Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 334 of 335
Found at i:97618760 original size:167 final size:165
Alignment explanation
Indices: 97618031--97618837 Score: 1303
Period size: 165 Copynumber: 4.8 Consensus size: 165
97618021 TGATTAAAAA
* * * * * *
97618031 AAAATACCTCCGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTT
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA---TTTTTTT
* * * * *
97618096 GAAAGACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATG
63 GACA-ACAGAAATTGAAATTACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATG
97618160 AGTCGA-TTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
124 AGTCGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
97618201 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
*
97618266 AACAGAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
*
97618331 TTTTTTGAAAGGCAGAAATTAAAAAACGGAAATTG
131 TTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
97618366 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
97618431 AACAGAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTCGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
*
97618496 TTTTTTGAAAGGTAGAAATTGAAAAACGGAAATTG
131 TTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* * *
97618531 AAAATACCTTGGCGTGTGACCTGAGACTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
97618596 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-
97618661 TTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
130 -TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
*
97618698 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
97618763 AATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
97618828 TTTTTTGAAA
131 TTTTTTGAAA
97618838 ATACCTCAGC
Statistics
Matches: 603, Mismatches: 30, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
163 2 0.00
164 36 0.06
165 329 0.55
166 19 0.03
167 168 0.28
170 49 0.08
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (165 bp):
AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
TTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
Found at i:97618831 original size:332 final size:330
Alignment explanation
Indices: 97618031--97618837 Score: 1303
Period size: 332 Copynumber: 2.4 Consensus size: 330
97618021 TGATTAAAAA
* * * * * *
97618031 AAAATACCTCCGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTT
1 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA---TTTTTTT
* * * * *
97618096 GAAAGACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATG
63 GACA-ACAGAAATTGAAATTACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATG
97618160 AGTCGA-TTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTG
124 AGTCGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTG
* * *
97618224 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCGG
189 AGACTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
97618289 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAATTAAA
254 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAATTAAA
97618354 AAACGGAAATTG
319 AAACGGAAATTG
*
97618366 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
97618431 AACAGAAATTGAAATTACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTCGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
* *
97618496 TTTTTTGAAAGGTAGAAATTGAAAAACGGAAATTGAAAATACCTTGGCGTGTGACCTGAGACTCA
131 TTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGACTCA
*
97618561 ACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCT
196 ACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCC
* *
97618626 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACG
261 TGAGGCTCAACTCACCTCTCGCAATATGAGTCGA--TTTTTTTGAAAGGCAGAAATTAAAAAACG
97618691 GAAATTG
324 GAAATTG
97618698 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
97618763 AATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
97618828 TTTTTTGAAA
131 TTTTTTGAAA
97618838 ATACCTCAGC
Statistics
Matches: 442, Mismatches: 26, Indels: 11
0.92 0.05 0.02
Matches are distributed among these distances:
328 2 0.00
329 35 0.08
330 157 0.36
331 19 0.04
332 180 0.41
335 49 0.11
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (330 bp):
AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
TTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGACTCA
ACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCC
TGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAATTAAAAAACGGA
AATTG
Found at i:97618833 original size:76 final size:75
Alignment explanation
Indices: 97618691--97618840 Score: 248
Period size: 74 Copynumber: 2.0 Consensus size: 75
97618681 TTGAAAAACG
*
97618691 GAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
97618756 TTTTGACAATA
65 TTTTGACAATA
* *
97618767 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
*
97618831 TTTGAAAATA
66 TTTGACAATA
97618841 CCTCAGCGCG
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
74 47 0.67
76 23 0.33
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTTGACAATA
Found at i:97618869 original size:61 final size:61
Alignment explanation
Indices: 97618771--97618892 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
97618761 ACAATAGAAA
* * *
97618771 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTT
*
97618832 TTGAAAATACCTCAGCGCGTCTTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTT
1 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTT
97618893 GAAACATACG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (61 bp):
TTGAAAATACCTCAGCGCGTCCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTT
Found at i:97618941 original size:137 final size:134
Alignment explanation
Indices: 97618695--97618973 Score: 402
Period size: 137 Copynumber: 2.0 Consensus size: 134
97618685 AAAACGGAAA
* * *
97618695 TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCGCGT-ACCTGAGGCTCAAATCACCTCTCGCAATACGAGTTGA-TTTTTT
* *
97618760 GACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
64 GAAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
97618825 GATTTTT
129 GA-TTTT
* *
97618832 TTGAAAATACCTCAGCGCGT-CTTGAGGCTCAAATCACCTCTCGCAATATGAGTTGA-TTTTTGA
1 TTGAAAATACCTCAGCGCGTACCTGAGGCTCAAATCACCTCTCGCAATACGAGTTGATTTTTTGA
97618895 AACATACGAAAAATTGACAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
66 AA-ATA-G--AAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
97618959 GTCGATTTT
126 GTCGATTTT
97618968 TTGAAA
1 TTGAAA
97618974 GGCAGAAATT
Statistics
Matches: 130, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
133 8 0.06
134 3 0.02
135 33 0.25
136 10 0.08
137 74 0.57
138 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (134 bp):
TTGAAAATACCTCAGCGCGTACCTGAGGCTCAAATCACCTCTCGCAATACGAGTTGATTTTTTGA
AAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA
TTTT
Found at i:97618966 original size:76 final size:76
Alignment explanation
Indices: 97618832--97618973 Score: 223
Period size: 76 Copynumber: 1.9 Consensus size: 76
97618822 GTTGATTTTT
* * *
97618832 TTGAAAATACCTCAGCGCGTCTTGAGGCTCAAATCACCTCTCGCAATATGAGTTGA-TTTTTGAA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
97618896 ACATACGAAAAA
66 ACATAC-AAAAA
* *
97618908 TTGACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
97618973 A
66 A
97618974 GGCAGAAATT
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
76 51 0.85
77 9 0.15
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (76 bp):
TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
ACATACAAAAA
Found at i:97619056 original size:90 final size:88
Alignment explanation
Indices: 97618905--97619077 Score: 233
Period size: 90 Copynumber: 1.9 Consensus size: 88
97618895 AACATACGAA
* **
97618905 AAATTGACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACAAGTCGATTTTTT
97618969 TGA-AAGGCAGAAATTGAAAAACGG
66 TGACAA--CAGAAATTGAAAAACGG
* ** *
97618993 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTTGCCTCTCGCAATACAAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACAAGTCGATTTT
97619058 TTTGACAACAGAAATTGAAA
64 TTTGACAACAGAAATTGAAA
97619078 TTACCTCAGC
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
88 21 0.28
90 43 0.58
91 8 0.11
92 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (88 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACAAGTCGATTTTTT
TGACAACAGAAATTGAAAAACGG
Found at i:97619073 original size:301 final size:300
Alignment explanation
Indices: 97618550--97619974 Score: 1591
Period size: 301 Copynumber: 4.7 Consensus size: 300
97618540 TGGCGTGTGA
* * * * *** *
97618550 CCTGAGACTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACA-ACAGAAATTGAAATTAC
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACAAAAATTGAAA-TAC
* *
97618614 CTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGA
65 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA--TTTTTTTGAAAGGCAGA
*
97618679 AATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAAT
128 AATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAAT
*
97618744 ACGAGTTGATTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
193 ACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
97618809 TCTCGCAATATGAGTTGATTTTTTTGAAAATACCTCAGCGCGT
258 TCTCGCAATATGAGTTGATTTTTTTGAAAATACCTCAGCGCGT
* *
97618852 CTTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTGAAACATACGAAAAATTGACAATA
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAC-AAAAATTGA-AATA
97618917 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTTTGAAAGGCAGAA
64 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAA
*
97618981 ATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTTGCCTCTCGCAATA
129 ATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATA
* *
97619046 CAAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCT
194 CGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
97619111 CTCGCAATATGAGTTGA-TTTTTTGAAAATACCTCAGCGCGT
259 CTCGCAATATGAGTTGATTTTTTTGAAAATACCTCAGCGCGT
97619152 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACGAAAAATTGATAATA
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAC-AAAAATTGA-AATA
97619217 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAA
64 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAA
*
97619282 ATTGGAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATA
129 ATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATA
* * **
97619347 CGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCGGCTTGTCCTGAGGCTCAACTCATTT
194 CGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
* * * *
97619412 CTCACAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGT
259 CTCGCAATATGAGTTG-ATTTT----------TTTGAAAATACCTCAGCGCGT
* * * *
97619465 CCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTG-AA-AGACAGAAATTGAAAATA
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAACATACAAAAATTG-AAATA
* * *
97619528 CCTCAGCATGTGAACC-GAGGCTTAACTCGCCTCTCGCAATATGA---G------TT-----G-A
64 CCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCA
* * * *
97619577 -ATATTG-AAAACAGAAATT-AAAATTACCTCGGCGTGT--CCCGAGGCTCAACTCACCTCTCGC
126 GAAATTGAAAAACGGAAATTGAAAA-TACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGC
* * * *
97619637 AATATGAGTTGA--TTTTTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACT
190 AATACGAGTTGATTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
** * *
97619700 CACCTCTCGCAACGTGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCGGCGTGT
254 CACCTCTCGCAATATGAGTTGA--TTTTT-------------TTGAAAATACCTCAGCGCGT
* *** *
97619762 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--TTTATA-ATAAATTGAAAAT
1 --CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACAAAAATTG-AAAT
* * *
97619824 ACCTCA-CTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT-AAA---AT
63 ACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCA-
* ** * * * * *
97619883 TAAATT-AAAAACAAAAATTGACAATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCA
126 GAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCA
*
97619945 ATATGAGTTGAATTTTTTTGA-AACAGAAAT
191 ATACGAGTTG-ATTTTTTTGACAACAGAAAT
97619975 AAAAACATTA
Statistics
Matches: 992, Mismatches: 69, Indels: 118
0.84 0.06 0.10
Matches are distributed among these distances:
292 7 0.01
293 55 0.06
294 39 0.04
295 34 0.03
296 25 0.03
297 41 0.04
298 9 0.01
299 36 0.04
300 133 0.13
301 314 0.32
302 39 0.04
303 7 0.01
304 57 0.06
305 5 0.01
307 58 0.06
308 12 0.01
309 1 0.00
310 7 0.01
311 18 0.02
312 4 0.00
313 83 0.08
314 8 0.01
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (300 bp):
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACAAAAATTGAAATACC
TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAAT
TGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACG
AGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTTTGAAAATACCTCAGCGCGT
Found at i:97619103 original size:164 final size:164
Alignment explanation
Indices: 97618832--97619137 Score: 438
Period size: 164 Copynumber: 1.9 Consensus size: 164
97618822 GTTGATTTTT
* **
97618832 TTGAAAATACCTCAGCGCGTCTTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAAATCACCTCTCGCAATACAAGTTGATTTTTGAAA
*
97618897 CATACGAAAAATTGACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
66 CATACGAAAAATTGACAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
97618962 GATTTTTTGAAAGGCAGAAATTGAAAAACGGAAA
131 GATTTTTTGAAAGGCAGAAATTGAAAAACGGAAA
* * * ** **
97618996 TTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTTGCCTCTCGCAATACAAGTTGATTTTTTT
1 TTGAAAATACCTCAGCGCGT--CCTGAGGCTCAAATCACCTCTCGCAATACAAGTTGATTTTTGA
* *
97619061 GACA-AC-AGAAATTGA-AATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
64 AACATACGAAAAATTGACAA-TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
97619123 GTTGATTTTTTGAAA
128 GTCGATTTTTTGAAA
97619138 ATACCTCAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
163 2 0.02
164 83 0.66
165 2 0.02
166 38 0.30
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (164 bp):
