Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 37 of 335
Found at i:13598770 original size:18 final size:17
Alignment explanation
Indices: 13598743--13598776 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
13598733 ATTTTTCAAG
13598743 TTTTAAAATTTTGAATT
1 TTTTAAAATTTTGAATT
13598760 TTTTGAAAATTTTGAAT
1 TTTT-AAAATTTTGAAT
13598777 ATGGACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTAAAATTTTGAATT
Found at i:13603157 original size:17 final size:17
Alignment explanation
Indices: 13603127--13603168 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
13603117 GTGAGATTAT
*
13603127 AAAATATAACAATAATTA
1 AAAAAATAACAATAA-TA
*
13603145 AAAGAATAA-AATAATA
1 AAAAAATAACAATAATA
13603161 AAAAAATA
1 AAAAAATA
13603169 TAAAAAACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 9 0.43
17 5 0.24
18 7 0.33
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (17 bp):
AAAAAATAACAATAATA
Found at i:13603171 original size:18 final size:18
Alignment explanation
Indices: 13603127--13603173 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
13603117 GTGAGATTAT
*
13603127 AAAATATAACAATAATTAA
1 AAAATATAA-AATAATAAA
*
13603146 AAGA-ATAAAATAATAAA
1 AAAATATAAAATAATAAA
13603163 AAAATATAAAA
1 AAAATATAAAA
13603174 AACTATTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 11 0.46
18 10 0.42
19 3 0.12
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (18 bp):
AAAATATAAAATAATAAA
Found at i:13604202 original size:2 final size:2
Alignment explanation
Indices: 13604195--13604219 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13604185 TAAAGAGAAA
13604195 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
13604220 AGTGTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:13610407 original size:22 final size:21
Alignment explanation
Indices: 13610382--13610450 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 21
13610372 TAATAACAAC
*
13610382 ATAATAGTAAAATA-ACAGTAAA
1 ATAATAG-AAAATAGAAAG-AAA
13610404 ATAATGAGAAAATAGAAAGAAA
1 ATAAT-AGAAAATAGAAAGAAA
* * *
13610426 ATAACAGCAAAATAGTAGGAAA
1 ATAATAG-AAAATAGAAAGAAA
13610448 ATA
1 ATA
13610451 GCAAGAAAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 2 0.05
22 33 0.82
23 5 0.12
ACGTcount: A:0.64, C:0.04, G:0.14, T:0.17
Consensus pattern (21 bp):
ATAATAGAAAATAGAAAGAAA
Found at i:13610407 original size:33 final size:33
Alignment explanation
Indices: 13610370--13610459 Score: 83
Period size: 33 Copynumber: 2.7 Consensus size: 33
13610360 ATATCCAAAT
* * *
13610370 AATAATAACAACATA-ATAGTAAAATAACAGTAA
1 AATAATAACAAAATAGAAAG-AAAATAACAGCAA
* *
13610403 AATAATGAGAAAATAGAAAGAAAATAACAGCAA
1 AATAATAACAAAATAGAAAGAAAATAACAGCAA
* ** *
13610436 AATAGTAGGAAAATAGCAAGAAAA
1 AATAATAACAAAATAGAAAGAAAA
13610460 CAACTGATTT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
33 44 0.94
34 3 0.06
ACGTcount: A:0.64, C:0.07, G:0.13, T:0.16
Consensus pattern (33 bp):
AATAATAACAAAATAGAAAGAAAATAACAGCAA
Found at i:13610459 original size:22 final size:21
Alignment explanation
Indices: 13610401--13610459 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
13610391 AAATAACAGT
*
13610401 AAAATAATGAGAAAATAGAAAG
1 AAAATAA-CAGAAAATAGAAAG
* *
13610423 AAAATAACAGCAAAATAGTAGG
1 AAAATAACAG-AAAATAGAAAG
*
13610445 AAAATAGCAAGAAAA
1 AAAATAAC-AGAAAA
13610460 CAACTGATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.66, C:0.05, G:0.17, T:0.12
Consensus pattern (21 bp):
AAAATAACAGAAAATAGAAAG
Found at i:13619687 original size:15 final size:15
Alignment explanation
Indices: 13619667--13619712 Score: 92
Period size: 15 Copynumber: 3.1 Consensus size: 15
13619657 AAATGAGGAG
13619667 TGGTTATGTTTTAAC
1 TGGTTATGTTTTAAC
13619682 TGGTTATGTTTTAAC
1 TGGTTATGTTTTAAC
13619697 TGGTTATGTTTTAAC
1 TGGTTATGTTTTAAC
13619712 T
1 T
13619713 AACTCTAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.54
Consensus pattern (15 bp):
TGGTTATGTTTTAAC
Found at i:13623608 original size:32 final size:32
Alignment explanation
Indices: 13623535--13623601 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
13623525 TCTGAAAAGT
13623535 AAAACAAAAATGAAAAGACATAAAATAAAATA
1 AAAACAAAAATGAAAAGACATAAAATAAAATA
13623567 AAAACAAAAATGAAAAGACATAAAATAAAATA
1 AAAACAAAAATGAAAAGACATAAAATAAAATA
13623599 AAA
1 AAA
13623602 TAAAAAAAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (32 bp):
AAAACAAAAATGAAAAGACATAAAATAAAATA
Found at i:13631483 original size:11 final size:11
Alignment explanation
Indices: 13631467--13631514 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
13631457 CTAAATAAAA
13631467 TAATAAAATAT
1 TAATAAAATAT
13631478 TAAT-AAATAT
1 TAATAAAATAT
* *
13631488 CTTATTAAATAT
1 -TAATAAAATAT
*
13631500 TAATAAAATAA
1 TAATAAAATAT
13631511 TAAT
1 TAAT
13631515 TTTCTAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 6 0.19
11 19 0.61
12 6 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:13631498 original size:30 final size:30
Alignment explanation
Indices: 13631464--13631539 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
13631454 ATACTAAATA
* *
13631464 AAATAATAA-AATATTAATAAATATCTTATT
1 AAATAATAATAA-AATAATAAATATCTAATT
* * *
13631494 AAATATTAATAAAATAATAATTTTCTAATT
1 AAATAATAATAAAATAATAAATATCTAATT
*
13631524 AAATAATTATAAAATA
1 AAATAATAATAAAATA
13631540 TCATCAACAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 36 0.95
31 2 0.05
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (30 bp):
AAATAATAATAAAATAATAAATATCTAATT
Found at i:13632481 original size:15 final size:15
Alignment explanation
Indices: 13632461--13632528 Score: 50
Period size: 14 Copynumber: 4.4 Consensus size: 15
13632451 ATACTATAAA
13632461 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
13632476 ATATTTATAACTGTAAT
1 ATATTTATTA-T-TAAT
* *
13632493 AAACATTTATTATTAAA
1 --ATATTTATTATTAAT
*
13632510 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
13632523 ATATTT
1 ATATTT
13632529 TCAATAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.26
15 11 0.26
16 1 0.02
17 7 0.17
18 1 0.02
19 8 0.19
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:13632482 original size:31 final size:34
Alignment explanation
Indices: 13632447--13632514 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
13632437 ATATTTTAAC
* *
13632447 ATTTAT-ACTAT-A-AAATATTTATTATTAATAT
1 ATTTATAACTATAATAAACATTTATTATTAAAAT
*
13632478 ATTTATAACTGTAATAAACATTTATTATTAAAAT
1 ATTTATAACTATAATAAACATTTATTATTAAAAT
13632512 ATT
1 ATT
13632515 AATATTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 6 0.19
32 4 0.13
33 1 0.03
34 20 0.65
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (34 bp):
ATTTATAACTATAATAAACATTTATTATTAAAAT
Found at i:13632870 original size:41 final size:41
Alignment explanation
Indices: 13632780--13632858 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
13632770 CATTTTAAAT
** * *
13632780 AAAAAATAATTTATTTTATTTTTACCTATAAGTTATTTATA
1 AAAAAATAATTTATTTTACATTAACCTATAAATTATTTATA
13632821 AAAAAATAATTTATTTTACATTAACCTATAAATTATTT
1 AAAAAATAATTTATTTTACATTAACCTATAAATTATTT
13632859 TACAAGAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.48
Consensus pattern (41 bp):
AAAAAATAATTTATTTTACATTAACCTATAAATTATTTATA
Found at i:13638164 original size:24 final size:24
Alignment explanation
Indices: 13638122--13638168 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
13638112 ATATAAGATA
* *
13638122 AAATTAATTTATTTAATAATAGAG
1 AAATTAATTTAATCAATAATAGAG
*
13638146 AAATTAATTTAATCCATAATAGA
1 AAATTAATTTAATCAATAATAGA
13638169 ATCATCTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.38
Consensus pattern (24 bp):
AAATTAATTTAATCAATAATAGAG
Found at i:13638266 original size:24 final size:26
Alignment explanation
Indices: 13638226--13638282 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
13638216 TTTAGAATCC
* *
13638226 AATAAAAAAAAACATTA-TTTTTAGA
1 AATAAAAAAAAACATTACCTTTAAGA
*
13638251 AATAAAAATAAA-ATTACCTTTAAGA
1 AATAAAAAAAAACATTACCTTTAAGA
13638276 AATAAAA
1 AATAAAA
13638283 TATCATAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28
Consensus pattern (26 bp):
AATAAAAAAAAACATTACCTTTAAGA
Found at i:13640776 original size:24 final size:24
Alignment explanation
Indices: 13640725--13640777 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 24
13640715 ACTTTTTTTT
*
13640725 TAAAAATATTTATCTATCATTTAA
1 TAAAAATATTTATCTATCATATAA
13640749 -AAAAA-ATGTTAT-TATCATATAA
1 TAAAAATAT-TTATCTATCATATAA
13640771 CTAAAAA
1 -TAAAAA
13640778 GGGTATGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
22 11 0.44
23 9 0.36
24 5 0.20
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.38
Consensus pattern (24 bp):
TAAAAATATTTATCTATCATATAA
