Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 333 of 335
Found at i:97446818 original size:29 final size:31
Alignment explanation
Indices: 97446760--97446838 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
97446750 ATCTCAAAAT
*
97446760 TATACATGAACTTTAATTTAATGTATAATTA
1 TATACATGAACTTTAATTTAATGTACAATTA
*
97446791 TATACATGAACTTTAATTT-A-GTGCAATTA
1 TATACATGAACTTTAATTTAATGTACAATTA
* *
97446820 TACACATGAAACTCTAATT
1 TATACATG-AACTTTAATT
97446839 ATGGTTCAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 14 0.33
30 10 0.23
31 19 0.44
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (31 bp):
TATACATGAACTTTAATTTAATGTACAATTA
Found at i:97446933 original size:21 final size:21
Alignment explanation
Indices: 97446908--97446957 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
97446898 TAAATACATC
97446908 AATATATT-TTTATATTATACA
1 AATATATTATTTATA-TATACA
97446929 AATATAATTATTTATATATACA
1 AATAT-ATTATTTATATATACA
97446951 ATATATA
1 A-ATATA
97446958 AACATAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.19
22 11 0.42
23 10 0.38
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (21 bp):
AATATATTATTTATATATACA
Found at i:97446941 original size:25 final size:23
Alignment explanation
Indices: 97446909--97446958 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
97446899 AAATACATCA
97446909 ATAT-ATT-TTTATATTATACAA-
1 ATATAATTATTTATA-TATACAAT
97446930 ATATAATTATTTATATATACAAT
1 ATATAATTATTTATATATACAAT
97446953 ATATAA
1 ATATAA
97446959 ACATAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.15
22 10 0.38
23 12 0.46
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATAATTATTTATATATACAAT
Found at i:97450390 original size:29 final size:29
Alignment explanation
Indices: 97450348--97450409 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
97450338 TTTTTAAGTT
* * * *
97450348 TTTTTTATTTTTATAAATTTTAATAATTA
1 TTTTATATATTTATAAATTTTAAAAAATA
*
97450377 TTTTATATATTTATAATTTTTAAAAAATA
1 TTTTATATATTTATAAATTTTAAAAAATA
97450406 TTTT
1 TTTT
97450410 TATTTAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (29 bp):
TTTTATATATTTATAAATTTTAAAAAATA
Found at i:97451379 original size:16 final size:16
Alignment explanation
Indices: 97451349--97451382 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97451339 CTTTCTCTTA
**
97451349 TTTGTTGATGGAACTT
1 TTTGTTGATCCAACTT
97451365 TTTGTTGATCCAACTT
1 TTTGTTGATCCAACTT
97451381 TT
1 TT
97451383 CATTGTCAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.53
Consensus pattern (16 bp):
TTTGTTGATCCAACTT
Found at i:97459327 original size:11 final size:11
Alignment explanation
Indices: 97459311--97459349 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
97459301 AAATTTTAAA
97459311 TTATATATTTT
1 TTATATATTTT
97459322 TTATATATTTT
1 TTATATATTTT
* *
97459333 TTA-ATAGTTG
1 TTATATATTTT
97459343 TTATATA
1 TTATATA
97459350 AAATGTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (11 bp):
TTATATATTTT
Found at i:97461499 original size:24 final size:26
Alignment explanation
Indices: 97461454--97461512 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 26
97461444 TGATAAAATA
97461454 AATTATTTATGATAAAATTTAAATTATT
1 AATTATTTAT-ATAAAATTTAAA-TATT
97461482 -ATTATTTAT-TAAAA-TTAAATATT
1 AATTATTTATATAAAATTTAAATATT
97461505 AATTATTT
1 AATTATTT
97461513 TTATTACCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
23 4 0.13
24 12 0.40
25 5 0.17
27 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
AATTATTTATATAAAATTTAAATATT
Found at i:97466080 original size:16 final size:16
Alignment explanation
Indices: 97466059--97466092 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97466049 AGACATCCAC
* *
97466059 TTCTTTTTCTTTTCTT
1 TTCTTTTTATTTTATT
97466075 TTCTTTTTATTTTATT
1 TTCTTTTTATTTTATT
97466091 TT
1 TT
97466093 AAAATGATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (16 bp):
TTCTTTTTATTTTATT
Found at i:97466689 original size:3 final size:3
Alignment explanation
Indices: 97466681--97466710 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
97466671 CGTAAATGGG
97466681 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
97466711 TTTGTTATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:97467918 original size:19 final size:19
Alignment explanation
Indices: 97467891--97467932 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
97467881 TAAGAGATTA
97467891 TTAAGTATTCTATTT-ATTT
1 TTAAGTATT-TATTTAATTT
* *
97467910 TTAATTATTTTTTTAATTT
1 TTAAGTATTTATTTAATTT
97467929 TTAA
1 TTAA
97467933 ATCAACAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TTAAGTATTTATTTAATTT
Found at i:97470426 original size:17 final size:18
Alignment explanation
Indices: 97470395--97470429 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
97470385 CATATGCCCT
97470395 GCCCGTGTGGGCCCACAC
1 GCCCGTGTGGGCCCACAC
97470413 GCCCGTGT-GGCCCACAC
1 GCCCGTGTGGGCCCACAC
97470430 AGCCAGGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.11, C:0.46, G:0.31, T:0.11
Consensus pattern (18 bp):
GCCCGTGTGGGCCCACAC
Found at i:97475376 original size:96 final size:97
Alignment explanation
Indices: 97475209--97475395 Score: 306
Period size: 96 Copynumber: 1.9 Consensus size: 97
97475199 TTTAAGAATG
* * * *
97475209 TGTTGGGCTGAGTAACCAGGGTGAGGTGCTTGGTGTTATCTCTCTTCGCGTCAAAAGGTTCAATA
1 TGTTGGGCTGAGTAACCAGGGTGAAGTGCTTGGTATCATCTCTCTTCACGTCAAAAGGTTCAATA
*
97475274 TGTTCTTAAG-AAAAATAAA-AATTAGGAGTA
66 TATTCTTAAGCAAAAATAAATAATTAGGAGTA
97475304 TGTTGGGCTGAGTAACCAGGGTGAAGTGCTTGGCTATCATCTCTCTTCACGTCAAAAGGTTCAAT
1 TGTTGGGCTGAGTAACCAGGGTGAAGTGCTTGG-TATCATCTCTCTTCACGTCAAAAGGTTCAAT
97475369 ATATTCTTAAGCAAAAATAAATAATTA
65 ATATTCTTAAGCAAAAATAAATAATTA
97475396 AAATAAAATA
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
95 32 0.38
96 38 0.45
97 9 0.11
98 5 0.06
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (97 bp):
TGTTGGGCTGAGTAACCAGGGTGAAGTGCTTGGTATCATCTCTCTTCACGTCAAAAGGTTCAATA
TATTCTTAAGCAAAAATAAATAATTAGGAGTA
Found at i:97475404 original size:14 final size:13
Alignment explanation
Indices: 97475382--97475412 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
97475372 TTCTTAAGCA
97475382 AAAATAAATAATT
1 AAAATAAATAATT
97475395 AAAATAAAATAATT
1 AAAAT-AAATAATT
97475409 AAAA
1 AAAA
97475413 AAAGAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAAATAAATAATT
Found at i:97476070 original size:10 final size:10
Alignment explanation
Indices: 97476055--97476102 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
97476045 TTTATCTCCA
97476055 TTATCTTTAT
1 TTATCTTTAT
*
97476065 TTATCTTTAA
1 TTATCTTTAT
* *
97476075 ATATCTTTAG
1 TTATCTTTAT
*
97476085 TTATCTGTAT
1 TTATCTTTAT
*
97476095 GTATCTTT
1 TTATCTTT
97476103 TAGAATTTAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.23, C:0.10, G:0.06, T:0.60
Consensus pattern (10 bp):
TTATCTTTAT
Found at i:97476102 original size:20 final size:20
Alignment explanation
Indices: 97476056--97476093 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97476046 TTATCTCCAT
* *
97476056 TATCTTTATTTATCTTTAAA
1 TATCTTTAGTTATCTGTAAA
97476076 TATCTTTAGTTATCTGTA
1 TATCTTTAGTTATCTGTA
97476094 TGTATCTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (20 bp):
TATCTTTAGTTATCTGTAAA
Found at i:97477556 original size:27 final size:27
Alignment explanation
Indices: 97477508--97477612 Score: 108
Period size: 27 Copynumber: 3.9 Consensus size: 27
97477498 GCGAGGTTGC
* *
97477508 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
97477535 CAGATATTGTGGCAGAGCCACCAG-GA
1 CAGATATTGTGGCAGAGCCACCAGATA
97477561 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
97477588 CAAATAATTGTGGCATATCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
97477613 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
26 8 0.12
27 56 0.84
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:97478018 original size:8 final size:8
Alignment explanation
Indices: 97478002--97478031 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
97477992 CTCAAAGTAC
97478002 CGGCTTTT
1 CGGCTTTT
*
97478010 CGGCATTT
1 CGGCTTTT
97478018 CGGCTTTT
1 CGGCTTTT
97478026 CGGCTT
1 CGGCTT
97478032 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:97479238 original size:26 final size:26
Alignment explanation
Indices: 97479207--97479314 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
97479197 TGAAATTCCC
*
97479207 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
97479233 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
97479259 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
97479285 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97479311 ATCA
1 ATCA
97479315 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:97489820 original size:22 final size:22
Alignment explanation
Indices: 97489795--97489836 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
97489785 ATATAATTAC
* *
97489795 AATAACAATAATGGTAATAAAA
1 AATAAAAATAATAGTAATAAAA
97489817 AATAAAAATAATAGTAATAA
1 AATAAAAATAATAGTAATAA
97489837 TAGCACGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (22 bp):
AATAAAAATAATAGTAATAAAA
Found at i:97490048 original size:12 final size:12
Alignment explanation
Indices: 97490004--97490051 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
97489994 TGTTCATGCG
*
97490004 TAAATATAAAGA
1 TAAATATAAACA
**
97490016 TAGGTATAATACA
1 TAAATATAA-ACA
97490029 TAAAATATAAACA
1 T-AAATATAAACA
97490042 TAAATATAAA
1 TAAATATAAA
97490052 GAGAGAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 16 0.55
13 7 0.24
14 6 0.21
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.27
Consensus pattern (12 bp):
TAAATATAAACA
Found at i:97490115 original size:3 final size:3
Alignment explanation
Indices: 97490109--97490206 Score: 56
Period size: 3 Copynumber: 32.3 Consensus size: 3
97490099 CAATAATAGC
* * * * *
97490109 AAT AAT AAT AAAT ATT GAT AAT AAA AAT AAT AA- AAGG AAT AAA AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
* * * * * *
97490155 AAT AGT AAT AAT AAG AAT ATTT AAT AAT AGT AAT AAT AAC AAC AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
97490201 -AT AAT A
1 AAT AAT A
97490207 TATACATGAA
Statistics
Matches: 71, Mismatches: 19, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
2 4 0.06
3 60 0.85
4 7 0.10
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:97490997 original size:12 final size:12
Alignment explanation
Indices: 97490980--97491004 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97490970 TTGGGTTAGT
97490980 GTTTTGGGCTAA
1 GTTTTGGGCTAA
97490992 GTTTTGGGCTAA
1 GTTTTGGGCTAA
97491004 G
1 G
97491005 GGTTTTGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.36, T:0.40
Consensus pattern (12 bp):
GTTTTGGGCTAA
Found at i:97491258 original size:44 final size:44
Alignment explanation
Indices: 97491193--97491712 Score: 409
Period size: 44 Copynumber: 12.0 Consensus size: 44
97491183 TAAGTTCTTG
* *
97491193 ATCTGCT-TCTTCGATCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
97491236 ATCTGCTGTCTTC-AACTGGTTCCCTATAAACACAAGGATGCCAA
1 ATCTGCTATCTTCGATCT-GTTCCCTATAAGCACAGGGATGCCAA
* *
97491280 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * *
97491322 ATGCTGAAATCTTCGATCTGCTTCACC-----GTA-A---ATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAA
*
97491360 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
** * * * *
97491402 ATGCTGAAATCTTCGATCTGCTTCACC-GTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAA
*
97491448 ATCTGCTATCTTCGATCTGTTTCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
97491492 ATCTGCTGTTTTC-AACTTGTTCCTTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** ** * * * *
97491534 ATGCTGAAATCTTCGATCTGCTTCAATGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
97491580 ATCTGCTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
97491624 ATCTGCTGTTTTC-AACTTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* *
97491668 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATGTCAA
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
97491712 A
1 A
97491713 CCATCTTGGA
Statistics
