explanation
Indices: 97314653--97314733 Score: 51
Period size: 17 Copynumber: 4.8 Consensus size: 16
97314643 ATATTATAAA
97314653 ATTA-TTTTATTATGAGT
1 ATTATTTTTATTAT-A-T
97314670 ATTATTTTTATCATATACATT
1 ATTATTTTTAT--TAT--A-T
97314691 ATTATTATTTATTATAT
1 ATTATT-TTTATTATAT
*
97314708 ATTATTTTTCTTA-A-
1 ATTATTTTTATTATAT
*
97314722 ATTATTATTATT
1 ATTATTTTTATT
97314734 TTACATCTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
14 10 0.19
15 1 0.02
16 6 0.11
17 11 0.20
18 7 0.13
20 6 0.11
21 8 0.15
22 5 0.09
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (16 bp):
ATTATTTTTATTATAT
Found at i:97314712 original size:17 final size:18
Alignment explanation
Indices: 97314688--97314734 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
97314678 TATCATATAC
*
97314688 ATTATTATTATTTATTAT
1 ATTATTATTATTTATTAA
*
97314706 A-TATTATT-TTTCTTAA
1 ATTATTATTATTTATTAA
97314722 ATTATTATTATTT
1 ATTATTATTATTT
97314735 TACATCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 7 0.28
17 14 0.56
18 4 0.16
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTATTATTATTTATTAA
Found at i:97315203 original size:26 final size:26
Alignment explanation
Indices: 97315139--97315194 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
97315129 TAGGACATGG
97315139 AAGGAATTTTTGGAAAGTTTAGTAGT
1 AAGGAATTTTTGGAAAGTTTAGTAGT
97315165 AAGGAATTTTTGGAAAGTTTAGTAGT
1 AAGGAATTTTTGGAAAGTTTAGTAGT
97315191 AAGG
1 AAGG
97315195 GCATTTTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.00, G:0.29, T:0.36
Consensus pattern (26 bp):
AAGGAATTTTTGGAAAGTTTAGTAGT
Found at i:97315748 original size:25 final size:25
Alignment explanation
Indices: 97315697--97315764 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 25
97315687 TATATGTTTA
*
97315697 TATTATATTTTA-TTATATACTATT
1 TATTATATTTTATTTATATACTACT
* * *
97315721 TATTATGTTTTATTTTTATATTACT
1 TATTATATTTTATTTATATACTACT
* * *
97315746 TATTGTTTTTTATATATAT
1 TATTATATTTTATTTATAT
97315765 GTTATGTATA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
24 11 0.31
25 24 0.69
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (25 bp):
TATTATATTTTATTTATATACTACT
Found at i:97318744 original size:128 final size:128
Alignment explanation
Indices: 97318512--97318780 Score: 421
Period size: 128 Copynumber: 2.1 Consensus size: 128
97318502 GTAGGGGTCT
* * * * * * * *
97318512 ACATGCCTGTGTGGATGAGACCCACTCCCGTGTGACCGAGTTACATGGTCGTGTGAGTAGCTTGT
1 ACATGCCTGTGTGAAGGAGACACACTCCCATATGACCGAGTTACATGATCGTATGAGTAGCTCGT
* *
97318577 GTAACTCTCTATCCAAAATTGTTAAAATAAGGTGCAGAGTAGACACGGTCGTGTTAAAATCTC
66 GTAACTCTCTATCCAAAATTGTTAAAATAAGGTGCAGAGTAGACACGATCGTGTGAAAATCTC
97318640 ACATGCCTGTGTGAAGGAGACACACTCCCATATGACCGAGTTACATGATCGTATGAGTAGCTCGT
1 ACATGCCTGTGTGAAGGAGACACACTCCCATATGACCGAGTTACATGATCGTATGAGTAGCTCGT
* * *
97318705 GTAACTCTTTGTCCAAAATTGTTAAAATAAGGTGTAGAGTAGACACGATCGTGTGAAAATCTC
66 GTAACTCTCTATCCAAAATTGTTAAAATAAGGTGCAGAGTAGACACGATCGTGTGAAAATCTC
97318768 ACATGCCTGTGTG
1 ACATGCCTGTGTG
97318781 GTTAAGGGAC
Statistics
Matches: 128, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
128 128 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (128 bp):
ACATGCCTGTGTGAAGGAGACACACTCCCATATGACCGAGTTACATGATCGTATGAGTAGCTCGT
GTAACTCTCTATCCAAAATTGTTAAAATAAGGTGCAGAGTAGACACGATCGTGTGAAAATCTC
Found at i:97324771 original size:20 final size:20
Alignment explanation
Indices: 97324746--97324783 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97324736 AGACAAGCGA
* *
97324746 TACTCCACAGCAGGTGGATG
1 TACTCCAAAACAGGTGGATG
97324766 TACTCCAAAACAGGTGGA
1 TACTCCAAAACAGGTGGA
97324784 GTTTGAGCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (20 bp):
TACTCCAAAACAGGTGGATG
Found at i:97329264 original size:14 final size:14
Alignment explanation
Indices: 97329226--97329269 Score: 56
Period size: 13 Copynumber: 3.2 Consensus size: 14
97329216 CAAAATGTAC
97329226 AATATAATTAAA-T
1 AATATAATTAAATT
97329239 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
97329254 AA-ATAATTTAATT
1 AATATAATTAAATT
97329267 AAT
1 AAT
97329270 TGTTTACTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:97330301 original size:29 final size:30
Alignment explanation
Indices: 97330269--97330325 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
97330259 ATTTGCAATT
* *
97330269 AAATCTTTCATGCTTTT-AATTTGGCCCTG
1 AAATCTTTCACGCTTTTCAATTTAGCCCTG
* *
97330298 AAATTTTTCACGGTTTTCAATTTAGCCC
1 AAATCTTTCACGCTTTTCAATTTAGCCC
97330326 CTGTGCATAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 14 0.61
30 9 0.39
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (30 bp):
AAATCTTTCACGCTTTTCAATTTAGCCCTG
Found at i:97330681 original size:22 final size:23
Alignment explanation
Indices: 97330655--97330710 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
97330645 TATGTTGTTA
97330655 CTTTATTATTTTA-TTTTAATAT
1 CTTTATTATTTTACTTTTAATAT
*
97330677 CTTTATTATATTTACTTTTTATAT
1 CTTTATTAT-TTTACTTTTAATAT
*
97330701 -TTTAATATTT
1 CTTTATTATTT
97330711 ATTATCATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 11 0.37
23 11 0.37
24 8 0.27
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (23 bp):
CTTTATTATTTTACTTTTAATAT
Found at i:97330757 original size:17 final size:19
Alignment explanation
Indices: 97330735--97330771 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
97330725 TATATATTAG
97330735 TGTATA-ATTTTT-ATATA
1 TGTATATATTTTTAATATA
*
97330752 TGTATATGTTTTTAATATA
1 TGTATATATTTTTAATATA
97330771 T
1 T
97330772 TATGTACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 5 0.29
19 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.59
Consensus pattern (19 bp):
TGTATATATTTTTAATATA
Found at i:97330885 original size:29 final size:29
Alignment explanation
Indices: 97330817--97330891 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 29
97330807 TTTTATTCCT
*
97330817 TATAT-TTATGTATTATGTAAATATTTTAA
1 TATATATTATGTA-TATCTAAATATTTTAA
* **
97330846 TATTATATTATGTATATCTATATATTTTCG
1 TA-TATATTATGTATATCTAAATATTTTAA
97330876 TATATATTATGTATAT
1 TATATATTATGTATAT
97330892 ATGTTTTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