Found at i:13664593 original size:28 final size:28
Alignment explanation
Indices: 13664553--13664608 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
13664543 ATACCCGACC
13664553 AACTTCCATTACTTTTGCATTTGGCTTT
1 AACTTCCATTACTTTTGCATTTGGCTTT
13664581 AACTTCCATTACTTTTGCATTTGGCTTT
1 AACTTCCATTACTTTTGCATTTGGCTTT
13664609 CTTTATTGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.21, G:0.11, T:0.50
Consensus pattern (28 bp):
AACTTCCATTACTTTTGCATTTGGCTTT
Found at i:13681787 original size:27 final size:29
Alignment explanation
Indices: 13681750--13681803 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
13681740 TGAATGCAAT
13681750 TAAAATAGTATATTTTT-ATATTAAAATA
1 TAAAATAGTATATTTTTAATATTAAAATA
* *
13681778 TAAAA-AGTATTTTTTTAATGTTAAAA
1 TAAAATAGTATATTTTTAATATTAAAA
13681804 GTAAAATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (29 bp):
TAAAATAGTATATTTTTAATATTAAAATA
Found at i:13684854 original size:27 final size:27
Alignment explanation
Indices: 13684816--13684870 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
13684806 ACCAAACCGC
*
13684816 TAAACTTAGAACCTCAAATTACCCAAT
1 TAAACTTAGAACATCAAATTACCCAAT
13684843 TAAACTTAGAACATCAAATTACCCAAT
1 TAAACTTAGAACATCAAATTACCCAAT
13684870 T
1 T
13684871 TTTCAAGTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.24, G:0.04, T:0.27
Consensus pattern (27 bp):
TAAACTTAGAACATCAAATTACCCAAT
Found at i:13687922 original size:53 final size:53
Alignment explanation
Indices: 13687841--13687991 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
13687831 CTTACACGGT
* *
13687841 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
13687896 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
13687949 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
13687992 GCGCACTTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:13693376 original size:44 final size:45
Alignment explanation
Indices: 13693286--13693395 Score: 150
Period size: 44 Copynumber: 2.4 Consensus size: 45
13693276 GACAGAACGA
*
13693286 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
13693332 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* **
13693376 AATAATTCATGTAAGTCCAT
1 AATGAGCCATGTAAGTCCAT
13693396 GTCAAAGACA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.61
46 22 0.39
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:13698016 original size:53 final size:53
Alignment explanation
Indices: 13697935--13698085 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
13697925 CTTACACGGT
* *
13697935 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
13697990 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
13698043 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
13698086 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:13701001 original size:46 final size:44
Alignment explanation
Indices: 13700897--13701004 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
13700887 TGTCTTTGAC
** * * *
13700897 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
13700941 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
13700987 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
13701005 TTTCCGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:13705630 original size:35 final size:35
Alignment explanation
Indices: 13705603--13705768 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
13705593 CATGGCAAAG
*
13705603 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
13705638 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
13705673 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
13705713 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
13705748 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
13705769 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:13705722 original size:75 final size:75
Alignment explanation
Indices: 13705603--13705773 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
13705593 CATGGCAAAG
** *
13705603 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
13705662 CCATACTGAGC
65 CCATACCGAGC
13705673 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
13705738 CATACCGAGT
66 CATACCGAGC
**
13705748 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
13705774 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:13713158 original size:35 final size:35
Alignment explanation
Indices: 13713092--13713257 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
13713082 CATGGCAAAG
13713092 TGTGAAATGTAGGTATGGTA-TATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
*
13713126 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
13713161 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTA-T-T---ATCCATACTGAGT
** * *
13713201 TAAGAAATGTAGGTATGGCATT-TCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTAT-CCATACTGAGT
**
13713236 TGAAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
13713258 TCAATGAGGA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
34 21 0.18
35 62 0.53
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 29 0.25
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
Found at i:13713181 original size:40 final size:40
Alignment explanation
Indices: 13713103--13713218 Score: 122
Period size: 40 Copynumber: 3.0 Consensus size: 40
13713093 GTGAAATGTA
13713103 GGTATGGTA-TATCCATACTGAGTTGTGAAA--T--GTA-
1 GGTATGGTATTATCCATACTGAGTTGTGAAATGTAGGTAT
*
13713137 GGTATGGTATTATCCATACTGAGCTGTGAAATGTAGGTAT
1 GGTATGGTATTATCCATACTGAGTTGTGAAATGTAGGTAT
* **
13713177 GGTAT--TATCAAATCCATACTGAGTTAAGAAATGTAGGTAT
1 GGTATGGTAT--TATCCATACTGAGTTGTGAAATGTAGGTAT
13713217 GG
1 GG
13713219 CATTTCCCAT
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
34 9 0.13
35 20 0.29
37 1 0.01
38 3 0.04
39 3 0.04
40 33 0.48
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (40 bp):
GGTATGGTATTATCCATACTGAGTTGTGAAATGTAGGTAT
Found at i:13713215 original size:75 final size:75
Alignment explanation
Indices: 13713092--13713261 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
13713082 CATGGCAAAG
** *
13713092 TGTGAAATGTAGGTATGG---TAT---ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
13713150 CCATACTGAGC
65 CCATACCGAGC
13713161 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
13713226 CATACCGAGT
66 CATACCGAGC
**
13713236 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
13713262 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
69 18 0.21
72 3 0.03
74 5 0.06
75 61 0.70
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:13718544 original size:46 final size:44
Alignment explanation
Indices: 13718440--13718547 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
13718430 TGTCTTTGAC
** * * *
13718440 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
13718484 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
13718530 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
13718548 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:13719915 original size:75 final size:72
Alignment explanation
Indices: 13719828--13719998 Score: 197
Period size: 75 Copynumber: 2.4 Consensus size: 72
13719818 GTTTTCCTCA
** * * * **
13719828 TTGA-AATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATATCTACATTTCTTAAC
1 TTGATAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
13719891 TCAGTATGG
65 TCAGTAT-G
* *
13719900 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAG
1 --TTGATAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
13719965 CTCAGTATG
64 CTCAGTATG
13719974 --GATAATACCATACCTACATTTCACA
1 TTGATAATACCATACCTACATTTCACA
13719999 CTTTGCCATG
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
70 25 0.29
74 8 0.09
75 53 0.62
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.32
Consensus pattern (72 bp):
TTGATAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATG
Found at i:13719996 original size:35 final size:36
Alignment explanation
Indices: 13719832--13719998 Score: 196
Period size: 35 Copynumber: 4.6 Consensus size: 36
13719822 TCCTCATTGA
** *
13719832 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* * **
13719867 AATGCCATATCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
13719907 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
*
13719942 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
13719977 AATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
13719999 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 26 0.22
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:13727907 original size:34 final size:34
Alignment explanation
Indices: 13727864--13727932 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
