Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 41 of 335
Found at i:14955279 original size:43 final size:43
Alignment explanation
Indices: 14955225--14955309 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
14955215 TAAATTTAAT
* *
14955225 TATAATTATCAC-ATCTTCTATTTAATTATAATTTTTTTAATTG
1 TATAATTATCACAAT-GTCTATTTAATTATAAATTTTTTAATTG
* *
14955268 TATAATTATCACAATGTCTATTTTATTTTAAATTTTTTAATT
1 TATAATTATCACAATGTCTATTTAATTATAAATTTTTTAATT
14955310 AATAATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 35 0.95
44 2 0.05
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.56
Consensus pattern (43 bp):
TATAATTATCACAATGTCTATTTAATTATAAATTTTTTAATTG
Found at i:14960168 original size:41 final size:41
Alignment explanation
Indices: 14960095--14960174 Score: 97
Period size: 41 Copynumber: 2.0 Consensus size: 41
14960085 TCAAAACCAT
* * **
14960095 AAAGTTACCAACTTATCATAAAGTTATTAAAATTAAATTAG
1 AAAGTTACCAACTTACCATAAAGATACAAAAATTAAATTAG
** *
14960136 AAAGTTACCAACTTACCATAGGGATACAAAAATTTAATT
1 AAAGTTACCAACTTACCATAAAGATACAAAAATTAAATT
14960175 TGTATATAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (41 bp):
AAAGTTACCAACTTACCATAAAGATACAAAAATTAAATTAG
Found at i:14961426 original size:11 final size:11
Alignment explanation
Indices: 14961410--14961434 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14961400 TAATTCACAA
14961410 AAAAAAAAAAG
1 AAAAAAAAAAG
14961421 AAAAAAAAAAG
1 AAAAAAAAAAG
14961432 AAA
1 AAA
14961435 GCAAGTTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:14961742 original size:16 final size:15
Alignment explanation
Indices: 14961710--14961748 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
14961700 TTTATAAAAG
* *
14961710 TTTCAAATTTTTATT
1 TTTCAAAATTATATT
14961725 TTTCAAAATTATATT
1 TTTCAAAATTATATT
14961740 TTTCTAAAA
1 TTTC-AAAA
14961749 AAAATATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTCAAAATTATATT
Found at i:14964284 original size:25 final size:26
Alignment explanation
Indices: 14964249--14964311 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
14964239 CAATGGTGAA
14964249 AAATAAAGTAA-ATTCGTTCTTCTTTG
1 AAAT-AAGTAATATTCGTTCTTCTTTG
* * *
14964275 AAATAAGTAATTTTTGTTTTTCTTTG
1 AAATAAGTAATATTCGTTCTTCTTTG
*
14964301 GAATAAGTAAT
1 AAATAAGTAAT
14964312 TGAATAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 6 0.19
26 26 0.81
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.46
Consensus pattern (26 bp):
AAATAAGTAATATTCGTTCTTCTTTG
Found at i:14964663 original size:16 final size:17
Alignment explanation
Indices: 14964630--14964697 Score: 61
Period size: 17 Copynumber: 4.1 Consensus size: 17
14964620 ATATGTTACG
14964630 TTAATAAATAATTTAAAAA
1 TTAATAAA-AA-TTAAAAA
*
14964649 TT-ATAAAAATTAAAAT
1 TTAATAAAAATTAAAAA
*
14964665 TTAATAAAAA-T-AAAG
1 TTAATAAAAATTAAAAA
* *
14964680 TTCATAAAAATTTAAAA
1 TTAATAAAAATTAAAAA
14964697 T
1 T
14964698 AATTAGCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
15 12 0.29
16 10 0.24
17 13 0.31
18 5 0.12
19 2 0.05
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (17 bp):
TTAATAAAAATTAAAAA
Found at i:14967690 original size:113 final size:114
Alignment explanation
Indices: 14967492--14967710 Score: 422
Period size: 113 Copynumber: 1.9 Consensus size: 114
14967482 CCATCAAGAA
*
14967492 ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGTCCCGAGTGCCTACCTGA
1 ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGACCCGAGTGCCTACCTGA
14967557 ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCT-GTCATTAGAGGAGT
66 ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCTCGTCATTAGAGGAGT
14967605 ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGACCCGAGTGCCTACCTGA
1 ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGACCCGAGTGCCTACCTGA
14967670 ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCTCGTCATT
66 ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCTCGTCATT
14967711 CCCATGCTTC
Statistics
Matches: 104, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
113 98 0.94
114 6 0.06
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (114 bp):
ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGACCCGAGTGCCTACCTGA
ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCTCGTCATTAGAGGAGT
Found at i:14971183 original size:22 final size:21
Alignment explanation
Indices: 14971157--14971217 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
14971147 ATCTAAATTC
*
14971157 AAATTAAATAATAAAATTATCT
1 AAATTAAAT-ATAAAATTATAT
* *
14971179 AAATTTAAGTATAAAAATATAT
1 AAA-TTAAATATAAAATTATAT
*
14971201 AAATATTAATATAAAAT
1 AAAT-TAAATATAAAAT
14971218 ATTTTTATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 1 0.03
22 25 0.81
23 5 0.16
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
AAATTAAATATAAAATTATAT
Found at i:14976049 original size:25 final size:24
Alignment explanation
Indices: 14976015--14976062 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
14976005 ATGTATTAAA
* *
14976015 ATATTTTAATAGTTATATAATAAC
1 ATATTTTAATAATTAAATAATAAC
14976039 ATATATTTAATAATTAAATAATAA
1 ATAT-TTTAATAATTAAATAATAA
14976063 TTTGAATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (24 bp):
ATATTTTAATAATTAAATAATAAC
Found at i:14981883 original size:11 final size:12
Alignment explanation
Indices: 14981864--14981892 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
14981854 GGTAATAAAC
14981864 AAAAGATAAAAT
1 AAAAGATAAAAT
14981876 AAAA-ATAAAAT
1 AAAAGATAAAAT
14981887 AAAAGA
1 AAAAGA
14981893 ATGAATTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAAGATAAAAT
Found at i:14984991 original size:26 final size:24
Alignment explanation
Indices: 14984947--14984996 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
14984937 ATTTGTTTTA
*
14984947 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
14984971 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
14984997 TTTTTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:14993692 original size:31 final size:31
Alignment explanation
Indices: 14993654--14993738 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
14993644 CACTTAATTT
*
14993654 AAAAAATTATAATTTGA-TCATTGAACTATTC
1 AAAAAATTAT-ATTTAAGTCATTGAACTATTC
*
14993685 AAAAAATTATCTTTAAGTCATTGAACTATTC
1 AAAAAATTATATTTAAGTCATTGAACTATTC
**
14993716 AAAAAAAAATTATTTAAGTCATT
1 AAAAAATTA-TATTTAAGTCATT
14993739 AGACCATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
30 4 0.09
31 31 0.66
32 12 0.26
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (31 bp):