29 16 0.40
30 17 0.43
31 7 0.17
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.56
Consensus pattern (29 bp):
TATATATTATGTATATCTAAATATTTTAA
Found at i:97331092 original size:9 final size:9
Alignment explanation
Indices: 97331078--97331107 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
97331068 CCATTTCTAA
97331078 TATATATAT
1 TATATATAT
97331087 TATATATAT
1 TATATATAT
*
97331096 TTTATATAT
1 TATATATAT
97331105 TAT
1 TAT
97331108 GTATGTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TATATATAT
Found at i:97334168 original size:32 final size:32
Alignment explanation
Indices: 97334079--97334171 Score: 159
Period size: 32 Copynumber: 2.9 Consensus size: 32
97334069 TGCATTTTAG
* *
97334079 CATTTTAATAGTTAATGGATGATGGACATTAG
1 CATTTTAATAGTTAATGGATGATGGGCATTAA
*
97334111 CATTTTAATAGTTAATGAATGATGGGCATTAA
1 CATTTTAATAGTTAATGGATGATGGGCATTAA
97334143 CATTTTAATAGTTAATGGATGATGGGCAT
1 CATTTTAATAGTTAATGGATGATGGGCAT
97334172 GATAAGCATT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 57 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (32 bp):
CATTTTAATAGTTAATGGATGATGGGCATTAA
Found at i:97335684 original size:26 final size:26
Alignment explanation
Indices: 97335655--97335707 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
97335645 TTTACAGTTT
97335655 TACCCCTAGGAGGTAAATT-ACCGAAA
1 TACCCCTAGG-GGTAAATTGACCGAAA
* *
97335681 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGGTAAATTGACCGAAA
97335707 T
1 T
97335708 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGGTAAATTGACCGAAA
Found at i:97335945 original size:21 final size:21
Alignment explanation
Indices: 97335902--97335948 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
97335892 TCCCCACATG
97335902 GAGTGTATGGCTGGTAGGGGTT
1 GAGTGTATGGCTGGTA-GGGTT
*
97335924 GAGTGTAGTGGTTGGT-GGGTT
1 GAGTGTA-TGGCTGGTAGGGTT
97335945 GAGT
1 GAGT
97335949 AGTCTCCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 7 0.30
23 7 0.30
ACGTcount: A:0.13, C:0.02, G:0.51, T:0.34
Consensus pattern (21 bp):
GAGTGTATGGCTGGTAGGGTT
Found at i:97344018 original size:39 final size:39
Alignment explanation
Indices: 97343964--97344165 Score: 359
Period size: 39 Copynumber: 5.2 Consensus size: 39
97343954 TGTGTATGAA
97343964 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
97344003 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
97344042 TGTGCGAGTTGTGATATCCGGGTTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
97344081 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
97344120 TGTGCGAGTTGTGTTATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
97344160 TGTGCG
1 TGTGCG
97344166 GGTTACCATG
Statistics
Matches: 157, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 140 0.89
40 17 0.11
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:97352068 original size:39 final size:39
Alignment explanation
Indices: 97352014--97352215 Score: 359
Period size: 39 Copynumber: 5.2 Consensus size: 39
97352004 TGTGTATGAA
97352014 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
97352053 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
97352092 TGTGCGAGTTGTGATATCCGGGTTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
97352131 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
97352170 TGTGCGAGTTGTGTTATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
97352210 TGTGCG
1 TGTGCG
97352216 GGTTACCATG
Statistics
Matches: 157, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 140 0.89
40 17 0.11
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:97354132 original size:86 final size:82
Alignment explanation
Indices: 97354038--97354432 Score: 485
Period size: 86 Copynumber: 4.9 Consensus size: 82
97354028 TTATTTCTGC
*
97354038 TTTCAAAAAAATCAACACATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
97354103 AATTTCCGTTTTCAATTTAT
66 AATTTCCGTTTT---TTTAT
* *
97354123 GTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTT
1 -TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
* *
97354188 CAATTT-C-TGTTTTTCT
65 CAATTTCCGTTTTTTTAT
*
97354204 TTTC--AAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
97354267 AATTT-C----TGTT-T
66 AATTTCCGTTTTTTTAT
* *
97354278 TTT---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* *
97354340 AATCTCTGCTTTTCAACTTATATT
66 AATTTCCG-TTTT----TT-TA-T
*
97354364 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
97354428 AATTT
66 AATTT
97354433 ATGCTTTTCA
Statistics
Matches: 277, Mismatches: 17, Indels: 28
0.86 0.05 0.09
Matches are distributed among these distances:
73 60 0.22
74 4 0.01
75 3 0.01
78 62 0.22
79 1 0.00
80 4 0.01
81 4 0.01
83 1 0.00
84 4 0.01
85 1 0.00
86 71 0.26
88 62 0.22
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (82 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
AATTTCCGTTTTTTTAT
Found at i:97354327 original size:73 final size:73
Alignment explanation
Indices: 97354111--97354352 Score: 340
Period size: 73 Copynumber: 3.2 Consensus size: 73
97354101 TCAATTTCCG
* *** * *
97354111 TTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATG
1 TTTTCAATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
97354176 CTGAGGTA
66 CTGAGGTA
*
97354184 TTTTCAATTTCTGTTTTTCTTTTCAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGG
1 TTTTCAATTTCTG---TT-TTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
97354249 ACACGCTGAGGTA
61 ACACGCTGAGGTA
* *
97354262 TTTTCAATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTTCAATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
97354327 CTGAGGTA
66 CTGAGGTA
* *
97354335 TTTTCAATCTCTGCTTTT
1 TTTTCAATTTCTGTTTTT
97354353 CAACTTATAT
Statistics
Matches: 152, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
73 79 0.52
74 4 0.03
75 2 0.01
76 2 0.01
77 1 0.01
78 64 0.42
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTA
Found at i:97354414 original size:161 final size:160
Alignment explanation
Indices: 97354111--97354601 Score: 554
Period size: 161 Copynumber: 3.1 Consensus size: 160
97354101 TCAATTTCCG
* *** * * * *
97354111 TTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA-T