Matches: 382, Mismatches: 64, Indels: 61
0.75 0.13 0.12
Matches are distributed among these distances:
35 2 0.01
36 6 0.02
37 15 0.04
38 2 0.01
39 1 0.00
40 4 0.01
41 1 0.00
42 6 0.02
43 51 0.13
44 256 0.67
45 34 0.09
46 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:97491413 original size:80 final size:82
Alignment explanation
Indices: 97491280--97491486 Score: 312
Period size: 80 Copynumber: 2.5 Consensus size: 82
97491270 AGGATGCCAA
*
97491280 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCT
97491344 TCACCGT-A-AATGTCAG
65 TCACCGTAAGAATGTCAG
97491360 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTT
97491425 CACCGTAAGCACAGGAATGTCAG
66 CACCGT----A-A-GAATGTCAG
*
97491448 ATCTGCTATCTTCGATCTGTTTCCTATAAGCACAGGGAT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
97491487 GCCAAATCTG
Statistics
Matches: 116, Mismatches: 2, Indels: 10
0.91 0.02 0.08
Matches are distributed among these distances:
80 67 0.58
81 2 0.02
86 1 0.01
88 46 0.40
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (82 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTT
CACCGTAAGAATGTCAG
Found at i:97491597 original size:132 final size:132
Alignment explanation
Indices: 97491377--97491666 Score: 517
Period size: 132 Copynumber: 2.2 Consensus size: 132
97491367 ATCTTCGATC
* *
97491377 TGTTCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCAACGTAAGCACAGGAA
* *
97491442 TGTCAGATCTGCTATCTTCGATCTGTTTCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAA
66 TGTCAGATCTGCTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAA
97491507 CT
131 CT
* *
97491509 TGTTCCTTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCAATGTAAGCACAGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCAACGTAAGCACAGGAA
97491574 TGTCAGATCTGCTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAA
66 TGTCAGATCTGCTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAA
97491639 CT
131 CT
*
97491641 TGTTCCCTATAAACACAGGGATGCCA
1 TGTTCCCTATAAGCACAGGGATGCCA
97491667 AATCTGCTAT
Statistics
Matches: 150, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 150 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCAACGTAAGCACAGGAA
TGTCAGATCTGCTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAA
CT
Found at i:97491698 original size:132 final size:132
Alignment explanation
Indices: 97491192--97491710 Score: 511
Period size: 132 Copynumber: 4.0 Consensus size: 132
97491182 TTAAGTTCTT
* * *
97491192 GATCTGCT-TCTTCGATCTGTTCCCCATAAACACAGGGATGCCAAATCTGCTGTCTTCAACTGGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACTTGT
* ** *
97491256 TCCCTATAAACACAAGGATGCCAAAT-CTGCTATCTTCAA-CTTG-TTCCCTATAAGCACAGGGA
66 TCCCTATAAACACAGGGATGCC--ATGCTGAAATCTTCAATC-TGCTTCCCTATAAGCACAGGAA
97491318 T-TC-
128 TGTCA
* ** * * * * *
97491321 CATGCTGAAATCTTCGATCTGCTTCACC-----GTA-A---ATGTCAGATCTGCTATCTTCGA-T
1 GAT-CTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACT
* * * *
97491376 CTGTTCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTTCACC-GTAAGCACAGG
63 -TGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTC-CCTATAAGCACAGG
97491440 AATGTCA
126 AATGTCA
* *
97491447 GATCTGCTATCTTCGATCTGTTTCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACTTGT
* * * ** *
97491512 TCCTTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCAATGTAAGCACAGGAATGT
66 TCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCCCTATAAGCACAGGAATGT
97491577 CA
131 CA
* *
97491579 GATCTGCTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACTTGT
** *
97491644 TCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCAA-CTTG-TTCCCTATAAGCACAGGGA
66 TCCCTATAAACACAGGGATGCC--ATGCTGAAATCTTCAATC-TGCTTCCCTATAAGCACAGGAA
97491706 TGTCA
128 TGTCA
97491711 AACCATCTTG
Statistics
Matches: 322, Mismatches: 43, Indels: 47
0.78 0.10 0.11
Matches are distributed among these distances:
122 2 0.01
123 15 0.05
124 57 0.18
125 19 0.06
126 2 0.01
127 1 0.00
128 3 0.01
129 3 0.01
130 3 0.01
131 11 0.03
132 189 0.59
133 15 0.05
134 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (132 bp):
GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACTTGT
TCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCCCTATAAGCACAGGAATGT
CA
Found at i:97492156 original size:61 final size:64
Alignment explanation
Indices: 97492039--97492163 Score: 195
Period size: 61 Copynumber: 2.0 Consensus size: 64
97492029 TCATGTATCC
97492039 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
97492103 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
97492164 TTATTGTAGA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 31 0.53
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.34
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:97496527 original size:19 final size:20
Alignment explanation
Indices: 97496503--97496549 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
97496493 AGGGAAAGTT
97496503 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
97496522 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
97496542 -AATGCAAA
1 TAATGCAAA
97496550 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:97499354 original size:22 final size:22
Alignment explanation
Indices: 97499329--97499370 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
97499319 ATATAATTAC
*
97499329 AATAACAATAATG-GTAATAAAA
1 AATAAAAATAA-GAGTAATAAAA
97499351 AATAAAAATAAGAGTAATAA
1 AATAAAAATAAGAGTAATAA
97499371 TAGCACGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.21
Consensus pattern (22 bp):
AATAAAAATAAGAGTAATAAAA
Found at i:97499582 original size:12 final size:12
Alignment explanation
Indices: 97499538--97499585 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
97499528 TGTTCATGCG
*
97499538 TAAATATAAAGA
1 TAAATATAAACA
**
97499550 TAGGTATAATACA
1 TAAATATAA-ACA
97499563 TAAAATATAAACA
1 T-AAATATAAACA
97499576 TAAATATAAA
1 TAAATATAAA
97499586 GAGAGAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 16 0.55
13 7 0.24
14 6 0.21
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.27
Consensus pattern (12 bp):
TAAATATAAACA
Found at i:97500530 original size:12 final size:12
Alignment explanation
Indices: 97500513--97500537 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97500503 TTGGGTTAGT
97500513 GTTTTGGGCTAA
1 GTTTTGGGCTAA
97500525 GTTTTGGGCTAA
1 GTTTTGGGCTAA
97500537 G
1 G
97500538 GGTTTTGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.36, T:0.40
Consensus pattern (12 bp):
GTTTTGGGCTAA
Found at i:97502999 original size:45 final size:45
Alignment explanation
Indices: 97502932--97503022 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
97502922 TTTTTTTAAG
* *
97502932 TAAAAAATTACTATGAATAGGGATCGTGTTTTAAACTCTTTTCAA
1 TAAAAAATTAATATGAAGAGGGATCGTGTTTTAAACTCTTTTCAA
*
97502977 TAAAAAATTAATATGAAGAGGGATTGTGTTTTAAACTCTTTTCAA
1 TAAAAAATTAATATGAAGAGGGATCGTGTTTTAAACTCTTTTCAA
97503022 T
1 T
97503023 GTTTTAACTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (45 bp):
TAAAAAATTAATATGAAGAGGGATCGTGTTTTAAACTCTTTTCAA
Found at i:97507232 original size:94 final size:94
Alignment explanation
Indices: 97507064--97507259 Score: 374
Period size: 94 Copynumber: 2.1 Consensus size: 94
97507054 AAGGACGTTG
97507064 AGAAAACTGGCCAGTGACTGTCTTAAATGGGGAGATCCTATATAAAAGAAGAAAGGATCAGGTGC
1 AGAAAA-TGGCCAGTGACTGTCTTAAATGGGGAGATCCTATATAAAAGAAGAAAGGATCAGGTGC
*
97507129 TACTAAGATGTGTAAATGCTGTTGAGGCTA
65 TACTAAGATGTGTAAACGCTGTTGAGGCTA
97507159 AGAAAATGGCCAGTGACTGTCTTAAATGGGGAGATCCTATATAAAAGAAGAAAGGATCAGGTGCT
1 AGAAAATGGCCAGTGACTGTCTTAAATGGGGAGATCCTATATAAAAGAAGAAAGGATCAGGTGCT
97507224 ACTAAGATGTGTAAACGCTGTTGAGGCTA
66 ACTAAGATGTGTAAACGCTGTTGAGGCTA
97507253 AGAAAAT
1 AGAAAAT
97507260 CTTGGAAAAA
Statistics
Matches: 100, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
94 94 0.94
95 6 0.06
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.23
Consensus pattern (94 bp):
AGAAAATGGCCAGTGACTGTCTTAAATGGGGAGATCCTATATAAAAGAAGAAAGGATCAGGTGCT
ACTAAGATGTGTAAACGCTGTTGAGGCTA
Found at i:97509253 original size:44 final size:43
Alignment explanation
Indices: 97509190--97509303 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 43
97509180 CATAATGACG
*
97509190 AATCTTATCTTCCTGAAGTTGCAGTGAAGTAGATTGAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGAA-TAGATTGAAGCCACA
* * *
97509234 AATCTTATCTCCCTGAAGTTTCAGTGGAATATATTGAAGCCATA
1 AATCTTATCTCCCTGAAGTTGCAGT-GAATAGATTGAAGCCACA
**
97509278 AATCCGATAC-CCCTGAAGTTGCAGTG
1 AATCTTAT-CTCCCTGAAGTTGCAGTG
97509304 GGATGGATTG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
43 1 0.02
44 56 0.92
45 4 0.07
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGAATAGATTGAAGCCACA
Found at i:97509322 original size:44 final size:45
Alignment explanation
Indices: 97509131--97509322 Score: 126
Period size: 44 Copynumber: 4.2 Consensus size: 45
97509121 ACAGATCAGA
* * *
97509131 GAAACCATAAATCC--TACACCCTTGAAGTTGCAGTGGGATGGATT
1 GAAACCATAAATCCGATACTCCC-TGAAGTTGCAGTGGAATAGATT
* * *
97509175 GAAATCAT-AATGACGAATCTTATCTTCCTGAAGTTGCAGT-GAAGTAGATT
1 GAAACCATAAAT-CCG-A---TA-CTCCCTGAAGTTGCAGTGGAA-TAGATT
* * ** * *
97509225 GAAGCCACAAATCTTAT-CTCCCTGAAGTTTCAGTGGAATATATT
1 GAAACCATAAATCCGATACTCCCTGAAGTTGCAGTGGAATAGATT
* * *
97509269 GAAGCCATAAATCCGATAC-CCCTGAAGTTGCAGTGGGATGGATT
1 GAAACCATAAATCCGATACTCCCTGAAGTTGCAGTGGAATAGATT
*
97509313 GAAATCATAA
1 GAAACCATAA
97509323 TGGTGAATCT
Statistics
Matches: 112, Mismatches: 24, Indels: 24
0.70 0.15 0.15
Matches are distributed among these distances:
43 3 0.03
44 71 0.63
45 4 0.04
46 1 0.01
49 3 0.03
50 24 0.21
51 6 0.05
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (45 bp):
GAAACCATAAATCCGATACTCCCTGAAGTTGCAGTGGAATAGATT
Found at i:97510772 original size:33 final size:33
Alignment explanation
Indices: 97510676--97510754 Score: 158
Period size: 33 Copynumber: 2.4 Consensus size: 33
97510666 AAAAGGTTAT
97510676 GTATACTTTGTGTATACCATATGAAAAGGAAAG
1 GTATACTTTGTGTATACCATATGAAAAGGAAAG
97510709 GTATACTTTGTGTATACCATATGAAAAGGAAAG
1 GTATACTTTGTGTATACCATATGAAAAGGAAAG
97510742 GTATACTTTGTGT
1 GTATACTTTGTGT
97510755 GTGCCACTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (33 bp):
GTATACTTTGTGTATACCATATGAAAAGGAAAG
Found at i:97512107 original size:44 final size:43
Alignment explanation
Indices: 97512040--97512621 Score: 453
Period size: 44 Copynumber: 12.9 Consensus size: 43
97512030 TTAAGGGTGT
* *
97512040 TACAAATCTTATCTTCCTGAAGTTGCAGTGGAACAGATTGAAG
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * *
97512083 TCACAAATCTTATCTCCCTAAAGTTGTAGTGGAGTAGATTGAAG
1 T-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* *
97512127 TTACAAATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * * * *
97512171 ATAGAAAATCTTATTTTCCTGAAGTTACAGTGGAACAGATTAAAACTAAA
1 -TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-----GAAG
* * *
97512221 TAAATAAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAG
1 T--ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * *
97512266 TAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATTGAAG
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * *
97512310 TAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATTGAAG
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
** * * *
97512354 TCACAGTGGTGAATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAG
1 T-ACA------AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* *
97512404 CCACAAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * *
97512448 ATAGCAAATATTATCTCTCTGAAGTTACAGTAGAGCAGATTAAAG
1 -TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * * **
97512493 CTATAAACCTTATCTCGCTGAAGTTGCAGTGGAGTAGGTCCAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * *
97512537 TTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * *
97512581 ATATCGAATCTTATTTCCCTAAAGTTACAGTGGAACAGATT
1 -TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
97512622 AAAGCTACTA
Statistics
Matches: 437, Mismatches: 81, Indels: 40
0.78 0.15 0.07
Matches are distributed among these distances:
43 2 0.00
44 261 0.60
45 103 0.24