13727854 GGTGTAGAAG
13727864 TTAGCATTTGACCCATGTTTTCACTCTTATGGTC
1 TTAGCATTTGACCCATGTTTTCACTCTTATGGTC
13727898 TTAGCATTTGACCCATGTTTTCACTCTTATGGTC
1 TTAGCATTTGACCCATGTTTTCACTCTTATGGTC
13727932 T
1 T
13727933 AGAATAAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.45
Consensus pattern (34 bp):
TTAGCATTTGACCCATGTTTTCACTCTTATGGTC
Found at i:13731512 original size:2 final size:2
Alignment explanation
Indices: 13731505--13731534 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
13731495 ACTATTGTAA
13731505 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13731535 CACAATTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13736562 original size:6 final size:6
Alignment explanation
Indices: 13736551--13736579 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
13736541 TTTGAATTGC
13736551 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
13736580 GCACGATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:13736895 original size:3 final size:3
Alignment explanation
Indices: 13736887--13736912 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
13736877 ATATATTCTT
13736887 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
13736913 TGCAATTCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:13738467 original size:558 final size:558
Alignment explanation
Indices: 13737400--13738428 Score: 1961
Period size: 557 Copynumber: 1.8 Consensus size: 558
13737390 AAGGCTTTTC
13737400 TGTAACGGCCTAATTTTCAGTGGTGTCGGAAATGGTGATTTGAGATCACTAAATTCGACAAATAA
1 TGTAACGGCCTAATTTTCAGTGGTGTCGGAAATGGTGATTTGAGATCACTAAATTCGACAAATAA
13737465 GATTGAACAAGATAGTAATTTAATATTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATG
66 GATTGAACAAGATAGTAATTTAATATTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATG
*
13737530 GTGAAATTAGTGAATTAAAAGAATTTATTAGGTCAAACGGGTCAAAAATGAGGTATCGAGATCTC
131 GTGAAATTAGTGAATTAAAAGAATTTATTAGGTCAAACGGGTCAAAAATGAGGTATCGAGACCTC
13737595 AAAGTTGAAAATCGAGCTATAAATATTTTTATAAATATTTATGGAGTGCCATTGAGTTAGTATTA
196 AAAGTTGAAAATCGAGCTATAAATATTTTTATAAATATTTATGGAGTGCCATTGAGTTAGTATTA
*
13737660 AAGTTCCGTTAGAAAATTTTAACGTTTGGATGGCTAATTAATTAAAAAGGGCTAAATTGAAAATA
261 AAGTTCCGTTAGAAAATTTTAACGTTTGGATGGCTAATTAATTAAAAAGGACTAAATTGAAAATA
*
13737725 GCGCAAAATTTGTTAAATTGTGAGTAAATAGCTTAAGTATTTAAAAAGATGGATTTAAAGAGCAA
326 GCACAAAATTTGTTAAATTGTGAGTAAATAGCTTAAGTATTTAAAAAGATGGATTTAAAGAGCAA
13737790 TTAGACCCAAAGGTTAATGGCTGGACGGTTTGGGTATGAAATAAGCAAGAAAACAATGTGAACAA
391 TTAGACCCAAAGGTTAATGGCTGGACGGTTTGGGTATGAAATAAGCAAGAAAACAATGTGAACAA
* ** *
13737855 GGGGCAAAATTGGAAATAGCATAAAAGTTAATAGTTAAATAATGATGTAATTGAAAAATCTAGAC
456 GGGGCAAAATAGGAAATAGCATAAAACCTAATAGTGAAATAATGATGTAATTGAAAAATCTAGAC
13737920 ATTTCTTCATATTTTCTCAGCTAAAACGCCATAGAAGG
521 ATTTCTTCATATTTTCTCAGCTAAAACGCCATAGAAGG
*
13737958 TGTAACGGCCTAATTTTTAGTGGTGTCGGAAATGGTGATTTGAGATCACTAAATTCGACAAATAA
1 TGTAACGGCCTAATTTTCAGTGGTGTCGGAAATGGTGATTTGAGATCACTAAATTCGACAAATAA
13738023 GATTGAACAAGATAGTAATTTAATATTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATG
66 GATTGAACAAGATAGTAATTTAATATTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATG
13738088 GTGAAATTAGTGAATTAAAAGAATTTATTAGGTCAAACGGGTCAAAAATGAGGTATCGAGACCTC
131 GTGAAATTAGTGAATTAAAAGAATTTATTAGGTCAAACGGGTCAAAAATGAGGTATCGAGACCTC
*
13738153 AAAGTTGAAAATCGAGCTATAAA-ATTTTTATAAATATTTATGGAGTGTCATTGAGTTAGTATTA
196 AAAGTTGAAAATCGAGCTATAAATATTTTTATAAATATTTATGGAGTGCCATTGAGTTAGTATTA
*
13738217 AAGTTTCGTTAGAAAATTTTAACGTTTGGATGGCTAATTAATTAAAAAGGACTAAATTGAAAATA
261 AAGTTCCGTTAGAAAATTTTAACGTTTGGATGGCTAATTAATTAAAAAGGACTAAATTGAAAATA
13738282 GCACAAAATTTGTTAAATTGTGAGTAAATAGCTTAAGTATTTAAAAAGATGGATTTAAAGAGCAA
326 GCACAAAATTTGTTAAATTGTGAGTAAATAGCTTAAGTATTTAAAAAGATGGATTTAAAGAGCAA
13738347 TTAGACCCAAAGGTTAATGGCTGGACGGTTTGGGTATGAAATAAGCAAGAAAACAATGTGAACAA
391 TTAGACCCAAAGGTTAATGGCTGGACGGTTTGGGTATGAAATAAGCAAGAAAACAATGTGAACAA
13738412 GGGGCAAAATAGGAAAT
456 GGGGCAAAATAGGAAAT
13738429 GATATTTAGG
Statistics
Matches: 464, Mismatches: 7, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
557 248 0.53
558 216 0.47
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.30
Consensus pattern (558 bp):
TGTAACGGCCTAATTTTCAGTGGTGTCGGAAATGGTGATTTGAGATCACTAAATTCGACAAATAA
GATTGAACAAGATAGTAATTTAATATTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATG
GTGAAATTAGTGAATTAAAAGAATTTATTAGGTCAAACGGGTCAAAAATGAGGTATCGAGACCTC
AAAGTTGAAAATCGAGCTATAAATATTTTTATAAATATTTATGGAGTGCCATTGAGTTAGTATTA
AAGTTCCGTTAGAAAATTTTAACGTTTGGATGGCTAATTAATTAAAAAGGACTAAATTGAAAATA
GCACAAAATTTGTTAAATTGTGAGTAAATAGCTTAAGTATTTAAAAAGATGGATTTAAAGAGCAA
TTAGACCCAAAGGTTAATGGCTGGACGGTTTGGGTATGAAATAAGCAAGAAAACAATGTGAACAA
GGGGCAAAATAGGAAATAGCATAAAACCTAATAGTGAAATAATGATGTAATTGAAAAATCTAGAC
ATTTCTTCATATTTTCTCAGCTAAAACGCCATAGAAGG
Found at i:13739084 original size:40 final size:35
Alignment explanation
Indices: 13738994--13739160 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
13738984 CATGGCAAAG
13738994 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
13739029 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
*
13739064 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTA-T-T---ATCCATACTGAGC
** * * * *
13739104 TAAGAAATGCAGGTATGGCATT-TCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTAT-CCATACTGAGC
**
13739139 TGAAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
13739161 TCAATGAGGA
Statistics
Matches: 116, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
34 1 0.01
35 83 0.72
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 28 0.24
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:13739132 original size:75 final size:74
Alignment explanation
Indices: 13738994--13739164 Score: 208
Period size: 75 Copynumber: 2.4 Consensus size: 74
13738984 CATGGCAAAG
** * *
13738994 TGTGAAATGTAGGTATGGTA-TT---ATCCATACTGAGCTGTGAAATGTAGGTATGGTATTATCC
1 TGTGAAATGTAGGTATGGTATTTCAAATCCATACTGAGCTAAGAAATGCAGGTATGGCATTATCC
*
13739055 ATACTGAGC
66 ATACCGAGC
*
13739064 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGCAGGTATGGCATT-TC
1 TGTGAAATGTAGGTATGGTATT-TCAAATCCATACTGAGCTAAGAAATGCAGGTATGGCATTAT-
*
13739128 CCATACCGAGT
64 CCATACCGAGC
**
13739139 TGAAAAATGTAGGTATGGTATTTCAA
1 TGTGAAATGTAGGTATGGTATTTCAA
13739165 TGAGGAAAAC
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
70 20 0.23
71 1 0.01
72 1 0.01
74 5 0.06
75 59 0.69
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (74 bp):
TGTGAAATGTAGGTATGGTATTTCAAATCCATACTGAGCTAAGAAATGCAGGTATGGCATTATCC
ATACCGAGC
Found at i:13740759 original size:53 final size:53
Alignment explanation
Indices: 13740618--13740768 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
13740608 ATAAGTGCGC
* **
13740618 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
13740671 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
13740724 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
13740769 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:13747710 original size:53 final size:53
Alignment explanation
Indices: 13747644--13747763 Score: 177
Period size: 53 Copynumber: 2.3 Consensus size: 53
13747634 ATAAGTGCGC
* * *
13747644 CCGTTTAAGACCATAGCTGGGTTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
* * *
13747697 CCTTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
*
13747750 CCGTACAAGACCAT
1 CCGTATAAGACCAT
13747764 GTCTGGGATA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 59 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
Found at i:13747770 original size:53 final size:53
Alignment explanation
Indices: 13747650--13747794 Score: 175
Period size: 53 Copynumber: 2.7 Consensus size: 53
13747640 GCGCCCGTTT
* ** * *
13747650 AAGACCATAGCTGGGTTATGGCATCGGTGCAATGTGATAATGTGACTCCTTAT
1 AAGACCATAGCTGGGATATGGCATCGGTATAATGTGATAATGTGACTCCGTAC
* *
13747703 AAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATTCCGTAC
1 AAGACCATAGCTGGGATATGGCATCGGTATAATGTGATAATGTGACTCCGTAC
* *
13747756 AAGACCAT-GTCTGGGATATGACTTCGGTATGATATGTGA
1 AAGACCATAG-CTGGGATATGGCATCGGTAT-A-ATGTGA
13747795 ACCTGTAAGA
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 1 0.01
53 72 0.90
54 1 0.01
55 6 0.08
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (53 bp):
AAGACCATAGCTGGGATATGGCATCGGTATAATGTGATAATGTGACTCCGTAC
Found at i:13752934 original size:5 final size:5
Alignment explanation
Indices: 13752924--13752951 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
13752914 TCCATGTTAA
13752924 CGGCT CGGCT CGGCT CGGCT CGGCT CGG
1 CGGCT CGGCT CGGCT CGGCT CGGCT CGG
13752952 TGCTAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.39, G:0.43, T:0.18
Consensus pattern (5 bp):
CGGCT
Found at i:13755351 original size:10 final size:11