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGCACA
* ** *
97354175 GCT-GAGGTATTTTCAATTTCTG--TTT----TT-CTTTTCAAAAATCAACTCATATTGCGAGAG
66 GATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAATTTTCAAAAATCAACTCATATTGCGAGAG
* *
97354232 CTGAGTTGAGCCTCAGGACACGCTGAGGTA
131 GTGAGTTGAGCCTCGGGACACGCTGAGGTA
* *
97354262 TTTTCAATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC-
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGCACA
* ** *
97354326 GCT-GAGGTATTTTCAATCTCTGCTTTTCAACTTATATTTTTCAAAAAATCAACTCATATTGCGA
66 GATCGAGGTATTTTCAAAATCTGCTTTTCAAATTA-A-TTTTC-AAAAATCAACTCATATTGCGA
97354390 GAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
128 GAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
* * *
97354423 TTTTCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACA
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGCACA
* * * *
97354488 TATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAATTTCAAAAACCAACTCATATTGCGAGAA
66 GATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAATTTTCAAAAATCAACTCATATTGCGAGAG
* * ** * *
97354553 GTGAGTTAAGCCTTGGCTCACGTGTTGAGCTA
131 GTGAGTTGAGCCTCGGGACAC--GCTGAGGTA
*
97354585 TTCTCAATTTCTGTTTT
1 TTTTCAATTTCTGTTTT
97354602 AATGTCTGTT
Statistics
Matches: 293, Mismatches: 32, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
151 78 0.27
153 3 0.01
157 2 0.01
160 44 0.15
161 115 0.39
162 23 0.08
163 28 0.10
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (160 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGCACA
GATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAATTTTCAAAAATCAACTCATATTGCGAGAG
GTGAGTTGAGCCTCGGGACACGCTGAGGTA
Found at i:97354415 original size:88 final size:88
Alignment explanation
Indices: 97354281--97354443 Score: 299
Period size: 88 Copynumber: 1.9 Consensus size: 88
97354271 TCTGTTTTTT
* *
97354281 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATCTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATCTA
97354346 TGCTTTTCAACTTATATTTTTCA
66 TGCTTTTCAACTTATATTTTTCA
*
97354369 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATCTA
97354434 TGCTTTTCAA
66 TGCTTTTCAA
97354444 AAATCAACTC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 72 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (88 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATCTA
TGCTTTTCAACTTATATTTTTCA
Found at i:97354469 original size:73 final size:75
Alignment explanation
Indices: 97354349--97354519 Score: 229
Period size: 73 Copynumber: 2.3 Consensus size: 75
97354339 CAATCTCTGC
* ** *
97354349 TTTTCAACTTATATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTTCAAATTATGCTTTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACAC
*
97354414 -GCT-GAGGTA
65 AGATCGAGGTA
* *
97354423 TTTTCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACA
1 TTTTCAAATTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACA
*
97354488 TATCGAGGTA
66 GATCGAGGTA
* *
97354498 TTTTCAAAATCTGCTTTTCAAA
1 TTTTCAAATTATGCTTTTCAAA
97354520 TTAAATTTCA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
73 43 0.51
74 17 0.20
75 25 0.29
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (75 bp):
TTTTCAAATTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACA
GATCGAGGTA
Found at i:97356062 original size:29 final size:30
Alignment explanation
Indices: 97356030--97356086 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
97356020 ATTTGCAATT
* *
97356030 AAATCTTTCATGCTTTT-AATTTGGCCCTG
1 AAATCTTTCACGCTTTTCAATTTAGCCCTG
* *
97356059 AAATTTTTCACGGTTTTCAATTTAGCCC
1 AAATCTTTCACGCTTTTCAATTTAGCCC
97356087 CCGTGCATAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 14 0.61
30 9 0.39
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (30 bp):
AAATCTTTCACGCTTTTCAATTTAGCCCTG
Found at i:97358142 original size:25 final size:23
Alignment explanation
Indices: 97358091--97358146 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 23
97358081 AATCCATGTT
97358091 CATAATAT-ATATAAAACATATA
1 CATAATATAATATAAAACATATA
* *
97358113 TATAATATAATATTAAAACATTTTA
1 CATAATATAATA-TAAAACA-TATA
97358138 CATAATATA
1 CATAATATA
97358147 TACACATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.25
23 3 0.11
24 7 0.25
25 11 0.39
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (23 bp):
CATAATATAATATAAAACATATA
Found at i:97358369 original size:3 final size:3
Alignment explanation
Indices: 97358363--97358409 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
97358353 TACATACTAC
97358363 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
97358410 TGAAAATAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:97368877 original size:13 final size:15
Alignment explanation
Indices: 97368843--97368893 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
97368833 TGAAAATGAT
97368843 ATAATAAGTATAATAA
1 ATAAT-AGTATAATAA
*
97368859 ATAATAGTGTAA-AA
1 ATAATAGTATAATAA
97368873 A-AATAGTATAATAA
1 ATAATAGTATAATAA
97368887 ATAATAG
1 ATAATAG
97368894 GAAAATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 9 0.29
14 6 0.19
15 11 0.35
16 5 0.16
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (15 bp):
ATAATAGTATAATAA
Found at i:97370703 original size:76 final size:76
Alignment explanation
Indices: 97370501--97370704 Score: 227
Period size: 76 Copynumber: 2.6 Consensus size: 76
97370491 TATGGAATTG
* * *
97370501 GGAAAAAAGTTAGGGATTTCGGGGAAGGGGAGAGCTGATTTGGGGAAAATAAAATGGGGAAAAAA
1 GGAAAAAA-TTAGGGATTTCGGGG-AGGGG-GAACTAATTTGGGGAAAATGAAATGGGGAAAAAA
*
97370566 AGAAAGAGATTTTA
63 AGAAAGAGATTCTA
* * *
97370580 GGAAAAAATTAGGGATTTCGGGGAGGGGGAACTGATTTTGGGG-AAATGAATTGGGG-AAAAAGG
1 GGAAAAAATTAGGGATTTCGGGGAGGGGGAACT-AATTTGGGGAAAATGAAATGGGGAAAAAAAG
* *
97370643 GAAG-GGTTCT-
65 AAAGAGATTCTA
*
97370653 GGAAAAAATACTTAGGGATTTTGGGGAGGGGGAACTAATTTGGGGAAAATGA
1 GG-AAAAA-A-TTAGGGATTTCGGGGAGGGGGAACTAATTTGGGGAAAATGA
97370705 CTAAGGCATT
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
73 2 0.02
74 9 0.08
75 18 0.17
76 45 0.41
77 12 0.11
78 15 0.14
79 8 0.07
ACGTcount: A:0.38, C:0.03, G:0.38, T:0.21
Consensus pattern (76 bp):