TTGAAAATACCTCAGCGCGTCCTGAGGCTCAAATCACCTCTCGCAATACAAGTTGATTTTTGAAA
CATACGAAAAATTGACAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
GATTTTTTGAAAGGCAGAAATTGAAAAACGGAAA
Found at i:97619115 original size:74 final size:75
Alignment explanation
Indices: 97618992--97619133 Score: 205
Period size: 74 Copynumber: 1.9 Consensus size: 75
97618982 TTGAAAAACG
* * **
97618992 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTTGCCTCTCGCAATACAAGTTGATTT
1 GAAATTGAAAATACCTCAGCATGT-ACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTT
97619057 TTTTGACAACA
65 TTTTGACAACA
* **
97619068 GAAATTGAAATTACCTCAGCATGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
97619132 TT
66 TT
97619134 GAAAATACCT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 38 0.64
76 21 0.36
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
TTTGACAACA
Found at i:97619165 original size:60 final size:59
Alignment explanation
Indices: 97619072--97619201 Score: 215
Period size: 60 Copynumber: 2.2 Consensus size: 59
97619062 ACAACAGAAA
* *
97619072 TTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 TTGAAAATACCTCAGCACGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
*
97619132 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 TTGAAAATACCTCAGCACGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
97619191 TTGAAACATAC
1 TTGAAA-ATAC
97619202 GAAAAATTGA
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
59 9 0.14
60 57 0.86
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (59 bp):
TTGAAAATACCTCAGCACGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
Found at i:97619240 original size:136 final size:136
Alignment explanation
Indices: 97618996--97619274 Score: 393
Period size: 136 Copynumber: 2.0 Consensus size: 136
97618986 AAAACGGAAA
* * ** **
97618996 TTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTTGCCTCTCGCAATACAAGTTGATTTTTTT
1 TTGAAAATACCTCAGCGCGT-ACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTGA
* * *
97619061 GACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
65 AACAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
97619126 GA-TTTT
130 GATTTTT
**
97619132 TTGAAAATACCTCAGCGCGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
1 TTGAAAATACCTCAGCGCGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTGAA
*
97619196 ACATACGAAAAATTGATAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
66 ACA-AC-AAAAATTGA-AATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
97619260 TCGATTTTT
128 TCGATTTTT
97619269 TTGAAA
1 TTGAAA
97619275 GGCAGAAATT
Statistics
Matches: 127, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
134 40 0.31
135 2 0.02
136 73 0.57
137 12 0.09
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (136 bp):
TTGAAAATACCTCAGCGCGTACCTGAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTGAA
ACAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCG
ATTTTT
Found at i:97619358 original size:91 final size:88
Alignment explanation
Indices: 97619205--97619375 Score: 254
Period size: 91 Copynumber: 1.9 Consensus size: 88
97619195 AACATACGAA
* *
97619205 AAATTGATAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTCGATTTTTT
97619270 TGA-AAGGCAGAAATTGGAAAACGG
66 TGACAA--CAGAAATTGGAAAACGG
* * *
97619294 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTCGATTTT
97619359 TTTGACAACAGAAATTG
64 TTTGACAACAGAAATTG
97619376 AAATTACCTC
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
89 21 0.28
90 9 0.12
91 42 0.57
92 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (88 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTCGATTTTTT
TGACAACAGAAATTGGAAAACGG
Found at i:97619457 original size:72 final size:74
Alignment explanation
Indices: 97619286--97619881 Score: 692
Period size: 72 Copynumber: 8.1 Consensus size: 74
97619276 GCAGAAATTG
* * * *
97619286 GAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAG
1 GAAAACAGAAATTGAAAATACCTCGGC-TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
97619351 TTGATTTTTTT
65 TTGA-TTTTTT
* * * * ** *
97619362 GACAACAGAAATTGAAATTACCTCGGCT-TGTCCTGAGGCTCAACTCATTTCTCACAATATGAGT
1 GAAAACAGAAATTGAAAATACCTCGGCTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
97619426 TGA-ATTTT
66 TGATTTTTT
* * * *
97619434 GAAAACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGT
1 GAAAACAGAAATTGAAAATACCTCGGCTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
97619498 TGATTTTTT
66 TGATTTTTT
* * * *
97619507 GAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTTAACTCGCCTCTCGCAATATGA
1 GAAA-ACAGAAATTGAAAATACCTCGGC-TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
97619572 GTTGA-ATATT
64 GTTGATTTTTT
*
97619582 GAAAACAGAAATT-AAAATTACCTCGGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 GAAAACAGAAATTGAAAA-TACCTCGGCTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
97619645 TTGA-TTTTT
65 TTGATTTTTT
* * * * **
97619654 GAAAAAAAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAACGTGAG
1 G-AAAACAGAAATTGAAAATACCTCGGCTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
97619718 TTGATTTTTTT
65 TTGA-TTTTTT
*
97619729 GAAAAAACAAAAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
1 G--AAAACAGAAATTGAAAATACCTCGGC-TGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
97619794 AGTTGATTTTTT
63 AGTTGATTTTTT
** * * * **
97619806 TTATA-ATAAATTGAAAATACCTC-ACTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAACAGAAATTGAAAATACCTCGGCTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
97619869 TGATTTTTT
66 TGATTTTTT
97619878 -AAAA
1 GAAAA
97619882 TTAAATTAAA
Statistics
Matches: 453, Mismatches: 54, Indels: 31
0.84 0.10 0.06
Matches are distributed among these distances:
71 2 0.00
72 148 0.33
73 70 0.15
74 92 0.20
75 16 0.04
76 82 0.18
77 6 0.01
78 37 0.08
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (74 bp):
GAAAACAGAAATTGAAAATACCTCGGCTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTT
Found at i:97619584 original size:148 final size:145
Alignment explanation
Indices: 97619286--97619974 Score: 735
Period size: 148 Copynumber: 4.6 Consensus size: 145
97619276 GCAGAAATTG
* * * *
97619286 GAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAG
1 GAAAACAGAAATTGAAAATACCTCGGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * **
97619351 TTGATTTTTTTGACAACAGAAATTGAAATTACCTCGGCT-TGTCCTGAGGCTCAACTCATTTCTC
64 TTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCTGTGACC-GAGGCTCAACTCACCTCTC
* *
97619415 ACAATATGAGTTGAATTTT
127 GCAATATGAGTTGAATATT
* * *
97619434 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCGGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
97619499 GATTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTTAACTCGCCTCTCG
66 GATTTTTTGAAA-ACAGAAATTGAAAATACCTCAGC-TGTG-ACCGAGGCTCAACTCACCTCTCG
97619564 CAATATGAGTTGAATATT
128 CAATATGAGTTGAATATT
97619582 GAAAACAGAAATT-AAAATTACCTCGGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAACAGAAATTGAAAA-TACCTCGGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
97619646 TGA-TTTTTGAAAAAAAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCG
65 TGATTTTTTG-AAAACAGAAATTGAAAATACCTCAGCTGTG-ACCGAGGCTCAACTCACCTCTCG
** * *
97619709 CAACGTGAGTTGATTTTTTT
128 CAATATGAGTTGA--ATATT
*
97619729 GAAAAAACAAAAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
1 G--AAAACAGAAATTGAAAATACCTCGGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATG
** * * *
97619794 AGTTGATTTTTTTTATA-ATAAATTGAAAATACCTCA-CTGTGACTTGAGGCTCAACTCACCTCT
62 AGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCTGTGAC-CGAGGCTCAACTCACCTCT
97619857 CGCAATATGAGTTGATTTTTTAAAATTAAATT
126 CGCAATATGAGTTG---------AA-T--ATT
* * * * *
97619889 AAAAACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCGGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
97619954 GAATTTTTTTG-AAACAGAAAT
66 G-A-TTTTTTGAAAACAGAAAT
97619975 AAAAACATTA
Statistics
Matches: 461, Mismatches: 49, Indels: 52
0.82 0.09 0.09
Matches are distributed among these distances:
145 43 0.09
146 53 0.11
147 35 0.08
148 125 0.27
149 28 0.06
150 54 0.12
151 38 0.08
152 5 0.01
156 35 0.08
157 3 0.01
158 39 0.08
159 1 0.00
160 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (145 bp):
GAAAACAGAAATTGAAAATACCTCGGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGAAAACAGAAATTGAAAATACCTCAGCTGTGACCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGAATATT
Found at i:97619854 original size:223 final size:225
Alignment explanation
Indices: 97619294--97619967 Score: 855
Period size: 223 Copynumber: 3.0 Consensus size: 225
97619284 TGGAAAACGG
* *
97619294 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTT
* * ** *
97619359 TTTGACAACAGAAATTGAAATTACCTCGGCT-TGTCCTGAGGCTCAACTCATTTCTCACAATATG
66 TTT-AAAACAGAAATTGAAAATACCTCGGCTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
97619423 AGTTGAATTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTT
130 AGTTGATTTTTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
* *
97619487 GCAATATGAGTTGA-TTTTTTG-AAAGACAG
195 GCAATATGAGTTGATTTTTTTGAAAAAACAA
* * * * * *
97619516 AAATTGAAAATACCTCAGCATGTGAACCGAGGCTTAACTCGCCTCTCGCAATATGAGTTGA-ATA
1 AAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTT
* *
97619580 TTGAAAACAGAAATT-AAAATTACCTCGGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
66 TTTAAAACAGAAATTGAAAA-TACCTCGGCTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
97619643 AGTTGATTTTTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
130 AGTTGATTTTTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
**
97619708 GCAACGTGAGTTGATTTTTTTGAAAAAACAA
195 GCAATATGAGTTGATTTTTTTGAAAAAACAA
*
97619739 AAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTT
* * * * * *
97619804 TTTTATA-ATAAATTGAAAATACCTC-ACTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGA
66 TTTAAAACAGAAATTGAAAATACCTCGGCTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
97619867 GTTGATTTTTTAAAATTAAATTAAAAACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCA
131 GTTGA---TTT----TT-GA--AAAAA-AGAAATTGA-AATTACCTCAGCGTGTCCCGAGGCTCA
97619931 ACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAA
184 ACTCACCTCTCGCAATATGAGTTG-ATTTTTTTGAAA
97619968 CAGAAATAAA
Statistics
Matches: 389, Mismatches: 42, Indels: 29
0.85 0.09 0.06
Matches are distributed among these distances:
219 3 0.01
220 60 0.15
221 65 0.17
222 63 0.16
223 111 0.29
224 9 0.02
226 3 0.01
230 2 0.01
231 1 0.00
233 5 0.01
234 53 0.14
235 14 0.04
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (225 bp):
AAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTT
TTTAAAACAGAAATTGAAAATACCTCGGCTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTGAAAAAACAA
Found at i:97627912 original size:12 final size:12
Alignment explanation
Indices: 97627892--97627927 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
97627882 TGAGATATGA
*
97627892 AATGAATGAATG
1 AATGCATGAATG
*
97627904 GATGCATGAATG
1 AATGCATGAATG
97627916 AATGCATGAATG
1 AATGCATGAATG
97627928 TCAAATGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:97629932 original size:28 final size:29
Alignment explanation
Indices: 97629876--97629932 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
97629866 ACACAATATG
* *
97629876 GTATTTAAAATATATATATATATATAATA
1 GTATTTAAAATATATACATATAGATAATA
97629905 GTATTTAAGAATATATACATA-AGA-AATA
1 GTATTTAA-AATATATACATATAGATAATA
97629933 TATAACTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.16
29 10 0.40
30 11 0.44
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.39
Consensus pattern (29 bp):
GTATTTAAAATATATACATATAGATAATA
Found at i:97629973 original size:39 final size:39
Alignment explanation
Indices: 97629887--97629973 Score: 104
Period size: 39 Copynumber: 2.2 Consensus size: 39
97629877 TATTTAAAAT
* * *
97629887 ATATATATATATATAATAGTATTTAAGAATATATACATA
1 ATATATATATATATAATAGCATTAAAAAATATATACATA
* * *
97629926 AGAAATATATA-ACTAATGGCATTAAAAAATATATACATA
1 ATATATATATATA-TAATAGCATTAAAAAATATATACATA
97629965 ATATATATA
1 ATATATATA
97629974 AAATACCTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.03
39 38 0.97
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.36
Consensus pattern (39 bp):
ATATATATATATATAATAGCATTAAAAAATATATACATA
Found at i:97630766 original size:53 final size:54
Alignment explanation
Indices: 97630703--97630808 Score: 162
Period size: 53 Copynumber: 2.0 Consensus size: 54
97630693 TTATGTACCA
* * *
97630703 AAATGGGAAAAATGA-AGAAATCTAGGTACCAATTTAAGGATTAGGC-ATTTTTG
1 AAATGGGAAAAATGACA-AAATCTAGATACCAATTCAAGGATTAAGCAATTTTTG
97630756 AAATGGGAAAAATGACAAAATCTAGATACCAATTCAAGGATTAAGCAATTTTT
1 AAATGGGAAAAATGACAAAATCTAGATACCAATTCAAGGATTAAGCAATTTTT
97630809 TTAAAAAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
53 41 0.85
54 7 0.15
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.27
Consensus pattern (54 bp):
AAATGGGAAAAATGACAAAATCTAGATACCAATTCAAGGATTAAGCAATTTTTG
Found at i:97635767 original size:46 final size:44
Alignment explanation
Indices: 97635708--97635822 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
97635698 ACAGGACAGA
* *
97635708 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
97635754 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
97635798 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
97635823 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:97635803 original size:44 final size:45
Alignment explanation
Indices: 97635708--97635841 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
97635698 ACAGGACAGA
* *
97635708 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
97635754 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
97635798 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
97635842 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:97643148 original size:44 final size:45
Alignment explanation
Indices: 97643058--97643173 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 45