Alignment explanation
Indices: 13755335--13755364 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
13755325 TAATTCTCAA
13755335 AAAAAGAAAAG
1 AAAAAGAAAAG
13755346 -AAAAGAAAAG
1 AAAAAGAAAAG
13755356 AAAAAGAAA
1 AAAAAGAAA
13755365 GTGGTTTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:13773031 original size:51 final size:51
Alignment explanation
Indices: 13772973--13773076 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
13772963 TAAATAACGA
13772973 ATCATAATTTATGTATAATTTTAATATATGCCCATTTTTATATTTCATTTT
1 ATCATAATTTATGTATAATTTTAATATATGCCCATTTTTATATTTCATTTT
*
13773024 ATCATAATTTATGTATAATTTTAATATATGCCTATTTTTATATTTCATTTT
1 ATCATAATTTATGTATAATTTTAATATATGCCCATTTTTATATTTCATTTT
13773075 AT
1 AT
13773077 ACAAATAATC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.32, C:0.09, G:0.04, T:0.56
Consensus pattern (51 bp):
ATCATAATTTATGTATAATTTTAATATATGCCCATTTTTATATTTCATTTT
Found at i:13775850 original size:2 final size:2
Alignment explanation
Indices: 13775843--13775873 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13775833 ACTAAAATTT
13775843 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13775874 GTGTTAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13776839 original size:31 final size:31
Alignment explanation
Indices: 13776793--13776873 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 31
13776783 ACAAACCCAT
*
13776793 TTTAACGTTAGAGTGACTAAAATTAAGAACTTA
1 TTTAACG--AGAGTGACTAAAATTAACAACTTA
* * *
13776826 TTTAACGAGAGTGATTAAAATTGACAATTTA
1 TTTAACGAGAGTGACTAAAATTAACAACTTA
*
13776857 TCTAAC-ATGAGTGACTA
1 TTTAACGA-GAGTGACTA
13776874 CAATAAATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
30 1 0.02
31 33 0.80
33 7 0.17
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (31 bp):
TTTAACGAGAGTGACTAAAATTAACAACTTA
Found at i:13781298 original size:23 final size:23
Alignment explanation
Indices: 13781268--13781314 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
13781258 TTAAAACTAC
13781268 TTCTTGTTTAGATTAAATTAGAG
1 TTCTTGTTTAGATTAAATTAGAG
13781291 TTCTTGTTTAGATTAAATTAGAG
1 TTCTTGTTTAGATTAAATTAGAG
13781314 T
1 T
13781315 CCTAGTATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.17, T:0.49
Consensus pattern (23 bp):
TTCTTGTTTAGATTAAATTAGAG
Found at i:13782689 original size:26 final size:26
Alignment explanation
Indices: 13782595--13782710 Score: 87
Period size: 25 Copynumber: 4.6 Consensus size: 26
13782585 AATAATGGGT
*
13782595 AGCTC-CAAAAAGCCATTAATCAGGA
1 AGCTCACAAAGAGCCATTAATCAGGA
** * *
13782620 AGCTC-CGGATAGCCA-TATATCGGGA
1 AGCTCACAAAGAGCCATTA-ATCAGGA
** ** *
13782645 ATTTCA-AGCGAGCCATTAATTAGGA
1 AGCTCACAAAGAGCCATTAATCAGGA
* *
13782670 AGCTCACAAAGAGCCTTTAATCGGGA
1 AGCTCACAAAGAGCCATTAATCAGGA
13782696 AGCTCACAAAGAGCC
1 AGCTCACAAAGAGCC
13782711 CTATATCGGG
Statistics
Matches: 69, Mismatches: 18, Indels: 7
0.73 0.19 0.07
Matches are distributed among these distances:
24 2 0.03
25 36 0.52
26 31 0.45
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (26 bp):
AGCTCACAAAGAGCCATTAATCAGGA
Found at i:13782727 original size:26 final size:26
Alignment explanation
Indices: 13782667--13782721 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
13782657 CCATTAATTA
*
13782667 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCACAAAGAGCCTATAATCG
13782693 GGAAGCTCACAAAGAGCCCTAT-ATCG
1 GGAAGCTCACAAAGAG-CCTATAATCG
13782719 GGA
1 GGA
13782722 CACTCATAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCTATAATCG
Found at i:13782812 original size:24 final size:25
Alignment explanation
Indices: 13782785--13782832 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
13782775 GGATGCTCCG
*
13782785 AAGAACTAT-TAACGAGAAGCTCGC
1 AAGAACCATATAACGAGAAGCTCGC
*
13782809 AAGAACCATATAACGGGAAGCTCG
1 AAGAACCATATAACGAGAAGCTCG
13782833 AGAGGGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.15
Consensus pattern (25 bp):
AAGAACCATATAACGAGAAGCTCGC
Found at i:13785387 original size:46 final size:46
Alignment explanation
Indices: 13785320--13785540 Score: 266
Period size: 46 Copynumber: 4.8 Consensus size: 46
13785310 TGTAACCTGC
* *
13785320 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
13785366 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
13785412 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCAT
* *** * * * *
13785458 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
13785505 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
13785541 ATGCCCAAAT
Statistics
Matches: 148, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 112 0.76
47 33 0.22
48 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:13785510 original size:93 final size:92
Alignment explanation
Indices: 13785320--13785545 Score: 289
Period size: 93 Copynumber: 2.4 Consensus size: 92
13785310 TGTAACCTGC
* * * *
13785320 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTTGCATCCATAAGTGAACTCAGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTTTACATCCAT-A-CGAACTCAGA
* * *
13785383 CTCAACTCAACGAGCTCGGGCGTTCGCAT
64 CTCAACTCAACGAGCTCAGACATTCGCAT
*
13785412 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T-CGAACTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCT--TTACATC-CATACGAACTCAG
*
13785475 ACTCAACTCAACGAGTTCAGACATTCGCAT
63 ACTCAACTCAACGAGCTCAGACATTCGCAT
*
13785505 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
13785546 CAAATATCCT
Statistics
Matches: 119, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
92 35 0.29
93 73 0.61
94 3 0.03
96 7 0.06
97 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTTTACATCCATACGAACTCAGACT
CAACTCAACGAGCTCAGACATTCGCAT
Found at i:13785560 original size:46 final size:44
Alignment explanation
Indices: 13785371--13785560 Score: 109
Period size: 46 Copynumber: 4.1 Consensus size: 44
13785361 TGCATCCATA
* * ** ** **
13785371 AGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
13785416 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
13785466 --CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCCCAAATCC-T
13785509 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
13785556 AGTGA
1 AGTGA
13785561 CATGTCACTT
Statistics
Matches: 111, Mismatches: 18, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
45 1 0.01
46 62 0.56
47 26 0.23
48 5 0.05
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:13785905 original size:46 final size:46
Alignment explanation
Indices: 13785838--13786104 Score: 344
Period size: 46 Copynumber: 5.8 Consensus size: 46
13785828 TGTAACCTGC
*
13785838 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
13785884 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
* *
13785930 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
* *
13785976 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGT--TTGCAT
* * * * * *
13786026 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
* *
13786069 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
13786105 ATGCCCAAAT
Statistics
Matches: 195, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
42 1 0.01
43 6 0.03
45 2 0.01
46 150 0.77
47 26 0.13
48 3 0.02
50 6 0.03
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
Found at i:13786388 original size:564 final size:564
Alignment explanation
Indices: 13785320--13786580 Score: 2414
Period size: 564 Copynumber: 2.2 Consensus size: 564
13785310 TGTAACCTGC
* *
13785320 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCAGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACT
13785385 CAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
66 CAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
13785450 GCCTAGTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGA
131 GCCTAGTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGA
13785515 ACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCTAGTGACATGTCACTTGTATCCTAA
196 ACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCTAGTGACATGTCACTTGTATCCTAA
13785580 TCCATTCCTAAGGTTCAACGGGACCTTTTTCCCAATCATGTGTCTCAACCATCTCCTACGGAATG
261 TCCATTCCTAAGGTTCAACGGGACCTTTTTCCCAATCATGTGTCTCAACCATCTCCTACGGAATG
13785645 CTGATACCGAGGGTTAAGTACAAACCTGTTCAAAGTATTCATTTCACGACACTTACCAATACGTC
326 CTGATACCGAGGGTTAAGTACAAACCTGTTCAAAGTATTCATTTCACGACACTTACCAATACGTC
* *
13785710 CCTTTCATCTCTAGTATTCCTCCATTTGAGTAGAATTTTACCCGTTGAACACATTGGAATATTAT
391 CCTTTCATCTCTAGTATTCCTCCATTTGAGTAGAATTTTACCCATTGAACACATTGGAATATAAT
13785775 TCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCAAGCTACCATGTAACCTGCCC
456 TCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCAAGCTACCATGTAACCTGCCC
13785840 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