GGAAAAAATTAGGGATTTCGGGGAGGGGGAACTAATTTGGGGAAAATGAAATGGGGAAAAAAAGA
AAGAGATTCTA
Found at i:97372234 original size:22 final size:21
Alignment explanation
Indices: 97372209--97372249 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
97372199 AATATAGTTT
*
97372209 TGAAAACACTAATTTTGATCAA
1 TGAAAAAACT-ATTTTGATCAA
*
97372231 TGAAAAAACTTTTTTGATC
1 TGAAAAAACTATTTTGATC
97372250 CTATCAAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (21 bp):
TGAAAAAACTATTTTGATCAA
Found at i:97372658 original size:29 final size:30
Alignment explanation
Indices: 97372614--97372699 Score: 93
Period size: 31 Copynumber: 2.9 Consensus size: 30
97372604 ATTTAATGTT
97372614 CAATTGTATACATG-AACTTTAATTTGGTG
1 CAATTGTATACATGAAACTTTAATTTGGTG
* * * *
97372643 CAATTATATACGTGAAACTCTAATTATGGTT
1 CAATTGTATACATGAAACTTTAATT-TGGTG
* * *
97372674 CAAATGTATACTTGAAATTTTAATTT
1 CAATTGTATACATGAAACTTTAATTT
97372700 TGATTTAATC
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
29 12 0.26
30 10 0.22
31 24 0.52
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (30 bp):
CAATTGTATACATGAAACTTTAATTTGGTG
Found at i:97373477 original size:21 final size:20
Alignment explanation
Indices: 97373453--97373500 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
97373443 TTATGCCACA
97373453 TCAGTACTCTTATCCTGAATT
1 TCAGTA-TCTTATCCTGAATT
* *
97373474 TCAGGATTTTATCCTGAATT
1 TCAGTATCTTATCCTGAATT
*
97373494 TTAGTAT
1 TCAGTAT
97373501 TTTAATTTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (20 bp):
TCAGTATCTTATCCTGAATT
Found at i:97373487 original size:20 final size:20
Alignment explanation
Indices: 97373462--97373504 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
97373452 ATCAGTACTC
97373462 TTATCCTGAATTTCAGGATT
1 TTATCCTGAATTTCAGGATT
* *
97373482 TTATCCTGAATTTTAGTATT
1 TTATCCTGAATTTCAGGATT
97373502 TTA
1 TTA
97373505 ATTTGGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.51
Consensus pattern (20 bp):
TTATCCTGAATTTCAGGATT
Found at i:97377452 original size:24 final size:25
Alignment explanation
Indices: 97377419--97377474 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
97377409 GGTTTTTTAG
*
97377419 TTTTTTTTTGGGGGTTAGGTTTTTC
1 TTTTTTTTGGGGGGTTAGGTTTTTC
97377444 TTTTTTTTGGGGGGTTAGGTTTTTC
1 TTTTTTTTGGGGGGTTAGGTTTTTC
97377469 TTTTTT
1 TTTTTT
97377475 CTTTTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.04, C:0.04, G:0.27, T:0.66
Consensus pattern (25 bp):
TTTTTTTTGGGGGGTTAGGTTTTTC
Found at i:97377491 original size:32 final size:33
Alignment explanation
Indices: 97377438--97377500 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
97377428 GGGGGTTAGG
97377438 TTTTTCTTTTTTTTGGGGGGTTA-GGTTTTTCT
1 TTTTTCTTTTTTTTGGGGGGTTAGGGTTTTTCT
***
97377470 TTTTTCTTTTTTTTTTTGGGTTAGGGTTTTT
1 TTTTTCTTTTTTTTGGGGGGTTAGGGTTTTT
97377501 TTTGGAAGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 20 0.74
33 7 0.26
ACGTcount: A:0.03, C:0.05, G:0.22, T:0.70
Consensus pattern (33 bp):
TTTTTCTTTTTTTTGGGGGGTTAGGGTTTTTCT
Found at i:97381776 original size:2 final size:2
Alignment explanation
Indices: 97381771--97381795 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97381761 TTTTGGTGTG
97381771 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
97381796 CTTAATCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97383196 original size:46 final size:45
Alignment explanation
Indices: 97383129--97383221 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 45
97383119 TTTACACCCA
97383129 ACCCAACCAGAATTTGCAAAAATCTCCAAACCATTCTCAATTGCCC
1 ACCCAACCAGAATTTGCAAAAATCTCCAAACC-TTCTCAATTGCCC
97383175 ACCCAACCAGAATTTGCAAAAATCTCCAAACCTTCTCAATTGCCC
1 ACCCAACCAGAATTTGCAAAAATCTCCAAACCTTCTCAATTGCCC
97383220 AC
1 AC
97383222 AATTCAGTGT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 15 0.32
46 32 0.68
ACGTcount: A:0.37, C:0.35, G:0.06, T:0.22
Consensus pattern (45 bp):
ACCCAACCAGAATTTGCAAAAATCTCCAAACCTTCTCAATTGCCC
Found at i:97383290 original size:13 final size:13
Alignment explanation
Indices: 97383272--97383297 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97383262 AAACAAGAGC
97383272 AGAACACATCCAT
1 AGAACACATCCAT
97383285 AGAACACATCCAT
1 AGAACACATCCAT
97383298 TCAAGTACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15
Consensus pattern (13 bp):
AGAACACATCCAT
Found at i:97396703 original size:9 final size:9
Alignment explanation
Indices: 97396675--97396710 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
97396665 CCAATTTGTG
*
97396675 AAAAAAAAT
1 AAAATAAAT
97396684 AAAATAGAAT
1 AAAATA-AAT
97396694 AAAATAAAT
1 AAAATAAAT
97396703 AAAATAAA
1 AAAATAAA
97396711 GAACACACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (9 bp):
AAAATAAAT
Found at i:97399090 original size:17 final size:17
Alignment explanation
Indices: 97399068--97399101 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97399058 TTTGAAAGAG
97399068 TTTTCAAATATATATGC
1 TTTTCAAATATATATGC
*
97399085 TTTTCAAATTTATATGC
1 TTTTCAAATATATATGC
97399102 ACTAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (17 bp):
TTTTCAAATATATATGC
Found at i:97399508 original size:63 final size:63
Alignment explanation
Indices: 97399409--97399534 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
97399399 GAGGATAACA
97399409 AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
1 AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
97399472 AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
1 AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
97399535 TTTGCGCTCC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (63 bp):
AATATTTGCATATTTAAAGTGGTGAAATTGTTAGTTGACGCCATTAATTCAAGTTTACTTTGC
Found at i:97413280 original size:25 final size:25
Alignment explanation
Indices: 97413246--97413294 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
97413236 GGTTTCAAGC
**
97413246 CTTAATAAAAGTATTGGAGTAGAGG
1 CTTAATAAAAGTATCAGAGTAGAGG
97413271 CTTAATAAAAGTATCAGAGTAGAG
1 CTTAATAAAAGTATCAGAGTAGAG
97413295 ACTGTTCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (25 bp):
CTTAATAAAAGTATCAGAGTAGAGG
Found at i:97418681 original size:12 final size:12