97643048 ACAGAACAAA
*
97643058 AATGAGCCATGTAAGTCCATATTAGAAATATGACTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGACATTGGAGACAGG
* * *
97643104 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGACATTGGAGACAGG
* ** *
97643148 AATAATTCATGTAAGTCCATGTTAAA
1 AATGAGCCATGTAAGTCCATATTAAA
97643174 GACATGGCAT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 36 0.61
45 1 0.02
46 22 0.37
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGACATTGGAGACAGG
Found at i:97646114 original size:20 final size:20
Alignment explanation
Indices: 97646053--97646115 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
97646043 ATTTCTTATG
97646053 TATATATTCTTAAATACTATTA
1 TATATATT-TTAAATACTA-TA
* * *
97646075 TATATACATATATATA-TATA
1 TATATA-TTTTAAATACTATA
97646095 TATATATTTTAAATACTATA
1 TATATATTTTAAATACTATA
97646115 T
1 T
97646116 TGTGTATATA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
19 6 0.18
20 13 0.39
21 2 0.06
22 11 0.33
23 1 0.03
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.49
Consensus pattern (20 bp):
TATATATTTTAAATACTATA
Found at i:97656558 original size:90 final size:89
Alignment explanation
Indices: 97656373--97656544 Score: 208
Period size: 90 Copynumber: 1.9 Consensus size: 89
97656363 GCTGAGGTAA
*
97656373 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATAGCGAGAGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATAGCGAGAGGCGAGTTGAGCCTCAGG-CACA
* *
97656438 CACCGAGGTATTTTTAATTTCCGTT
65 CACCGAGGTATTGTCAATTTCCGTT
* * * *
97656463 TTTCAATTTCTGCCTT-TC-AAAAAATCGACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATAGCGAGAGGCGAGTTGAGCCTCAGGCAC
* *
97656525 ACGCTGAGGTA-TGTCAATTT
64 ACACCGAGGTATTGTCAATTT
97656545 TTCGTATGTT
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
87 7 0.10
88 11 0.15
90 49 0.69
91 2 0.03
92 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (89 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATAGCGAGAGGCGAGTTGAGCCTCAGGCACAC
ACCGAGGTATTGTCAATTTCCGTT
Found at i:97656646 original size:61 final size:64
Alignment explanation
Indices: 97656557--97656744 Score: 247
Period size: 61 Copynumber: 2.9 Consensus size: 64
97656547 CGTATGTTTC
*
97656557 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGG-TTT-TT-TCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGATTTATTATCAA
97656618 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG--ATTT--ATTAT
97656683 CAA
62 CAA
* ** *
97656686 AAAAATCAACTCGTATTGCGAGAGACGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGG-ATTT
97656745 TCAATTTCCA
Statistics
Matches: 112, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
61 51 0.46
64 3 0.03
67 2 0.02
68 42 0.38
69 4 0.04
70 10 0.09
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (64 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGATTTATTATCAA
Found at i:97656723 original size:68 final size:69
Alignment explanation
Indices: 97656614--97656750 Score: 213
Period size: 68 Copynumber: 2.0 Consensus size: 69
97656604 TGAGGTTTTT
** *
97656614 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCA
1 TCAAAAAAATCAACTCATATTGCGAGAGACGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCA
97656678 ATTA
66 ATTA
* *
97656682 TCAAAAAAATCAACTCGTATTGCGAGAGACGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGACGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTC
97656747 AATT
65 AATT
97656751 TCCATTTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
68 42 0.68
70 20 0.32
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (69 bp):
TCAAAAAAATCAACTCATATTGCGAGAGACGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCA
ATTA
Found at i:97656889 original size:74 final size:75
Alignment explanation
Indices: 97656778--97657069 Score: 480
Period size: 74 Copynumber: 3.9 Consensus size: 75
97656768 ACCTTTCAAA
* * * *
97656778 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCTGAGGTAATTTCAAT
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
97656842 TTCTGTTGTC
66 TTCTGTTGTC
* *
97656852 AAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGGTAATTTCAA
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCAA
97656917 TTTCTGTTGTC
65 TTTCTGTTGTC
*
97656928 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGACTCAGG-ACACGCCGAGGTAATTTCAAT
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
97656992 TTCTGTTGTC
66 TTCTGTTGTC
*
97657002 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCAA
97657067 TTT
65 TTT
97657070 TCGTTTTTCA
Statistics
Matches: 203, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
74 111 0.55
76 92 0.45
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (75 bp):
AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
TTCTGTTGTC
Found at i:97657049 original size:150 final size:150
Alignment explanation
Indices: 97656778--97657069 Score: 512
Period size: 150 Copynumber: 1.9 Consensus size: 150
97656768 ACCTTTCAAA
* * *
97656778 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGACTCAAGACACGCCGAGGTAATTTCAATT
*
97656843 TCTGTTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGG
66 TCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTCGAGCCTCAGGTCACACGCCGAGG
97656908 TAATTTCAATTTCTGTTGTC
131 TAATTTCAATTTCTGTTGTC
* *
97656928 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGACTCAGGACACGCCGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGACTCAAGACACGCCGAGGTAATTTCAATT
*
97656993 TCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGG
66 TCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTCGAGCCTCAGGTCACACGCCGAGG
*
97657058 TATTTTCAATTT
131 TAATTTCAATTT
97657070 TCGTTTTTCA
Statistics
Matches: 134, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
150 134 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (150 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGACTCAAGACACGCCGAGGTAATTTCAATT
TCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTCGAGCCTCAGGTCACACGCCGAGG
TAATTTCAATTTCTGTTGTC
Found at i:97657171 original size:91 final size:90
Alignment explanation
Indices: 97656985--97657160 Score: 230
Period size: 91 Copynumber: 1.9 Consensus size: 90
97656975 GCCGAGGTAA
* *
97656985 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCCTCAGGTCACA
*
97657050 CGCCGAGGTATTTTCAATTTTCGTT
66 CGCCGAGCTATTTTCAATTTTCGTT
* * *
97657075 TTTCAATTTCTGCCTT-TCAAAAAAATCGACTCATATTGCGAAAGGTGAGTTGAGCCT-TGGCTC
1 TTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCCTCAGG-TC
* * *
97657138 ACGCGCTGAGCTGTTTTCAATTT
63 ACACGCCGAGCTATTTTCAATTT
97657161 CTATCTTTCA
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
90 14 0.19
91 58 0.78
92 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (90 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCCTCAGGTCACA
CGCCGAGCTATTTTCAATTTTCGTT
Found at i:97658578 original size:32 final size:30
Alignment explanation
Indices: 97658540--97658602 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 30
97658530 ATTTCTTATG
97658540 TATATATTTTAAATACTATATATATATATATA
1 TATATATTTTAAATAC-ATAT-TATATATATA
*
97658572 TATATATTTTAAATACATATTATGTATATA
1 TATATATTTTAAATACATATTATATATATA
97658602 T
1 T
97658603 TATTATTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 10 0.33
31 4 0.13
32 16 0.53
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (30 bp):
TATATATTTTAAATACATATTATATATATA
Found at i:97658617 original size:24 final size:24
Alignment explanation
Indices: 97658572--97658618 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
97658562 TATATATATA
*
97658572 TATATATTTTAAATACATATTATG
1 TATATATTTTAAATACAAATTATG
*
97658596 TATATATTATT-ATTACAAATTAT
1 TATATATT-TTAAATACAAATTAT
97658619 TACTATTGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (24 bp):
TATATATTTTAAATACAAATTATG
Found at i:97659987 original size:15 final size:17
Alignment explanation
Indices: 97659969--97660005 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
97659959 AAAGAAAAAG
97659969 AAAAACCT-A-CCCCAA
1 AAAAACCTAACCCCCAA
97659984 AAAAACCTAACCCCCAA
1 AAAAACCTAACCCCCAA
97660001 AAAAA
1 AAAAA
97660006 AAGAAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 8 0.40
16 1 0.05
17 11 0.55
ACGTcount: A:0.59, C:0.35, G:0.00, T:0.05
Consensus pattern (17 bp):
AAAAACCTAACCCCCAA
Found at i:97659988 original size:1 final size:1
Alignment explanation
Indices: 97659938--97659973 Score: 54
Period size: 1 Copynumber: 36.0 Consensus size: 1
97659928 AACCTAACCC
* *
97659938 AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
97659974 CCTACCCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:97660830 original size:19 final size:18
Alignment explanation
Indices: 97660806--97660843 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
97660796 ATCATATGTG
*
97660806 TATATTGTATATATTATAT
1 TATATTATATATA-TATAT
97660825 TATATTATATATATATAT
1 TATATTATATATATATAT
97660843 T
1 T
97660844 CTTAATGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
TATATTATATATATATAT
Found at i:97669033 original size:40 final size:40
Alignment explanation
Indices: 97668988--97669117 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
97668978 CGGAATATAA
97668988 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
97669028 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
97669068 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
97669108 CCGGATATAA
1 CCGGATATAA
97669118 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:97669132 original size:40 final size:40
Alignment explanation
Indices: 97669004--97669154 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
97668994 ATAAGCATGT
* * *
97669004 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
97669044 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
97669084 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
97669124 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
97669155 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.16
40 76 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:97669138 original size:80 final size:79
Alignment explanation
Indices: 97669004--97669154 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
97668994 ATAAGCATGT
*
97669004 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
97669069 CGGATATAGCCGCTA
65 CGGATATAGCCGCTA
* * ** * *
97669084 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
97669147 CCGGATAT
64 CCGGATAT
97669155 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCGCTA
Found at i:97677146 original size:40 final size:39
Alignment explanation
Indices: 97677035--97677186 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
97677025 TATAACATGT
* ** *
97677035 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
97677075 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
97677115 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
97677155 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
97677187 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:97677169 original size:80 final size:80
Alignment explanation
Indices: 97677035--97677186 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
97677025 TATAACATGT
* *
97677035 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
97677100 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
97677115 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
97677178 CCCGGATAT
64 CCCGGATAT
97677187 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:97678992 original size:26 final size:26
Alignment explanation
Indices: 97678963--97679012 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
97678953 AATAAAAGAA
97678963 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
97678989 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
97679013 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:97680889 original size:23 final size:23
Alignment explanation
Indices: 97680859--97681119 Score: 378
Period size: 23 Copynumber: 11.1 Consensus size: 23
97680849 CCTTGCCTCT
*
97680859 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
97680882 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
97680905 TTTTGATCACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
97680929 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
97680952 TTTTGATAACTGGGGCGTAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
97680976 TTTTAATAACTGGGGCGTAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
* * *
97681000 TTTTGATCACTGGGGCATAAGTCC
1 -TTTAATAACTGGGGCATAAGCCC
97681024 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
97681047 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
97681071 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
97681094 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
97681117 TTT
1 TTT
97681120 TGCACTTCCT
Statistics
Matches: 216, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
23 110 0.51
24 106 0.49
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:97680917 original size:47 final size:47
Alignment explanation
Indices: 97680857--97681119 Score: 429
Period size: 47 Copynumber: 5.6 Consensus size: 47
97680847 GGCCTTGCCT
* * *
97680857 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
97680904 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* *
97680951 CTTTTGATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCC
* *
97680999 CTTTTGATCACTGGGGCATAAGTCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
97681046 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
97681093 C-TTTAATAACTGGGGCATAAGCCCTTT
1 CTTTTGATAACTGGGGCATAAGCCCTTT
97681120 TGCACTTCCT
Statistics
Matches: 201, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
46 25 0.12
47 133 0.66
48 43 0.21
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:97680925 original size:24 final size:24
Alignment explanation
Indices: 97680857--97681120 Score: 394
Period size: 24 Copynumber: 11.2 Consensus size: 24
97680847 GGCCTTGCCT
*
97680857 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