AAAAAATTATATTTAAGTCATTGAACTATTC
Found at i:15004629 original size:18 final size:18
Alignment explanation
Indices: 15004606--15004670 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
15004596 GGAGTAAAGA
15004606 GGGAAAAGTAAAAGTTTG
1 GGGAAAAGTAAAAGTTTG
*
15004624 GGGAAAAATAAAAAGTTT-
1 GGGAAAAGT-AAAAGTTTG
* *
15004642 -TGAAGAGTAAAAGTTTG
1 GGGAAAAGTAAAAGTTTG
15004659 AGGGAAAA-TAAA
1 -GGGAAAAGTAAA
15004671 TAAAGGGGGT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 8 0.22
17 5 0.14
18 12 0.32
19 12 0.32
ACGTcount: A:0.51, C:0.00, G:0.28, T:0.22
Consensus pattern (18 bp):
GGGAAAAGTAAAAGTTTG
Found at i:15006433 original size:13 final size:13
Alignment explanation
Indices: 15006417--15006442 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15006407 TTTAAAAAAT
15006417 TTAATTTTATTTA
1 TTAATTTTATTTA
15006430 TTAATTTTATTTA
1 TTAATTTTATTTA
15006443 AAAAAATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTAATTTTATTTA
Found at i:15006461 original size:32 final size:33
Alignment explanation
Indices: 15006391--15006461 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 33
15006381 GTGTATTTAG
* *
15006391 AATTTATTTATTTTTATTTAAAAAATTTAATTT
1 AATTTATTTAATTTTATTTAAAAAATTTAATTA
* *
15006424 TATTTA-TTAATTTTATTTAAAAAAATTT-GTTA
1 AATTTATTTAATTTTATTT-AAAAAATTTAATTA
15006456 AATTTA
1 AATTTA
15006462 ATAGTGTGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
32 18 0.56
33 14 0.44
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (33 bp):
AATTTATTTAATTTTATTTAAAAAATTTAATTA
Found at i:15007416 original size:16 final size:16
Alignment explanation
Indices: 15007395--15007438 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
15007385 ATGTGAAATT
15007395 TAATATTTTATTAAAA
1 TAATATTTTATTAAAA
*
15007411 TAATATTTTAATTAAGA
1 TAATATTTT-ATTAAAA
*
15007428 TCAT-TTTTATT
1 TAATATTTTATT
15007439 TAATAAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 13 0.52
17 9 0.36
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (16 bp):
TAATATTTTATTAAAA
Found at i:15016174 original size:2 final size:2
Alignment explanation
Indices: 15016162--15016197 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
15016152 ATAATTTAGA
*
15016162 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15016198 CATACCCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:15017683 original size:47 final size:47
Alignment explanation
Indices: 15017630--15017721 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
15017620 ATAAAATGTG
15017630 AAATGTAGGTATGGAATTTCAATGGAAATCCATACTGAGTTATGGCA
1 AAATGTAGGTATGGAATTTCAATGGAAATCCATACTGAGTTATGGCA
*
15017677 AAATGTATGTATGGAATTTCAATGGAAATCCATACTGAGTTATGG
1 AAATGTAGGTATGGAATTTCAATGGAAATCCATACTGAGTTATGG
15017722 TACAGTGAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.32
Consensus pattern (47 bp):
AAATGTAGGTATGGAATTTCAATGGAAATCCATACTGAGTTATGGCA
Found at i:15017846 original size:34 final size:33
Alignment explanation
Indices: 15017766--15017850 Score: 100
Period size: 34 Copynumber: 2.5 Consensus size: 33
15017756 ATGGCAAAAA
*
15017766 TGTGAATGTAGGTATGGCATTTCCCGTACCGAG
1 TGTGAATGTAGGTATGGCATTTCCCATACCGAG
* *
15017799 TGATGGAACGTAGGTATGGCA-TTCCCATACTGAG
1 TG-T-GAATGTAGGTATGGCATTTCCCATACCGAG
15017833 TTGTGAAATGTAGGTATG
1 -TGTG-AATGTAGGTATG
15017851 ATATTTCAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
33 3 0.07
34 24 0.55
35 17 0.39
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.31
Consensus pattern (33 bp):
TGTGAATGTAGGTATGGCATTTCCCATACCGAG
Found at i:15019467 original size:15 final size:17
Alignment explanation
Indices: 15019437--15019469 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
15019427 TGACTATCAT
15019437 AATATAATATATTTATA
1 AATATAATATATTTATA
15019454 AATA-AATATA-TTATA
1 AATATAATATATTTATA
15019469 A
1 A
15019470 CATTTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 6 0.38
17 4 0.25
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATATAATATATTTATA
Found at i:15022437 original size:34 final size:34
Alignment explanation
Indices: 15022399--15022470 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
15022389 ATCCTGGTAA
*
15022399 ATTTTTT-TGAATGATTTTTTGTTTCTTCTTTTAG
1 ATTTTTTCTGAATGA-TTTTTGTTTCTTATTTTAG
15022433 ATTTTTTCTGAATGATTTTTGTTTCTTATTTTAG
1 ATTTTTTCTGAATGATTTTTGTTTCTTATTTTAG
15022467 ATTT
1 ATTT
15022471 ATGATCTTGA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.17, C:0.06, G:0.11, T:0.67
Consensus pattern (34 bp):
ATTTTTTCTGAATGATTTTTGTTTCTTATTTTAG
Found at i:15026868 original size:47 final size:47
Alignment explanation
Indices: 15026759--15026869 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
15026749 CCGGGATAAG
*
15026759 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
15026806 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
15026853 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
15026870 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:15034123 original size:47 final size:47
Alignment explanation
Indices: 15034014--15034124 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
15034004 CCGGGATAAG
*
15034014 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
15034061 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
15034108 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
15034125 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:15041196 original size:17 final size:19
Alignment explanation
Indices: 15041176--15041213 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
15041166 CAGGGGAAGG
15041176 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
15041193 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
15041212 AA
1 AA
15041214 TTGAAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:15042478 original size:12 final size:12
Alignment explanation
Indices: 15042461--15042491 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
15042451 GAAGCAGGGG
15042461 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
15042473 AGAAAAAGGGAA
1 AGAAAAAGAGAA
15042485 AGAAAAA
1 AGAAAAA
15042492 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:15045538 original size:16 final size:16
Alignment explanation
Indices: 15045517--15045550 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
15045507 CTCAACTACA
15045517 CTCCACAAATCTTGTG
1 CTCCACAAATCTTGTG
15045533 CTCCACAAATCTTGTG
1 CTCCACAAATCTTGTG
15045549 CT
1 CT
15045551 TGAAGGTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (16 bp):
CTCCACAAATCTTGTG
Found at i:15056762 original size:18 final size:18