49 1 0.00
50 69 0.16
51 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (43 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
Found at i:97512351 original size:183 final size:179
Alignment explanation
Indices: 97512041--97512529 Score: 531
Period size: 183 Copynumber: 2.7 Consensus size: 179
97512031 TAAGGGTGTT
* * *
97512041 ACAAATCTTATCTTCCTGAAGTTGCAGTGGAACAGATTGAAGTCA-CAAATCTTATCTCCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGT-AGCAAATCTTATCTCTCTAAA
* * * *
97512105 GTTGTAGTGGAGTAGATTGAAGTTACAAATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA
65 GTTGCAGTAGAGTAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA
* *
97512170 G-A-TAGAAAATCTTAT-T-TTCCTGAAGTTACAGTGGAACAGATTAAAACTAAATAA
130 GCAGTAGAAAATCTTATCTCTT--TGAAGTTACAATAGAACAGATTAAAAC------A
* * *
97512224 ATAAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGTAGCAAATCTTATCTCTCTAAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAGCAAATCTTATCTCTCTAAAG
* * *
97512289 TTGCAGTAGAGTAGATTGAAG-TAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATTGAA
66 TTGCAGTAGAGTAGATTGAAGCTA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA
* ** * * * *
97512353 GTCACAGTGGTGAATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCC
130 G---CAGTAGAAAATCTTATCTCTTTGAAGTTACAATAGAACAGATTAAAACA
* * *
97512406 ACAAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATAGCAAATATTATCTCTCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TAGCAAATCTTATCTCTCTAAA
* * * * * *
97512471 GTTACAGTAGAGCAGATTAAAGCTATAAACCTTATCTCGCTGAAGTTGCAGTGGAGTAG
65 GTTGCAGTAGAGTAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAG
97512530 GTCCAAGTTA
Statistics
Matches: 260, Mismatches: 35, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
182 41 0.16
183 181 0.70
184 2 0.01
187 1 0.00
188 32 0.12
189 1 0.00
190 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (179 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAGCAAATCTTATCTCTCTAAAG
TTGCAGTAGAGTAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG
CAGTAGAAAATCTTATCTCTTTGAAGTTACAATAGAACAGATTAAAACA
Found at i:97512411 original size:94 final size:89
Alignment explanation
Indices: 97512040--97513683 Score: 628
Period size: 94 Copynumber: 17.6 Consensus size: 89
97512030 TTAAGGGTGT
* ** * *
97512040 TACAAATCTTATCTTCCTGAAGTTGCAGTGGAACAGATTGAAG-TCA-CAAATCTTATCTCCCTA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGAT-AGCAAATCTTATCTCTCTG
* * * * *
97512103 AAGTTGTAGTGGAGTAGATTGAAGT
65 AAGTTGCAGTAGAGCAGATTAAAGC
* * *
97512128 TACAAATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGAAAATCTTAT-TTTCCTG
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCT-CTG
* * * *
97512192 AAGTTACAGTGGAACAGATTAAAAC
65 AAGTTGCAGTAGAGCAGATTAAAGC
* *
97512217 TAAATAAATAAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAG-TAGCAAATCTTATCT
1 ----T--ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAATCTTATCT
* * *
97512281 CTCTAAAGTTGCAGTAGAGTAGATTGAAG-
60 CTCTGAAGTTGCAGTAGAGCAGATTAAAGC
* * * * **
97512310 TAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATTGAAGTCACAGTGGTGAATCTTATCT
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG----A-TAGCAAATCTTATCT
* *
97512375 CTTTGAAGTTGCAATAGAGCAGATTAAAGC
60 CTCTGAAGTTGCAGTAGAGCAGATTAAAGC
* * * *
97512405 CACAAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATAGCAAATATTATCTCTCTGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTCTGA
*
97512470 AGTTACAGTAGAGCAGATTAAAGC
66 AGTTGCAGTAGAGCAGATTAAAGC
* * * * ** * * * *
97512494 TATAAACCTTATCTCGCTGAAGTTGCAGTGGAGTAGGTCCAAGTTA-CAAGTCTTATCTCCCTAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTCTGA
* * * *
97512558 AGTTGCAGTGGAGCAGACTGAAGA
66 AGTTGCAGTAGAGCAGATTAAAGC
* * * * ** *
97512582 TATCGAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACTAGTTGTCATGGCAAAT
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATT---G--A--A---G--ATAGCAAAT
* * * *
97512647 CTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGC
53 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGC
* * * * * *
97512684 CACAAATCCTA-CACCCCTGAAGTTTCAGTAGGA-TGGATTGAAGTTATCATGGCGAATCTTATC
1 TACAAATCTTATC-TCCCTGAAGTTGCAGT-GGAGTAGATTGAAG--AT-A--GCAAATCTTATC
* * * * *
97512747 TCCCTAAAGTTGTAGTGGAGCATATTAAAGC
59 TCTCTGAAGTTGCAGTAGAGCAGATTAAAGC
* * * * * * *
97512778 CATAGATCCTATAC-CCCTGAAGTTACAGTAGGA-CAGATTAAAGTAATCATGGCAAATCTTATC
1 TACAAATCTTAT-CTCCCTGAAGTTGCAGT-GGAGTAGATTGAAG--AT-A--GCAAATCTTATC
* * * *
97512841 TCCCTAAAGTTAC-GT-GCAGCTGATTAAAGC
59 TCTCTGAAGTTGCAGTAG-AGCAGATTAAAGC
* * * * **
97512871 TACAGATCCTATAC-CCTTGAAGTTGTAGTGG-G-ACGGATTGAAGTTATCATGGTGAATCTTAT
1 TACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGTA--GATTGAAG--AT-A--GCAAATCTTAT
* * * * *
97512933 CTCCCTAAAATTACAGTGGAGCAGATTAAAGC
58 CTCTCTGAAGTTGCAGTAGAGCAGATTAAAGC
* * * * * * * * *
97512965 CACAGACCCTATAC-CCTTGAAGTTACAGTGG-GATGGATTAAAGTTATCATGGCGAATCTTATC
1 TACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAG-TAGATTGAAG--AT-A--GCAAATCTTATC
* * * *
97513028 T-TCCTAAAGTTGCAGTGGAGCAGATTGAAGA
59 TCT-CTGAAGTTGCAGTAGAGCAGATTAAAGC
* * * * * ** * * * *
97513059 TAGCAAATCTTATTTCTCTAAAGTTACAGTCGAACATATTAAAGTTACAAGTTACAAATATTATC
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG--A-TAG---CAAATCTTATC
* * * *
97513124 TCCCTGAAGTTGCAGTGGAGCAAATTAAAGA
59 TCTCTGAAGTTGCAGTAGAGCAGATTAAAGC
* * ** * *
97513155 TAGCAGATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCA-A-CAAGTCTTATAC-CTC
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-ATAGCAAATCTTAT-CTCTC
* *
97513217 TGAAGTTGCAGT-GGGTCAGATTAAATC
63 TGAAGTTGCAGTAGAG-CAGATTAAAGC
* * *
97513244 TACCATAGTAAATCTTATC-CCCTTAAAGTTACAGTGG-G-ACGGATTGAAGTCATCATAGCAAG
1 TA-C-----AAATCTTATCTCCC-TGAAGTTGCAGTGGAGTA--GATTGAAG-----ATAGCAAA
*
97513306 TCTTATCTC-CTTGAAGTTGCAGTAGAATAGACTAAAGATTGAAGC
52 TCTTATCTCTC-TGAAGTTGCAGTAG---AG-C---AGATTAAAGC
* * * *
97513351 CACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGATTGAAGCCACAAATCTTATCT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGA-T--AG---CAAATCTTATCT
* * * **
97513416 CCCTAAAGTTGCAGTGGAGCAGATTAAAAA
60 CTCTGAAGTTGCAGTAGAGCAGATTAAAGC
* * * * *
97513446 TA-ATAAGTCTTATCTCCATGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAATCTTAT
1 TACA-AA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGA-T--AG---CAAATCTTAT
* * * * * **
97513510 CCCCCTAAAGTTGCAGTGGAGCAAATTAAAAA
58 CTCTCTGAAGTTGCAGTAGAGCAGATTAAAGC
* ** * * *
97513542 TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCA-TAAATCTTATCTCCCTA
1 T-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTCTG
* **
97513606 AAGTTACAGTAGAGCAGATTAAAAA
65 AAGTTGCAGTAGAGCAGATTAAAGC
* * *
97513631 TAACAAATCTTATCTCCCTGAAGTTACAGTAGAGTAGATTGAAGTTA-CAAATC
1 T-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAATC
97513684 CCATACCCCT
Statistics
Matches: 1243, Mismatches: 218, Indels: 189
0.75 0.13 0.11
Matches are distributed among these distances:
87 1 0.00
88 114 0.09
89 248 0.20
90 2 0.00
91 5 0.00
92 4 0.00
93 80 0.06
94 332 0.27
95 85 0.07
96 196 0.16
97 4 0.00
98 5 0.00
99 8 0.01
100 23 0.02
101 54 0.04
102 68 0.05
103 2 0.00
104 2 0.00
106 1 0.00
107 9 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (89 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTCTGA
AGTTGCAGTAGAGCAGATTAAAGC
Found at i:97512916 original size:187 final size:186
Alignment explanation
Indices: 97512636--97513053 Score: 568
Period size: 187 Copynumber: 2.2 Consensus size: 186
97512626 CTACTAGTTG
*
97512636 TCATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACAAATCCTACACCCC
1 TCATGGCAAATCTTATCTCCCTAAAG-T-TAGTGCAGCAGATTAAAGCCACAAATCCTACACCCC
* * **
97512701 TGAAGTTTCAGTAGGATGGATTGAAGTTATCATGGCGAATCTTATCTCCCTAAAGTTGTAGTGGA
64 TGAAGTTTCAGTAGGACGGATTGAAGTTATCATGGCGAATCTTATCTCCCTAAAATTACAGTGGA
* * *
97512766 GCATATTAAAGCCATAGATCCTATACCCCTGAAGTTACAGTAGGACAGATTAAAGTAA
129 GCAGATTAAAGCCACAGACCCTATACCCCTGAAGTTACAGTAGGACAGATTAAAGTAA
* * * * *
97512824 TCATGGCAAATCTTATCTCCCTAAAGTTACGTGCAGCTGATTAAAGCTACAGATCCTATACCCTT
1 TCATGGCAAATCTTATCTCCCTAAAGTTA-GTGCAGCAGATTAAAGCCACAAATCCTACACCCCT
* *
97512889 GAAGTTGT-AGTGGGACGGATTGAAGTTATCATGGTGAATCTTATCTCCCTAAAATTACAGTGGA
65 GAAGTT-TCAGTAGGACGGATTGAAGTTATCATGGCGAATCTTATCTCCCTAAAATTACAGTGGA
* * ** *
97512953 GCAGATTAAAGCCACAGACCCTATACCCTTGAAGTTACAGTGGGATGGATTAAAGTTA
129 GCAGATTAAAGCCACAGACCCTATACCCCTGAAGTTACAGTAGGACAGATTAAAGTAA
* * *
97513011 TCATGGCGAATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATT
1 TCATGGCAAATCTTATCTCCCTAAAGTT--AGTGCAGCAGATT
97513054 GAAGATAGCA
Statistics
Matches: 202, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
186 2 0.01
187 162 0.80
188 37 0.18
189 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (186 bp):
TCATGGCAAATCTTATCTCCCTAAAGTTAGTGCAGCAGATTAAAGCCACAAATCCTACACCCCTG
AAGTTTCAGTAGGACGGATTGAAGTTATCATGGCGAATCTTATCTCCCTAAAATTACAGTGGAGC
AGATTAAAGCCACAGACCCTATACCCCTGAAGTTACAGTAGGACAGATTAAAGTAA
Found at i:97513083 original size:45 final size:46
Alignment explanation
Indices: 97513019--97513683 Score: 254
Period size: 45 Copynumber: 14.1 Consensus size: 46
97513009 TATCATGGCG
* *
97513019 AATCTTATCTT-CCTAAAGTTGCAGTGGAGCAGATTGAAG-ATAGCA
1 AATCTTAT-TTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTATAGCA
* * * * * * *
97513064 AATCTTATTTCTCTAAAGTTACAGTCGAACATATTAAAGTTACAAGTTACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TA-TAG---CA
* * *
97513115 AATATTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAG-ATAGCA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTATAGCA
* * *
97513160 GATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCA-A-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTATAGCA
* * * *
97513204 AGTCTTA-TACCTCTGAAGTTGCAGTGG-GTCAGATTAAATCTACCATAGTA
1 AATCTTATTTCC-CTGAAGTTGCAGTGGAG-CAGATTAAA-GT---ATAGCA
* * * * *
97513254 AATCTTA-TCCCCTTAAAGTTACAGTGG-GACGGATTGAAGTCATCATAGCA
1 AATCTTATTTCCC-TGAAGTTGCAGTGGAG-CAGATTAAAG---T-ATAGCA
* * * * ** *
97513304 AGTCTTATCTCCTTGAAGTTGCAGTAGAATAGACTAAAG-ATTGAAGCCACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTA-T--AG---CA
* ** *
97513355 AATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAG-ATTGAAGCCACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTA-T--AG---CA
* * * **
97513406 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA-AATAATA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTATAGCA
* * * * ** *
97513451 AGTCTTATCTCCATGAAGTTGCAGTAGAATAGACTAAAG-ATTGAAGCCACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTA-T--AG---CA
** * * * *
97513502 AATCTTATCCCCCTAAAGTTGCAGTGGAGCAAATTAAA-AATAACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTATAGCA
* * *
97513547 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCAT---A
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TATAGCA
* * * * * *
97513591 AATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTAAA-AATAACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTATAGCA
* * * * *
97513636 AATCTTATCTCCCTGAAGTTACAGTAGAGTAGATTGAAGT-TA-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTATAGCA
97513680 AATC
1 AATC
97513684 CCATACCCCT
Statistics
Matches: 486, Mismatches: 91, Indels: 87
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.00
43 3 0.01
44 74 0.15
45 175 0.36
46 3 0.01
47 3 0.01
48 10 0.02
49 3 0.01
50 61 0.13
51 151 0.31
52 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (46 bp):
AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTATAGCA
Found at i:97513366 original size:51 final size:51
Alignment explanation
Indices: 97513306--97513526 Score: 283
Period size: 51 Copynumber: 4.5 Consensus size: 51
97513296 TCATAGCAAG
*
97513306 TCTTATCTCCTTGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAA
*
97513357 TCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGATTGAAGCCACAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAA
* * ** * * * *
97513408 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA-AAT--A---ATAAG
1 TCTTATCTCCCTGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAA
*
97513453 TCTTATCTCCATGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAA
* *
97513504 TCTTATCCCCCTAAAGTTGCAGT
1 TCTTATCTCCCTGAAGTTGCAGT
97513527 GGAGCAAATT
Statistics
Matches: 143, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
45 33 0.23
46 2 0.01
48 2 0.01
50 2 0.01
51 104 0.73
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (51 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAA
Found at i:97513476 original size:147 final size:141
Alignment explanation
Indices: 97513303--97513584 Score: 420
Period size: 147 Copynumber: 2.0 Consensus size: 141
97513293 TCATCATAGC
* *
97513303 AAGTCTTATCTCCTTGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAATCTTATCTCCC
1 AAGTCTTATCTCCATGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAATCTTATCCCCC
* * * *
97513368 TGAAGTTGCAGTGGAATAGACTAAAGATTGAAGCCACAAATCTTATCTCCCTAAAGTTGCAGTGG
66 TAAAGTTGCAGTGGAACAAACTAAA-AAT--A---ACAAATCTTATCTCCCTAAAGTTGCAGTGG
97513433 AGCAGATTAAAAATAAT
125 AGCAGATTAAAAATAAT
97513450 AAGTCTTATCTCCATGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAATCTTATCCCCC
1 AAGTCTTATCTCCATGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAATCTTATCCCCC
* * * *
97513515 TAAAGTTGCAGTGGAGCAAATTAAAAATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA
66 TAAAGTTGCAGTGGAACAAACTAAAAATAACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
97513580 TTAAA
131 TTAAA
97513585 GCCATAAATC
Statistics
Matches: 125, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
141 39 0.31
144 1 0.01
146 2 0.02
147 83 0.66
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (141 bp):
AAGTCTTATCTCCATGAAGTTGCAGTAGAATAGACTAAAGATTGAAGCCACAAATCTTATCCCCC
TAAAGTTGCAGTGGAACAAACTAAAAATAACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
TTAAAAATAAT
Found at i:97513639 original size:89 final size:89
Alignment explanation
Indices: 97513392--97513699 Score: 346
Period size: 89 Copynumber: 3.4 Consensus size: 89
97513382 AATAGACTAA
* * * * * * *
97513392 AGATTGAAGCCACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAATAAGTCTT
1 AGATTAAAGCCACAAATCTTATCCCCCTAAAGTTACAGTAGAGCAAATTAAAAATAACAAATCTT
* *
97513457 ATCTCCATGAAGTTGCAGTAGAATAGACT
66 ATCTCCCTGAAGTTACAGTAG---AG--T
* * *
97513486 AAAGATTGAAGCCACAAATCTTATCCCCCTAAAGTTGCAGTGGAGCAAATTAAAAATAACAAATC
1 --AGATTAAAGCCACAAATCTTATCCCCCTAAAGTTACAGTAGAGCAAATTAAAAATAACAAATC
* *
97513551 TTATCTCCCTGAAGTTGCAGTGGAGT
64 TTATCTCCCTGAAGTTACAGTAGAGT
* * *
97513577 AGATTAAAGCCATAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTAAAAATAACAAATCTT
1 AGATTAAAGCCACAAATCTTATCCCCCTAAAGTTACAGTAGAGCAAATTAAAAATAACAAATCTT
97513642 ATCTCCCTGAAGTTACAGTAGAGT
66 ATCTCCCTGAAGTTACAGTAGAGT
* ** ** *
97513666 AGATTGAAGTTACAAATCCCATACCCCTAAAGTT
1 AGATTAAAGCCACAAATCTTATCCCCCTAAAGTT
97513700 GTAGTGGGAC
Statistics
Matches: 190, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
89 107 0.56
91 1 0.01
93 2 0.01
96 80 0.42
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (89 bp):
AGATTAAAGCCACAAATCTTATCCCCCTAAAGTTACAGTAGAGCAAATTAAAAATAACAAATCTT
ATCTCCCTGAAGTTACAGTAGAGT
Found at i:97513857 original size:139 final size:139
Alignment explanation
Indices: 97513595--97513846 Score: 346
Period size: 139 Copynumber: 1.8 Consensus size: 139
97513585 GCCATAAATC
*
97513595 TTATCTCCCTAAAGTTACAGTAGAGCAGATTAAAAATAACAAATCTTATCTCCCTGAAGTTACAG
1 TTATCTCCCTAAAGTTACAGTAGAGCAGATTAAAAATAACAAATCTCATCTCCCTGAAGTTACAG
* *
97513660 TAGAGTAGATTGAAGTTACAAATCCCATACCCCTAAAGTTGTAGTGGGACGAATTGAAGTTATTA
66 TAGAGTAGATTGAAGTTACAAATCCCATACCCATAAAGTTGCAGTGGGACGAATTGAAGTTATTA
97513725 TGACGAATT
131 TGACGAATT
* ** * * *
97513734 TTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAAATAACAAATCTCATCTCCTTGAAGTAGTA-
1 TTATCTCCCTAAAGTTACAGTAGAGCAGATTAAAAATAACAAATCTCATCTCCCTGAAGT--TAC
* * ** *
97513798 A-TGGAGTAGATTGAAGTTATAAATCCCATATTCATGAAGTTGCAGTGGG
64 AGTAGAGTAGATTGAAGTTACAAATCCCATACCCATAAAGTTGCAGTGGG
97513847 TTAGAATGAA
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
139 94 0.97
140 1 0.01
141 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (139 bp):
TTATCTCCCTAAAGTTACAGTAGAGCAGATTAAAAATAACAAATCTCATCTCCCTGAAGTTACAG
TAGAGTAGATTGAAGTTACAAATCCCATACCCATAAAGTTGCAGTGGGACGAATTGAAGTTATTA
TGACGAATT
Found at i:97514039 original size:11 final size:10
Alignment explanation
Indices: 97514008--97514042 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
97513998 GCCCGGGCCC
*
97514008 AAACAAAAAA
1 AAACAAACAA
97514018 AAACAAACAA
1 AAACAAACAA
*
97514028 AAACAAACCA
1 AAACAAACAA
97514038 AAACA
1 AAACA
97514043 GAAAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (10 bp):
AAACAAACAA
Found at i:97514729 original size:10 final size:10
Alignment explanation
Indices: 97514714--97514738 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
97514704 AATCGGCGAT
97514714 CACGGTGGCC
1 CACGGTGGCC
97514724 CACGGTGGCC
1 CACGGTGGCC
97514734 CACGG
1 CACGG
97514739 CGGACGAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.40, G:0.40, T:0.08
Consensus pattern (10 bp):
CACGGTGGCC
Found at i:97516259 original size:17 final size:19
Alignment explanation
Indices: 97516239--97516279 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
97516229 ATAATTTTAA
*
97516239 AAAATATA-TAAACA-ATC
1 AAAATATACTAAAAACATC
97516256 AAAA-ATACTAAAAACATC
1 AAAATATACTAAAAACATC
97516274 AAAATA
1 AAAATA
97516280 AATATTTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.15
17 9 0.45
18 7 0.35
19 1 0.05
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAATATACTAAAAACATC
Found at i:97516261 original size:18 final size:18
Alignment explanation
Indices: 97516238--97516277 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
97516228 TATAATTTTA
*
97516238 AAAAATA-TATAAACAATC
1 AAAAATACTAAAAAC-ATC
97516256 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
97516274 AAAA
1 AAAA
97516278 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:97516403 original size:30 final size:31
Alignment explanation
Indices: 97516359--97516422 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
97516349 ACTTAACAAG
*
97516359 CAAATGCCTCTAAAATAAT-AACAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAAATTAA
* *
97516389 CAAATGTCTTTAAAATAATAAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAAATTAA
97516420 CAA
1 CAA
97516423 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.25
Consensus pattern (31 bp):
CAAATGCCTCTAAAATAATAAAAAAAATTAA
Found at i:97527647 original size:19 final size:20
Alignment explanation
Indices: 97527623--97527661 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
97527613 TATTTTTAAA
97527623 TTGATAAAA-TAAATTATTT
1 TTGATAAAATTAAATTATTT
97527642 TTGATAAAATTTAAATTATT
1 TTGATAAAA-TTAAATTATT
97527662 GATTTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TTGATAAAATTAAATTATTT
Found at i:97527657 original size:25 final size:25
Alignment explanation
Indices: 97527629--97527699 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 25
97527619 TAAATTGATA
97527629 AAATAAATTATTTTTGA-TAAAATTT
1 AAATAAATTATTTTTGATTAAAA-TT
* *
97527654 AAAT-TATTGATTTTTTATTAAAATT
1 AAATAAATT-ATTTTTGATTAAAATT
97527679 AAATATTAATTATTTTT-ATTA
1 AAATA--AATTATTTTTGATTA
97527700 CCAAAAAAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
24 3 0.08
25 17 0.45
26 9 0.24
27 6 0.16
28 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (25 bp):
AAATAAATTATTTTTGATTAAAATT
Found at i:97527694 original size:26 final size:26
Alignment explanation
Indices: 97527586--97527699 Score: 76
Period size: 26 Copynumber: 4.3 Consensus size: 26
97527576 AATTGGTTGC
* *
97527586 TTTTATT-AAGTTAAATATTAA-CAT
1 TTTTATTAAAATTAAATATTAATTAT
* * *
97527610 TTTTATTTTTAAATTGATAAAATAAATTAT
1 TTTTA--TTAAAATT-A-AATATTAATTAT
*
97527640 TTTTGA-TAAAATTTAA-ATT-ATTGATT
1 TTTT-ATTAAAATTAAATATTAATT-A-T
97527666 TTTTATTAAAATTAAATATTAATTAT
1 TTTTATTAAAATTAAATATTAATTAT
97527692 TTTTATTA
1 TTTTATTA
97527700 CCAAAAAAGT
Statistics
Matches: 70, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
24 8 0.11
25 4 0.06
26 27 0.39
27 8 0.11
28 10 0.14
29 6 0.09
30 6 0.09
31 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (26 bp):
TTTTATTAAAATTAAATATTAATTAT
Found at i:97536481 original size:17 final size:18
Alignment explanation
Indices: 97536450--97536487 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
97536440 CTTTCATTTC
* *
97536450 TTTTTCTTTTGTTTTTGT
1 TTTTTCTTTTATTTTTAT
97536468 TTTTTC-TTTATTTTTAT
1 TTTTTCTTTTATTTTTAT
97536485 TTT
1 TTT
97536488 AAAATGATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.05, C:0.05, G:0.05, T:0.84
Consensus pattern (18 bp):
TTTTTCTTTTATTTTTAT
Found at i:97537044 original size:21 final size:21
Alignment explanation
Indices: 97537010--97537053 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
97537000 ATTTTTTTTA
*
97537010 TTTTTAAGAGTCTTCTGAATT
1 TTTTTAAAAGTCTTCTGAATT
* * *
97537031 TTTTTAAAATTCTTTTGTATT
1 TTTTTAAAAGTCTTCTGAATT
97537052 TT
1 TT
97537054 CTCTTTTTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.07, G:0.09, T:0.61
Consensus pattern (21 bp):
TTTTTAAAAGTCTTCTGAATT
Found at i:97537065 original size:17 final size:19
Alignment explanation
Indices: 97537043--97537082 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
97537033 TTTAAAATTC
*
97537043 TTTTGTA-TTTTCTCT-TT
1 TTTTGTACTTTTATCTATT
97537060 TTTTGTACTTTTATCTATT
1 TTTTGTACTTTTATCTATT
97537079 TTTT
1 TTTT
97537083 TAAAAGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 7 0.35
19 6 0.30
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.75
Consensus pattern (19 bp):
TTTTGTACTTTTATCTATT
Found at i:97543132 original size:10 final size:9
Alignment explanation
Indices: 97543096--97543141 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
97543086 ATTAACATGC
*
97543096 AAGAAAATA
1 AAGAAATTA
97543105 AAGAAATTA
1 AAGAAATTA
97543114 AAGAAATTA
1 AAGAAATTA
*
97543123 AATTAAATTA
1 AA-GAAATTA
*
97543133 AACAAATTA
1 AAGAAATTA
97543142 TATGAATTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
9 25 0.76
10 8 0.24
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (9 bp):
AAGAAATTA
Found at i:97544789 original size:14 final size:13
Alignment explanation
Indices: 97544770--97544806 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
97544760 AACCCAACCC
97544770 AAAAAAAAAATCA
1 AAAAAAAAAATCA
97544783 AAAAAAAAAATCA
1 AAAAAAAAAATCA
97544796 AAAAAGAAAAA
1 AAAAA-AAAAA
97544807 ACCTAATCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.86, C:0.05, G:0.03, T:0.05
Consensus pattern (13 bp):
AAAAAAAAAATCA
Found at i:97545070 original size:27 final size:29
Alignment explanation
Indices: 97545040--97545114 Score: 109
Period size: 27 Copynumber: 2.6 Consensus size: 29
97545030 AGAGAAGAAA
97545040 TTTTTTTAGATTCAAGAAGAGA-TTTT-T
1 TTTTTTTAGATTCAAGAAGAGATTTTTCT
* *
97545067 TTTTTTGAGATTCAAGAGGAGATTTTTCT
1 TTTTTTTAGATTCAAGAAGAGATTTTTCT
97545096 TTTTTTTGAGATTCAAGAA
1 TTTTTTT-AGATTCAAGAA
97545115 CAAAAAATCA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
27 20 0.49
28 4 0.10
29 7 0.17
30 10 0.24
ACGTcount: A:0.28, C:0.05, G:0.17, T:0.49
Consensus pattern (29 bp):
TTTTTTTAGATTCAAGAAGAGATTTTTCT
Found at i:97545101 original size:30 final size:27
Alignment explanation
Indices: 97545040--97545114 Score: 107
Period size: 30 Copynumber: 2.7 Consensus size: 27
97545030 AGAGAAGAAA
97545040 TTTTTTT-AGATTCAAGAAGAGATTTT
1 TTTTTTTGAGATTCAAGAAGAGATTTT
*
97545066 TTTTTTTGAGATTCAAGAGGAGATTTTTCT
1 TTTTTTTGAGATTCAAGAAGAGA--TTT-T
97545096 TTTTTTTGAGATTCAAGAA
1 TTTTTTTGAGATTCAAGAA
97545115 CAAAAAATCA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.16
27 14 0.33
29 3 0.07
30 19 0.44
ACGTcount: A:0.28, C:0.05, G:0.17, T:0.49
Consensus pattern (27 bp):
TTTTTTTGAGATTCAAGAAGAGATTTT
Found at i:97545507 original size:3 final size:3
Alignment explanation
Indices: 97545499--97545687 Score: 92
Period size: 3 Copynumber: 61.0 Consensus size: 3
97545489 TGCATTTTAA
97545499 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* *