97680881 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
97680904 CTTTTGATCACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
97680928 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
97680951 CTTTTGATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
97680975 CTTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* * *
97680999 CTTTTGATCACTGGGGCATAAGTC
1 CTTTTAATAACTGGGGCATAAGCC
97681023 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
97681046 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
97681070 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
97681093 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
97681116 CTTTT
1 CTTTT
97681121 GCACTTCCTC
Statistics
Matches: 217, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
23 107 0.49
24 110 0.51
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:97681194 original size:20 final size:20
Alignment explanation
Indices: 97681166--97681216 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
97681156 GCATTTATAA
*
97681166 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
97681186 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
97681206 ACATATCATGT
1 ACATATCATGT
97681217 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:97681281 original size:25 final size:25
Alignment explanation
Indices: 97681253--97681300 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
97681243 ATACATAAAC
* *
97681253 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
97681278 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
97681301 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:97682098 original size:39 final size:39
Alignment explanation
Indices: 97682047--97682123 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
97682037 AAAATATTAA
97682047 AAGAAGACCCCATAAAGTCTATGCCCATATTCGGCCATT
1 AAGAAGACCCCATAAAGTCTATGCCCATATTCGGCCATT
97682086 AAGAAGACCCCATAAAGTCTATGCCCATATTCGGCCAT
1 AAGAAGACCCCATAAAGTCTATGCCCATATTCGGCCAT
97682124 CTCCCTAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.22
Consensus pattern (39 bp):
AAGAAGACCCCATAAAGTCTATGCCCATATTCGGCCATT
Found at i:97684015 original size:26 final size:26
Alignment explanation
Indices: 97683985--97684034 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
97683975 AATAAAATAA
97683985 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
97684011 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
97684035 AGCATTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:97690888 original size:26 final size:26
Alignment explanation
Indices: 97690859--97690908 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
97690849 AATAAAAGAA
97690859 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
97690885 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
97690909 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:97693001 original size:26 final size:26
Alignment explanation
Indices: 97692972--97693021 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
97692962 AATAAAAGAA
97692972 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
97692998 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
97693022 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:97695117 original size:26 final size:26
Alignment explanation
Indices: 97695088--97695137 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
97695078 CAATAAAGAA
*
97695088 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTCCAATTTAATTCT
*
97695114 AACATTCAATATTCCAGTTTAATT
1 AACATTCAATATTCCAATTTAATT
97695138 AGCATTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.16, G:0.02, T:0.44
Consensus pattern (26 bp):
AACATTCAATATTCCAATTTAATTCT
Found at i:97702051 original size:26 final size:26
Alignment explanation
Indices: 97702022--97702073 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
97702012 AATAAAAGAA
*
97702022 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTCCAATTTAATTAG
*
97702048 AACATTCAATATTCCAGTTTAATTAG
1 AACATTCAATATTCCAATTTAATTAG
97702074 CATTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40
Consensus pattern (26 bp):
AACATTCAATATTCCAATTTAATTAG
Found at i:97705093 original size:28 final size:28
Alignment explanation
Indices: 97705028--97705128 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
97705018 ATAGTGAATC
*
97705028 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
97705057 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
97705085 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
97705115 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97705129 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:97713020 original size:28 final size:28
Alignment explanation
Indices: 97712955--97713055 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
97712945 ATAGTGAATC
*
97712955 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
97712984 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
97713012 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
97713042 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97713056 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:97723591 original size:71 final size:64
Alignment explanation
Indices: 97723447--97723591 Score: 139
Period size: 71 Copynumber: 2.2 Consensus size: 64
97723437 AACAATTTAT
* ** * *
97723447 GCAAATATAATATAGAAAATAATAAATAACTACATAAATTACATAATATACATTATCATTTCAT
1 GCAAATATAATATAGAAAACAATAAATAAAAACATAAATTACATAATATACATAATCATTTCAA
** *
97723511 GCAGTTATAATCATAGAAAACAATGAATATAAAAATATAAATTACATAATATATATACAATAAT-
1 GCAAATATAAT-ATAGAAAACAAT-AA-ATAAAAACATAAATTAC---ATA-ATATAC-ATAATC
97723575 ATTTCAA
58 ATTTCAA
97723582 GCAAATATAA
1 GCAAATATAA
97723592 CTTAAAATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
64 9 0.14
65 11 0.17
66 2 0.03
67 14 0.22
70 3 0.05
71 20 0.32
72 4 0.06
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (64 bp):
GCAAATATAATATAGAAAACAATAAATAAAAACATAAATTACATAATATACATAATCATTTCAA
Found at i:97723907 original size:20 final size:18
Alignment explanation
Indices: 97723862--97723916 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
97723852 TTAGAAACGA
97723862 TTAATATATATATAAAAC
1 TTAATATATATATAAAAC
* *
97723880 ATACTATATGATATAATAAC
1 TTAATATAT-ATATAA-AAC
*
97723900 TTAATATATTTATAAAA
1 TTAATATATATATAAAA
97723917 ATAATAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 9 0.30
19 11 0.37
20 10 0.33
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (18 bp):
TTAATATATATATAAAAC
Found at i:97724058 original size:7 final size:7
Alignment explanation
Indices: 97724046--97724081 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
97724036 TTATATGTAC
97724046 TAATAAA
1 TAATAAA
97724053 TAATAAA
1 TAATAAA
97724060 TAATAAAA
1 TAAT-AAA
*
97724068 TAATATA
1 TAATAAA
97724075 TAATAAA
1 TAATAAA
97724082 ATGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:97724070 original size:15 final size:15
Alignment explanation
Indices: 97724046--97724083 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
97724036 TTATATGTAC
97724046 TAAT-AAATAATAAA
1 TAATAAAATAATAAA
*
97724060 TAATAAAATAATATA
1 TAATAAAATAATAAA
97724075 TAATAAAAT
1 TAATAAAAT
97724084 GAAGATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAATAAAATAATAAA
Found at i:97724077 original size:19 final size:19
Alignment explanation
Indices: 97724051--97724207 Score: 63
Period size: 21 Copynumber: 7.7 Consensus size: 19
97724041 TGTACTAATA
97724051 AATA-ATAAATAATAAAAT
1 AATATATAAATAATAAAAT
* *
97724069 AATATATAATAAAATGAAGAT
1 AATATATAA-ATAAT-AAAAT
**
97724090 AATATAGGGAATAATATATAAT
1 AATATA-TAAATAATA-A-AAT
* *
97724112 AAAATATATAAT-ATATAAT
1 AATATATA-AATAATAAAAT
97724131 AATAGCTATAAATAA-AATATAT
1 AATA--TATAAATAATAA-A-AT
*
97724153 AAAATATAAATAACATGATAAAT
1 AATATATAAAT-A-AT-A-AAAT
*
97724176 AATACATAAAT-A-AAAAT
1 AATATATAAATAATAAAAT
*
97724193 ATTATATATAATAAT
1 AATATATA-AATAAT
97724208 TTTACATGTA
Statistics
Matches: 102, Mismatches: 17, Indels: 38
0.65 0.11 0.24
Matches are distributed among these distances:
17 10 0.10
18 8 0.08
19 11 0.11
20 17 0.17
21 25 0.25
22 17 0.17
23 11 0.11
24 2 0.02
25 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
AATATATAAATAATAAAAT
Found at i:97724112 original size:7 final size:7
Alignment explanation
Indices: 97724100--97724205 Score: 57
Period size: 7 Copynumber: 15.9 Consensus size: 7
97724090 AATATAGGGA
97724100 ATAATAT
1 ATAATAT
97724107 ATAATA-
1 ATAATAT
97724113 A-AATAT
1 ATAATAT
97724119 ATAATAT
1 ATAATAT
97724126 ATAATA-
1 ATAATAT
*
97724132 ATAGCTAT
1 ATA-ATAT
97724140 A-AATA-
1 ATAATAT
97724145 A-AATAT
1 ATAATAT
*
97724151 ATAAAAT
1 ATAATAT
*
97724158 ATAAATAAC
1 AT-AAT-AT
* *
97724167 ATGATAA
1 ATAATAT
*
97724174 ATAATAC
1 ATAATAT
97724181 ATAA-AT
1 ATAATAT
*
97724187 A-AAAAT
1 ATAATAT
*
97724193 ATTATAT
1 ATAATAT
97724200 ATAATA
1 ATAATA
97724206 ATTTTACATG
Statistics
Matches: 76, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
5 11 0.14
6 13 0.17
7 44 0.58
8 5 0.07
9 3 0.04
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (7 bp):
ATAATAT
Found at i:97724150 original size:23 final size:22
Alignment explanation
Indices: 97724099--97724190 Score: 70
Period size: 23 Copynumber: 4.3 Consensus size: 22
97724089 TAATATAGGG
*
97724099 AATAATATATAATAA-A--ATA
1 AATAAAATATAATAATACTATA
* *
97724118 TATAATATATAATAATAGCTATA
1 AATAAAATATAATAATA-CTATA
*
97724141 AATAAAATAT-ATAA-AATATA
1 AATAAAATATAATAATACTATA
*
97724161 AATAACATGATAAATAATAC-ATA
1 AATAAAAT-AT-AATAATACTATA
97724184 AATAAAA
1 AATAAAA
97724191 ATATTATATA
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
19 14 0.24
20 12 0.21
21 3 0.05
22 4 0.07
23 24 0.41
24 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.30
Consensus pattern (22 bp):
AATAAAATATAATAATACTATA
Found at i:97724174 original size:32 final size:31
Alignment explanation
Indices: 97724109--97724177 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 31
97724099 AATAATATAT
* *
97724109 AATAAAATATATAATATATAATAATAGCTATA
1 AATAAAATATATAAAATATAATAACAGC-ATA
97724141 AATAAAATATATAAAATATAAATAACATG-ATA
1 AATAAAATATATAAAATAT-AATAACA-GCATA
97724173 AATAA
1 AATAA
97724178 TACATAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 26 0.79
33 6 0.18
34 1 0.03
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (31 bp):
AATAAAATATATAAAATATAATAACAGCATA
Found at i:97724199 original size:47 final size:51
Alignment explanation
Indices: 97724138--97724257 Score: 128
Period size: 49 Copynumber: 2.4 Consensus size: 51
97724128 AATAATAGCT
*
97724138 ATAAATAAAATATATAAAATATAAATAACATG-ATAAATAATA-CATAAATA
1 ATAAATAATATATATAAAATATAAATAACATGTATAAATAATATCATAAA-A
* * *
97724188 A-AAATATTATATATAATAAT-T---TTACATGTATAAATAATATTTATAAAA
1 ATAAATAATATATATAA-AATATAAATAACATGTATAAATAATA-TCATAAAA
97724236 ATAAATAATATATATAAAATAT
1 ATAAATAATATATATAAAATAT
97724258 TTAAAATAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
46 6 0.10
47 10 0.17
48 5 0.08
49 34 0.58
50 4 0.07
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (51 bp):
ATAAATAATATATATAAAATATAAATAACATGTATAAATAATATCATAAAA
Found at i:97724203 original size:15 final size:15
Alignment explanation
Indices: 97724185--97724300 Score: 65
Period size: 15 Copynumber: 7.4 Consensus size: 15
97724175 TAATACATAA
97724185 ATAAAAATATTATAT
1 ATAAAAATATTATAT
* * *
97724200 ATAATAATTTTACAT
1 ATAAAAATATTATAT
* * * *
97724215 GTATAAATAATATTT
1 ATAAAAATATTATAT
*
97724230 ATAAAAATAAATAATAT
1 ATAAAAAT--ATTATAT
*
97724247 ATATAAAATATT-TAAA
1 ATA-AAAATATTAT-AT
97724263 ATAAATAA-ATTATAT
1 ATAAA-AATATTATAT
*
97724278 ATAAAATGTATATATAT
1 ATAAAA-ATAT-TATAT
97724295 ATAAAA
1 ATAAAA
97724301 GATTAAAATT
Statistics
Matches: 73, Mismatches: 19, Indels: 16
0.68 0.18 0.15
Matches are distributed among these distances:
14 1 0.01
15 38 0.52
16 11 0.15
17 18 0.25
18 5 0.07
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.39
Consensus pattern (15 bp):
ATAAAAATATTATAT
Found at i:97724239 original size:19 final size:19
Alignment explanation
Indices: 97724217--97724254 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
97724207 TTTTACATGT
*
97724217 ATAAATAATATTTATAAAA
1 ATAAATAATATATATAAAA
97724236 ATAAATAATATATATAAAA
1 ATAAATAATATATATAAAA
97724255 TATTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATAAATAATATATATAAAA
Found at i:97724272 original size:31 final size:28
Alignment explanation
Indices: 97724223--97724284 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
97724213 ATGTATAAAT
*
97724223 AATATTTATAAAAATAAATAATATATATAA
1 AATATTTAAAAAAATAAAT--TATATATAA
97724253 AATATTTAAAATAAATAAATTATATATAA
1 AATATTTAAAA-AAATAAATTATATATAA
97724282 AAT
1 AAT
97724285 GTATATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.40
30 10 0.33
31 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (28 bp):
AATATTTAAAAAAATAAATTATATATAA
Found at i:97724293 original size:46 final size:45
Alignment explanation
Indices: 97724217--97724309 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 45
97724207 TTTTACATGT
*
97724217 ATAAATAATATTTATAAAAATAAATAATATATATAAAATATTTAAA
1 ATAAATAATATTTATAAAAATAAATAATATATATAAAAGA-TTAAA
**
97724263 ATAAATAA-ATTATATATAAAATGTAT-ATATATATAAAAGATTAAA
1 ATAAATAATATT-TATA-AAAATAAATAATATATATAAAAGATTAAA
97724308 AT
1 AT
97724310 TGAATTTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
45 10 0.24
46 25 0.60
47 7 0.17
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (45 bp):
ATAAATAATATTTATAAAAATAAATAATATATATAAAAGATTAAA
Found at i:97724298 original size:78 final size:79
Alignment explanation
Indices: 97724115--97724299 Score: 184
Period size: 78 Copynumber: 2.3 Consensus size: 79
97724105 ATATAATAAA
*
97724115 ATATATAATATATAATA-ATAGCTATAAATAAAATATATAAAATATAAATAACATGATAAATAAT
1 ATATATAATA-ATTATACATA--TATAAATAAAATATATAAAATATAAATAACATGATAAATAAT
97724179 ACATAAATAAAAATATT
63 ACATAAATAAAAATATT
* * * * * *