Alignment explanation
Indices: 15056739--15056774 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15056729 TACTAACATT
15056739 CAGTCATCTCATAATTAG
1 CAGTCATCTCATAATTAG
15056757 CAGTCATCTCATAATTAG
1 CAGTCATCTCATAATTAG
15056775 TAAGTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
CAGTCATCTCATAATTAG
Found at i:15056994 original size:19 final size:19
Alignment explanation
Indices: 15056954--15057011 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
15056944 GTCATGATTC
**
15056954 TATATAAAATTATAATAA-A
1 TATATAAAAACATAA-AATA
*
15056973 TATATAAAAACTTAAAATA
1 TATATAAAAACATAAAATA
* *
15056992 TATGTAAATACATAAAATA
1 TATATAAAAACATAAAATA
15057011 T
1 T
15057012 TAACAAATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 2 0.06
19 30 0.94
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (19 bp):
TATATAAAAACATAAAATA
Found at i:15061582 original size:22 final size:25
Alignment explanation
Indices: 15061541--15061597 Score: 86
Period size: 23 Copynumber: 2.4 Consensus size: 25
15061531 AAATTTTATT
15061541 ATTATAAATATACTACATTC-A-CA
1 ATTATAAATATACTACATTCAATCA
15061564 ATTATAAATATA-TACATTCAATCA
1 ATTATAAATATACTACATTCAATCA
15061588 ATTA-AAATAT
1 ATTATAAATAT
15061598 GAAGTAGTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
22 7 0.22
23 19 0.59
24 6 0.19
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (25 bp):
ATTATAAATATACTACATTCAATCA
Found at i:15067637 original size:25 final size:23
Alignment explanation
Indices: 15067607--15067658 Score: 59
Period size: 25 Copynumber: 2.2 Consensus size: 23
15067597 AATAACCAAA
*
15067607 TTTTAACAGTAGAAATAGATTGTAT
1 TTTTAACAGAAGAAATA-ATT-TAT
* *
15067632 TTTTAAGAGAAGAACTAATTTAT
1 TTTTAACAGAAGAAATAATTTAT
15067655 TTTT
1 TTTT
15067659 TGATCTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 7 0.29
24 3 0.12
25 14 0.58
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
TTTTAACAGAAGAAATAATTTAT
Found at i:15074011 original size:5 final size:5
Alignment explanation
Indices: 15073997--15074026 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
15073987 TTAGTACGCT
15073997 AAAT- AAATA AAATA AAATA AAATA AAATA A
1 AAATA AAATA AAATA AAATA AAATA AAATA A
15074027 GATGAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:15088053 original size:24 final size:25
Alignment explanation
Indices: 15088000--15088053 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
15087990 TTACTTGTTT
15088000 GAAA-TGAAAATTAAAAATTAAAAA
1 GAAATTGAAAATTAAAAATTAAAAA
* *
15088024 GCAATTGAAAA-TAAATATTAAAAA
1 GAAATTGAAAATTAAAAATTAAAAA
*
15088048 TAAATT
1 GAAATT
15088054 ATTCATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (25 bp):
GAAATTGAAAATTAAAAATTAAAAA
Found at i:15091372 original size:30 final size:30
Alignment explanation
Indices: 15091337--15091409 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 30
15091327 TGTTGATCCG
15091337 AATTTATTTTAAATAGTAAAAA-ATACTTT-A
1 AATTTATTTTAAATA-TAAAAATATA-TTTCA
*
15091367 AATTTAAATTTAAATATAAAAATATATTTCA
1 AATTT-ATTTTAAATATAAAAATATATTTCA
15091398 ACATTT-TTTTAA
1 A-ATTTATTTTAA
15091410 CAGTGAAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
30 19 0.51
31 14 0.38
32 4 0.11
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (30 bp):
AATTTATTTTAAATATAAAAATATATTTCA
Found at i:15093855 original size:33 final size:30
Alignment explanation
Indices: 15093794--15093857 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 30
15093784 TTACAAATAA
15093794 TTTATATTAATTATTTAAAAGTATTTAAAT
1 TTTATATTAATTATTTAAAAGTATTTAAAT
* *
15093824 TTTATATTTAATTTATTATAATATTATTTAAAT
1 TTTATA-TTAA-TTATT-TAAAAGTATTTAAAT
15093857 T
1 T
15093858 ATTTTTTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 6 0.21
31 4 0.14
32 5 0.17
33 14 0.48
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (30 bp):
TTTATATTAATTATTTAAAAGTATTTAAAT
Found at i:15115666 original size:2 final size:2
Alignment explanation
Indices: 15115659--15115701 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
15115649 GATCAAGCAA
15115659 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
15115701 T
1 T
15115702 AACAGGGTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:15118202 original size:21 final size:19
Alignment explanation
Indices: 15118176--15118217 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
15118166 TAAAAAACCC
15118176 AAAAATATCATAAAATTATTT
1 AAAAATATCAT-AAATT-TTT
*
15118197 AAAAATTTCATAAATTTTT
1 AAAAATATCATAAATTTTT
15118216 AA
1 AA
15118218 GATTTTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 5 0.25
21 10 0.50
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAAATATCATAAATTTTT
Found at i:15121055 original size:14 final size:14
Alignment explanation
Indices: 15121036--15121082 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
15121026 AACTTTGAAT
15121036 TCTAAATTTTAAAC
1 TCTAAATTTTAAAC
*
15121050 TCTAAATATTAAAC
1 TCTAAATTTTAAAC
*
15121064 TCAAAATTTT-AAC
1 TCTAAATTTTAAAC
15121077 TCTAAA
1 TCTAAA
15121083 CCCTAAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 8 0.28
14 21 0.72
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (14 bp):
TCTAAATTTTAAAC
Found at i:15121134 original size:21 final size:20
Alignment explanation
Indices: 15121098--15121139 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
15121088 AATTAAAATA
15121098 TTAAATTTAAGATTTAAGAT
1 TTAAATTTAAGATTTAAGAT
15121118 TTAAAGTTTAATG-TTTAAGAT
1 TTAAA-TTTAA-GATTTAAGAT
15121139 T
1 T
15121140 CAATATTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 14 0.70
22 1 0.05
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (20 bp):
TTAAATTTAAGATTTAAGAT
Found at i:15123467 original size:18 final size:18
Alignment explanation
Indices: 15123444--15123496 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
15123434 GATAAATCCT
*
15123444 AATCAAGGATTTACTCTC
1 AATCAAGGATTTACTCCC
* *
15123462 AATCAAGGATTGACCCCC
1 AATCAAGGATTTACTCCC
*
15123480 AATCAGGGATTTACTCC
1 AATCAAGGATTTACTCC
15123497 TATATTAACA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (18 bp):
AATCAAGGATTTACTCCC
Found at i:15128012 original size:18 final size:18
Alignment explanation
Indices: 15127969--15128021 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
15127959 ATATATATGG
15127969 TAAAATATATT-T-TACGA
1 TAAAATATATTGTATAC-A
15127986 TAAAA-ATATTGTATACA
1 TAAAATATATTGTATACA
*
15128003 TAAAATATATGGTA-ACA
1 TAAAATATATTGTATACA
15128020 TA
1 TA
15128022 TTAAAGGAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 5 0.16