97545545 TAGT GTA- TAT TTT TAT GTA- CAT ATAT GTAT GTAT ATACT T-T TAT ATAT
1 TA-T -TAT TAT TAT TAT -TAT TAT -TAT -TAT -TAT -TA-T TAT TAT -TAT
* * * * * *
97545593 ATAG TAT TGT T-T T-T TA- AATT TAA TAT TTT TAT T-T GCTCT T-T GTAT
1 -TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT --TAT TAT -TAT
97545638 T-T CTA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
97545682 TAT TAT
1 TAT TAT
97545688 AATATGGTAG
Statistics
Matches: 150, Mismatches: 15, Indels: 42
0.72 0.07 0.20
Matches are distributed among these distances:
2 15 0.10
3 104 0.69
4 27 0.18
5 4 0.03
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:97545816 original size:16 final size:15
Alignment explanation
Indices: 97545785--97545827 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
97545775 CCTTCATTCC
*
97545785 ATTATTATTATTACT
1 ATTATTATTTTTACT
97545800 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
97545816 ATCATTATTTTT
1 ATTATTATTTTT
97545828 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:97545952 original size:16 final size:16
Alignment explanation
Indices: 97545931--97545962 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
97545921 CTATTGTTAC
97545931 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
97545947 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
97545963 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:97545970 original size:3 final size:3
Alignment explanation
Indices: 97545962--97546097 Score: 100
Period size: 3 Copynumber: 44.7 Consensus size: 3
97545952 TTCTCATCAC
* * *
97545962 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT T-AT TAT TAT TAT
* * * * * * *
97546009 CTAA TA- TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
97546054 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
97546098 GCACTACTTT
Statistics
Matches: 107, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
2 7 0.07
3 88 0.82
4 12 0.11
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:97546141 original size:12 final size:12
Alignment explanation
Indices: 97546054--97546143 Score: 76
Period size: 12 Copynumber: 7.5 Consensus size: 12
97546044 CTTAATAGAT
*
97546054 TATTATTATTAT
1 TATTATTATTAC
*
97546066 TATTATTATTAT
1 TATTATTATTAC
*
97546078 TATTATTATTAT
1 TATTATTATTAC
**
97546090 TATTATTAGCAC
1 TATTATTATTAC
*
97546102 TACTT-TTACTAC
1 TA-TTATTATTAC
*
97546114 TATTATTTAATA-
1 TATTA-TTATTAC
*
97546126 TATTATTTTTAC
1 TATTATTATTAC
97546138 TATTAT
1 TATTAT
97546144 CGTCATATTG
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
11 6 0.09
12 53 0.80
13 7 0.11
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.60
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:97546219 original size:22 final size:22
Alignment explanation
Indices: 97546189--97546249 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
97546179 TTATTATATC
*
97546189 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
97546211 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
97546233 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
97546250 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:97555055 original size:205 final size:205
Alignment explanation
Indices: 97554703--97555881 Score: 2017
Period size: 205 Copynumber: 5.8 Consensus size: 205
97554693 GTAATAGGCC
* * *
97554703 ACACATAGCAGATCTCGCCTTCAGACGATTTCA--CTGAAGCAGATCCAAGATGGTTTGACATCC
1 ACACATAGCAGATCTCACCTTCAGATG-TTT-ATGCTGAAGCAGATCCAAGATGGTTTGGCATCC
*
97554766 TTGTGTTTACAAGAAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
64 TTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
97554831 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
129 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
97554896 GATGGAGAGCAG
194 GATGGAGAGCAG
*
97554908 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
*
97554973 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTATGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
*
97555038 TCTAAGATGATTTGTCGTTTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
97555103 TGGAGAGCAG
196 TGGAGAGCAG
* * *
97555113 ACACATAGCAGATCTCATCTTCAGATGATT-TCCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
*
97555177 GTGTTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
97555242 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
*
97555307 TGGAGAACAG
196 TGGAGAGCAG
*
97555317 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
97555382 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
97555447 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
97555512 TGGAGAGCAG
196 TGGAGAGCAG
* * *
97555522 ACATATAGCAGATCTCACCTTCAGATGATTT-CGCTAAAGCAGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATG-TTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
97555586 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
65 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
97555651 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
130 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
97555716 ATGGAGAGCAG
195 ATGGAGAGCAG
* * * *
97555727 ACACATAGCAGATCTCACCTTCGGATGTTTATGCTGAAGCGGATCCAAGATGGATTGGCATCTTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
* * * * ** * * *
97555792 ATGCTTACAAGGAACAAATCGAA-TCATAGTTGATTTGGCTTTCCCGTGCTTACGTTAAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
* *
97555856 TCTAAGATGATTTGGCATCTCTGTAT
131 TCTAAGATGATTTGTCGTCTCTGTAT
97555882 TGTTAGGGAT
Statistics
Matches: 926, Mismatches: 43, Indels: 11
0.94 0.04 0.01
Matches are distributed among these distances:
203 1 0.00
204 260 0.28
205 662 0.71
206 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (205 bp):
ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
TGGAGAGCAG
Found at i:97555495 original size:409 final size:410
Alignment explanation
Indices: 97554703--97555881 Score: 2110
Period size: 409 Copynumber: 2.9 Consensus size: 410
97554693 GTAATAGGCC
* * *
97554703 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGACATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
*
97554768 GTGTTTACAAGAAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
97554833 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
97554898 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTT
196 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTT
*
97554963 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTATG
261 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
*
97555028 ATGAAGCAAATCTAAGATGATTTGTCGTTTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
326 ATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
97555093 TTCACTTTGATGGAGAGCAG
391 TTCACTTTGATGGAGAGCAG
*
97555113 ACACATAGCAGATCTCATCTTCAGATGATTTC-CTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
*
97555177 GTGTTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
97555242 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
*
97555307 TGGAGAACAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTT
196 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTT
97555372 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
261 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
97555437 ATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
326 ATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
97555502 TTCACTTTGATGGAGAGCAG
391 TTCACTTTGATGGAGAGCAG
* * *
97555522 ACATATAGCAGATCTCACCTTCAGATGATTTCGCTAAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
97555587 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
97555652 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
* *
97555717 TGGAGAGCAGACACATAGCAGATCTCACCTTCGGATGTTTATGCTGAAGCGGATCCAAGATGGAT
196 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTT
* * * * * ** *
97555782 TGGCATCTTTATGCTTACAAGGAACAAATCGAA-TCATAGTTGATTTGGCTTTCCCGTGCTTACG
261 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
* * * *
97555846 TTAAAGCAAATCTAAGATGATTTGGCATCTCTGTAT
326 ATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTAT
97555882 TGTTAGGGAT
Statistics
Matches: 740, Mismatches: 28, Indels: 3
0.96 0.04 0.00
Matches are distributed among these distances:
409 459 0.62
410 281 0.38
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (410 bp):
ACACATAGCAGATCTCACCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTT
TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
ATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
TTCACTTTGATGGAGAGCAG
Found at i:97555879 original size:614 final size:614
Alignment explanation
Indices: 97554703--97555881 Score: 2024
Period size: 614 Copynumber: 1.9 Consensus size: 614
97554693 GTAATAGGCC
*
97554703 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGACATCCTT
1 ACACATAGCAGATCTCACCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGACATCCTT
97554768 GTGTTTACAAGAAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGAAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
97554833 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
* * *
97554898 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTT
196 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGGTT
*
97554963 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTATG
261 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
*
97555028 ATGAAGCAAATCTAAGATGATTTGTCGTTTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
326 ATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
*
97555093 TTCACTTTGATGGAGAGCAGACACATAGCAGATCTCATCTTCAGATGATTTCCTGAAGCAGATCC
391 TTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGATTTCCTGAAGCAGATCC
* * * * *
97555158 AAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCAT
456 AAGATGGATTGGCATCCTTATGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCAC
* * *
97555223 GTGATTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAG
521 GTGATTACGATAAAGCAAATCTAAGATGATTTGGCATCTCTGTATCGTCAGAGAACGAATCGAAG
97555288 TTTGGCATCTTCACTTTGATGGAGAACAG
586 TTTGGCATCTTCACTTTGATGGAGAACAG
* * *
97555317 ACACATAGCAGATCTCACCTTCAGATG-TTT-ATGCTGAAGCGGATCCAAGATGGTTTGGCATCC
1 ACACATAGCAGATCTCACCTTCAGACGATTTCA--CTGAAGCAGATCCAAGATGGTTTGACATCC
*
97555380 TTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
64 TTGTGTTTACAAGAAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
97555445 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
129 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
*
97555510 GATGGAGAGCAGACATATAGCAGATCTCACCTTCAGATGATTT-CGCTAAAGCAGATCCAAGATG
194 GATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATG-TTTACGCTAAAGCAGATCCAAGATG
97555574 GTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATT
258 GTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATT
97555639 ACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGC
323 ACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGC
* * * *
97555704 ATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCGGATGTTTATGCTGAAGCGG
388 ATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGATT-TCCTGAAGCAG
* * *
97555769 ATCCAAGATGGATTGGCATCTTTATGCTTACAAGGAACAAATCGAA-TCATAGTTGATTTGGCTT
452 ATCCAAGATGGATTGGCATCCTTATGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTT
* * *
97555833 TCCCGTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTAT
517 TCACGTGATTACGATAAAGCAAATCTAAGATGATTTGGCATCTCTGTAT
97555882 TGTTAGGGAT
Statistics
Matches: 531, Mismatches: 30, Indels: 8
0.93 0.05 0.01
Matches are distributed among these distances:
612 1 0.00
613 3 0.01
614 474 0.89
615 53 0.10
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (614 bp):
ACACATAGCAGATCTCACCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGACATCCTT
GTGTTTACAAGAAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGGTT
TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
ATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
TTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGATTTCCTGAAGCAGATCC
AAGATGGATTGGCATCCTTATGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCAC
GTGATTACGATAAAGCAAATCTAAGATGATTTGGCATCTCTGTATCGTCAGAGAACGAATCGAAG