97724196 ATATATAATAATTTTACATGTATAAATAATATTTATAAAA-ATAAATAATAT-ATATAA-AATAT
1 ATATATAATAATTATACATATATAAATAAAATATATAAAATATAAATAACATGATA-AATAATAC
*
97724258 TTAAAATAAATAA-ATT
65 AT-AAATAAA-AATATT
*
97724274 ATATATAA-AATGTATATATATATAAA
1 ATATATAATAAT-TATACATATATAAA
97724300 AGATTAAAAT
Statistics
Matches: 88, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
77 11 0.12
78 41 0.47
79 20 0.23
80 4 0.05
81 12 0.14
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (79 bp):
ATATATAATAATTATACATATATAAATAAAATATATAAAATATAAATAACATGATAAATAATACA
TAAATAAAAATATT
Found at i:97725851 original size:90 final size:90
Alignment explanation
Indices: 97725731--97726227 Score: 780
Period size: 90 Copynumber: 5.5 Consensus size: 90
97725721 AATATTCTTA
** * *
97725731 ATCTGCTCCTTGTCAAATACAGAGACGCCAAATCTGTCATCTTCGATCTACTTCGATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACAC
* * *
97725796 TCGAATGTCAGAT-TCGTTATCTTTG
66 ACGAATGTCAGATCT-GCTATCTTCG
* * * * *
97725821 ATCTGCTCCCTGTCTAATACAGAGATGCCAAACCTGTCATTTTCGATCTGCTTTGATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACAC
*
97725886 ACGAATGTCAGATCTGCTATCTTTG
66 ACGAATGTCAGATCTGCTATCTTCG
97725911 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACAC
97725976 ACGAATGTCAGATCTGCTATCTTCG
66 ACGAATGTCAGATCTGCTATCTTCG
* * * *
97726001 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTCAATTTGCTTCGATGTAAACAT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACAC
97726066 ACGAATGTCAGATCTGCTATCTTCG
66 ACGAATGTCAGATCTGCTATCTTCG
* * *
97726091 ATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGTTTCAATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACAC
97726156 ACGAATGTCAGATCTGCTATCTTCG
66 ACGAATGTCAGATCTGCTATCTTCG
* *
97726181 CTCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCTTCGAT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGAT
97726228 TTATTCCCTG
Statistics
Matches: 377, Mismatches: 29, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
90 376 1.00
91 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (90 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACAC
ACGAATGTCAGATCTGCTATCTTCG
Found at i:97725914 original size:45 final size:45
Alignment explanation
Indices: 97725769--97726187 Score: 240
Period size: 45 Copynumber: 9.3 Consensus size: 45
97725759 CAAATCTGTC
* * *
97725769 ATCTTCGATCTACTTCGATGTAAACACTCGAATGTCAGAT-TCGTT
1 ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT-GCT
* ** * * * * *
97725814 ATCTTTGATCTGC-TCCCTGTCTAATACA-GAGATGCCAAACCTG-T
1 ATCTTCGATCTGCTTCGATGT-AAACACACGA-ATGTCAGATCTGCT
* *
97725858 CATTTTCGATCTGCTTTGATGTAAACACACGAATGTCAGATCTGCT
1 -ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCT
* * * * * * *
97725904 ATCTTTGATCTGCTCCCCG-TCT-AATACA-GAGACGCCAAATCTG-T
1 ATCTTCGATCTGCT--TCGATGTAAACACACGA-ATGTCAGATCTGCT
97725948 CATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCT
1 -ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCT
* * * * *
97725994 ATCTTCGATCTGCTCCCCG-TCT-AATACA-GAGATGCCAAATCTG-T
1 ATCTTCGATCTGCT--TCGATGTAAACACACGA-ATGTCAGATCTGCT
* * *
97726038 CATCTTCAATTTGCTTCGATGTAAACATACGAATGTCAGATCTGCT
1 -ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCT
* * * * * * *
97726084 ATCTTCGATCTGCTCCCCG-TCT-AATATA-GAGACGCCAAATCTG-T
1 ATCTTCGATCTGCT--TCGATGTAAACACACGA-ATGTCAGATCTGCT
* *
97726128 CATCTTCGATCTGTTTCAATGTAAACACACGAATGTCAGATCTGCT
1 -ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCT
*
97726174 ATCTTCGCTCTGCT
1 ATCTTCGATCTGCT
97726188 CCCCATCTAA
Statistics
Matches: 275, Mismatches: 68, Indels: 62
0.68 0.17 0.15
Matches are distributed among these distances:
43 5 0.02
44 23 0.08
45 219 0.80
46 23 0.08
47 5 0.02
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCT
Found at i:97726216 original size:45 final size:45
Alignment explanation
Indices: 97725813--97726266 Score: 261
Period size: 45 Copynumber: 10.1 Consensus size: 45
97725803 TCAGATTCGT
* ** *
97725813 TATCTTTGATCTGCTCCCTGTCTAATACAGAGATGCCAAACCTG-
1 TATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGC
* *** * * * *
97725857 TCATTTTCGATCTGCT-TTGATGTAA-ACACACGAATGTCAGATCTGC
1 T-ATCTTCGATCTGCTCCCCATCTAATACAGA-G-ATGCCAAATCTGC
* * *
97725903 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG-
1 TATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGC
* * * * * *
97725947 TCATCTTCGATCTGCT-TCGATGTAA-ACACACGAATGTCAGATCTGC
1 T-ATCTTCGATCTGCTCCCCATCTAATACAGA-G-ATGCCAAATCTGC
*
97725993 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTG-
1 TATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGC
* * * * * * * *
97726037 TCATCTTCAATTTGCT-TCGATGTAA-ACATACGAATGTCAGATCTGC
1 T-ATCTTCGATCTGCTCCCCATCTAATACAGA-G-ATGCCAAATCTGC
* * *
97726083 TATCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTG-
1 TATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGC
** * * * * *
97726127 TCATCTTCGATCTG-TTTCAATGTAA-ACACACGAATGTCAGATCTGC
1 T-ATCTTCGATCTGCTCCCCATCTAATACAGA-G-ATGCCAAATCTGC
* *
97726173 TATCTTCGCTCTGCTCCCCATCTAATACAGAGACGCCAAATCTG-
1 TATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGC
* ** ** *
97726217 TCATCTTCGATTTATTCCCTGTC-AAGACAGAGATGCCAAATCTGC
1 T-ATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGC
97726262 TATCT
1 TATCT
97726267 ACATTGTCCC
Statistics
Matches: 299, Mismatches: 85, Indels: 52
0.69 0.19 0.12
Matches are distributed among these distances:
43 15 0.05
44 52 0.17
45 188 0.63
46 29 0.10
47 15 0.05
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGC
Found at i:97727153 original size:13 final size:13
Alignment explanation
Indices: 97727137--97727161 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97727127 CCATTTTTAT
97727137 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
97727150 TTTTTTCTTTTT
1 TTTTTTCTTTTT
97727162 TAGAAGTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:97737820 original size:67 final size:63
Alignment explanation
Indices: 97737708--97737830 Score: 165
Period size: 67 Copynumber: 1.9 Consensus size: 63
97737698 TACTTTAACA
** *
97737708 ATTTATGCAAATATAATATAGAAAATGATAAATAACGACATAAATTACATAATATACATTATC
1 ATTTATGCAAATATAATATAGAAAACAATAAATAACAACATAAATTACATAATATACATTATC
* *
97737771 ATTTCATGCAGATATAATCATAGAAAACAATGAATATAACAATATAAATTACATAATATA
1 ATTT-ATGCAAATATAAT-ATAGAAAACAAT-AA-ATAACAACATAAATTACATAATATA
97737831 TATACAATAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
63 4 0.08
64 12 0.24
65 10 0.20
66 2 0.04
67 23 0.45
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.31
Consensus pattern (63 bp):
ATTTATGCAAATATAATATAGAAAACAATAAATAACAACATAAATTACATAATATACATTATC
Found at i:97737857 original size:71 final size:64
Alignment explanation
Indices: 97737708--97737858 Score: 162
Period size: 71 Copynumber: 2.3 Consensus size: 64
97737698 TACTTTAACA
** * *
97737708 ATTT-ATGCAAATATAATATAGAAAATGATAAATAACGACATAAATTACATAATATACATTATC
1 ATTTCATGCAAATATAATATAGAAAACAATAAATAACAACATAAATTACATAATATACATAATC
* *
97737771 ATTTCATGCAGATATAATCATAGAAAACAATGAATATAACAATATAAATTACATAATATATATAC
1 ATTTCATGCAAATATAAT-ATAGAAAACAAT-AA-ATAACAACATAAATTAC---ATA-ATATAC
97737836 AATAAT-
59 -ATAATC
97737842 ATTTCATGCAAATATAA
1 ATTTCATGCAAATATAA
97737859 CTTAAAATAA
Statistics
Matches: 72, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
63 4 0.06
64 12 0.17
65 10 0.14
66 2 0.03
67 15 0.21
70 3 0.04
71 22 0.31
72 4 0.06
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (64 bp):
ATTTCATGCAAATATAATATAGAAAACAATAAATAACAACATAAATTACATAATATACATAATC
Found at i:97738291 original size:7 final size:7
Alignment explanation
Indices: 97738279--97738340 Score: 53
Period size: 7 Copynumber: 9.6 Consensus size: 7
97738269 TACTAATAAA
97738279 ATAATAT
1 ATAATAT
97738286 ATAATA-
1 ATAATAT
97738292 A-AATAT
1 ATAATAT
97738298 ATAATAT
1 ATAATAT
97738305 ATAATA-
1 ATAATAT
**
97738311 A-AAGCT
1 ATAATAT
97738317 ATAA-AT
1 ATAATAT
*
97738323 AAAATAT
1 ATAATAT
*
97738330 ATAAAAT
1 ATAATAT
97738337 ATAA
1 ATAA
97738341 ATAACATGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
5 6 0.14
6 8 0.18
7 30 0.68
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (7 bp):
ATAATAT
Found at i:97738296 original size:12 final size:12
Alignment explanation
Indices: 97738281--97738333 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 12
97738271 CTAATAAAAT
97738281 AATATATAATAA
1 AATATATAATAA
97738293 AATATATAAT-A
1 AATATATAATAA
*
97738304 TATA-ATAA-AA
1 AATATATAATAA
**
97738314 GCTATA-AATAA
1 AATATATAATAA
97738325 AATATATAA
1 AATATATAA
97738334 AATATAAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
10 9 0.28
11 11 0.34
12 12 0.38
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (12 bp):
AATATATAATAA
Found at i:97738303 original size:19 final size:19
Alignment explanation
Indices: 97738279--97738385 Score: 75
Period size: 19 Copynumber: 5.7 Consensus size: 19
97738269 TACTAATAAA
97738279 ATAATATATAATAAAATAT
1 ATAATATATAATAAAATAT
97738298 ATAATATATAATAAAAGCTAT
1 ATAATATATAATAAAA--TAT
*
97738319 A-AATAAAATATATAAAATAT
1 ATAAT-ATATA-ATAAAATAT
* *
97738339 A-AATAACATGAT-AAATAT
1 ATAAT-ATATAATAAAATAT
*
97738357 -T-ACATA-AATAAAA-AT
1 ATAATATATAATAAAATAT
*
97738372 ATTATATATAATAA
1 ATAATATATAATAA
97738386 TTTTACATGT
Statistics
Matches: 72, Mismatches: 7, Indels: 19
0.73 0.07 0.19
Matches are distributed among these distances:
15 4 0.06
16 6 0.08
17 5 0.07
18 11 0.15
19 18 0.25
20 14 0.19
21 8 0.11
22 6 0.08
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.33
Consensus pattern (19 bp):
ATAATATATAATAAAATAT
Found at i:97738373 original size:17 final size:18
Alignment explanation
Indices: 97738351--97738385 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
97738341 ATAACATGAT
97738351 AAATATTACATA-AATAA
1 AAATATTACATATAATAA
*
97738368 AAATATTATATATAATAA
1 AAATATTACATATAATAA
97738386 TTTTACATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
AAATATTACATATAATAA
Found at i:97738418 original size:19 final size:18
Alignment explanation
Indices: 97738396--97738435 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
97738386 TTTTACATGT
*
97738396 ATAAATAATATTTATTAAA
1 ATAAATAATATATA-TAAA
97738415 ATAAATAATATATATAAA
1 ATAAATAATATATATAAA
97738433 ATA
1 ATA
97738436 TTTAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAAATAATATATATAAA
Found at i:97738469 original size:29 final size:26
Alignment explanation
Indices: 97738409--97738472 Score: 83
Period size: 29 Copynumber: 2.3 Consensus size: 26
97738399 AATAATATTT
*
97738409 ATTAAAATAAATAATATATATAAAAT
1 ATTAAAATAAATAATATATATAAAAG
97738435 ATTTAAAATAAATAAATTATATATAAAAGG
1 A-TTAAAATAAAT-AA-TATATATAAAA-G
97738465 ATTAAAAT
1 ATTAAAAT
97738473 TGAATTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
26 1 0.03
27 11 0.33
28 2 0.06
29 18 0.55
30 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (26 bp):
ATTAAAATAAATAATATATATAAAAG
Found at i:97748088 original size:40 final size:40
Alignment explanation
Indices: 97748033--97748282 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
97748023 AACATTGGAA
97748033 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97748073 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97748113 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97748153 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
97748193 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
97748232 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
97748273 CTATATCCGG
1 ATATATCCGG
97748283 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:97756262 original size:40 final size:40
Alignment explanation
Indices: 97756207--97756416 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
97756197 AACATTGGAA
97756207 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97756247 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97756287 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
97756327 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
97756366 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
97756407 CTATATCCGG
1 ATATATCCGG
97756417 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:97761609 original size:26 final size:26
Alignment explanation
Indices: 97761580--97761630 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
97761570 AATAAAAGAA
97761580 AACATTCAATATTTCTA-TTTAATTAT
1 AACATTCAATATTTC-AGTTTAATTAT
97761606 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
97761631 GCATTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAT
Found at i:97763728 original size:26 final size:26
Alignment explanation
Indices: 97763699--97763749 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
97763689 AATAAAAGAA
97763699 AACATTCAATATTTCTA-TTTAATTAT
1 AACATTCAATATTTC-AGTTTAATTAT
97763725 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
97763750 GCATTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAT
Found at i:97764928 original size:40 final size:40
Alignment explanation
Indices: 97764819--97764929 Score: 127
Period size: 41 Copynumber: 2.8 Consensus size: 40
97764809 TAGATAGAGT
* * * *
97764819 TTTAGCGGCGTTTGTAAAAAAACGCCGCAATAGGTCGACC
1 TTTAGCGGCGTTTTTATAAAAACGCCGCTACAGGTCGACC
**
97764859 TTTAGCGATGTTTTT-TGAAAAAGCGCCGCTACAGGTC-AGCC
1 TTTAGCGGCGTTTTTAT-AAAAA-CGCCGCTACAGGTCGA-CC
97764900 TTTAGCGGCGTTTTTATAAAAACGCCGCTA
1 TTTAGCGGCGTTTTTATAAAAACGCCGCTA
97764930 AGAGGTTAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
40 26 0.44
41 32 0.54
42 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTATAAAAACGCCGCTACAGGTCGACC
Found at i:97765037 original size:41 final size:41
Alignment explanation
Indices: 97764972--97765079 Score: 146
Period size: 41 Copynumber: 2.7 Consensus size: 41
97764962 AGCTTAACAT
97764972 TTTAGTGGCG-TTTTTCTAAAAACGCCGCTATAGATCAAAC
1 TTTAGTGGCGTTTTTTCTAAAAACGCCGCTATAGATCAAAC
* * *
97765012 TTTAGTGGCGTTTTTTCTAAAAACGCCGCTATAGGTCCACC
1 TTTAGTGGCGTTTTTTCTAAAAACGCCGCTATAGATCAAAC
* * **
97765053 TTTAGCGGCATTTTTTAGAAAAACGCC