Alignment explanation
Indices: 97418664--97418693 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
97418654 GGTGGTAGAC
97418664 AATGGGAGGAAA
1 AATGGGAGGAAA
97418676 AATGGGAGGAAA
1 AATGGGAGGAAA
97418688 AATGGG
1 AATGGG
97418694 GCAAGTGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.43, T:0.10
Consensus pattern (12 bp):
AATGGGAGGAAA
Found at i:97418759 original size:18 final size:17
Alignment explanation
Indices: 97418732--97418794 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 17
97418722 GTTTTTTTAG
97418732 TTTTTTTTTTGTTAGGT
1 TTTTTTTTTTGTTAGGT
* *
97418749 TTTTCTTTTTTCTT--CT
1 TTTT-TTTTTTGTTAGGT
97418765 TTTTTTTTTTGGGTTAGGT
1 TTTTTTTTTT--GTTAGGT
97418784 TTTTCTTTTTT
1 TTTT-TTTTTT
97418795 TCTTTTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
15 6 0.17
16 5 0.14
17 6 0.17
18 8 0.22
19 5 0.14
20 6 0.17
ACGTcount: A:0.03, C:0.06, G:0.13, T:0.78
Consensus pattern (17 bp):
TTTTTTTTTTGTTAGGT
Found at i:97418808 original size:32 final size:33
Alignment explanation
Indices: 97418723--97418820 Score: 130
Period size: 33 Copynumber: 3.0 Consensus size: 33
97418713 GGTGGCTAGG
**
97418723 TTTTTTTAGTTTTTTTTTT--GTTAGGTTTTTC
1 TTTTTTTTCTTTTTTTTTTGGGTTAGGTTTTTC
97418754 TTTTTTCTTCTTTTTTTTTTTGGGTTAGGTTTTTC
1 TTTTTT-TTC-TTTTTTTTTTGGGTTAGGTTTTTC
97418789 -TTTTTTTCTTTTTTTTTTGGGTTAGGGTTTTT
1 TTTTTTTTCTTTTTTTTTTGGGTTA-GGTTTTT
97418821 TTGGGGGGCT
Statistics
Matches: 60, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
31 6 0.10
32 17 0.28
33 20 0.33
34 5 0.08
35 12 0.20
ACGTcount: A:0.04, C:0.05, G:0.15, T:0.76
Consensus pattern (33 bp):
TTTTTTTTCTTTTTTTTTTGGGTTAGGTTTTTC
Found at i:97419582 original size:88 final size:83
Alignment explanation
Indices: 97419477--97420789 Score: 313
Period size: 88 Copynumber: 15.9 Consensus size: 83
97419467 AACAGACATT
** * *
97419477 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
97419542 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
97419565 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
97419629 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
97419648 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
97419709 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
97419731 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAA-GCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
97419795 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * *
97419818 AAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
97419883 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** * *
97419901 --ATA-A-A--TTGAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATG
1 AAAAACAGATTTTG-AAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATG
*
97419959 AGTTGATTTTTTTG--AGA--G
63 AGTTGA-TTTTTTGAAAAACTG
* * * * *
97419977 ATAGA-A-A--TT-AAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
97420037 TTGATTTTTT-------TG
65 TTGATTTTTTGAAAAACTG
* ** * * ** **
97420049 -AGAACAGAAATTGAAAATACCTC-AACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTCGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAG
*
97420111 TTGA-ATTTTG-AAAAC--
65 TTGATTTTTTGAAAAACTG
* * ** *
97420126 --AGA-A-A--TTGAAATTACCT--CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTCGCA-CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
97420183 TTGATTTTTTTTGAAAGGCAGAAATTG
65 TTGA--TTTTTTG--A---A-AAACTG
** ** ** * ** *
97420210 AAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
97420275 TTGACTTTTTTG----AC--
65 TTGA-TTTTTTGAAAAACTG
** * * *
97420289 ---AACAGAAATTGAAATTACCT--CAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCGCA-CGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
*
97420348 GTTGATTTTTTTGAAAGGCAGAAATTG
64 GTTGA-TTTTTTG--A---A-AAACTG
* ** * * * * * *
97420375 AAAAACGGAAATTGAAAATACCTCG-GCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGA
1 AAAAACAGATTTTGAAAATACCTCGCACGTGAG-CC-AAGGCTCAACTCACCTCTCGCAATATGA
97420439 GTTGATTTTTT-------TG
64 GTTGATTTTTTGAAAAACTG
* ** * * *
97420452 -ACAACAGAAATTGAAATTACCT--CAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCGCA-CGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
*
97420513 GTTGATTTTTTTTGAAAGACAGAAATTG
64 GTTGA--TTTTTT----GA-A-AAACTG
* ** ** * * *
97420541 AAAAACGGAAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCGCAATACGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
* * *
97420605 GTTGATTCTTTCAAAAACATAATA
64 GTTGATTTTTTGAAAAAC----TG
** ** *
97420629 ATGAAAACAGAAATTGAAAATACCTCG-GTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 A--AAAACAGATTTTGAAAATACCTCGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATG
* * * *
97420692 AGCTGATTCTTTCAAAAACATAAT
63 AGTTGATTTTTTGAAAAAC-T--G
** * * *
97420716 AATGAAGACAGAAATTGAAAATACCTCG-GCGTGA-CCTGAGGCTCAACTCACCTATCGCAATAT
1 AA--AA-ACAGATTTTGAAAATACCTCGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATAT
*
97420779 GAGCTGATTTT
62 GAGTTGATTTT
97420790 GAAAAAGTAG
Statistics
Matches: 962, Mismatches: 136, Indels: 254
0.71 0.10 0.19
Matches are distributed among these distances:
71 2 0.00
72 48 0.05
73 10 0.01
74 109 0.11
75 16 0.02
76 104 0.11
77 5 0.01
78 64 0.07
79 3 0.00
80 2 0.00
81 41 0.04
82 13 0.01
83 15 0.02
84 43 0.04
85 13 0.01
86 10 0.01
87 51 0.05
88 204 0.21
89 25 0.03
90 69 0.07
91 40 0.04
92 73 0.08
93 2 0.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:97419681 original size:30 final size:30
Alignment explanation
Indices: 97419645--97419706 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
97419635 TTTTGAAAAA
97419645 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
97419675 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
97419705 CA
1 CA
97419707 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:97419824 original size:14 final size:14
Alignment explanation
Indices: 97419801--97419835 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
97419791 TGAGTTGATT
97419801 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
97419814 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
97419828 TTTGAAAA
1 TTTGAAAA