521 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
13785884 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACT
*
13785949 CAACTTAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
66 CAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
13786014 GCCTAGTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGA
131 GCCTAGTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGA
*
13786079 ACTCGGACTCAACTCAATGAGTTCGGATGCCCAAATATCCTAGTGACATGTCACTTGTATCCTAA
196 ACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCTAGTGACATGTCACTTGTATCCTAA
13786144 TCCATTCCTAAGGTTCAACGGGACCTTTTTCCCAATCATGTGTCTCAACCATCTCCTACGGAATG
261 TCCATTCCTAAGGTTCAACGGGACCTTTTTCCCAATCATGTGTCTCAACCATCTCCTACGGAATG
13786209 CTGATACCGAGGGTTAAGTACAAACCTGTTCAAAGTATTCATTTCACGACACTTACCAATACGTC
326 CTGATACCGAGGGTTAAGTACAAACCTGTTCAAAGTATTCATTTCACGACACTTACCAATACGTC
13786274 CCTTTCATCTCTAGTATTCCTCCATTTGAGTAGAATTTTACCCATTGAACACATTGGAATATAAT
391 CCTTTCATCTCTAGTATTCCTCCATTTGAGTAGAATTTTACCCATTGAACACATTGGAATATAAT
13786339 TCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCAAGCTACCATGTAACCTGCCC
456 TCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCAAGCTACCATGTAACCTGCCC
13786404 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
521 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
*
13786448 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACT
* * * * *
13786513 CAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
66 CAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
13786578 GCC
131 GCC
13786581 CAAATATCCT
Statistics
Matches: 684, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
564 684 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (564 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACT
CAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
GCCTAGTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGA
ACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCTAGTGACATGTCACTTGTATCCTAA
TCCATTCCTAAGGTTCAACGGGACCTTTTTCCCAATCATGTGTCTCAACCATCTCCTACGGAATG
CTGATACCGAGGGTTAAGTACAAACCTGTTCAAAGTATTCATTTCACGACACTTACCAATACGTC
CCTTTCATCTCTAGTATTCCTCCATTTGAGTAGAATTTTACCCATTGAACACATTGGAATATAAT
TCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCAAGCTACCATGTAACCTGCCC
ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
Found at i:13786469 original size:46 final size:46
Alignment explanation
Indices: 13786402--13786575 Score: 285
Period size: 46 Copynumber: 3.8 Consensus size: 46
13786392 TGTAACCTGC
* *
13786402 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
13786448 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * * *
13786494 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
13786540 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
13786576 ATGCCCAAAT
Statistics
Matches: 121, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 121 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:13792890 original size:14 final size:15
Alignment explanation
Indices: 13792873--13792901 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13792863 GAGTATGGTA
13792873 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
13792887 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
13792902 TAGTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:13795093 original size:2 final size:2
Alignment explanation
Indices: 13795086--13795116 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13795076 AAATTTTAAA
13795086 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13795117 AAGGTAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13798420 original size:103 final size:103
Alignment explanation
Indices: 13798288--13798485 Score: 342
Period size: 103 Copynumber: 1.9 Consensus size: 103
13798278 AGTGTTCTTT
* * * *
13798288 GATATTCCCAAGCTAACTCAGTCTCTCTGATCGAGGGTTGATCTTTCTGTGTTCTAACCTATCTG
1 GATACTCCCAAGCTAACTCAGTCTCTCTGATCGAGGGTTGATCTTTATGAGTTCTAACCTATCAG
13798353 AATTAAAACTGAACTATAATGCAACTATGCACACCTTC
66 AATTAAAACTGAACTATAATGCAACTATGCACACCTTC
13798391 GATACTCCCAAGCTAACTCAGTCTCTCTGATCGAGGGTTGATCTTTATGAGTTCTAACCTATCAG
1 GATACTCCCAAGCTAACTCAGTCTCTCTGATCGAGGGTTGATCTTTATGAGTTCTAACCTATCAG
* *
13798456 AATTAAAACTGAAGTATAATGCAATTATGC
66 AATTAAAACTGAACTATAATGCAACTATGC
13798486 CCACTAACGG
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 89 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (103 bp):
GATACTCCCAAGCTAACTCAGTCTCTCTGATCGAGGGTTGATCTTTATGAGTTCTAACCTATCAG
AATTAAAACTGAACTATAATGCAACTATGCACACCTTC
Found at i:13798733 original size:80 final size:79
Alignment explanation
Indices: 13798649--13798803 Score: 229
Period size: 80 Copynumber: 1.9 Consensus size: 79
13798639 GAACTGGATA
** *
13798649 GAGTAAATGAGGGACTTGTTCTGCAAAAAACACTGACACGGATGTGAATGAATTATTTATAAGAC
1 GAGTAAATGAGGGACTTGTTCTGCAAAAAACACTGACACAAATGTGAATGAATGA-TTATAAGAC
13798714 AAGTTCAATCTGATT
65 AAGTTCAATCTGATT
* * * * *
13798729 GAGTAAATGAGGGTCTTGTTCTGCAAAAAGCATTGACACAAATGTGAATGAATGATTGTAAGCCA
1 GAGTAAATGAGGGACTTGTTCTGCAAAAAACACTGACACAAATGTGAATGAATGATTATAAGACA
13798794 AGTTCAATCT
66 AGTTCAATCT
13798804 TCAGTACAGT
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 18 0.27
80 49 0.73
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (79 bp):
GAGTAAATGAGGGACTTGTTCTGCAAAAAACACTGACACAAATGTGAATGAATGATTATAAGACA
AGTTCAATCTGATT
Found at i:13810621 original size:21 final size:21
Alignment explanation
Indices: 13810597--13810638 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
13810587 CAGGATTTGG
13810597 GTTAATTACACCATCTATACT
1 GTTAATTACACCATCTATACT
13810618 GTTAATTACACCATCTATACT
1 GTTAATTACACCATCTATACT
13810639 CGCACTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (21 bp):
GTTAATTACACCATCTATACT
Found at i:13811258 original size:21 final size:21
Alignment explanation
Indices: 13811233--13811285 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
13811223 AGCGGTGGCA
*
13811233 ATGAGATTAGTTACTGTAGCG
1 ATGAGATTAGATACTGTAGCG
* *
13811254 GTGAGATTGGATACTGTAGCG
1 ATGAGATTAGATACTGTAGCG
13811275 ATGAGATTAGA
1 ATGAGATTAGA
13811286 AACAGCGGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (21 bp):
ATGAGATTAGATACTGTAGCG
Found at i:13812339 original size:18 final size:19
Alignment explanation
Indices: 13812304--13812339 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
13812294 ATGATATTAA
13812304 TGATATACCTACAAGGTAG
1 TGATATACCTACAAGGTAG
13812323 TGATATACCTA-AAGGTA
1 TGATATACCTACAAGGTA
13812340 TGAAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (19 bp):
TGATATACCTACAAGGTAG
Found at i:13816917 original size:11 final size:11
Alignment explanation
Indices: 13816901--13816925 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13816891 ATTATCTTTC
13816901 AAGCGTTTCTT
1 AAGCGTTTCTT
13816912 AAGCGTTTCTT
1 AAGCGTTTCTT
13816923 AAG
1 AAG
13816926 TTCCTCCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (11 bp):
AAGCGTTTCTT
Found at i:13824769 original size:26 final size:26
Alignment explanation
Indices: 13824739--13824790 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13824729 AGTAAGGAGT
13824739 GCGCTGCAAAAGTAAGCAAGAAAGAA
1 GCGCTGCAAAAGTAAGCAAGAAAGAA
13824765 GCGCTGCAAAAGTAAGCAAGAAAGAA
1 GCGCTGCAAAAGTAAGCAAGAAAGAA
13824791 ATCACATAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.15, G:0.27, T:0.08
Consensus pattern (26 bp):
GCGCTGCAAAAGTAAGCAAGAAAGAA
Found at i:13826636 original size:30 final size:30
Alignment explanation
Indices: 13826602--13826664 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
13826592 ACTTATTTTA
*
13826602 TTGTTAATTTTGTTATTATTTGATAGACAT
1 TTGTTAATTTTGTTATTATTTGAGAGACAT
*
13826632 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTGAGAGACAT
13826662 TTG
1 TTG
13826665 CTTATTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTGAGAGACAT
Found at i:13826782 original size:18 final size:19
Alignment explanation
Indices: 13826747--13826787 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
13826737 AAAATATTTA
*
13826747 TTTTGATGTTTTTAATAT-
1 TTTTGATGTTTATAATATG
13826765 TTTTGATGTATTAT-ATATG
1 TTTTGATGT-TTATAATATG
13826784 TTTT
1 TTTT
13826788 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (19 bp):
TTTTGATGTTTATAATATG
Found at i:13833681 original size:16 final size:17
Alignment explanation
Indices: 13833660--13833696 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
13833650 TGACTACAAT
*
13833660 ATAAAAAAAA-ATCAAA
1 ATAAAAAAAATACCAAA
13833676 ATAAAAAAAATACCAAA
1 ATAAAAAAAATACCAAA
13833693 ATAA
1 ATAA
13833697 TTTCCTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (17 bp):
ATAAAAAAAATACCAAA