1 TTTAGTGGCGTTTTTTCTAAAAACGCC
97765080 ACTAAAATGT
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
40 10 0.17
41 50 0.83
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (41 bp):
TTTAGTGGCGTTTTTTCTAAAAACGCCGCTATAGATCAAAC
Found at i:97765253 original size:151 final size:153
Alignment explanation
Indices: 97764836--97765345 Score: 552
Period size: 153 Copynumber: 3.3 Consensus size: 153
97764826 GCGTTTGTAA
* * * * * * *
97764836 AAAAACGCCGCAATAGGTCGACCTTTAGCGATGTTTTTTGAAAAAGCGCCGCTACAGGTCAGCCT
1 AAAAACGCCGCAATAGATCAAACTTTAGCGGTGTTTTTTTAAAAA-CGCCGCTAAAGGTCAACCT
* * * * **
97764901 TTAGCGGCGTTTTTATAAAAACGCCGCTAAGAGGTTAACCAAAACGACGTCGTTTTAC-ATGAGC
65 TTAGCGGCGTTTTTAGAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCGTTTT-CTATGAGC
* *
97764965 TTAACATT----TTAGTGGCGTTTTTCT
129 TT--CATTGGCAGTAGTGGCG-TTTTCC
* * * * *
97764989 AAAAACGCCGCTATAGATCAAACTTTAGTGGCGTTTTTTCTAAAAACGCCGCTATAGGTCCACCT
1 AAAAACGCCGCAATAGATCAAACTTTAGCGGTGTTTTTT-TAAAAACGCCGCTAAAGGTCAACCT
* *
97765054 TTAGCGGCATTTTTTAGAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCATTTTCTATGAGC
65 TTAGCGGC-GTTTTTAGAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCGTTTTCTATGAGC
*
97765119 TTCATTGGCAGTAGTGGCGTTTTCG
129 TTCATTGGCAGTAGTGGCGTTTTCC
* *
97765144 ATAAAACGCCGCAATAGATC-AACTTTAGCGGT-TTTTTTTAAAAATGCCGCTAAAGG-AAACCT
1 A-AAAACGCCGCAATAGATCAAACTTTAGCGGTGTTTTTTTAAAAACGCCGCTAAAGGTCAACCT
* * * *
97765206 ATAGCGGCGTTTTT-GAAAAAACGCCACTAAAATGTTAAGTAAAACGACGTCGTTTTATATGTGC
65 TTAGCGGCGTTTTTAG-AAAAACGCCACTAAAATGTTAAGAAAAACGACGTCGTTTTCTATGAGC
* * *
97765270 TCCTTTGGCAGTAGCGGCGTTTTCCC
129 TTCATTGGCAGTAGTGGCGTTTT-CC
* * *
97765296 AAAAACGCCACAAAAGATCAAACTTTAGCGGTGTTTTTTCAAAAACGCCG
1 AAAAACGCCGCAATAGATCAAACTTTAGCGGTGTTTTTTTAAAAACGCCG
97765346 TAATTGCTAA
Statistics
Matches: 303, Mismatches: 42, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
150 1 0.00
151 85 0.28
152 29 0.10
153 88 0.29
154 59 0.19
155 16 0.05
156 25 0.08
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (153 bp):
AAAAACGCCGCAATAGATCAAACTTTAGCGGTGTTTTTTTAAAAACGCCGCTAAAGGTCAACCTT
TAGCGGCGTTTTTAGAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCGTTTTCTATGAGCTT
CATTGGCAGTAGTGGCGTTTTCC
Found at i:97765797 original size:15 final size:14
Alignment explanation
Indices: 97765779--97765821 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
97765769 CTTAATATTT
97765779 TTATAGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
97765794 TTATGGGTTTAAGGG
1 TTAT-GGTTTAGGGG
*
97765809 TTATGATTTAGGG
1 TTATGGTTTAGGG
97765822 TTGATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:97765828 original size:14 final size:13
Alignment explanation
Indices: 97765786--97765847 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 13
97765776 TTTTTATAGG
*
97765786 TTTAGGGGTTATGGG
1 TTTA-GGGTTAT-GA
97765801 TTTAAGGGTTATGA
1 TTT-AGGGTTATGA
97765815 TTTAGGGTTGATGA
1 TTTAGGGTT-ATGA
**
97765829 TTTATGTTTTATGA
1 TTTA-GGGTTATGA
97765843 TTTAG
1 TTTAG
97765848 AGTTTGAGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
13 7 0.17
14 20 0.49
15 13 0.32
16 1 0.02
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (13 bp):
TTTAGGGTTATGA
Found at i:97765867 original size:28 final size:28
Alignment explanation
Indices: 97765809--97765867 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
97765799 GGTTTAAGGG
**
97765809 TTATGATTTAGGGTTGATGATTTATGTT
1 TTATGATTTAGGGTTGATGATTTATAAT
* *
97765837 TTATGATTTAGAGTTTGA-GGTTTATAAT
1 TTATGATTTAG-GGTTGATGATTTATAAT
97765865 TTA
1 TTA
97765868 GAAGGTTAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (28 bp):
TTATGATTTAGGGTTGATGATTTATAAT
Found at i:97766413 original size:7 final size:7
Alignment explanation
Indices: 97766393--97766467 Score: 78
Period size: 7 Copynumber: 10.6 Consensus size: 7
97766383 TTTTTAGTGT
97766393 TTTAGGG
1 TTTAGGG
**
97766400 TCCAGGG
1 TTTAGGG
97766407 TTTAGGG
1 TTTAGGG
97766414 TTTAGGG
1 TTTAGGG
* **
97766421 TCTAATG
1 TTTAGGG
*
97766428 CTTAGGG
1 TTTAGGG
97766435 TTTAGGG
1 TTTAGGG
*
97766442 TTTAGGA
1 TTTAGGG
97766449 TTTAAGGG
1 TTT-AGGG
97766457 TTTAGGG
1 TTTAGGG
97766464 TTTA
1 TTTA
97766468 ATTTTGGAAT
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 47 0.89
8 6 0.11
ACGTcount: A:0.19, C:0.05, G:0.36, T:0.40
Consensus pattern (7 bp):
TTTAGGG
Found at i:97770241 original size:363 final size:363
Alignment explanation
Indices: 97769532--97774805 Score: 10270
Period size: 363 Copynumber: 14.5 Consensus size: 363
97769522 TGCCCATTAT
97769532 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
97769597 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
*
97769662 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATTGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97769727 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97769792 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
*
97769857 TTTAAATTTCTTTAAAAGTTATAACTACATTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97769895 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTC-AAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
97769959 AGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97770024 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97770089 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97770154 GATATTATTATATTCAAATTACTATTTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAT
261 GATATTATTATATTCAAATTACTA-TTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAT
97770219 TTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
325 TTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97770258 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
97770323 AGGCTGGAAACCTGACGGGATGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97770388 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97770453 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97770518 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97770583 TTTAAATTTCTTTAAAAGTTATAACTAC-TTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97770620 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
* *
97770685 AGGCTGGAAACCTAACGGGTTACCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97770750 AACAACGCCACGTATGATGAAT-TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97770814 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97770879 GATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97770943 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97770981 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
97771046 AGGCTGGAAACCTGACGGGTTGCCTTATATCAAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
*
97771111 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATTGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97771176 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97771241 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97771306 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
*
97771344 AATTACAACAATAGCTGACCTTCTCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
97771409 AGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97771474 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97771539 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97771604 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
*
97771669 TTTAAATTTCTTTAAAAGTTATAACTATTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97771707 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
97771772 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97771837 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
* *
97771902 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATGAAAATTAAACTACGATTCTTTTCT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97771967 GATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97772031 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97772069 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
97772134 AGGCTGGAAACCTGACGGGTTGCCTTATATCAAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97772199 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97772264 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97772329 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97772394 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
*
97772432 AATTACAACAATAGCTGACCTTCTCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
97772497 AGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97772562 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97772627 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97772692 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97772757 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97772795 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
97772860 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97772925 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97772990 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97773055 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97773120 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97773158 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
* *
97773223 AGGCTGGAAACCTAACGGGTTACCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97773288 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97773353 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97773418 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97773483 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97773521 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
97773586 AGGCTGGAAACCTGACGGGTTGCCTTATATCAAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97773651 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97773716 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97773781 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97773846 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
*
97773884 AATTACAACAATAGCTGACCTTCTCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
97773949 AGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
*
97774014 AACAACGCCACGTATGATGAATCTTAAACAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97774079 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
*
97774144 GATATTATTATATTTAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97774209 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
*
97774247 AATTACAACAATAGCTGACCTTCTCTCCAACTTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
97774312 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
*
97774377 AACAACGCTACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97774442 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
97774507 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
97774572 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
97774610 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
97774675 AGGCTGGAAACCTGACGGGTTGCCTTATATCAAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
97774740 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
97774805 G
196 G
97774806 TGTAGCACCC
Statistics
Matches: 4856, Mismatches: 49, Indels: 12
0.99 0.01 0.00
Matches are distributed among these distances:
360 68 0.01
361 289 0.06
362 871 0.18
363 3403 0.70
364 225 0.05
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.40
Consensus pattern (363 bp):
AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATT
GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
TTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
Found at i:97777488 original size:26 final size:26
Alignment explanation
Indices: 97777452--97777585 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
97777442 CATGAAATTC
97777452 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
97777478 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
97777504 TTATCATGGAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
*
97777529 TTATCATGGAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
*
97777554 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
97777580 TTATCA
1 TTATCA
97777586 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
25 49 0.47
26 55 0.53
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:97782413 original size:12 final size:12
Alignment explanation
Indices: 97782396--97782426 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
97782386 AGTACTACCT
97782396 CGGCCTCGACCA
1 CGGCCTCGACCA
97782408 CGGCCTCGACCA
1 CGGCCTCGACCA
97782420 CGGCCTC
1 CGGCCTC
97782427 TTCCCCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:97785667 original size:26 final size:26
Alignment explanation
Indices: 97785631--97785766 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
97785621 CATGAAATTC
*
97785631 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
97785657 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
97785683 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
97785709 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
97785735 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
97785761 TTATCA
1 TTATCA
97785767 ATTTGTATCA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:97787775 original size:362 final size:363
Alignment explanation
Indices: 97786039--97788983 Score: 5720
Period size: 363 Copynumber: 8.1 Consensus size: 363
97786029 AGGCGTTACA
97786039 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97786104 TTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97786168 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
*
97786233 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
196 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97786298 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97786363 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
*