97419836 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:97419942 original size:78 final size:76
Alignment explanation
Indices: 97419814--97420213 Score: 386
Period size: 76 Copynumber: 5.3 Consensus size: 76
97419804 GAAAACAGAA
** * * * * *
97419814 TTTGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAG-CGTGT-ATCTGAAGCTCAACTCACCTCTCGCAAT
*
97419878 GTGAGTTGATTTT
64 ATGAGTTGATTTT
* * *
97419891 TTTGAAAAATATAAATTGAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTG-AAAATACCTCAGCGTGT-ATCTGAAGCTCAACTCACCTCTCGCAAT
97419956 ATGAGTTGATTTT
64 ATGAGTTGATTTT
* * * * * * *
97419969 TTTGAGAGATAGAAATT-AAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGT-ATCTGAA-GCTCAACTCACCTCTCGCAAT
*
97420032 ATAAGTTGATTTT
64 ATGAGTTGATTTT
* * * * **
97420045 TTTG-AGAACAGAAATTGAAAATACCTCAACGTGTCT-TGAGGCTCAACTCATTTCTCGCAATAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTATCTGAAGCTCAACTCACCTCTCGCAATAT
*
97420108 GAGTTGA--AT
66 GAGTTGATTTT
* * * *
97420117 TTTG-AAAACAGAAATTGAAATTACCTCAGCGTGT-CCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTATCTGAAGCTCAACTCACCTCTCGCAATAT
97420180 GAGTTGATTTTT
66 GAGTTGA-TTTT
**
97420192 TTTGAAAGGCAGAAATTGAAAA
1 TTTGAAAAACAGAAATTGAAAA
97420214 ATGGAAATTG
Statistics
Matches: 267, Mismatches: 46, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
72 63 0.24
74 27 0.10
75 16 0.06
76 82 0.31
77 14 0.05
78 64 0.24
79 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (76 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTATCTGAAGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTT
Found at i:97420021 original size:76 final size:76
Alignment explanation
Indices: 97419855--97420213 Score: 387
Period size: 76 Copynumber: 4.8 Consensus size: 76
97419845 ATGTGACCCG
* * * * *
97419855 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAAACAGAAATTG-AAAATACCTC
* *
97419920 AGTGTGTGATCTGA
65 A--GCGTGATCTCA
* * *
97419934 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAGATAGAAATT-AAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAAACAGAAATTGAAAATACCTCA
*
97419997 GCGCGTGAGC-CA
66 --GCGTGATCTCA
*
97420009 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAG-AACAGAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAAACAGAAATTGAAAATACCTCA
* **
97420073 ACGTG-TCTTG
66 GCGTGATCTCA
** * *
97420083 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGA-AAACAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAAACAGAAATTGAAAATACCTCA
* *
97420145 GCGTG-TCCCG
66 GCGTGATCTCA
*
97420155 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA-AAGGCAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAGAA-ACAGAAATTGAAAA
97420214 ATGGAAATTG
Statistics
Matches: 241, Mismatches: 31, Indels: 19
0.83 0.11 0.07
Matches are distributed among these distances:
72 64 0.27
73 1 0.00
74 33 0.14
75 18 0.07
76 78 0.32
78 46 0.19
79 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAAACAGAAATTGAAAATACCTCA
GCGTGATCTCA
Found at i:97420150 original size:72 final size:73
Alignment explanation
Indices: 97419853--97420378 Score: 439
Period size: 74 Copynumber: 6.8 Consensus size: 73
97419843 ACATGTGACC
* * * *
97419853 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAATACC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG-AAAATACC
* *
97419918 TCAGTGTGTGAT
63 TCAGCGTGT-CT
* * * *
97419930 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAGATAGAAATT-AAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA-AAACAGAAATTGAAAATACC
*
97419994 TCAGCGCGTGAGC-
63 TCA--GCGTG-TCT
* * *
97420007 CAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAGAACAGAAATTGAAAATACCTC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTC
*
97420072 AACGTGTCT
65 AGCGTGTCT
* ** * *
97420081 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
97420145 GCGTGTCC
66 GCGTGTCT
*
97420153 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAATGG
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAA-ACAGAAATTG----A---
** ** *
97420218 AAATTGAAAATACCTCGGCGTGTGAT
56 AAA-T--ACCT-CAGC---GTGT-CT
* * *
97420244 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
97420309 CAGCGTGTC-
64 CAGCGTGTCT
*
97420318 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
97420379 ACGGAAATTG
Statistics
Matches: 366, Mismatches: 55, Indels: 58
0.76 0.11 0.12
Matches are distributed among these distances:
72 64 0.17
73 1 0.00
74 76 0.21
75 28 0.08
76 72 0.20
77 3 0.01
78 51 0.14
79 2 0.01
80 3 0.01
82 1 0.00
83 4 0.01
84 1 0.00
86 3 0.01
87 2 0.01
90 13 0.04
91 10 0.03
92 32 0.09
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:97420232 original size:90 final size:89
Alignment explanation
Indices: 97420127--97420302 Score: 248
Period size: 92 Copynumber: 2.0 Consensus size: 89
97420117 TTTGAAAACA
* * *
97420127 GAAATTGAAATTACCTCAGCGTGT-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-CTT
97420191 TTTTGA-AAGGCAGAAATTGAAAAATG
65 TTTTGACAA--CAGAAATTGAAAAATG
* * *
97420217 GAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
97420282 TTTTGACAACAGAAATTGAAA
65 TTTTGACAACAGAAATTGAAA
97420303 TTACCTCAGC
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
90 34 0.44
91 8 0.10
92 35 0.45
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (89 bp):
GAAATTGAAAATACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACAGAAATTGAAAAATG
Found at i:97420433 original size:165 final size:166
Alignment explanation
Indices: 97420055--97420777 Score: 953
Period size: 165 Copynumber: 4.3 Consensus size: 166
97420045 TTTGAGAACA
** * ** * *
97420055 GAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--A
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
*
97420116 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
97420181 AGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAATG
131 AGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACG
*
97420217 GAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
*
97420282 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
97420347 AGTTGA-TTTTTTTGAAAGGCAGAAATTGAAAAACG
131 AGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACG
* * *
97420382 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
*
97420447 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
97420512 AGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACG
131 AGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACG
* *
97420548 GAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTC
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA--C
* * * *
97420613 TTTCAAAAACATAATAATGAAAACAGAAATTGAAAATACCTCGGTGTGACCTGAGGCTCAACTCA
64 TTT--------T--T--TGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
* * * * * * * *
97420678 CCTCTCGCAATATGAGCTGA--TTCTTTCAAAAACATAATAATG-AAGACA
117 CCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAA-ATTGAAAAACG
*
97420726 GAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTATCGCAATA
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
97420778 TGAGCTGATT
Statistics
Matches: 506, Mismatches: 35, Indels: 26
0.89 0.06 0.05
Matches are distributed among these distances:
162 22 0.04
164 31 0.06
165 160 0.32
166 157 0.31
168 3 0.01
176 31 0.06
178 37 0.07
179 3 0.01
180 62 0.12
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (166 bp):
GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACG
Found at i:97420507 original size:74 final size:77
Alignment explanation
Indices: 97420372--97420544 Score: 244
Period size: 76 Copynumber: 2.3 Consensus size: 77
97420362 AAGGCAGAAA
* * * *
97420372 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATAC
97420437 GAGTTGA-TTTTT
65 GAGTTGATTTTTT
* * * *
97420449 TTGACA-ACAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACG
97420512 AGTTGATTTTTT
66 AGTTGATTTTTT
97420524 TTGAAAGACAGAAATTGAAAA
1 TTGAAAGACAGAAATTGAAAA
97420545 ACGGAAATTG
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
74 33 0.39
75 10 0.12
76 37 0.44
77 5 0.06
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (77 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACG
AGTTGATTTTTT
Found at i:97420543 original size:14 final size:14
Alignment explanation
Indices: 97420524--97420558 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
97420514 TTGATTTTTT
*
97420524 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
97420538 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
97420552 TTGAAAA
1 TTGAAAA
97420559 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:97420545 original size:331 final size:334
Alignment explanation
Indices: 97420051--97420789 Score: 998
Period size: 331 Copynumber: 2.2 Consensus size: 334
97420041 TTTTTTTGAG
** * ***
97420051 AACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCACTCGCAATATGAGTTG
*
97420114 A--ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
66 ATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
* * *
97420177 TATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAATGGAAATTGAAAATACCTCGGCGTGTG
131 TATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTG
* *
97420242 ATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-CTTT-T-T-TGACAACAGAAATTGAAA
196 ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATCTTTATATATGAAAACAGAAATTGAAA
* * * * * **
97420303 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCA
261 ATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTCTTTCAAAAACA
*
97420368 GAA-ATTGAAA
325 GAATAATG-AA
* * *
97420378 AACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTG
1 AACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCACTCGCAATATGAGTTG
* *
97420443 ATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
66 ATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
97420508 TATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTG
131 TATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTG
*
97420573 ACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAAAACA
196 ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TCTTT-------AT-AT-ATGAAAACA
* *
97420638 GAAATTGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
251 GAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
*
97420703 TCAAAAACATAATAATGAA
316 TCAAAAACAGAATAATGAA
* *
97420722 GACAGAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTA-TCGCAATATGAGCT
1 AACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACC-ACTCGCAATATGAGTT
97420784 GATTTT
65 GATTTT
97420790 GAAAAAGTAG
Statistics
Matches: 358, Mismatches: 34, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
327 25 0.07
329 30 0.08
331 156 0.44
333 4 0.01
341 1 0.00
342 39 0.11
343 2 0.01
344 36 0.10
345 65 0.18
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (334 bp):
AACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCACTCGCAATATGAGTTG
ATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTG
ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATCTTTATATATGAAAACAGAAATTGAAA
ATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTTCAAAAACAG
AATAATGAA
Found at i:97420686 original size:180 final size:176
Alignment explanation
Indices: 97420454--97420787 Score: 463
Period size: 180 Copynumber: 1.9 Consensus size: 176
97420444 TTTTTTTGAC
* * *
97420454 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-
* * * * * *
97420519 TTTTTTTGAAAGACAGAA-ATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCT
65 -TTCTTTCAAAAACAGAATAATG-AAAACAGAAATTGAAAATACCTC-G-GCGTGACCTGAGGCT
* * *
97420583 CAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAA
126 CAACTCACCTATCGCAATACGAGCTGATTCTTTCAAAAACATAATAATGAA
* *
97420634 AACAGAAATTGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
* *
97420699 TCTTTCAAAAACATAATAATGAAGACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
66 TCTTTCAAAAACAGAATAATGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
*
97420764 CACCTATCGCAATATGAGCTGATT
131 CACCTATCGCAATACGAGCTGATT
97420788 TTGAAAAAGT
Statistics
Matches: 136, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
176 39 0.29
177 1 0.01
178 34 0.25
179 3 0.02
180 59 0.43
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (176 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TCTTTCAAAAACAGAATAATGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