Found at i:13833683 original size:15 final size:16
Alignment explanation
Indices: 13833654--13833696 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
13833644 AATCAATGAC
*
13833654 TACAATATAAAAAAAA
1 TACAAAATAAAAAAAA
13833670 -ATCAAAATAAAAAAAA
1 TA-CAAAATAAAAAAAA
13833686 TACCAAAATAA
1 TA-CAAAATAA
13833697 TTTCCTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 1 0.04
16 13 0.57
17 9 0.39
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.16
Consensus pattern (16 bp):
TACAAAATAAAAAAAA
Found at i:13833684 original size:17 final size:17
Alignment explanation
Indices: 13833657--13833696 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
13833647 CAATGACTAC
*
13833657 AATATAAAAAAAAATCAA
1 AATA-AAAAAAAAACCAA
*
13833675 AATAAAAAAAATACCAA
1 AATAAAAAAAAAACCAA
13833692 AATAA
1 AATAA
13833697 TTTCCTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (17 bp):
AATAAAAAAAAAACCAA
Found at i:13833925 original size:2 final size:2
Alignment explanation
Indices: 13833918--13833942 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13833908 ATGTATAATA
13833918 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
13833943 CACATCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13835586 original size:14 final size:15
Alignment explanation
Indices: 13835544--13835594 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 15
13835534 GATCATCATC
13835544 TAATTAATAAAAATAT
1 TAATT-ATAAAAATAT
**
13835560 TAATTATCTAAAT-T
1 TAATTATAAAAATAT
13835574 TAATTATAGAAATATAT
1 TAATTATA-AAA-ATAT
13835591 TAAT
1 TAAT
13835595 ATTCTAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
14 8 0.29
15 8 0.29
16 7 0.25
17 5 0.18
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (15 bp):
TAATTATAAAAATAT
Found at i:13835592 original size:31 final size:30
Alignment explanation
Indices: 13835544--13835602 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 30
13835534 GATCATCATC
13835544 TAATTAATAAAAATATTAAT-TATCTAAATT
1 TAATTAATAAAAATATTAATAT-TCTAAATT
13835574 TAATT-ATAGAAATATATTAATATTCTAAA
1 TAATTAATA-AAA-ATATTAATATTCTAAA
13835603 ATATGCTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 3 0.12
30 8 0.31
31 14 0.54
32 1 0.04
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (30 bp):
TAATTAATAAAAATATTAATATTCTAAATT
Found at i:13843841 original size:35 final size:34
Alignment explanation
Indices: 13843756--13843847 Score: 114
Period size: 36 Copynumber: 2.6 Consensus size: 34
13843746 CTCAATTAAC
*
13843756 AAGATGACCAAATAGTTTTTCAAACCAATCCATT
1 AAGATGACCAAATAATTTTTCAAACCAATCCATT
*
13843790 ATACAATGACTC-AATAATTTTTCAAACCAATCCAATT
1 A-A-GATGAC-CAAATAATTTTTCAAACCAATCC-ATT
*
13843827 AAGATGACCAAATAATCTTTC
1 AAGATGACCAAATAATTTTTC
13843848 CATCGTAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
34 2 0.04
35 16 0.33
36 26 0.53
37 5 0.10
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (34 bp):
AAGATGACCAAATAATTTTTCAAACCAATCCATT
Found at i:13845449 original size:2 final size:2
Alignment explanation
Indices: 13845442--13845467 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13845432 TACTAGTTTA
13845442 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
13845468 GTCTTTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13847765 original size:6 final size:6
Alignment explanation
Indices: 13847754--13847780 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
13847744 TGCTGAATCT
13847754 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
13847781 TTCGACACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:13847772 original size:51 final size:51
Alignment explanation
Indices: 13847713--13847831 Score: 161
Period size: 51 Copynumber: 2.3 Consensus size: 51
13847703 TTACCGGTAG
13847713 CAGTAACAGTAACAGTATTCAACACAAAAAGTG-CTGAATCTG-TAACAGTAA
1 CAGTAACAGTAACAGTATTCAACACAAAAAGTGTC-GAATC-GATAACAGTAA
* * *
13847764 CAGTAACAGTAACAGTATTCGACACACAAAGTGTCGAATCGATAACTGTAA
1 CAGTAACAGTAACAGTATTCAACACAAAAAGTGTCGAATCGATAACAGTAA
* *
13847815 CGGTAACAGTAATAGTA
1 CAGTAACAGTAACAGTA
13847832 ACAGTAGTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
50 1 0.02
51 59 0.97
52 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.22
Consensus pattern (51 bp):
CAGTAACAGTAACAGTATTCAACACAAAAAGTGTCGAATCGATAACAGTAA
Found at i:13849172 original size:53 final size:53
Alignment explanation
Indices: 13849108--13849236 Score: 197
Period size: 53 Copynumber: 2.4 Consensus size: 53
13849098 TCATACCAAA
* * *
13849108 GCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTATCACATTATATCGAT
1 GCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
* *
13849161 GCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTATCACATTGCACCGAT
1 GCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
13849214 GCCATAGCCCAGCTATGGTCTTA
1 GCCATAGCCCAGCTATGGTCTTA
13849237 AACAGGCACA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
52 1 0.01
53 69 0.99
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (53 bp):
GCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
Found at i:13856358 original size:53 final size:53
Alignment explanation
Indices: 13856288--13856427 Score: 201
Period size: 53 Copynumber: 2.6 Consensus size: 53
13856278 CACATATCAT
* * *
13856288 ACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTATCACATTAT
1 ACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTATCACATTAC
* * *
13856341 ATCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTATCACATTGC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTAC
*
13856394 ACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGG
13856428 GCACACTTAT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 1 0.01
53 77 0.99
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (53 bp):
ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTAC
Found at i:13856383 original size:45 final size:48
Alignment explanation
Indices: 13856332--13856439 Score: 118
Period size: 53 Copynumber: 2.2 Consensus size: 48
13856322 AATCACATTA
*
13856332 TCACATTAT-A-T-CGATGCCATAGCCCAGCTATGGTCTTATACGGAG
1 TCACATTATCATTCCGATGCCATAGCCCAGCTATGGTCTTAAACGGAG
13856377 TCACATTATCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG-G
1 TCACATTAT--CATT---CCGATGCCATAGCCCAGCTATGGTCTTAAACGGAG
13856429 -CACACTTATCA
1 TCACA-TTATCA
13856440 CATATTTTCG
Statistics
Matches: 53, Mismatches: 1, Indels: 13
0.79 0.01 0.19
Matches are distributed among these distances:
45 9 0.17
48 1 0.02
49 1 0.02
50 2 0.04
51 4 0.08
52 5 0.09
53 31 0.58
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
TCACATTATCATTCCGATGCCATAGCCCAGCTATGGTCTTAAACGGAG
Found at i:13859615 original size:13 final size:13
Alignment explanation
Indices: 13859580--13859617 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
13859570 GTTTTGTTTC
13859580 TTTATTTTATTTCA
1 TTTATTTTA-TTCA
*
13859594 TTTATTTTATTCT
1 TTTATTTTATTCA
13859607 TTTATTTTATT
1 TTTATTTTATT
13859618 AACTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTCA
Found at i:13859919 original size:25 final size:24
Alignment explanation
Indices: 13859890--13859971 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 24
13859880 TTAATTTAAT
13859890 TTAATTCATAATAATATATTTATAA
1 TTAATT-ATAATAATATATTTATAA
13859915 TTAATTAATTTAATAATATATTTTATAA
1 TTAATT-A--TAATAATATA-TTTATAA
13859943 TTAAATTAT-AT-ATATATTTACATAA
1 TT-AATTATAATAATATATTT--ATAA
13859968 TTAA
1 TTAA
13859972 AATCTAAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
23 3 0.06
24 7 0.14
25 15 0.30
26 1 0.02
27 10 0.20
28 10 0.20
29 4 0.08
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
TTAATTATAATAATATATTTATAA
Found at i:13859943 original size:24 final size:25
Alignment explanation
Indices: 13859898--13859972 Score: 91
Period size: 24 Copynumber: 3.0 Consensus size: 25
13859888 ATTTAATTCA
*
13859898 TAATAATATATTTATAATTAATTAATT
1 TAATAATATATTTAT-A-TAATTAAAT
13859925 TAATAATATATTT-TATAATTAAAT
1 TAATAATATATTTATATAATTAAAT
*
13859949 T-ATATATATATTTACATAATTAAA
1 TAATA-ATATATTTATATAATTAAA
13859973 ATCTAAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
23 3 0.07
24 17 0.39
25 10 0.23
26 1 0.02
27 13 0.30
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (25 bp):
TAATAATATATTTATATAATTAAAT
Found at i:13859972 original size:25 final size:24
Alignment explanation
Indices: 13859898--13859972 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 24
13859888 ATTTAATTCA
13859898 TAATAATATATTT-ATAATTAATTAATT
1 TAATAATATATTTCATAATT-A--AA-T
*
13859925 TAATAATATATTTTATAATTAAAT
1 TAATAATATATTTCATAATTAAAT
13859949 T-ATATATATATTTACATAATTAAA
1 TAATA-ATATATTT-CATAATTAAA
13859973 ATCTAAAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