TTTGGCATCTTCACTTTGATGGAGAACAG
Found at i:97556033 original size:44 final size:43
Alignment explanation
Indices: 97555955--97556040 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
97555945 GATTTCAGCA
* *
97555955 TGGCATCCCTGTGTTTATAAGGAGCAAGTTGAAGACAGCAGATT
1 TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGA-AGCAGATT
**
97555999 TGGCATCCCTGTGTTTATGGGGAAC-AGATCGAAGAAGCAGAT
1 TGGCATCCCTGTGTTTATAAGGAACAAG-TCGAAGAAGCAGAT
97556041 CAAGAACTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 9 0.24
44 28 0.76
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (43 bp):
TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGAAGCAGATT
Found at i:97556272 original size:12 final size:12
Alignment explanation
Indices: 97556255--97556289 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
97556245 ACCCAACCCA
97556255 AAAAAAAAAATC
1 AAAAAAAAAATC
97556267 AAAAAAAAAATC
1 AAAAAAAAAATC
97556279 AAAAAAGAAAA
1 AAAAAA-AAAA
97556290 AACCTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 18 0.82
13 4 0.18
ACGTcount: A:0.86, C:0.06, G:0.03, T:0.06
Consensus pattern (12 bp):
AAAAAAAAAATC
Found at i:97556560 original size:30 final size:30
Alignment explanation
Indices: 97556524--97556601 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
97556514 AGAGAAGAAA
*
97556524 TTTTTTGAGATTCAAGAAGAGATTTTTTTT
1 TTTTTTGAGATTCAAGAAGAGATTTTTCTT
*
97556554 TTTTTTGAGATTCAAGAGGAGATTTTTCTT
1 TTTTTTGAGATTCAAGAAGAGATTTTTCTT
97556584 TTTTTTGAGATTCAAGAA
1 TTTTTTGAGATTCAAGAA
97556602 CAAAAAATCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.27, C:0.05, G:0.18, T:0.50
Consensus pattern (30 bp):
TTTTTTGAGATTCAAGAAGAGATTTTTCTT
Found at i:97556993 original size:3 final size:3
Alignment explanation
Indices: 97556985--97557023 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
97556975 TGCATTTTAA
97556985 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
97557024 GTGTATATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:97557128 original size:3 final size:3
Alignment explanation
Indices: 97557120--97557169 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
97557110 TGTATTTCTA
97557120 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
97557168 TA
1 TA
97557170 GCACTACTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:97557213 original size:12 final size:12
Alignment explanation
Indices: 97557120--97557215 Score: 79
Period size: 12 Copynumber: 8.0 Consensus size: 12
97557110 TGTATTTCTA
*
97557120 TATTATTATTAT
1 TATTACTATTAT
*
97557132 TATTATTATTAT
1 TATTACTATTAT
*
97557144 TATTATTATTAT
1 TATTACTATTAT
*
97557156 TATTATTATTAT
1 TATTACTATTAT
**
97557168 TAGCACTACTT-T
1 TATTACTA-TTAT
*
97557180 TACTACTATTATT
1 TATTACTATTA-T
*
97557193 TAATA-TATTAT
1 TATTACTATTAT
*
97557204 TTTTACTATTAT
1 TATTACTATTAT
97557216 CGTCATATTG
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
11 6 0.08
12 59 0.82
13 7 0.10
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.60
Consensus pattern (12 bp):
TATTACTATTAT
Found at i:97557291 original size:22 final size:22
Alignment explanation
Indices: 97557261--97557321 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
97557251 TTATTATATC
*
97557261 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
97557283 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
97557305 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
97557322 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:97559177 original size:22 final size:21
Alignment explanation
Indices: 97559147--97559193 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
97559137 TACAAATTAA
97559147 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
97559169 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
97559190 ATCT
1 ATCT
97559194 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:97559187 original size:16 final size:16
Alignment explanation
Indices: 97559166--97559216 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
97559156 ATTACAAGAT
97559166 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
97559182 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
97559201 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
97559217 ATATTTCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:97559199 original size:19 final size:21
Alignment explanation
Indices: 97559164--97559206 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
97559154 AGATTACAAG
97559164 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
97559185 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
97559204 ATC
1 ATC
97559207 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:97559617 original size:45 final size:45
Alignment explanation
Indices: 97559566--97559651 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
97559556 TGATATATGC
* *
97559566 TATCTTTGATCTGCTCTCCGTCTAATACTGAGACGCCAAATCTAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTAT
97559611 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
97559652 TTGCTTCTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.33
Consensus pattern (45 bp):
TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTAT
Found at i:97560481 original size:205 final size:205
Alignment explanation
Indices: 97559745--97560452 Score: 1276
Period size: 205 Copynumber: 3.5 Consensus size: 205
97559735 AAATCTGCTT
*
97559745 CTTCGATTTGTT-TCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCA
1 CTTCGATTTGTTCT-CTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCA
97559809 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
97559874 TGGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCC-CCGTCGAAGTG
130 TGGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTG
97559938 GAGATGCCAGA
195 GAGATGCCAGA
*
97559949 CTTCGATTTGTTCTCTGACGATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
97560014 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
97560079 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTATCTGCCCTCCGTCAAAATGG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
97560144 AGATGCCAGA
196 AGATGCCAGA
* *
97560154 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGTTTCAATGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
97560219 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
97560284 GGATCTACTTCAATATAAACATCTGAAGGTTGGATCTGCTATGTGTTTGCCCTCCGTCGAAGTAG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
97560349 AGATGCCAGA
196 AGATGCCAGA
*
97560359 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
97560424 GTGAAAGCCAAATCAACTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
97560453 CTACTCTCCG
Statistics
Matches: 483, Mismatches: 19, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
204 177 0.37
205 306 0.63
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
AGATGCCAGA
Found at i:97560496 original size:44 final size:44
Alignment explanation
Indices: 97560445--97560537 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
97560435 ATCAACTATG
** *
97560445 TCTTCGATCTACTCTCCGCCAATACAGAGATGCCAAATCTGGTA
1 TCTTCGATCTACTCTCCAACAATACAGAGATGCCAAATCTGCTA
*
97560489 TCTTCGATCTACTCTCTAACAATACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTACTCTCCAACAATACAGAGATGCCAAATCTGCTA
97560533 TCTTC
1 TCTTC
97560538 AACTTGTTCC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.30
Consensus pattern (44 bp):
TCTTCGATCTACTCTCCAACAATACAGAGATGCCAAATCTGCTA
Found at i:97560637 original size:88 final size:88
Alignment explanation
Indices: 97560525--97561007 Score: 477
Period size: 88 Copynumber: 5.5 Consensus size: 88
97560515 GAGATGCCAA
* * * *
97560525 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCGTGCTAAAATCCTCGATCTGCT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCT
97560589 TCGCTGTAAGCACAGGAGTGTCAG
65 TCGCTGTAAGCACAGGAGTGTCAG
* * ** *
97560613 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGTCAAAT-CTGCTATCTTC-AACTTG
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATG-C-CATGCTGAAATCTTCGATC-TG
* * * *
97560676 -TTCCCTATAAACACAGG-GATG-C-C
63 CTTCGCTGTAAGCACAGGAG-TGTCAG
** * * * * * **
97560699 ATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACA-GGAGTGTCA-GATCTGTTATCTTCGATC
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCATG--CTGAAATCTTCGATC
* * * * * *
97560762 T-ATTCCCTATAAACACAGG-GATGCCAA
61 TGCTTCGCTGTAAGCACAGGAG-TGTCAG
* * *
97560789 ATCTGCTATCTTC-AACTTGTTCCCTGTAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCT
*
97560853 TCGCTGTAAGCACAGGAATGTCAG
65 TCGCTGTAAGCACAGGAGTGTCAG
97560877 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTT
*
97560942 CGCTGTAAGCACAGGAATGTCAG
66 CGCTGTAAGCACAGGAGTGTCAG
97560965 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCA
97561008 AATCTTATTT
Statistics
Matches: 330, Mismatches: 44, Indels: 42
0.79 0.11 0.10
Matches are distributed among these distances:
86 3 0.01
87 32 0.10
88 261 0.79
89 31 0.09
90 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (88 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTT
CGCTGTAAGCACAGGAGTGTCAG
Found at i:97560718 original size:132 final size:132
Alignment explanation
Indices: 97560481--97560919 Score: 736
Period size: 132 Copynumber: 3.3 Consensus size: 132
97560471 GAGATGCCAA
* * * * *
97560481 ATCTGGTATCTTCGATCTACTCTCTA-ACAATACAGAGATGCCAAATCTGCTATCTTCAACTTGT
1 ATCTGTTATCTTCGATCTATTCCCTATA-AACACAGGGATGCCAAATCTGCTATCTTCAACTTGT
*
97560545 TCCCTATAAACACAGGGATGCCGTGCTAAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGT
65 TCCCTATAAACACAGGGATGCCATGCTAAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGT
97560610 CAG
130 CAG
* *
97560613 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGTCAAATCTGCTATCTTCAACTTGTT
1 ATCTGTTATCTTCGATCTATTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
*
97560678 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
66 CCCTATAAACACAGGGATGCCATGCTAAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
97560743 AG
131 AG
97560745 ATCTGTTATCTTCGATCTATTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
1 ATCTGTTATCTTCGATCTATTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
* * *
97560810 CCCTGTAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTC
66 CCCTATAAACACAGGGATGCCATGCTAAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
97560875 AG
131 AG
* *
97560877 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCA
1 ATCTGTTATCTTCGATCTATTCCCTATAAACACAGGGATGCCA
97560920 TGCTGAAATC
Statistics
Matches: 289, Mismatches: 17, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
132 288 1.00
133 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (132 bp):
ATCTGTTATCTTCGATCTATTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
CCCTATAAACACAGGGATGCCATGCTAAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
AG
Found at i:97561940 original size:18 final size:17
Alignment explanation
Indices: 97561909--97561949 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
97561899 CCATTTTTTC
97561909 TTTTTTCATTTTCCATTT
1 TTTTTTCATTTTCC-TTT
97561927 TTCTTTTC-TTTTCCTTT
1 TT-TTTTCATTTTCCTTT
97561944 TTTTTT
1 TTTTTT
97561950 TGAAATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.18
17 5 0.23
18 8 0.36
19 5 0.23
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTCATTTTCCTTT
Found at i:97565632 original size:15 final size:16
Alignment explanation
Indices: 97565614--97565643 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97565604 TTTGTTGTTT
97565614 CTACTG-TTGTTTCTG
1 CTACTGTTTGTTTCTG
97565629 CTACTGTTTGTTTCT
1 CTACTGTTTGTTTCT
97565644 TTCTCTTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.07, C:0.20, G:0.17, T:0.57
Consensus pattern (16 bp):
CTACTGTTTGTTTCTG
Found at i:97566209 original size:36 final size:36
Alignment explanation
Indices: 97566168--97566236 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
97566158 TCAACAAAAT
*
97566168 CACATTTGGAAACTTCACAAAATAAAATCTATCAAA
1 CACATTTGGAAACCTCACAAAATAAAATCTATCAAA
97566204 CACATTTGGAAACCTCACAAAATAAAATCTATC