97786401 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTAATTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97786466 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97786531 TATTTTTAAATTTCTTTAAAAGTTATAACTAC-TTTT-TCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
*
97786594 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGC
196 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
*
97786659 CTTATATTGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97786724 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
97786762 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
*
97786827 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTTA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97786892 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
*
97786957 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
196 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97787022 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97787087 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
* *
97787125 TATTGAATATTTATATAACCTTAACTTATTTCCAATTTACTTATAAAAATTAAATTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97787190 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97787255 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
*
97787320 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGC
196 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
**
97787385 CTTATATTAAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97787450 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
97787488 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97787553 TTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97787617 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
*
97787682 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
196 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97787747 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97787812 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
97787850 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97787915 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97787980 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
97788045 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
196 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97788110 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97788175 TTAAAAAATTCAAAAAGAATTG-AAAAAGTTCTATCGC
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
97788212 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97788277 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97788342 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
* *
97788407 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTCTATAGGCTGGAAACCTAACGGGTTAC
196 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97788472 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97788537 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
97788575 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97788640 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97788705 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
*
97788770 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGC
196 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97788835 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97788900 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
97788938 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAA
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAA
97788984 CGATTGCTCA
Statistics
Matches: 2550, Mismatches: 28, Indels: 9
0.99 0.01 0.00
Matches are distributed among these distances:
361 352 0.14
362 818 0.32
363 1380 0.54
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.40
Consensus pattern (363 bp):
TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGC
Found at i:97787881 original size:725 final size:726
Alignment explanation
Indices: 97786039--97788983 Score: 5756
Period size: 725 Copynumber: 4.1 Consensus size: 726
97786029 AGGCGTTACA
97786039 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97786104 TTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97786168 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
97786233 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
196 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97786298 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97786363 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTT
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTT
*
97786428 ATTTCCAATTTAATTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACT
391 ATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACT
97786493 ATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATA
456 ATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATA
97786558 ACTAC-TTTT-TCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAA
521 ACTACTTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAA
*
97786621 AGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATTGAGCTGCAAGATATAATGG
586 AGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGG
97786686 ATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAA
651 ATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAA
97786751 AGTTCTATCGC
716 AGTTCTATCGC
97786762 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
*
97786827 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTTA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97786892 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
97786957 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
196 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97787022 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
*
97787087 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAACTT
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTT
*
97787152 ATTTCCAATTTACTTATAAAAATTAAATTACGATTCTTTTTTGATATTATTATATTCAAATTACT
391 ATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACT
97787217 ATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATA
456 ATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATA
97787282 ACTACTTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAA
521 ACTACTTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAA
**
97787347 AGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATTAAGCTGCAAGATATAATGG
586 AGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGG
97787412 ATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAA
651 ATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAA
97787477 AGTTCTATCGC
716 AGTTCTATCGC
97787488 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97787553 TTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97787617 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
97787682 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
196 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97787747 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97787812 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTT
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTT
97787877 ATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACT
391 ATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACT
97787942 ATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATA
456 ATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATA
97788007 ACTACTTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAA
521 ACTACTTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAA
*
97788072 AGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCTGCAAGATATAATGG
586 AGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGG
97788137 ATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTG-AAAA
651 ATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAA
97788201 AGTTCTATCGC
716 AGTTCTATCGC
97788212 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
97788277 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
66 TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
97788342 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
131 TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
* * *
97788407 TCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTCTATAGGCTGGAAACCTAACGGGTTAC
196 TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
97788472 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
261 CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
97788537 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTT
326 TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTT
97788602 ATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACT
391 ATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACT
97788667 ATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATA
456 ATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATA
97788732 ACTACTTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAA
521 ACTACTTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAA
97788797 AGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGG
586 AGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGG
97788862 ATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAA
651 ATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAA
97788927 AGTTCTATCGC
716 AGTTCTATCGC
97788938 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAA
1 TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAA
97788984 CGATTGCTCA
Statistics
Matches: 2202, Mismatches: 15, Indels: 7
0.99 0.01 0.00
Matches are distributed among these distances:
723 93 0.04
724 535 0.24
725 1226 0.56
726 348 0.16
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.40
Consensus pattern (726 bp):
TATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTT
TTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAA
TATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAAAATTACAACAATAGCTGACCTTC
TCTCCGACCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGC
CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
TTAAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTT
ATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACT
ATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATA
ACTACTTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAA
AGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGG
ATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGAATTGAAAAA
AGTTCTATCGC
Found at i:97789032 original size:9 final size:9
Alignment explanation
Indices: 97789020--97789253 Score: 150
Period size: 9 Copynumber: 25.4 Consensus size: 9
97789010 CATAATTTAC
97789020 ATAACTTAT
1 ATAACTTAT
*
97789029 ATAACATAT
1 ATAACTTAT
*
97789038 ATAACTTAC
1 ATAACTTAT
97789047 ATAACTTAT
1 ATAACTTAT
* * *
97789056 ACAACATAC
1 ATAACTTAT
97789065 ATAACTTAT
1 ATAACTTAT
* *
97789074 ATAACATAC
1 ATAACTTAT
97789083 ATAACTTAT
1 ATAACTTAT
97789092 ATAACTTAT
1 ATAACTTAT
*
97789101 ATAACTTAG
1 ATAACTTAT
*
97789110 ATAA-ATAT
1 ATAACTTAT
*
97789118 ATAACTTAC
1 ATAACTTAT
*
97789127 ATAACTTAC
1 ATAACTTAT
97789136 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
97789149 ATATTTTATAT
1 ATA-ACT-TAT
*
97789160 CATAATTTAT
1 -ATAACTTAT
*
97789170 ATAACTTAC
1 ATAACTTAT
97789179 ATAACTTAT
1 ATAACTTAT
*
97789188 ATAACTTAG
1 ATAACTTAT
*
97789197 ATAA-ATAT
1 ATAACTTAT
* *
97789205 ATAATTTAC
1 ATAACTTAT
*
97789214 ATAA-ATAT
1 ATAACTTAT
* *
97789222 ATATCATAT
1 ATAACTTAT
* *
97789231 CATAAATTAC
1 -ATAACTTAT
*
97789241 ATAACTTAC
1 ATAACTTAT
97789250 ATAA
1 ATAA
97789254 TACTTAAATA
Statistics
Matches: 176, Mismatches: 39, Indels: 20
0.75 0.17 0.09
Matches are distributed among these distances:
8 17 0.10
9 132 0.75
10 9 0.05
11 8 0.05
12 6 0.03
13 4 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:97789046 original size:27 final size:27
Alignment explanation
Indices: 97789005--97789253 Score: 189
Period size: 27 Copynumber: 9.0 Consensus size: 27
97788995 CATGACTACG
*
97789005 CATATCATAATTTACATAACTTATATAA
1 CATAT-ATAACTTACATAACTTATATAA
*
97789033 CATATATAACTTACATAACTTATACAA
1 CATATATAACTTACATAACTTATATAA
* * * *
97789060 CATACATAACTTATATAACATACATAA
1 CATATATAACTTACATAACTTATATAA
* * *
97789087 CTTATATAACTTATATAACTTAGATAA
1 CATATATAACTTACATAACTTATATAA
*
97789114 -ATATATAACTTACATAACTTACATAATA
1 CATATATAACTTACATAACTTATAT-A-A
* ** *
97789142 CTTAAATATATTTTATATCATAATTTATATAA
1 C--ATATATA-ACT-TA-CATAACTTATATAA
* * * *
97789174 CTTACATAACTTATATAACTTAGATAA
1 CATATATAACTTACATAACTTATATAA
* * *
97789201 -ATATATAATTTACATAA-ATATATAT
1 CATATATAACTTACATAACTTATATAA
* *
97789226 CATATCATAAATTACATAACTTACATAA
1 CATAT-ATAACTTACATAACTTATATAA
97789254 TACTTAAATA
Statistics
Matches: 172, Mismatches: 38, Indels: 22
0.74 0.16 0.09
Matches are distributed among these distances:
25 5 0.03
26 38 0.22
27 89 0.52
28 13 0.08
29 1 0.01
30 4 0.02
31 6 0.03
32 3 0.02
33 3 0.02
34 10 0.06
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (27 bp):
CATATATAACTTACATAACTTATATAA
Found at i:97789178 original size:43 final size:38
Alignment explanation
Indices: 97789005--97789277 Score: 128
Period size: 36 Copynumber: 7.2 Consensus size: 38
97788995 CATGACTACG
* * *
97789005 CATATCATAATTTACATAACTTATAT-AACATATATA-A
1 CATATCATAA-TTACATAACTTACATAAACTTATATATT
* * * * *
97789042 CTTA-CATAACTTATACAACATACAT-AACTTATATA-A
1 CATATCATAA-TTACATAACTTACATAAACTTATATATT
* * *
97789078 CATA-CATAACTTATATAACTTATAT-AACTTAGATA--
1 CATATCATAA-TTACATAACTTACATAAACTTATATATT
*
97789113 AATAT-ATAACTTACATAACTTACATAATACTTAAATATATTT
1 CATATCATAA-TTACATAACTTACATAA-ACTT--ATATA-TT
* * *
97789155 TATATCATAATTTATATAACTTACAT-AACTTATATA-A
1 CATATCATAA-TTACATAACTTACATAAACTTATATATT
* * * * *
97789192 CTTA-GATAAATATATAATTTACATAAA--TATATA-T
1 CATATCATAATTACATAACTTACATAAACTTATATATT
97789226 CATATCATAAATTACATAACTTACATAATACTTAAATATATAT
1 CATATCAT-AATTACATAACTTACATAA-ACTT--ATATAT-T
97789269 CATATCATA
1 CATATCATA
97789278 CATAACTAGT
Statistics
Matches: 186, Mismatches: 31, Indels: 33
0.74 0.12 0.13