23 3 0.07
24 10 0.23
25 11 0.25
27 14 0.32
28 6 0.14
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (24 bp):
TAATAATATATTTCATAATTAAAT
Found at i:13861209 original size:17 final size:17
Alignment explanation
Indices: 13861187--13861219 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13861177 ATTAGTTTGA
13861187 GAAAAA-TAATTTAATAG
1 GAAAAATTAA-TTAATAG
13861204 GAAAAATTAATTAATA
1 GAAAAATTAATTAATA
13861220 AATAAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (17 bp):
GAAAAATTAATTAATAG
Found at i:13868023 original size:2 final size:2
Alignment explanation
Indices: 13868016--13868046 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13868006 AGGCTTAAAC
13868016 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
13868047 GGGGAGGGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:13877454 original size:2 final size:2
Alignment explanation
Indices: 13877447--13877475 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13877437 TAATTTAAAA
13877447 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13877476 AAGTAAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13878439 original size:2 final size:2
Alignment explanation
Indices: 13878434--13878459 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13878424 TAAAAAATAC
13878434 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
13878460 TTCTTACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13879281 original size:19 final size:19
Alignment explanation
Indices: 13879257--13879294 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
13879247 CTCCTTCGAT
13879257 AAAGGAACACATTGAATCA
1 AAAGGAACACATTGAATCA
13879276 AAAGGAACACATTGAATCA
1 AAAGGAACACATTGAATCA
13879295 GTTTTTTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.16
Consensus pattern (19 bp):
AAAGGAACACATTGAATCA
Found at i:13885140 original size:44 final size:45
Alignment explanation
Indices: 13885050--13885178 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
13885040 GACAGAACGA
*
13885050 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
13885096 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
13885140 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
13885179 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:13891442 original size:46 final size:44
Alignment explanation
Indices: 13891383--13891497 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
13891373 ACAGGACAGA
* *
13891383 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
13891429 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
13891473 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
13891498 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:13891478 original size:44 final size:45
Alignment explanation
Indices: 13891383--13891516 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
13891373 ACAGGACAGA
* *
13891383 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
13891429 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
13891473 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
13891517 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:13897559 original size:46 final size:44
Alignment explanation
Indices: 13897500--13897614 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
13897490 ACAGGACAGA
* *
13897500 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
13897546 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
13897590 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
13897615 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:13897595 original size:44 final size:45
Alignment explanation
Indices: 13897500--13897633 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
13897490 ACAGGACAGA
* *
13897500 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
13897546 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
13897590 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
13897634 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:13899948 original size:44 final size:45
Alignment explanation
Indices: 13899858--13899986 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
13899848 GACAGAACGA
*
13899858 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
13899904 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
13899948 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
13899987 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:13901419 original size:2 final size:2
Alignment explanation
Indices: 13901414--13901447 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
13901404 TGTATATACG
13901414 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13901448 GTACAGAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:13903677 original size:12 final size:12
Alignment explanation
Indices: 13903660--13903684 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13903650 AGGGACTTAA
13903660 ATTTATATGTCT
1 ATTTATATGTCT
13903672 ATTTATATGTCT
1 ATTTATATGTCT
13903684 A
1 A
13903685 GAATTCTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (12 bp):
ATTTATATGTCT
Found at i:13914109 original size:44 final size:44
Alignment explanation
Indices: 13914042--13914211 Score: 155
Period size: 44 Copynumber: 3.9 Consensus size: 44
13914032 AGATTCTTTG
* * *
13914042 TCTTTGATTTGCTATTTGTCAATACAGAGATGCCAAATCTGCTA
1 TCTTTGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGCTA
* * *
13914086 TCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATTTGCTA
1 TCTTTGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGCTA
* * * * * * * *
13914130 TCTTTGATCTGTTCCCTATAAACACAGGGGTGCCAAATCTACT-
1 TCTTTGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGCTA
* * * *
13914173 T-TTTCGATTTGTTTTCTGACAATACAGAGATGCCAAATC
1 TCTTT-GATCTGCTCTCTGTCAATACAGAGATGCCAAATC
13914212 ATCTTAGATC
Statistics
Matches: 99, Mismatches: 26, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
42 3 0.03
43 26 0.26
44 70 0.71
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (44 bp):
TCTTTGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGCTA
Found at i:13914659 original size:44 final size:43
Alignment explanation
Indices: 13914596--13914875 Score: 165
Period size: 44 Copynumber: 6.5 Consensus size: 43
13914586 GATTTCAATC
*
13914596 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCATCA-CTTTGAT
* * * ** ** *
13914640 CTGTTTCCCTACTACTTA-GGGGTTAAGATCTGT-AAATTCAGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCATCACTTTGA-T
* * * *
13914682 TTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCATC-ACTTTGAT
* * ** * * *
13914726 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTT-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCATCACTTTGA-T
* * * * *
13914769 CTATTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCATC-ACTTTGAT
* * * * * * ** *
13914813 CTGTTTCCCTGCTGCTTAGTGGGATAAGA-TC-TGCAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCAT-CACTTTGAT
13914855 CTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
13914876 ATTCAAGGTT
Statistics
Matches: 173, Mismatches: 55, Indels: 18
0.70 0.22 0.07
Matches are distributed among these distances:
41 3 0.02
42 41 0.24
43 55 0.32
44 71 0.41
45 3 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGACCCATCACTTTGAT
Found at i:13914705 original size:43 final size:43
Alignment explanation
Indices: 13914639--13914875 Score: 171
Period size: 44 Copynumber: 5.5 Consensus size: 43
13914629 TCATCTTTGA
* *
13914639 TCTGTTTCCCTACTACTTA-GGGGTTAAGATCTGTAAATTCAG
1 TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
* * ***
13914681 TTTGTTACCCTACTGCTTAGGGGGTTAAGACCCT-TCGCCTTC-G
1 TCTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTGT-AAATTCAG
* *
13914724 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAG
1 -TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
* * ** ***
13914768 CCTATTACCCTACTGCTTAGGGGGTTAAGGCCCT-TCGCCTTC-G
1 TCTGTTACCCTACTGCTTAGGGGGTTAA-GATCTGT-AAATTCAG
* * * * * *
13914811 ATCTGTTTCCCTGCTGCTTAGTGGGATAAGATCTG-CAATTCAA
1 -TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
*
13914854 CCTGTTACCCTACTGCTTAGGG
1 TCTGTTACCCTACTGCTTAGGG
13914876 ATTCAAGGTT
Statistics
Matches: 145, Mismatches: 39, Indels: 22
0.70 0.19 0.11
Matches are distributed among these distances:
42 37 0.26
43 46 0.32
44 62 0.43
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (43 bp):
TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
Found at i:13914795 original size:87 final size:87
Alignment explanation
Indices: 13914595--13914903 Score: 417
Period size: 86 Copynumber: 3.6 Consensus size: 87
13914585 TGATTTCAAT