17 17 0.53
18 10 0.31
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.36
Consensus pattern (18 bp):
TAAAATATATTGTATACA
Found at i:15129264 original size:3 final size:3
Alignment explanation
Indices: 15129250--15129292 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
15129240 TAGACAATAA
*
15129250 AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA- AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
15129293 AAGTGATGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:15130716 original size:17 final size:17
Alignment explanation
Indices: 15130694--15130729 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15130684 AAAGATATTA
15130694 TTCTTTAATTTGCACTT
1 TTCTTTAATTTGCACTT
**
15130711 TTCTTTTGTTTGCACTT
1 TTCTTTAATTTGCACTT
15130728 TT
1 TT
15130730 ATAAATCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.17, G:0.08, T:0.64
Consensus pattern (17 bp):
TTCTTTAATTTGCACTT
Found at i:15138497 original size:14 final size:14
Alignment explanation
Indices: 15138478--15138506 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
15138468 CCCATAAATC
15138478 TTTTTTTT-TTTTA
1 TTTTTTTTATTTTA
15138491 TTTTTTTTATTTTA
1 TTTTTTTTATTTTA
15138505 TT
1 TT
15138507 AAACAAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTTTTTATTTTA
Found at i:15143551 original size:10 final size:10
Alignment explanation
Indices: 15143525--15143553 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
15143515 AAGCAAATAG
15143525 AAAAAAA-AA
1 AAAAAAAGAA
15143534 AAAAAAAGAA
1 AAAAAAAGAA
15143544 AAAAAAAGAA
1 AAAAAAAGAA
15143554 GAAGAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.37
10 12 0.63
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:15147332 original size:4 final size:4
Alignment explanation
Indices: 15147323--15147347 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15147313 TATAAGACAA
15147323 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
15147348 GCAGGTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:15154463 original size:16 final size:18
Alignment explanation
Indices: 15154430--15154466 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
15154420 ATTTTTTGAG
15154430 AAATATTTCTAGACAAAT
1 AAATATTTCTAGACAAAT
*
15154448 AAAT-TTTCTA-ATAAAT
1 AAATATTTCTAGACAAAT
15154464 AAA
1 AAA
15154467 AGATAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 6 0.33
18 4 0.22
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (18 bp):
AAATATTTCTAGACAAAT
Found at i:15154530 original size:27 final size:27
Alignment explanation
Indices: 15154482--15154543 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
15154472 ATAAAAACTC
*
15154482 TATTTTAAAAAATAATTCTTATAT-GA
1 TATTTTTAAAAATAATTCTTATATAGA
*
15154508 TATTTTTAAAAATATATTTTTATATAGA
1 TATTTTTAAAAATA-ATTCTTATATAGA
15154536 -ATTTTTAA
1 TATTTTTAA
15154544 TTTATTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 13 0.41
27 17 0.53
28 2 0.06
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (27 bp):
TATTTTTAAAAATAATTCTTATATAGA
Found at i:15158279 original size:45 final size:45
Alignment explanation
Indices: 15158175--15158279 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 45
15158165 CAACTACTGT
* * *
15158175 TACTGTTACCCTTACTGTTACCGATTCGACACTTGGTGTGTCAAA
1 TACTGTTACCGTTACTATTACAGATTCGACACTTGGTGTGTCAAA
* **
15158220 TACTGTTACCGTTACTATTACAGATTC-AGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTATTACAGATTCGA-CACTTGGTGTGTCAAA
*
15158265 TACTGTTACTGTTAC
1 TACTGTTACCGTTAC
15158280 CGTTACTGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
44 1 0.02
45 51 0.98
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (45 bp):
TACTGTTACCGTTACTATTACAGATTCGACACTTGGTGTGTCAAA
Found at i:15158483 original size:2 final size:2
Alignment explanation
Indices: 15158476--15158508 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
15158466 ATAAGAATGG
15158476 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15158509 TCAAATGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15170502 original size:13 final size:13
Alignment explanation
Indices: 15170484--15170508 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15170474 ATGGTTTAGG
15170484 GTTTTGAAGTGGT
1 GTTTTGAAGTGGT
15170497 GTTTTGAAGTGG
1 GTTTTGAAGTGG
15170509 GTGAAGCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.40, T:0.44
Consensus pattern (13 bp):
GTTTTGAAGTGGT
Found at i:15171046 original size:23 final size:21
Alignment explanation
Indices: 15171016--15171061 Score: 74
Period size: 23 Copynumber: 2.1 Consensus size: 21
15171006 GTGAAACATC
15171016 ATAAACCTTCAAACATTCTTCTT
1 ATAAACCTTCAAAC-TTCTT-TT
15171039 ATAAACCTTCAAACTTCTTTT
1 ATAAACCTTCAAACTTCTTTT
15171060 AT
1 AT
15171062 TGCATCAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.17
22 5 0.22
23 14 0.61
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (21 bp):
ATAAACCTTCAAACTTCTTTT
Found at i:15173450 original size:90 final size:90
Alignment explanation
Indices: 15173349--15173528 Score: 360
Period size: 90 Copynumber: 2.0 Consensus size: 90
15173339 TATTCAACTG
15173349 ATTATTTAAATATTTATATGATTAATTAAAAATATGAAACAAAAGAATAAAAAAATAAATTTATA
1 ATTATTTAAATATTTATATGATTAATTAAAAATATGAAACAAAAGAATAAAAAAATAAATTTATA
15173414 AATGATTTTGAAAATACATCTAATT
66 AATGATTTTGAAAATACATCTAATT
15173439 ATTATTTAAATATTTATATGATTAATTAAAAATATGAAACAAAAGAATAAAAAAATAAATTTATA
1 ATTATTTAAATATTTATATGATTAATTAAAAATATGAAACAAAAGAATAAAAAAATAAATTTATA
15173504 AATGATTTTGAAAATACATCTAATT
66 AATGATTTTGAAAATACATCTAATT
15173529 GTTTGTTGTG
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (90 bp):
ATTATTTAAATATTTATATGATTAATTAAAAATATGAAACAAAAGAATAAAAAAATAAATTTATA
AATGATTTTGAAAATACATCTAATT
Found at i:15176108 original size:27 final size:27
Alignment explanation
Indices: 15176078--15176149 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 27
15176068 GAATTCTATT
15176078 ATCTGATTTCTAATTTTATGCAATAAA
1 ATCTGATTTCTAATTTTATGCAATAAA
**
15176105 ATC-----T-TAATTTTATGCAATATT
1 ATCTGATTTCTAATTTTATGCAATAAA
15176126 ATCTGATTTCTAATTTTATGCAAT
1 ATCTGATTTCTAATTTTATGCAAT
15176150 GATTTTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
21 18 0.49
22 1 0.03
26 1 0.03
27 17 0.46
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.49
Consensus pattern (27 bp):
ATCTGATTTCTAATTTTATGCAATAAA
Found at i:15176168 original size:27 final size:27
Alignment explanation
Indices: 15176074--15176149 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
15176064 GGATGAATTC
15176074 TATTATCTGATTTCTAATTTTATGCAA