Matches are distributed among these distances:
34 9 0.05
35 36 0.19
36 79 0.42
37 10 0.05
39 10 0.05
41 9 0.05
42 6 0.03
43 27 0.15
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (38 bp):
CATATCATAATTACATAACTTACATAAACTTATATATT
Found at i:97794890 original size:21 final size:21
Alignment explanation
Indices: 97794857--97794905 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
97794847 ACAACTTAGA
*
97794857 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
97794878 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
*
97794899 GAAGAGG
1 GCAGAGG
97794906 TACGAGCGAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.51, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:97795395 original size:42 final size:43
Alignment explanation
Indices: 97795305--97795594 Score: 487
Period size: 43 Copynumber: 6.8 Consensus size: 43
97795295 AAAAAAAAGC
*
97795305 GCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAAT
1 GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTCCCACAAAT
97795348 GCCGCTAAAAGCCCTGACCTTTAGCGGCGC-TTTCCCACAAAT
1 GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTCCCACAAAT
97795390 GCCGCTAAAAGCCCTGACCTTTAGCGGCGC-TTTCCCACAAACT
1 GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTCCCACAAA-T
*
97795433 -CCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTCCCACAAAT
* *
97795475 GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTACCACAAAC
1 GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTCCCACAAAT
*
97795518 GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTACCACAAAT
1 GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTCCCACAAAT
* *
97795561 GCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTT
97795595 TTCCAATAAA
Statistics
Matches: 238, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
42 82 0.34
43 156 0.66
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAAGCCCTGACCTTTAGCGGCGCTTTTCCCACAAAT
Found at i:97796838 original size:26 final size:26
Alignment explanation
Indices: 97796805--97796855 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
97796795 ATTAAAAGAA
97796805 AACATTCAATATTTCTA-TTTAATTAT
1 AACATTCAATATTTC-AGTTTAATTAT
97796831 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
97796856 GCATTAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAT
Found at i:97805635 original size:39 final size:39
Alignment explanation
Indices: 97805554--97805743 Score: 319
Period size: 39 Copynumber: 4.9 Consensus size: 39
97805544 TATGGTAACC
* * * *
97805554 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
97805594 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
97805633 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
97805672 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
97805710 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
97805744 CTCGAACATT
Statistics
Matches: 143, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 38 0.27
39 88 0.62
40 17 0.12
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:97805738 original size:77 final size:78
Alignment explanation
Indices: 97805554--97805744 Score: 330
Period size: 77 Copynumber: 2.4 Consensus size: 78
97805544 TATGGTAACC
* *
97805554 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
97805619 CGGGTATCATAGCT
65 CGGGTATCATAGCT
* *
97805633 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
97805698 -GGTATCATAGCT
66 GGGTATCATAGCT
97805710 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
97805745 TCGAACATTC
Statistics
Matches: 107, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
77 46 0.43
78 44 0.41
79 17 0.16
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.24
Consensus pattern (78 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGGTATCATAGCT
Found at i:97813164 original size:39 final size:39
Alignment explanation
Indices: 97813083--97813272 Score: 319
Period size: 39 Copynumber: 4.9 Consensus size: 39
97813073 TATGGTAACC
* * * *
97813083 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
97813123 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
97813162 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
97813201 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
97813239 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
97813273 CTCGAACATT
Statistics
Matches: 143, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 38 0.27
39 88 0.62
40 17 0.12
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:97813267 original size:77 final size:78
Alignment explanation
Indices: 97813083--97813273 Score: 330
Period size: 77 Copynumber: 2.4 Consensus size: 78
97813073 TATGGTAACC
* *
97813083 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
97813148 CGGGTATCATAGCT
65 CGGGTATCATAGCT
* *
97813162 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
97813227 -GGTATCATAGCT
66 GGGTATCATAGCT
97813239 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
97813274 TCGAACATTC
Statistics
Matches: 107, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
77 46 0.43
78 44 0.41
79 17 0.16
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.24
Consensus pattern (78 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGGTATCATAGCT
Found at i:97818302 original size:2 final size:2
Alignment explanation
Indices: 97818295--97818337 Score: 59
Period size: 2 Copynumber: 20.5 Consensus size: 2
97818285 GAAACGATTA
*
97818295 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT ACT AT AT GAT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT -AT AT A
97818338 ATAACTTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
2 33 0.89
3 4 0.11
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:97818501 original size:7 final size:7
Alignment explanation
Indices: 97818489--97818524 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
97818479 TTATATGTAC
97818489 TAATAAA
1 TAATAAA
97818496 TAATAAA
1 TAATAAA
97818503 TAATAAAA
1 TAAT-AAA
*
97818511 TAATATA
1 TAATAAA
97818518 TAATAAA
1 TAATAAA
97818525 ATGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:97818509 original size:40 final size:42
Alignment explanation
Indices: 97818416--97818509 Score: 95
Period size: 40 Copynumber: 2.3 Consensus size: 42
97818406 CATTAGATAT
* * *
97818416 TAAATATTAAATATTTAATAATGATATATGTATTATTTAAAAA
1 TAAATAATAAATATTTAATAAT-ATATATGTACTATATAAAAA
* * *
97818459 TAATTTATAAATTTTTAA-AAT-TATATGTACTA-ATAAATAA
1 TAAATAATAAATATTTAATAATATATATGTACTATATAAA-AA
97818499 TAAATAATAAA
1 TAAATAATAAA
97818510 ATAATATATA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
39 4 0.10
40 21 0.50
42 3 0.07
43 14 0.33
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (42 bp):
TAAATAATAAATATTTAATAATATATATGTACTATATAAAAA
Found at i:97818513 original size:15 final size:15
Alignment explanation
Indices: 97818489--97818526 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
97818479 TTATATGTAC
97818489 TAAT-AAATAATAAA
1 TAATAAAATAATAAA
*
97818503 TAATAAAATAATATA
1 TAATAAAATAATAAA
97818518 TAATAAAAT
1 TAATAAAAT
97818527 GAAGATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAATAAAATAATAAA
Found at i:97818555 original size:7 final size:7
Alignment explanation
Indices: 97818543--97818647 Score: 57
Period size: 7 Copynumber: 15.9 Consensus size: 7
97818533 AATATAGGGA
97818543 ATAATAT
1 ATAATAT
97818550 ATAATA-
1 ATAATAT
97818556 A-AATAT
1 ATAATAT
97818562 ATAATAT
1 ATAATAT
97818569 ATAATA-
1 ATAATAT
**
97818575 A-AAGCT
1 ATAATAT
97818581 ATAA-AT
1 ATAATAT
*
97818587 AAAATAT
1 ATAATAT
*
97818594 ATAAAAT
1 ATAATAT
97818601 ATAA-AT
1 ATAATAT
97818607 A-ACATGAT
1 ATA-AT-AT
97818615 A-AATA-
1 ATAATAT
*
97818620 ATACATAA
1 ATA-ATAT
*
97818628 ATAAAAT
1 ATAATAT
*
97818635 ATTATAT
1 ATAATAT
97818642 ATAATA
1 ATAATA
97818648 ATTTTACATG
Statistics
Matches: 76, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
5 8 0.11
6 14 0.18
7 47 0.62
8 7 0.09
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (7 bp):
ATAATAT
Found at i:97818617 original size:32 final size:31
Alignment explanation
Indices: 97818552--97818636 Score: 91
Period size: 32 Copynumber: 2.6 Consensus size: 31
97818542 AATAATATAT
*
97818552 AATAAAATATATAATATATAATAAAAGCTATA
1 AATAAAATATATAAAATATAATAAAAGC-ATA
*
97818584 AATAAAATATATAAAATATAAATAACATG-ATA
1 AATAAAATATATAAAATAT-AATAA-AAGCATA
*
97818616 AATAATACATAAATAAAATAT
1 AATAA-A-ATATATAAAATAT
97818637 TATATATAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
32 26 0.57
33 6 0.13
34 14 0.30
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (31 bp):
AATAAAATATATAAAATATAATAAAAGCATA
Found at i:97818681 original size:19 final size:19
Alignment explanation
Indices: 97818659--97818696 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
97818649 TTTTACATGT
*
97818659 ATAAATAATATTTATAAAA
1 ATAAATAATATATATAAAA
97818678 ATAAATAATATATATAAAA
1 ATAAATAATATATATAAAA
97818697 TATTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATAAATAATATATATAAAA
Found at i:97818714 original size:31 final size:28
Alignment explanation
Indices: 97818665--97818726 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
97818655 ATGTATAAAT
*
97818665 AATATTTATAAAAATAAATAATATATATAA
1 AATATTTAAAAAAATAAAT--TATATATAA
97818695 AATATTTAAAATAAATAAATTATATATAA
1 AATATTTAAAA-AAATAAATTATATATAA
97818724 AAT
1 AAT
97818727 GTATATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.40
30 10 0.33
31 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (28 bp):
AATATTTAAAAAAATAAATTATATATAA
Found at i:97820303 original size:90 final size:90
Alignment explanation
Indices: 97820176--97820580 Score: 591
Period size: 90 Copynumber: 4.5 Consensus size: 90
97820166 AATATTCTTA
** *
97820176 ATCTGCTCCTTGTCAAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCAATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCAATGTAAACAC
* * *
97820241 ACAAATGTCAGAT-TCGTTATCTTTG
66 ACGAATGTCAGATCT-GCTATCTTCG
* * *
97820266 ATCTGCTCCCCGTCTAATACAGAGATGCCACACCTGTCATTTTCGATCTGCTTCAATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCAATGTAAACAC
*
97820331 ACGAATGTCAGATCTGCTATCTTTG
66 ACGAATGTCAGATCTGCTATCTTCG
* * *
97820356 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTCGATCTGCTTCAATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCAATGTAAACAC
97820421 ACGAATGTCAGATCTGCTATCTTCG
66 ACGAATGTCAGATCTGCTATCTTCG
* * * *
97820446 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATTTGTCATCTTCAAT-TGCTTCGATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCAATGTAAACAC
*
97820510 ACGAATGACAGATCTGCTATCTTCG
66 ACGAATGTCAGATCTGCTATCTTCG
** *
97820535 ATCTGCTCCTTGTCTGATACAGAGACGCCAAATCTGTCA-TTTCGAT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGAT
97820581 TTGTTCCCTG
Statistics
Matches: 289, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
88 5 0.02
89 75 0.26
90 208 0.72
91 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (90 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCAATGTAAACAC
ACGAATGTCAGATCTGCTATCTTCG
Found at i:97820314 original size:45 final size:45
Alignment explanation
Indices: 97820176--97820613 Score: 172
Period size: 45 Copynumber: 9.8 Consensus size: 45
97820166 AATATTCTTA
** * *
97820176 ATCTGCTCCTTGTCAAATACAGAGACGCCAAATCTGTCATTTTCG
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATTTTCG
*** * * * * * * *
97820221 ATCTGCTTCAATGT-AAACACACAAATGTCAGAT-TCGTTATCTTT-G
1 ATCTGC-TCCCCGTCTAATACAGAGATGCCAAATCT-GTCAT-TTTCG
* *
97820266 ATCTGCTCCCCGTCTAATACAGAGATGCCACACCTGTCATTTTCG
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATTTTCG
* ** * * * *
97820311 ATCTGCT-TCAATGTAA-ACACACGAATGTCAGATCTG-CTATCTTT-G
1 ATCTGCTCCCCGTCTAATACAGA-G-ATGCCAAATCTGTC-AT-TTTCG
* *
97820356 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTCG
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATTTTCG
* ** * * * * *
97820401 ATCTGCT-TCAATGTAA-ACACACGAATGTCAGATCTG-CTATCTTCG
1 ATCTGCTCCCCGTCTAATACAGA-G-ATGCCAAATCTGTC-ATTTTCG
* * * *
97820446 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATTTGTCATCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATTTTCG
* * * * * *
97820491 AT-TGCT--TCGATGTAA-ACACACGAATGACAGATCTG-CTATCTTCG
1 ATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTGTC-ATTTTCG
** * *
97820535 ATCTGCTCCTTGTCTGATACAGAGACGCCAAATCTGTCA-TTTCG
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATTTTCG
* * * *
97820579 ATTTGTTCCCTGTC-AAGACAGAGATGCCAAATCTG
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTG
97820614 CTATCTACAT
Statistics
Matches: 287, Mismatches: 77, Indels: 60
0.68 0.18 0.14
Matches are distributed among these distances:
42 6 0.02
43 32 0.11
44 59 0.21
45 145 0.51
46 31 0.11
47 14 0.05
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATTTTCG
Found at i:97821508 original size:13 final size:13
Alignment explanation
Indices: 97821490--97821514 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97821480 ATTTTTATTT
97821490 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
97821503 TTTTTTCTTTTT
1 TTTTTTCTTTTT
97821515 TAGAAGTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:97825015 original size:11 final size:11
Alignment explanation
Indices: 97824994--97825028 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
97824984 GACCTGCGGG
97824994 GTACGAAAGAAT
1 GTAC-AAAGAAT
97825006 GTACAAAGAAT
1 GTACAAAGAAT
97825017 GTACAAAGAAT
1 GTACAAAGAAT
97825028 G
1 G
97825029 AATGAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.51, C:0.09, G:0.23, T:0.17
Consensus pattern (11 bp):
GTACAAAGAAT
Found at i:97828541 original size:12 final size:12
Alignment explanation
Indices: 97828524--97828549 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97828514 GGATTTTTGC
97828524 CAATTGTTCCTG
1 CAATTGTTCCTG
97828536 CAATTGTTCCTG
1 CAATTGTTCCTG
97828548 CA
1 CA
97828550 TTTCTTTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.38
Consensus pattern (12 bp):
CAATTGTTCCTG
Done.