1 CACATTTGGAAACCTCACAAAATAAAATCTATC
97566237 CAGTTTTGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.48, C:0.22, G:0.06, T:0.25
Consensus pattern (36 bp):
CACATTTGGAAACCTCACAAAATAAAATCTATCAAA
Found at i:97567562 original size:19 final size:19
Alignment explanation
Indices: 97567538--97567587 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
97567528 TTTTATACTT
97567538 CACCAACTATAACTTAGTC
1 CACCAACTATAACTTAGTC
97567557 CACCAACTATAACTTAGTC
1 CACCAACTATAACTTAGTC
97567576 CACCAACTATAA
1 CACCAACTATAA
97567588 AATCAACTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.40, C:0.32, G:0.04, T:0.24
Consensus pattern (19 bp):
CACCAACTATAACTTAGTC
Found at i:97569791 original size:30 final size:30
Alignment explanation
Indices: 97569755--97569815 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
97569745 CAATTATAAC
97569755 AAGATAAAATATATATTAACTGAAAGACTT
1 AAGATAAAATATATATTAACTGAAAGACTT
97569785 AAGATAAAATATATATTAACTGAAAGACTT
1 AAGATAAAATATATATTAACTGAAAGACTT
97569815 A
1 A
97569816 TAAATTGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.30
Consensus pattern (30 bp):
AAGATAAAATATATATTAACTGAAAGACTT
Found at i:97570091 original size:19 final size:19
Alignment explanation
Indices: 97570067--97570104 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
97570057 TATTATTGTC
97570067 TAAGATATTTTCATTAATG
1 TAAGATATTTTCATTAATG
97570086 TAAGATATTTTCATTAATG
1 TAAGATATTTTCATTAATG
97570105 GAATTCACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (19 bp):
TAAGATATTTTCATTAATG
Found at i:97576179 original size:10 final size:10
Alignment explanation
Indices: 97576164--97576213 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
97576154 TAATTTTAGG
97576164 ATTTAT-TTT
1 ATTTATCTTT
97576173 CATTTATCTTT
1 -ATTTATCTTT
97576184 ATTTATCTTT
1 ATTTATCTTT
97576194 ATTTAT-TTGT
1 ATTTATCTT-T
97576204 ATTTATCTTT
1 ATTTATCTTT
97576214 TAGAATTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:97582012 original size:14 final size:14
Alignment explanation
Indices: 97581993--97582037 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
97581983 AGAGGGGAGT
97581993 AAAAGTTTTGAGGG
1 AAAAGTTTTGAGGG
97582007 AAAAG---TGAGGAG
1 AAAAGTTTTGAGG-G
97582019 TAAAAGTTTTGAGGG
1 -AAAAGTTTTGAGGG
97582034 AAAA
1 AAAA
97582038 ATAAAAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
11 5 0.19
12 1 0.04
13 5 0.19
14 9 0.35
15 1 0.04
16 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (14 bp):
AAAAGTTTTGAGGG
Found at i:97583800 original size:14 final size:14
Alignment explanation
Indices: 97583783--97583813 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
97583773 TTTATTTTTG
97583783 TTTATAGTCTAATT
1 TTTATAGTCTAATT
*
97583797 TTTATATTCTAATT
1 TTTATAGTCTAATT
97583811 TTT
1 TTT
97583814 CTTTTGTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65
Consensus pattern (14 bp):
TTTATAGTCTAATT
Found at i:97586471 original size:3 final size:3
Alignment explanation
Indices: 97586463--97586500 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
97586453 GTCATTGAGT
97586463 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
97586501 TCGTTTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:97588686 original size:64 final size:66
Alignment explanation
Indices: 97588607--97588750 Score: 184
Period size: 64 Copynumber: 2.2 Consensus size: 66
97588597 ACGGCCTGGC
* ** * * *
97588607 CACACGGGCATGTGGGATCTCACATGGGTGTGGGAGAAGCGAAGGAAAACACATACAGCCT-A-G
1 CACACGGGCGTGTGGGATCTCACATGGGCATGGGAAAAGCGAAAGAAAACACACACAGCCTGAGG
97588670 A
66 A
* **
97588671 CACACGGGCGTGTGGGATCTCACATGGGCATGGGAAAAGTGAAAGAAAACACACATGGCCTGGAG
1 CACACGGGCGTGTGGGATCTCACATGGGCATGGGAAAAGCGAAAGAAAACACACACAGCCT-GAG
97588736 GA
65 GA
97588738 CACACGGGCGTGT
1 CACACGGGCGTGT
97588751 CCATGGCCGT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
64 52 0.76
66 1 0.01
67 15 0.22
ACGTcount: A:0.31, C:0.21, G:0.34, T:0.14
Consensus pattern (66 bp):
CACACGGGCGTGTGGGATCTCACATGGGCATGGGAAAAGCGAAAGAAAACACACACAGCCTGAGG
A
Found at i:97589031 original size:205 final size:205
Alignment explanation
Indices: 97588679--97589086 Score: 816
Period size: 205 Copynumber: 2.0 Consensus size: 205
97588669 GACACACGGG
97588679 CGTGTGGGATCTCACATGGGCATGGGAAAAGTGAAAGAAAACACACATGGCCTGGAGGACACACG
1 CGTGTGGGATCTCACATGGGCATGGGAAAAGTGAAAGAAAACACACATGGCCTGGAGGACACACG
97588744 GGCGTGTCCATGGCCGTGGAAAACTGGGTTAATTTTTAATTGCACATGGGCTGAAAATACTCCAC
66 GGCGTGTCCATGGCCGTGGAAAACTGGGTTAATTTTTAATTGCACATGGGCTGAAAATACTCCAC
97588809 ACGGTTGTGTCACACGACCATGTGGCCCAAACCCTAGAATTCCTCTCTCAATTTGTCTTTTTCTT
131 ACGGTTGTGTCACACGACCATGTGGCCCAAACCCTAGAATTCCTCTCTCAATTTGTCTTTTTCTT
97588874 CTTCCCCACC
196 CTTCCCCACC
97588884 CGTGTGGGATCTCACATGGGCATGGGAAAAGTGAAAGAAAACACACATGGCCTGGAGGACACACG
1 CGTGTGGGATCTCACATGGGCATGGGAAAAGTGAAAGAAAACACACATGGCCTGGAGGACACACG
97588949 GGCGTGTCCATGGCCGTGGAAAACTGGGTTAATTTTTAATTGCACATGGGCTGAAAATACTCCAC
66 GGCGTGTCCATGGCCGTGGAAAACTGGGTTAATTTTTAATTGCACATGGGCTGAAAATACTCCAC
97589014 ACGGTTGTGTCACACGACCATGTGGCCCAAACCCTAGAATTCCTCTCTCAATTTGTCTTTTTCTT
131 ACGGTTGTGTCACACGACCATGTGGCCCAAACCCTAGAATTCCTCTCTCAATTTGTCTTTTTCTT
97589079 CTTCCCCA
196 CTTCCCCA
97589087 ACCAAGCCAC
Statistics
Matches: 203, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
205 203 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (205 bp):
CGTGTGGGATCTCACATGGGCATGGGAAAAGTGAAAGAAAACACACATGGCCTGGAGGACACACG
GGCGTGTCCATGGCCGTGGAAAACTGGGTTAATTTTTAATTGCACATGGGCTGAAAATACTCCAC
ACGGTTGTGTCACACGACCATGTGGCCCAAACCCTAGAATTCCTCTCTCAATTTGTCTTTTTCTT
CTTCCCCACC
Found at i:97589175 original size:5 final size:5
Alignment explanation
Indices: 97589100--97589132 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
97589090 AAGCCACCCT
97589100 TTTTA TTTTA TTTTA TTTTA -TTTA TTATTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTT
97589133 GTTAAATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 17 0.65
6 5 0.19
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:97589300 original size:3 final size:3
Alignment explanation
Indices: 97589292--97589317 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
97589282 ATCATTGAGT
97589292 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
97589318 TCGTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:97592187 original size:44 final size:44
Alignment explanation
Indices: 97592120--97592240 Score: 179
Period size: 44 Copynumber: 2.8 Consensus size: 44
97592110 TGGTGATGAT
* *
97592120 CACAGACAGATTTCAGAATATGGAAGCAAAAAAGGAAATGACCA
1 CACACACAGATTTGAGAATATGGAAGCAAAAAAGGAAATGACCA
*
97592164 CACACACAGATTTGAGAATATGGAAGCAAAAAAGGAAATGATCA
1 CACACACAGATTTGAGAATATGGAAGCAAAAAAGGAAATGACCA
* * * *
97592208 GAAACACAGATTTGAGAATTTGAAAGCAAAAAA
1 CACACACAGATTTGAGAATATGGAAGCAAAAAA
97592241 CAAACAGTGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.51, C:0.13, G:0.20, T:0.16
Consensus pattern (44 bp):
CACACACAGATTTGAGAATATGGAAGCAAAAAAGGAAATGACCA
Found at i:97592253 original size:52 final size:52
Alignment explanation
Indices: 97592197--97592343 Score: 240
Period size: 52 Copynumber: 2.8 Consensus size: 52
97592187 AAGCAAAAAA
*
97592197 GGAAATGATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAACAAACAGT
1 GGAAATGATCAGAAACACAGGTTTGAGAATTTGAAAGCAAAAAACAAACAGT
* *
97592249 GGAAATGATCAGAAACACAGGTTTGAGAATTTGAAAGCAAAAAGCAAAGAGT
1 GGAAATGATCAGAAACACAGGTTTGAGAATTTGAAAGCAAAAAACAAACAGT
* * *
97592301 GGAAATGATGAGAAACACAGGTTTGAGAACTTGGAAGCAAAAA
1 GGAAATGATCAGAAACACAGGTTTGAGAATTTGAAAGCAAAAA
97592344 CACTTTGGAT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 89 1.00
ACGTcount: A:0.49, C:0.10, G:0.24, T:0.17
Consensus pattern (52 bp):
GGAAATGATCAGAAACACAGGTTTGAGAATTTGAAAGCAAAAAACAAACAGT
Found at i:97594125 original size:94 final size:93
Alignment explanation
Indices: 97593812--97594302 Score: 601
Period size: 94 Copynumber: 5.3 Consensus size: 93
97593802 CGCTGTCACC
* * * *
97593812 TTTTTATTATTTTTATTATTG-ATAATTAAGTATGAAAAGCCTTCACCACTTTTGCTAGTGGGAT
1 TTTTTATTATTTTTATGA-TGAATAATTAATTAT--CAAGTCTTCACCACTTTTGCTAGTGGGAT
*
97593876 AGGTATTGTTGATGAATT-CTTCACGTTGTTA
63 AGGTATTGTTGATGAATTAC-TCAAGTTGTTA
* *
97593907 TTTTT-TTATTATTT-TTATGAATAATTAATTATCAAGTCTTCATCAC-TTTGCTAGTGGGATAG
1 TTTTTATTATT-TTTATGATGAATAATTAATTATCAAGTCTTCACCACTTTTGCTAGTGGGATAG
*
97593969 GTATTGTTGATGAATT-CTTCACGTTGTTA
65 GTATTGTTGATGAATTAC-TCAAGTTGTTA
*
97593998 ----T-TT-TTTTTATGATGAATAATTAATTATCAAGTCTTCACCACTTTTGATAGTGGGATAGG
1 TTTTTATTATTTTTATGATGAATAATTAATTATCAAGTCTTCACCACTTTTGCTAGTGGGATAGG
*
97594057 TATTGTTGATGAATTACTCAAGTTTTTA
66 TATTGTTGATGAATTACTCAAGTTGTTA
*
97594085 TTTTTTATTATTTTTATGATGAATAATTAATTATCAAGTCTTCACCACTTTTGATAGTGGGATAG
1 -TTTTTATTATTTTTATGATGAATAATTAATTATCAAGTCTTCACCACTTTTGCTAGTGGGATAG
*
97594150 GTATTGTTGATGAATTACTCAAGTTTTTA
65 GTATTGTTGATGAATTACTCAAGTTGTTA
* * * *
97594179 TTTTTATTATTTTTATGATGAATAATTAATTATCAAGAGTTTTCACCACTTTCGCTACTGGGACA
1 TTTTTATTATTTTTATGATGAATAATTAATTATC-A-AGTCTTCACCACTTTTGCTAGTGGGATA
* * * * * *
97594244 GGCATCGTTGATGAATTATTGATGCTGTTA
64 GGTATTGTTGATGAATTACTCAAGTTGTTA
*
97594274 CTTTTTACTATTTTTATGATGAATAATTA
1 -TTTTTATTATTTTTATGATGAATAATTA
97594303 CGTATGATGA
Statistics
Matches: 359, Mismatches: 22, Indels: 29
0.88 0.05 0.07
Matches are distributed among these distances:
85 3 0.01
86 32 0.09
87 43 0.12
88 1 0.00
91 45 0.13
92 12 0.03
93 38 0.11
94 104 0.29
95 54 0.15
96 27 0.08
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.47
Consensus pattern (93 bp):
TTTTTATTATTTTTATGATGAATAATTAATTATCAAGTCTTCACCACTTTTGCTAGTGGGATAGG
TATTGTTGATGAATTACTCAAGTTGTTA
Found at i:97594185 original size:178 final size:182
Alignment explanation
Indices: 97593815--97594302 Score: 596
Period size: 189 Copynumber: 2.7 Consensus size: 182
97593805 TGTCACCTTT
* * * * *
97593815 TTATTATTTTTATTATTG-ATAATTAAGTATGAAAAGCCTTCACCACTTTTGCTAGTGGGATAGG
1 TTATTATTTTTATGA-TGAATAATTAATTATCAAGAGTCTTCACCACTTTTGCTAGTGGGATAGG
*
97593879 TATTGTTGATGAATT-CTTCACGTTGTTATTTTTTTATTA-TTTT-T-ATGAATAATTAATTATC
65 TATTGTTGATGAATTAC-TCAAGTTGTTA-TTTTTTATTATTTTTATGATGAATAATTAATTATC
* * *
97593940 AAGTCTTCATCACTTTGCTAGTGGGATAGGTATTGTTGATGAATTCTTCACGTTG
128 AAGTCTTCACCACTTTGATAGTGGGATAGGTATTGTTGATGAATTCTTCAAGTTG
* *
97593995 TTATTTTTTTTATGATGAATAATTAATTATC-A-AGTCTTCACCACTTTTGATAGTGGGATAGGT
1 TTATTATTTTTATGATGAATAATTAATTATCAAGAGTCTTCACCACTTTTGCTAGTGGGATAGGT
*
97594058 ATTGTTGATGAATTACTCAAGTTTTTATTTTTTATTATTTTTATGATGAATAATTAATTATCAAG
66 ATTGTTGATGAATTACTCAAGTTGTTATTTTTTATTATTTTTATGATGAATAATTAATTATCAAG
*
97594123 TCTTCACCACTTTTGATAGTGGGATAGGTATTGTTGATGAATTAC-TCAAGTTTTTATTT
131 TCTTCACCAC-TTTGATAGTGGGATAGGTATTGTTGATGAATT-CTTCAAG------TTG
* * * * *
97594182 TTATTATTTTTATGATGAATAATTAATTATCAAGAGTTTTCACCACTTTCGCTACTGGGACAGGC
1 TTATTATTTTTATGATGAATAATTAATTATCAAGAGTCTTCACCACTTTTGCTAGTGGGATAGGT
* * * * * * *
97594247 ATCGTTGATGAATTATTGATGCTGTTACTTTTTACTATTTTTATGATGAATAATTA
66 ATTGTTGATGAATTACTCAAGTTGTTATTTTTTATTATTTTTATGATGAATAATTA
97594303 CGTATGATGA
Statistics
Matches: 266, Mismatches: 27, Indels: 21
0.85 0.09 0.07
Matches are distributed among these distances:
177 10 0.04
178 56 0.21
179 5 0.02
180 53 0.20
181 35 0.13
182 1 0.00
187 32 0.12
188 1 0.00
189 73 0.27
ACGTcount: A:0.28, C:0.10, G:0.16, T:0.47
Consensus pattern (182 bp):
TTATTATTTTTATGATGAATAATTAATTATCAAGAGTCTTCACCACTTTTGCTAGTGGGATAGGT
ATTGTTGATGAATTACTCAAGTTGTTATTTTTTATTATTTTTATGATGAATAATTAATTATCAAG
TCTTCACCACTTTGATAGTGGGATAGGTATTGTTGATGAATTCTTCAAGTTG
Found at i:97595878 original size:6 final size:6
Alignment explanation
Indices: 97595869--97595903 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
97595859 CAGTAGTAGT
*
97595869 AATAAA AATAAA AATAAA AATAAA AATAAT AATAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAA
97595904 TAATGATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AATAAA
Found at i:97595904 original size:6 final size:6
Alignment explanation
Indices: 97595868--97595927 Score: 57
Period size: 6 Copynumber: 10.0 Consensus size: 6
97595858 ACAGTAGTAG
* * * * * *