1 TATTATCTGATTTCTAATTTTATGCAA
* *
15176101 TA--A---AATCT-TAATTTTATGCAA
1 TATTATCTGATTTCTAATTTTATGCAA
15176122 TATTATCTGATTTCTAATTTTATGCAA
1 TATTATCTGATTTCTAATTTTATGCAA
15176149 T
1 T
15176150 GATTTTTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
21 15 0.38
22 3 0.08
23 1 0.03
25 1 0.03
26 3 0.08
27 16 0.41
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.50
Consensus pattern (27 bp):
TATTATCTGATTTCTAATTTTATGCAA
Found at i:15183572 original size:26 final size:26
Alignment explanation
Indices: 15183543--15183593 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15183533 TTTAAACCAA
15183543 ATTTTTTAAAAGCA-TTTCTCAAAAAT
1 ATTTTTTAAAAGCACTTT-TCAAAAAT
* *
15183569 ATTTTTTCACAGCACTTTTCAAAAA
1 ATTTTTTAAAAGCACTTTTCAAAAA
15183594 CATTGCCAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (26 bp):
ATTTTTTAAAAGCACTTTTCAAAAAT
Found at i:15190660 original size:45 final size:45
Alignment explanation
Indices: 15190610--15190706 Score: 160
Period size: 45 Copynumber: 2.2 Consensus size: 45
15190600 CAATAACAGC
* *
15190610 AACAGTATTCAACACACAAAGTG-CTGAATCTGTAATAGTAACGGT
1 AACAGTATTCAACACACAAAGTGTC-GAATCGGTAACAGTAACGGT
15190655 AACAGTATTCAACACACAAAGTGTCGAATCGGTAACAGTAACGGT
1 AACAGTATTCAACACACAAAGTGTCGAATCGGTAACAGTAACGGT
15190700 AACAGTA
1 AACAGTA
15190707 ACAGTAGTAG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 48 0.98
46 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (45 bp):
AACAGTATTCAACACACAAAGTGTCGAATCGGTAACAGTAACGGT
Found at i:15190701 original size:12 final size:12
Alignment explanation
Indices: 15190684--15190708 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15190674 AGTGTCGAAT
15190684 CGGTAACAGTAA
1 CGGTAACAGTAA
15190696 CGGTAACAGTAA
1 CGGTAACAGTAA
15190708 C
1 C
15190709 AGTAGTAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:15191780 original size:13 final size:13
Alignment explanation
Indices: 15191764--15191815 Score: 70
Period size: 13 Copynumber: 3.9 Consensus size: 13
15191754 TCTTTTTTTA
*
15191764 CTTTGTTTTATTT
1 CTTTATTTTATTT
15191777 CTTTATTTTATTT
1 CTTTATTTTATTT
15191790 CATTTATTTTA-TT
1 C-TTTATTTTATTT
15191803 CTTTTATTTTATT
1 C-TTTATTTTATT
15191816 AACTTTATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
13 25 0.71
14 10 0.29
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.75
Consensus pattern (13 bp):
CTTTATTTTATTT
Found at i:15191795 original size:22 final size:21
Alignment explanation
Indices: 15191753--15191811 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
15191743 TGTCCTTTGC
**
15191753 TTCTTTTTTTACTTTGTTTTAT
1 TTCTTTTTTTA-TTTCATTTAT
15191775 TTCTTTATTTTATTTCATTTAT
1 TTCTTT-TTTTATTTCATTTAT
15191797 TT-TATTCTTTTATTT
1 TTCT-TT-TTTTATTT
15191812 TATTAACTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 26 0.81
23 5 0.16
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.76
Consensus pattern (21 bp):
TTCTTTTTTTATTTCATTTAT
Found at i:15191822 original size:22 final size:22
Alignment explanation
Indices: 15191782--15191823 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15191772 TATTTCTTTA
* *
15191782 TTTTATTTCATTTATTTTATTC
1 TTTTATTTCATTAACTTTATTC
*
15191804 TTTTATTTTATTAACTTTAT
1 TTTTATTTCATTAACTTTAT
15191824 AATAATAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTATTTCATTAACTTTATTC
Found at i:15191822 original size:27 final size:26
Alignment explanation
Indices: 15191756--15191823 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
15191746 CCTTTGCTTC
* *
15191756 TTTTTTTACTTTGTTTTATTTCTTTA
1 TTTTATTACTTTATTTTATTTCTTTA
*
15191782 TTTTATTTCATTTATTTTA-TTCTTTTA
1 TTTTATTAC-TTTATTTTATTTC-TTTA
15191809 TTTTATTAACTTTAT
1 TTTTATT-ACTTTAT
15191824 AATAATAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 10 0.29
27 24 0.69
28 1 0.03
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (26 bp):
TTTTATTACTTTATTTTATTTCTTTA
Found at i:15192107 original size:20 final size:20
Alignment explanation
Indices: 15192084--15192149 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
15192074 GTCTTTATTT
15192084 TAATTTATTTTTAATAATAA
1 TAATTTATTTTTAATAATAA
* *
15192104 TAA-TCATAATTTAATAAT-A
1 TAATTTAT-TTTTAATAATAA
*
15192123 TAAATTATTATTTAATAGAATAA
1 TAATTTATT-TTTAAT--AATAA
15192146 TAAT
1 TAAT
15192150 AATAAATAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
19 7 0.20
20 21 0.60
22 3 0.09
23 4 0.11
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (20 bp):
TAATTTATTTTTAATAATAA
Found at i:15192208 original size:37 final size:35
Alignment explanation
Indices: 15192109--15192211 Score: 91
Period size: 36 Copynumber: 2.8 Consensus size: 35
15192099 AATAATAATC
* * *
15192109 ATAATTTAATAATATAAATTATTATTTAATAGAATAATA
1 ATAA-TTAATAAT-TAAATTA-TATATATTA-AATAAAA
* *
15192148 ATAATAAATAA-TAAATATCTATATACTTAAATAAAA
1 ATAATTAATAATTAAAT-TATATATA-TTAAATAAAA
15192184 AGTAATTAATAATTAAATTATATATATT
1 A-TAATTAATAATTAAATTATATATATT
15192212 TACATAATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
36 19 0.36
37 19 0.36
38 11 0.21
39 4 0.08
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (35 bp):
ATAATTAATAATTAAATTATATATATTAAATAAAA
Found at i:15192754 original size:31 final size:33
Alignment explanation
Indices: 15192718--15192784 Score: 102
Period size: 31 Copynumber: 2.1 Consensus size: 33
15192708 AGCGGCTAGA
*
15192718 GGATTTACTTAGGGTAT-TTTT-GCTGCTATGG
1 GGATTTACTTAGGGTATGTTTTGGCTACTATGG
*
15192749 GGATTTACTTAGGGTTTGTTTTGGCTACTATGG
1 GGATTTACTTAGGGTATGTTTTGGCTACTATGG
15192782 GGA
1 GGA
15192785 ATATTAAGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 16 0.50
32 4 0.12
33 12 0.38
ACGTcount: A:0.16, C:0.09, G:0.31, T:0.43
Consensus pattern (33 bp):
GGATTTACTTAGGGTATGTTTTGGCTACTATGG
Found at i:15193307 original size:19 final size:20
Alignment explanation
Indices: 15193283--15193324 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
15193273 GGTTAGATCA
15193283 TTGTTT-TAAAATTCA-TATT
1 TTGTTTATAAAA-TCATTATT
15193302 TTGTTTATAAAATCATTATT
1 TTGTTTATAAAATCATTATT
15193322 TTG
1 TTG
15193325 AAAGTCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57
Consensus pattern (20 bp):
TTGTTTATAAAATCATTATT
Found at i:15193485 original size:19 final size:20
Alignment explanation
Indices: 15193458--15193496 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
15193448 ATAAATAATT
* *
15193458 ATTTTTAAATTTAT-ATATG
1 ATTTATAAATCTATGATATG
15193477 ATTTATAAATCTATGATATG
1 ATTTATAAATCTATGATATG
15193497 TATGGTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTTATAAATCTATGATATG
Found at i:15194232 original size:128 final size:129
Alignment explanation
Indices: 15194082--15194317 Score: 359
Period size: 128 Copynumber: 1.8 Consensus size: 129
15194072 GAAGATTCAT
* ** * *
15194082 TAAAACAAAGGCAATATTCGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTCG
1 TAAAACAAAGGCAATATCCGATGTTTCAAAATTCGGGGAATAGCGCCCTATCGTACTGGGTTTCG
* *
15194147 ATTTC-CTATTTGTTCAAAATAATCGAATATTCTTTTAGAATTTTTCTTGTGTTTTTCCAAACGC
66 ATTTCTC-ATTTGTTCAAAAAAATCGAATATTCCTTTAGAATTTTTCTTGTGTTTTTCCAAACGC
*
15194211 TAAAAC-AAGGCAATATCCGATGTTTCAAAATTCGGGGAATAGCGCCCTATGGTACTGGGTTTCG
1 TAAAACAAAGGCAATATCCGATGTTTCAAAATTCGGGGAATAGCGCCCTATCGTACTGGGTTTCG
* *
15194275 ATTTCTCGTTTGTTCAAAAAAATCGAATATTCCTTTGGAATTT
66 ATTTCTCATTTGTTCAAAAAAATCGAATATTCCTTTAGAATTT
15194318 CACTCGTGTT
Statistics
Matches: 96, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
128 89 0.93
129 7 0.07
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36
Consensus pattern (129 bp):
TAAAACAAAGGCAATATCCGATGTTTCAAAATTCGGGGAATAGCGCCCTATCGTACTGGGTTTCG
ATTTCTCATTTGTTCAAAAAAATCGAATATTCCTTTAGAATTTTTCTTGTGTTTTTCCAAACGC
Found at i:15197004 original size:19 final size:17
Alignment explanation
Indices: 15196963--15196996 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15196953 TGTATTGATG
* *
15196963 ATAAAATCATGAATATT
1 ATAAAAGCATGAAAATT
15196980 ATAAAAGCATGAAAATT
1 ATAAAAGCATGAAAATT
15196997 GAATAAAATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.29
Consensus pattern (17 bp):
ATAAAAGCATGAAAATT
Found at i:15197152 original size:50 final size:51
Alignment explanation
Indices: 15197075--15197203 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
15197065 GACCATGGCA
* *
15197075 ACAAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
15197126 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
15197176 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
15197204 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 47 0.65
51 25 0.35
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:15197209 original size:45 final size:46
Alignment explanation
Indices: 15197077--15197220 Score: 123
Period size: 50 Copynumber: 3.0 Consensus size: 46
15197067 CCATGGCAAC
* *
15197077 AAGTGATAAA-TGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGA-AAAGTGATAGCTTCGGCTA-AC---TCTGATCAATGACAAATGA
*
15197127 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
1 AAGTGAAAAGTGATAGCTTCGGCTA-AC---TCTGATCAATGACAAATGA
* * *
15197177 CAAGTGAAAAGTGGTAGCTTCGGCT-AC-CTGATCAGTGAAAAATG
1 -AAGTGAAAAGTGATAGCTTCGGCTAACTCTGATCAATGACAAATG
15197221 GTAGCTCTAG
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
45 15 0.18
49 4 0.05
50 44 0.52
51 22 0.26
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (46 bp):
AAGTGAAAAGTGATAGCTTCGGCTAACTCTGATCAATGACAAATGA
Found at i:15197217 original size:31 final size:31
Alignment explanation
Indices: 15197179--15197414 Score: 283
Period size: 31 Copynumber: 7.8 Consensus size: 31
15197169 ACAAATGACA
15197179 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
15197210 AGTGAAAAATGGTAGC-TCTAGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
15197241 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
15197272 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
15197303 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
15197334 AGTAAAAAGTGGTAACTCCGG----CT-A-C
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
15197359 AGTAAAAAATGGTAGC-TCAGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* *
15197390 AGTGAATAGTGGTAGCTTCAGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
15197415 AAGTGACAAG
Statistics
Matches: 175, Mismatches: 18, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
24 1 0.01
25 17 0.10
26 1 0.01
27 2 0.01
29 2 0.01
30 5 0.03
31 141 0.81
32 6 0.03
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:15197371 original size:25 final size:25
Alignment explanation
Indices: 15197333--15197383 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
15197323 GCTACCTGAT
* *
15197333 CAGTAAAAAGTGGTAACTCCGGCTA
1 CAGTAAAAAATGGTAACTCAGGCTA
*
15197358 CAGTAAAAAATGGTAGCTCAGGCTA
1 CAGTAAAAAATGGTAACTCAGGCTA
15197383 C
1 C
15197384 CTGATCAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (25 bp):
CAGTAAAAAATGGTAACTCAGGCTA
Found at i:15197509 original size:47 final size:47
Alignment explanation
Indices: 15197440--15197611 Score: 172
Period size: 47 Copynumber: 3.6 Consensus size: 47
15197430 AGTGATTTCC
*
15197440 GTATAAGACCAT-GTCTGGGATATGGCATCGGTGTGATATATGATACT
1 GTATAAGACCATAG-CTGGGATATGGCATCGGTGTGATATGTGATACT
* * * *
15197487 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGAT-TT
1 GTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACT
* * * *
15197533 GTGTAAGACCATAGATGGGCTATGGCATCGATATGTGATATGTGATTACAT
1 GTATAAGACCATAGCTGGGATATGGCATCG--GTGTGATATGTGA-TAC-T
* *
15197584 G--TAAGACCATAGCTGGGCTATAGCATCG
1 GTATAAGACCATAGCTGGGATATGGCATCG
15197612 ATATATGAAT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
46 26 0.25
47 39 0.38
48 11 0.11
49 26 0.25
51 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.30
Consensus pattern (47 bp):
GTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACT
Found at i:15197629 original size:42 final size:42
Alignment explanation
Indices: 15197583--15197679 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
15197573 TGTGATTACA
*
15197583 TGTAAGACCATAGCTGGGCTATAGCATCGA-TATATGAATATG
1 TGTAAGACCATAGCTAGGCTATAGCATC-ATTATATGAATATG
* * * *
15197625 TGTAAAACCATAGCTAGGTTATGGCATCATTATGTGAATATG
1 TGTAAGACCATAGCTAGGCTATAGCATCATTATATGAATATG
15197667 TGTAAGACCATAG
1 TGTAAGACCATAG
15197680 TTGAACTATG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 47 0.98
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATAGCTAGGCTATAGCATCATTATATGAATATG
Found at i:15200762 original size:3 final size:3
Alignment explanation
Indices: 15200754--15200807 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
15200744 AAATGGTAAG
15200754 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
15200802 TAT TAT
1 TAT TAT
15200808 GGTATTGAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:15202463 original size:13 final size:13
Alignment explanation
Indices: 15202447--15202472 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15202437 CCTTTTCCCC
15202447 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
15202460 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