* ** * *
13914595 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTTGATCTGTTTCCCTACTACTTA-G
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGCCTTCGATCTGTTTCCCTACTGCTTAGG
13914659 GGGTTAAGATCTGTAAATTCAG
66 GGGTTAAGATCTGTAAATTCAG
** *
13914681 TTTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCGCCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGCCTTCGATCTGTTTCCCTACTGCTTAGG
*
13914746 GGGTTAAGATCTGTAAATTTAG
66 GGGTTAAGATCTGTAAATTCAG
* * *
13914768 CCTATTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGCCTTCGATCTGTTTCCCTGCTGCTTAGT
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGCCTTCGATCTGTTTCCCTACTGCTTAGG
* * *
13914833 GGGATAAGATCTG-CAATTCAA
66 GGGTTAAGATCTGTAAATTCAG
* ** *
13914854 CCTGTTACCCTACTGCTTA-GGGATTCAAGGTTCTTCGTCTTCGATCTGTT
1 CCTGTTACCCTACTGCTTAGGGGGTT-AAGGCCCTTCGCCTTCGATCTGTT
13914904 ACACCATTCT
Statistics
Matches: 197, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
85 5 0.03
86 99 0.50
87 93 0.47
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (87 bp):
CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGCCTTCGATCTGTTTCCCTACTGCTTAGG
GGGTTAAGATCTGTAAATTCAG
Found at i:13924913 original size:13 final size:14
Alignment explanation
Indices: 13924897--13924932 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
13924887 CAATCTCATA
13924897 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
13924910 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
13924923 TCTC-ATTTCA
1 TCTCAATTTCA
13924933 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:13924922 original size:18 final size:19
Alignment explanation
Indices: 13924884--13924924 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
13924874 TGGTTCATGT
13924884 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
13924903 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
13924921 TTTC
1 TTTC
13924925 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:13925114 original size:39 final size:38
Alignment explanation
Indices: 13925047--13925181 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
13925037 ACCAATATGG
* * *
13925047 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
13925086 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
13925124 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
13925165 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
13925182 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:13925307 original size:16 final size:17
Alignment explanation
Indices: 13925286--13925318 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13925276 CTTTCAATTT
13925286 TTTTAATCAAT-ACATA
1 TTTTAATCAATCACATA
*
13925302 TTTTAATTAATCACATA
1 TTTTAATCAATCACATA
13925319 AATTCATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTTAATCAATCACATA
Found at i:13925446 original size:18 final size:19
Alignment explanation
Indices: 13925420--13925458 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
13925410 TTTCAATTCA
13925420 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
13925439 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
13925457 AT
1 AT
13925459 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:13926788 original size:5 final size:5
Alignment explanation
Indices: 13926778--13926830 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
13926768 TTACTTATTT
* *
13926778 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
13926826 ATATA
1 ATATA
13926831 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:13926794 original size:12 final size:12
Alignment explanation
Indices: 13926777--13926832 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
13926767 TTTACTTATT
13926777 TATATAATATAA
1 TATATAATATAA
13926789 TATATAATATAATA
1 TATATAATAT-A-A
13926803 TACTATAATATAA
1 TA-TATAATATAA
*
13926816 TA-ATAATTTAA
1 TATATAATATAA
13926827 TATATA
1 TATATA
13926833 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:13935678 original size:6 final size:6
Alignment explanation
Indices: 13935667--13935695 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
13935657 GATTGCTCCC
13935667 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
13935696 GCTAAAATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:13936356 original size:21 final size:21
Alignment explanation
Indices: 13936300--13936379 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
13936290 TTGATAGGAT
13936300 TATTATTAGATATAATTTAATAAA
1 TATT-TTA-ATATAATTTAAT-AA
* ** *
13936324 AATAATAA-ATAATTTAATCA
1 TATTTTAATATAATTTAATAA
13936344 TATTTTAATATAATTTAATAA
1 TATTTTAATATAATTTAATAA
*
13936365 TTTTTTAATATAATT
1 TATTTTAATATAATT
13936380 ATTTTTATAA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
20 6 0.13
21 35 0.76
22 1 0.02
23 2 0.04
24 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (21 bp):
TATTTTAATATAATTTAATAA
Found at i:13936373 original size:16 final size:17
Alignment explanation
Indices: 13936352--13936396 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
13936342 CATATTTTAA
*
13936352 TATAATTTAATAATTTT
1 TATAATATAATAATTTT
*
13936369 T-TAATATAATTATTTT
1 TATAATATAATAATTTT
*
13936385 TATAATAAAATA
1 TATAATATAATA
13936397 TTTCAAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATAATATAATAATTTT
Found at i:13937307 original size:34 final size:34
Alignment explanation
Indices: 13937264--13937333 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
13937254 AAGACAACTG
13937264 TACTTTTATTTAAGACTACATCCAATTTTCATTT
1 TACTTTTATTTAAGACTACATCCAATTTTCATTT
13937298 TACTTTTATTTAAGACTACATCCAATTTTCATTT
1 TACTTTTATTTAAGACTACATCCAATTTTCATTT
13937332 TA
1 TA
13937334 ACATATTGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.30, C:0.17, G:0.03, T:0.50
Consensus pattern (34 bp):
TACTTTTATTTAAGACTACATCCAATTTTCATTT
Found at i:13937793 original size:2 final size:2
Alignment explanation
Indices: 13937786--13937814 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13937776 TCTGTCCTTG
13937786 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13937815 CATAAAACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13949346 original size:47 final size:49
Alignment explanation
Indices: 13949269--13949401 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 49
13949259 TGTAACCCGC
*
13949269 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTCACAT
* * *
13949319 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCCGA--CATTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
13949363 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
13949402 TTCAACCATC
Statistics
Matches: 70, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
43 3 0.04
44 5 0.07
45 1 0.01
46 2 0.03
47 56 0.80
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
Found at i:13949854 original size:30 final size:30
Alignment explanation
Indices: 13949820--13949879 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
13949810 CCTTAATACG
13949820 AACTTTGGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGAAAAATTACAC-TTTTGCCCCTA
* * *
13949850 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
13949880 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:13954185 original size:21 final size:20
Alignment explanation
Indices: 13954151--13954190 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
13954141 CCAATTAAAT
*
13954151 CGAAAGAGAAATTACATTAAC
1 CGAAAGACAAATTA-ATTAAC
*
13954172 CGAAAGACACATTAATTAA
1 CGAAAGACAAATTAATTAA
13954191 AATTCAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.20
Consensus pattern (20 bp):
CGAAAGACAAATTAATTAAC
Found at i:13965905 original size:2 final size:2
Alignment explanation
Indices: 13965898--13965933 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
13965888 CTTAGATCTC
13965898 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13965934 AGGTACAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13969073 original size:23 final size:23
Alignment explanation
Indices: 13969046--13969097 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
13969036 TGATTTAAAC
13969046 AAATACTT-ATATTTATATAAT-TA
1 AAATA-TTCATATTT-TATAATATA
*
13969069 AAATATTCATATTTTATATTATA
1 AAATATTCATATTTTATAATATA
13969092 AAATAT
1 AAATAT
13969098 GATTATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
AAATATTCATATTTTATAATATA
Found at i:13969112 original size:6 final size:6
Alignment explanation
Indices: 13969101--13969128 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
13969091 AAAATATGAT
13969101 TATTAA TATTAA TATTAA TATTAA TATT
1 TATTAA TATTAA TATTAA TATTAA TATT
13969129 TTAAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TATTAA
Done.