97595868 TAATAA AAATAA AAATAA AAATAA AAATAA TAATAA TAATGA TATTAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
*
97595916 TAATAG TAATAA
1 TAATAA TAATAA
97595928 AACAGAGAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.28
Consensus pattern (6 bp):
TAATAA
Found at i:97596079 original size:3 final size:3
Alignment explanation
Indices: 97596073--97596200 Score: 84
Period size: 3 Copynumber: 42.7 Consensus size: 3
97596063 ATAGTTGTAG
* * * * * * *
97596073 TAA TAA TAA TAG TAA GAA AAA TAG TGA TAA T-A TAA CAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
97596120 T-A TAA CAA -AA TAA TAA TAA TAG TCACG GAGA TGA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-A-A TA-A TAA TAA TAA TAA TAA
97596166 TAA TAA TAA TAA TAA TAA TAA TATA TAA TAA -AA TA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA
97596201 TAAACAACAA
Statistics
Matches: 97, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
2 8 0.08
3 83 0.86
4 5 0.05
5 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:97596117 original size:20 final size:21
Alignment explanation
Indices: 97596078--97596117 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
97596068 TGTAGTAATA
*
97596078 ATAATAGTAAGAAAAATAGTG
1 ATAATAGTAACAAAAATAGTG
*
97596099 ATAATA-TAACAATAATAGT
1 ATAATAGTAACAAAAATAGT
97596118 AATATAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (21 bp):
ATAATAGTAACAAAAATAGTG
Found at i:97596120 original size:17 final size:16
Alignment explanation
Indices: 97596099--97596137 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
97596089 AAAAATAGTG
97596099 ATAATATAACAATAATA
1 ATAATATAACAA-AATA
*
97596116 GTAATATAACAAAATA
1 ATAATATAACAAAATA
97596132 ATAATA
1 ATAATA
97596138 ATAGTCACGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (16 bp):
ATAATATAACAAAATA
Found at i:97596973 original size:12 final size:12
Alignment explanation
Indices: 97596956--97596980 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97596946 TTGGGTTAGT
97596956 GTTTTGGGCTAA
1 GTTTTGGGCTAA
97596968 GTTTTGGGCTAA
1 GTTTTGGGCTAA
97596980 G
1 G
97596981 GCTTTTTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.36, T:0.40
Consensus pattern (12 bp):
GTTTTGGGCTAA
Found at i:97597233 original size:44 final size:43
Alignment explanation
Indices: 97597169--97597254 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 43
97597159 TGAGTTCTTG
*
97597169 ATCTGCTTCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTTCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
*
97597212 ATCTGCTGTCTTCAA-CTTGTTCCTTATAAACACAGGGATGCCA
1 ATCTGCT-TCTTCAATC-TGTTCCCTATAAACACAGGGATGCCA
97597255 TGCTGAAATC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
43 8 0.21
44 31 0.79
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (43 bp):
ATCTGCTTCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:97597903 original size:206 final size:205
Alignment explanation
Indices: 97597306--97598095 Score: 1200
Period size: 207 Copynumber: 3.9 Consensus size: 205
97597296 CAGATTTATT
* * * * * * *
97597306 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
* * * * *
97597371 GTGAAAAGCCAAATCAACTATG-ATTCGATTTGCTCCTTGTAAGCATAAGGATGCCAAACTATCT
66 GTG-AAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
* *
97597435 TGGATCCGCTTCAGCATAAACATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
130 TGGATCCGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
*
97597500 AATATGCCAAA
195 AAGATGCCAAA
*
97597511 CTTCGATTCGTTCTCTG--AATACAGAGACGACAAATCATCTTAGATTTGC-TCATCATAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
*
97597573 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCC-AACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
97597637 GGATCTGCTTCAG--TGAAATCGTCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGT
131 GGATCCGCTTCAGCAT-AAA-CATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGT
97597700 GAAGATGCCAAA
194 GAAGATGCCAAA
*
97597712 CTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
*
97597777 GTGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGA-TTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
* * *
97597842 TGGATCTGCTTCAGCGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGT
130 TGGATCCGCTTCAGC-ATAAACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGT
97597906 GAAGATGCCAAAA
194 GAAGATGCC-AAA
* * * *
97597919 CTTCGATTCGTTCTCCGACGATACAAAGACGACAAATCATCTTAGATTTGCTTCATCTTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
97597984 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAAACCATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCC-AAACCATCT
*
97598049 TGGATCCGCTTCAGCATAAACATCTGAAGGCAAGATCTGCTATGTGT
130 TGGATCCGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTGT
97598096 GGCCTATTAC
Statistics
Matches: 537, Mismatches: 34, Indels: 26
0.90 0.06 0.04
Matches are distributed among these distances:
199 1 0.00
200 3 0.01
201 105 0.20
202 41 0.08
203 62 0.12
204 40 0.07
205 42 0.08
206 100 0.19
207 143 0.27
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (205 bp):
CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCCGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAA
Found at i:97610655 original size:13 final size:15
Alignment explanation
Indices: 97610625--97610655 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97610615 TTCCAGATTT
97610625 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
97610640 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
97610655 T
1 T
97610656 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:97615288 original size:2 final size:2
Alignment explanation
Indices: 97615281--97615320 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
97615271 TTTGGGATAA
*
97615281 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97615321 TTATTATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:97616413 original size:13 final size:14
Alignment explanation
Indices: 97616383--97616507 Score: 53
Period size: 14 Copynumber: 9.0 Consensus size: 14
97616373 TTAGGAAACG
97616383 TACATAAAAATATA
1 TACATAAAAATATA
*
97616397 TACATAAAAA-ATT
1 TACATAAAAATATA
97616410 TACA-ACAATAATATA
1 TACATA-AA-AATATA
* ** *
97616425 -AAATAATGATATG
1 TACATAAAAATATA
97616438 TACA-AAAAATATA
1 TACATAAAAATATA
* *
97616451 TATATATATATATATA
1 TACATA-A-AAATATA
* * *
97616467 TATATATATATATA
1 TACATAAAAATATA
* * * *
97616481 TATATATACATATG
1 TACATAAAAATATA
97616495 TACAT-AAAATATA
1 TACATAAAAATATA
97616508 CACTAATATA
Statistics
Matches: 84, Mismatches: 19, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
12 1 0.01
13 26 0.31
14 41 0.49
15 4 0.05
16 12 0.14
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (14 bp):
TACATAAAAATATA
Found at i:97616451 original size:2 final size:2
Alignment explanation
Indices: 97616446--97616493 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
97616436 TGTACAAAAA
97616446 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
97616488 AC AT AT
1 AT AT AT
97616494 GTACATAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97616498 original size:8 final size:8
Alignment explanation
Indices: 97616450--97616500 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
97616440 CAAAAAATAT
*
97616450 ATATATAT
1 ATATATAC
*
97616458 ATATATAT
1 ATATATAC
*
97616466 ATATATAT
1 ATATATAC
*
97616474 ATATATAT
1 ATATATAC
97616482 ATATATAC
1 ATATATAC
*
97616490 ATATGTAC
1 ATATATAC
97616498 ATA
1 ATA
97616501 AAATATACAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (8 bp):
ATATATAC
Found at i:97616533 original size:15 final size:15
Alignment explanation
Indices: 97616515--97616566 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
97616505 ATACACTAAT
97616515 ATAATAATAGTTATA
1 ATAATAATAGTTATA
**
97616530 ATAATAATAGCAATA
1 ATAATAATAGTTATA
* *
97616545 GTAATAAT--TTGTA
1 ATAATAATAGTTATA
97616558 ATAATAATA
1 ATAATAATA
97616567 TATACACAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 9 0.31
15 20 0.69
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (15 bp):
ATAATAATAGTTATA
Found at i:97618066 original size:62 final size:62
Alignment explanation
Indices: 97617969--97618087 Score: 188
Period size: 62 Copynumber: 1.9 Consensus size: 62
97617959 GTAGATTTTG
97617969 AAAATACCTCGATATGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAA
1 AAAATACCTCGATATGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAA
* *
97618031 AAAATACCTCCG-TGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AAAATACCT-CGATATGTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
97618088 TTTTTTTTGA
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
62 47 0.89
63 6 0.11
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (62 bp):
AAAATACCTCGATATGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAA
Found at i:97618247 original size:90 final size:90
Alignment explanation
Indices: 97618094--97618279 Score: 234
Period size: 90 Copynumber: 2.1 Consensus size: 90
97618084 GATTTTTTTT
* * *
97618094 TTGAAAGACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAC
97618159 GAGTCGA-TTTTTTGA-AAGGCAGAAA
66 GAGTCGATTTTTTTGACAA--CAGAAA
* * ** * *
97618184 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
*
97618248 CGAGTTGATTTTTTTGACAACAGAAA
65 CGAGTCGATTTTTTTGACAACAGAAA
97618274 TTGAAA
1 TTGAAA
97618280 TTACCTCGGC
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
89 2 0.02
90 71 0.86
91 8 0.10
92 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (90 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAC
GAGTCGATTTTTTTGACAACAGAAA
Found at i:97618317 original size:74 final size:74
Alignment explanation
Indices: 97618194--97618666 Score: 265
Period size: 74 Copynumber: 5.9 Consensus size: 74
97618184 TTGAAAAACG
* *
97618194 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAATTACCTCGGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
97618259 TTTTGACAACA
64 TTTTGACAACA
* *
97618270 GAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTT
1 GAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
97618335 TTGA-AAGGCA
66 TTGACAA--CA
** ** * * * * *
97618345 GAAATTAAAAAACGGAAATTGAAAATACCTCG-G-CGTGTGACCTGAGGCTCAACTCGCCTCTCG
1 GAAATT--------GAAATT--ACCT-CGGCGTGTCCTGAG-GCTCA-ACTC-A----CCTCTCG
97618408 CAATACGAGTTGATTTTTTTGACAACA
48 CAATACGAGTTGATTTTTTTGACAACA
* * *
97618435 GAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTCGATTTTT
1 GAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
*
97618500 TTGA-AAGGTA
66 TTGACAA--CA
** * * * * * * *
97618510 GAAATTGAAAAACGGAAATTGAAAATAC--CTTGGCGTGTGACCTGAGACTCAACTCGCCGCTCG
1 GAAATT--------GAAATT--ACCT-CGGCGTGTCCTGAG-GCTCA-ACTC-A----CCTCTCG
97618573 CAATACGAGTTGATTTTTTTGACAACA
48 CAATACGAGTTGATTTTTTTGACAACA
* * *
97618600 GAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
97618665 TT
66 TT
97618667 TTGAAAGGCA
Statistics
Matches: 300, Mismatches: 51, Indels: 94
0.67 0.11 0.21
Matches are distributed among these distances:
73 4 0.01
74 93 0.31
75 15 0.05
76 23 0.08
78 2 0.01
79 11 0.04
80 11 0.04
81 11 0.04
82 12 0.04
83 12 0.04
84 11 0.04
85 11 0.04
86 11 0.04
87 2 0.01
90 15 0.05
91 52 0.17
92 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (74 bp):
GAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTGACAACA
Found at i:97618666 original size:76 final size:75
Alignment explanation
Indices: 97618524--97618687 Score: 197
Period size: 74 Copynumber: 2.1 Consensus size: 75
97618514 TTGAAAAACG
** *
97618524 GAAATTGAAAATACCTTGGCGTGTGACCTGAGACTCAACTCGCCGCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGACTCAACTCACCGCTCGCAATACGAGTTGATTT
97618589 TTTTGACAA-CA
65 TTTTGA-AAGCA
* * * * *
97618600 GAAATTGAAATTACCTCAGCGTGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGACTCAACTCACCGCTCGCAATACGAGTTGA--TT
97618664 TTTTTGAAAGGCA
64 TTTTTGAAA-GCA
97618677 GAAATTGAAAA
1 GAAATTGAAAA
97618688 ACGGAAATTG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
74 31 0.41
75 2 0.03
76 30 0.40
77 12 0.16
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGACTCAACTCACCGCTCGCAATACGAGTTGATTTT
TTTGAAAGCA
Done.