15202473 TCTCCCCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTCTTTCTTTT
Found at i:15204822 original size:19 final size:19
Alignment explanation
Indices: 15204798--15204835 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
15204788 TTATATTATT
15204798 ATATTTTGAAATAAATTAA
1 ATATTTTGAAATAAATTAA
15204817 ATATTTTGAAATAAATTAA
1 ATATTTTGAAATAAATTAA
15204836 GAAAAGACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
ATATTTTGAAATAAATTAA
Found at i:15205171 original size:13 final size:13
Alignment explanation
Indices: 15205153--15205180 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
15205143 GAGAGCAGGG
15205153 AGAAAAGAAAGAA
1 AGAAAAGAAAGAA
15205166 AGAAAAGAAAGAA
1 AGAAAAGAAAGAA
15205179 AG
1 AG
15205181 GGGGAAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (13 bp):
AGAAAAGAAAGAA
Found at i:15210172 original size:50 final size:51
Alignment explanation
Indices: 15210095--15210223 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
15210085 GACCATGGCA
* * *
15210095 ACAAGTGATAAATGATAGTTTCGGCTACACTTATCTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
15210146 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
15210196 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
15210224 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 45 0.64
51 25 0.36
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:15210230 original size:45 final size:45
Alignment explanation
Indices: 15210129--15210240 Score: 109
Period size: 51 Copynumber: 2.4 Consensus size: 45
15210119 CTACACTTAT
* * *
15210129 CTGATCAAGGACAAGTGAAAGTGATAAGTGATAGCTTCGGCTACA
1 CTGATCAATGACAAATGAAAGTGAAAAGTGATAGCTTCGGCTACA
*
15210174 CTTATTTGATCAATGACAAATGACAAGTGAAAAGTGGTAGCTTCGGCTAC-
1 C-----TGATCAATGACAAATGA-AAGTGAAAAGTGATAGCTTCGGCTACA
* *
15210224 CTGATCAGTGAAAAATG
1 CTGATCAATGACAAATG
15210241 GTAGCTCTAG
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
45 15 0.27
50 16 0.29
51 24 0.44
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (45 bp):
CTGATCAATGACAAATGAAAGTGAAAAGTGATAGCTTCGGCTACA
Found at i:15210237 original size:31 final size:31
Alignment explanation
Indices: 15210199--15210471 Score: 408
Period size: 31 Copynumber: 8.8 Consensus size: 31
15210189 ACAAATGACA
15210199 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
15210230 AGTGAAAAATGGTAGC-TCTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
15210261 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
15210292 AGTGAAAAATGGTAGC-TCTGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
15210323 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
15210354 ACTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
15210385 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
15210416 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
15210447 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
15210472 AAGTGACAAG
Statistics
Matches: 219, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
30 5 0.02
31 208 0.95
32 6 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:15210296 original size:62 final size:62
Alignment explanation
Indices: 15210199--15210471 Score: 474
Period size: 62 Copynumber: 4.4 Consensus size: 62
15210189 ACAAATGACA
15210199 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCTGATC
* *
15210261 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCTGATC
* * *
15210323 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCACTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCTGATC
* *
15210385 AGTGAAAAGTGGTAGCTCCGGCTACCTGATCAGTGAAAAATGGTAGCTCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCTGATC
*
15210447 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
15210472 AAGTGACAAG
Statistics
Matches: 197, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 197 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (62 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCTGATC
Found at i:15210648 original size:49 final size:48
Alignment explanation
Indices: 15210500--15210709 Score: 181
Period size: 47 Copynumber: 4.5 Consensus size: 48
15210490 GATTTCCGTA
* * * * * *
15210500 TAAGACCATATCTGGGATATGACATCG-GTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGAGTGTGATATGTGATTAC-GTG
* ** *
15210547 TAAGATCATATATGGGAC-ATGGCATC-AGTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGG-CTATGGCATCGAGTGTGATATGTGATTACGTG
15210593 TAAGACCATAGCTGGGCTATGGCATCGATGTGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-GTGTGATATGTGATTACGTG
* * *
15210642 TAAGACCATAGTTGGGCTATGGCATCGA---T-ATA--TGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGAGTGTGATATGTGATTACGTG
* *
15210684 TAAGAGCATAGCTGGACTATGGCATC
1 TAAGACCATAGCTGGGCTATGGCATC
15210710 ATTATGTGAA
Statistics
Matches: 138, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
42 31 0.22
44 3 0.02
45 2 0.01
46 23 0.17
47 33 0.24
48 15 0.11
49 31 0.22
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGAGTGTGATATGTGATTACGTG
Found at i:15210685 original size:42 final size:42
Alignment explanation
Indices: 15210639--15210755 Score: 155
Period size: 42 Copynumber: 2.8 Consensus size: 42
15210629 ATGTGATTAC
* *
15210639 GTGTAAGACCATAGTTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGTTGGACTATGGCATCGATATATGAAGAT
* * *
15210681 GTGTAAGAGCATAGCTGGACTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGTTGGACTATGGCATCGA-TATATGAAGAT
* *
15210723 GTGTAAGACCATAGTTGAACTATGACATCGATA
1 GTGTAAGACCATAGTTGGACTATGGCATCGATA
15210756 AAACGAAGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.02
42 62 0.97
43 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGGACTATGGCATCGATATATGAAGAT
Found at i:15213092 original size:46 final size:46
Alignment explanation
Indices: 15213039--15213167 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
15213029 TATTTGGGCA
* *
15213039 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
15213085 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
15213131 CCCGAGCTCGTTGAGTTAAGTCCGAATTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15213168 GCAGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:15215534 original size:53 final size:53
Alignment explanation
Indices: 15215408--15215558 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
15215398 ACAAGTGTGC
* * **
15215408 CCGTTTAAGACCATAGCTAGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
15215461 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
15215514 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