CACCTATCGCAATACGAGCTGATTCTTTCAAAAACATAATAATGAA
Found at i:97420958 original size:72 final size:72
Alignment explanation
Indices: 97420812--97421006 Score: 214
Period size: 72 Copynumber: 2.7 Consensus size: 72
97420802 ATTAAAAGGT
* * * ** * * * * *
97420812 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTAGCAATATAAGTTGA-AATTGAAAAACAAAAATTGAAAATACCTCAGCGTGC
*
97420877 CCTGAGGC
65 CCCGAGGC
* *
97420885 TCAACTCAGCTCTCGCAATATAAGTTGAAATT-AAAATACAAAAATTGAAAATACCTCAGCGTGC
1 TCAACTCACCTCTAGCAATATAAGTTGAAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGC
97420949 CCCGAGGC
65 CCCGAGGC
* **
97420957 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 TCAACTCACCTCTAGCAATATAAGTTGAAATTGAAAAACAAAAATTGAAAA
97421007 GGCTTAACTC
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
71 7 0.07
72 68 0.65
73 29 0.28
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (72 bp):
TCAACTCACCTCTAGCAATATAAGTTGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCC
CCGAGGC
Found at i:97421086 original size:62 final size:66
Alignment explanation
Indices: 97421006--97421167 Score: 172
Period size: 71 Copynumber: 2.4 Consensus size: 66
97420996 AAAAATTAAA
* * *
97421006 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTT-AA-AAC-TAAAAATACCTCAGCGTG-CCC
1 AGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCCC
97421067 G
66 G
* *
97421068 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAG-TCAATTT--AAACAAC-A-TAAAAATACCTCAACGT
**
97421133 GTCTTG
61 GTCCCG
97421139 AGGCTCAACTCA-TCTCTCGCAATATGAGT
1 AGGCTCAACTCACT-TCTCGCAATATGAGT
97421168 TGATTTTCCT
Statistics
Matches: 83, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
62 26 0.31
63 5 0.06
66 2 0.02
67 3 0.04
70 19 0.23
71 28 0.34
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (66 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCCC
G
Found at i:97427936 original size:19 final size:19
Alignment explanation
Indices: 97427896--97427941 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
97427886 TGGAATATGC
97427896 AATGAATGAATGAATGCAA
1 AATGAATGAATGAATGCAA
* * **
97427915 AATTAATGCATGAATGTTA
1 AATGAATGAATGAATGCAA
97427934 AATGAATG
1 AATGAATG
97427942 TCAGTCATGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.48, C:0.04, G:0.20, T:0.28
Consensus pattern (19 bp):
AATGAATGAATGAATGCAA
Found at i:97430413 original size:12 final size:12
Alignment explanation
Indices: 97430396--97430425 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
97430386 GGTGGTAGAC
97430396 AATGGGAGGAAA
1 AATGGGAGGAAA
97430408 AATGGGAGGAAA
1 AATGGGAGGAAA
97430420 AATGGG
1 AATGGG
97430426 GCAAGTGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.43, T:0.10
Consensus pattern (12 bp):
AATGGGAGGAAA
Found at i:97430526 original size:35 final size:34
Alignment explanation
Indices: 97430464--97430554 Score: 157
Period size: 34 Copynumber: 2.7 Consensus size: 34
97430454 GTTTTTTTAG
*
97430464 TTTTTTTTTT-TGTTAGGTTTTTCTTTTTTCTTC
1 TTTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTC
97430497 TTTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTC
1 TTTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTC
97430531 TTTTTTTTTTGGGTTAGGGTTTTT
1 TTTTTTTTTTGGGTTA-GGTTTTT
97430555 TTTGGGGGCT
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
33 10 0.18
34 38 0.69
35 7 0.13
ACGTcount: A:0.03, C:0.07, G:0.15, T:0.75
Consensus pattern (34 bp):
TTTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTC
Found at i:97431978 original size:40 final size:35
Alignment explanation
Indices: 97431896--97432058 Score: 191
Period size: 35 Copynumber: 4.5 Consensus size: 35
97431886 TCTCATTGAA
* * ***
97431896 ATACCATACCTACATTTTACAACTCGGTATGGGCA
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
* **
97431931 ATGCCATACCTACATTTCTTAACTCAGTATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
*
97431968 ATAATACCATACCTACATATCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
*
97432006 ATACCATACCTACATTTCACAACTTAGTATGGATG
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
97432041 ATACCATACCTACATTTC
1 ATACCATACCTACATTTC
97432059 GCACTTTGCC
Statistics
Matches: 109, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
35 78 0.72
38 2 0.02
40 29 0.27
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:97431980 original size:75 final size:73
Alignment explanation
Indices: 97431890--97432058 Score: 209
Period size: 75 Copynumber: 2.3 Consensus size: 73
97431880 GGTTTTTCTC
* * * * **
97431890 ATTGAAATACCATACCTACATTTTACAACTCGGTATGGGCAATGCCATACCTACATTTCTTAACT
1 ATTGAAATACCATACCTACATTTCACAACTCAGTATGGACAATACCATACCTACATTTCACAACT
97431955 CAGTATGG
66 CAGTATGG
* **
97431963 ATTTGATAATACCATACCTACATATCACAACTCAGTATGGATGATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGACAATACCATACCTACATTTCACAA
*
97432028 CTTAGTATGG
64 CTCAGTATGG
97432038 A-TG--ATACCATACCTACATTTC
1 ATTGAAATACCATACCTACATTTC
97432059 GCACTTTGCC
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
70 17 0.20
73 3 0.04
74 4 0.05
75 59 0.71
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGACAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:97437157 original size:20 final size:18
Alignment explanation
Indices: 97437121--97437163 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
97437111 CTTTATTTTT
*
97437121 ATTTTATTTTTGTTTCTA
1 ATTTTATTTTTGATTCTA
*
97437139 GTTTTATTTTTTGCATTCTA
1 ATTTTA-TTTTTG-ATTCTA
97437159 ATTTT
1 ATTTT
97437164 TTTCTTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 5 0.25
19 6 0.30
20 9 0.45
ACGTcount: A:0.16, C:0.07, G:0.07, T:0.70
Consensus pattern (18 bp):
ATTTTATTTTTGATTCTA
Found at i:97443959 original size:21 final size:21
Alignment explanation
Indices: 97443935--97443982 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
97443925 AGAATACATT
97443935 TTCATCATGTTGAACTCAGAG
1 TTCATCATGTTGAACTCAGAG
97443956 TTCATCATGTTGAACTCAGAG
1 TTCATCATGTTGAACTCAGAG
97443977 TTCATC
1 TTCATC
97443983 TGCTATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (21 bp):
TTCATCATGTTGAACTCAGAG
Done.