15215559 ACCGTGTAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:15227839 original size:87 final size:87
Alignment explanation
Indices: 15227687--15228039 Score: 337
Period size: 89 Copynumber: 4.1 Consensus size: 87
15227677 CGGTGAATTC
* * * * *
15227687 ACAGATCTTGTCTCCCTAA--AGTTACAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCTTA
1 ACAGATCTTGTCTCCCTAAGCAG-T--AGTGGAGCAAATCGAAGA-AGCAAGCCTTAACCCCCTA
*
15227750 AGTAGTAGGGTAACAGGCTAAAGATT
62 AGTAGTAGGGTAACAGGCTGAAGATT
* * *
15227776 ACAGATCTTGTCCCCCTAAACAGTAATGGAGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTA
1 ACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTA
*
15227841 GTAGGGTAATAGGCTGAAGATT
66 GTAGGGTAACAGGCTGAAGATT
** ** ** * * * **
15227863 GTAGATCTTGTCTCCCTGAAGCAACAGTGGAATAGATCAAACAAAGTGAGCCTTAACCCCCTAAG
1 ACAGATCTTGTCTCCCT-AAGCAGTAGTGGAGCAAATCGAA-GAAGCAAGCCTTAACCCCCTAAG
*
15227928 TAGTAGGGTAACAGG-T--TG--T
64 TAGTAGGGTAACAGGCTGAAGATT
* **
15227947 --AGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCCCCTAAGT
1 ACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGA-AGCAAGCCTTAACCCCCTAAGT
*
15228010 AGTAGGGTAACAGGCCGAAGATT
65 AGTAGGGTAACAGGCTGAAGATT
15228033 AACAGAT
1 -ACAGAT
15228040 TTTATCTTCC
Statistics
Matches: 216, Mismatches: 35, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
80 1 0.00
81 52 0.24
82 15 0.07
84 2 0.01
86 2 0.01
87 55 0.25
88 30 0.14
89 56 0.26
90 1 0.00
91 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (87 bp):
ACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTA
GTAGGGTAACAGGCTGAAGATT
Found at i:15227936 original size:89 final size:88
Alignment explanation
Indices: 15227689--15228032 Score: 335
Period size: 87 Copynumber: 4.0 Consensus size: 88
15227679 GTGAATTCAC
** * ** *
15227689 AGATCTTGTCTCCCTAAAGTTACAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCTTAAGTA
1 AGATCTTGTCTCCCT-AAGCAACAGTGGAACAAATCAAAGAAAGCAAGCCTTAACCCCCTAAGTA
* **
15227754 GTAGGGTAACAGGCTAAAGATTAC
65 GTAGGGTAACAGGCTGAAGATTGT
* * ** * * *
15227778 AGATCTTGTCCCCCTAAACAGTAATGGAGCAAATCGAAG-AAGCAAGCCTTAACCCCCTAAGTAG
1 AGATCTTGTCTCCCTAAGCAACAGTGGAACAAATCAAAGAAAGCAAGCCTTAACCCCCTAAGTAG
*
15227842 TAGGGTAATAGGCTGAAGATTGT
66 TAGGGTAACAGGCTGAAGATTGT
* * * **
15227865 AGATCTTGTCTCCCTGAAGCAACAGTGGAATAGATCAAACAAAGTGAGCCTTAACCCCCTAAGTA
1 AGATCTTGTCTCCCT-AAGCAACAGTGGAACAAATCAAAGAAAGCAAGCCTTAACCCCCTAAGTA
15227930 GTAGGGTAACA----G--G-TTGT
65 GTAGGGTAACAGGCTGAAGATTGT
** * * ** **
15227947 AGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCCCCTAAGTAG
1 AGATCTTGTCTCCCTAAGCAACAGTGGAACAAATCAAAGAAAGCAAGCCTTAACCCCCTAAGTAG
*
15228012 TAGGGTAACAGGCCGAAGATT
66 TAGGGTAACAGGCTGAAGATT
15228033 AACAGATTTT
Statistics
Matches: 207, Mismatches: 39, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
81 51 0.25
82 19 0.09
83 1 0.00
85 2 0.01
87 56 0.27
88 32 0.15
89 46 0.22
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (88 bp):
AGATCTTGTCTCCCTAAGCAACAGTGGAACAAATCAAAGAAAGCAAGCCTTAACCCCCTAAGTAG
TAGGGTAACAGGCTGAAGATTGT
Found at i:15227997 original size:81 final size:82
Alignment explanation
Indices: 15227861--15228023 Score: 238
Period size: 81 Copynumber: 2.0 Consensus size: 82
15227851 AGGCTGAAGA
* *
15227861 TTGTAGATCTTGTCTCCCTGAAGCAACAGTGGAATAGATCAAACAAAGTGAGCCTTAACCCCCTA
1 TTGTAGATCTTGTCTCCCTGAAGCAACAGTGGAACAAATCAAACAAAGTGAGCCTTAACCCCCTA
15227926 AGTAGTAGGGTAACAGG
66 AGTAGTAGGGTAACAGG
** * * * **
15227943 TTGTAGATCTTGTCTCCCT-AAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCCCCTA
1 TTGTAGATCTTGTCTCCCTGAAGCAACAGTGGAACAAATCAAACAAAGTGAGCCTTAACCCCCTA
15228007 AGTAGTAGGGTAACAGG
66 AGTAGTAGGGTAACAGG
15228024 CCGAAGATTA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
81 53 0.74
82 19 0.26
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (82 bp):
TTGTAGATCTTGTCTCCCTGAAGCAACAGTGGAACAAATCAAACAAAGTGAGCCTTAACCCCCTA
AGTAGTAGGGTAACAGG
Found at i:15228136 original size:45 final size:45
Alignment explanation
Indices: 15228042--15228157 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
15228032 TAACAGATTT
* * *
15228042 TATCTTCCTGAAGTTGCAGTGGAGC-GGATCAAAATCACAATCCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGGATCAAAATCACAAACCA
* * * *
15228086 TATCTCTCTGAAGCTGTAGTAGAGCAGGAT-AAAATACACAAACCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGGATCAAAAT-CACAAACCA
15228131 TATCTCCCTGAAGTTGCAGTGGAGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAG
15228158 TTGCAGTAGA
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 25 0.42
45 34 0.58
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (45 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGGATCAAAATCACAAACCA
Found at i:15228161 original size:14 final size:14
Alignment explanation
Indices: 15228142--15228171 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15228132 ATCTCCCTGA
*
15228142 AGTTGCAGTGGAGC
1 AGTTGCAGTAGAGC
15228156 AGTTGCAGTAGAGC
1 AGTTGCAGTAGAGC
15228170 AG
1 AG
15228172 ACTGAAGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.40, T:0.20
Consensus pattern (14 bp):
AGTTGCAGTAGAGC
Found at i:15229819 original size:20 final size:19
Alignment explanation
Indices: 15229779--15229820 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
15229769 GGTTAGATCA
*
15229779 TTGTTTTAAAATTCATCTT
1 TTGTTTTAAAATTCATATT
15229798 TTGTTTATAAAA-TCATTATT
1 TTGTTT-TAAAATTCA-TATT
15229818 TTG
1 TTG
15229821 AAAGTCATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (19 bp):
TTGTTTTAAAATTCATATT
Found at i:15229981 original size:19 final size:20
Alignment explanation
Indices: 15229954--15229992 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
15229944 TTAAATAATT
* *
15229954 ATTTTTAAATTTAT-ATATG
1 ATTTATAAATCTATGATATG
15229973 ATTTATAAATCTATGATATG
1 ATTTATAAATCTATGATATG
15229993 TATGGTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTTATAAATCTATGATATG
Found at i:15230037 original size:15 final size:14
Alignment explanation
Indices: 15230013--15230042 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
15230003 CTCCCTAGAT
15230013 TATATTTCATTATA
1 TATATTTCATTATA
15230027 TATATTTTCATTATA
1 TATA-TTTCATTATA
15230042 T
1 T
15230043 TTTCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (14 bp):
TATATTTCATTATA
Found at i:15230728 original size:128 final size:129
Alignment explanation
Indices: 15230563--15230810 Score: 381
Period size: 128 Copynumber: 1.9 Consensus size: 129
15230553 GAAGATTCGT
** ** * *
15230563 TAAAACAAAGGCAATATTCGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTGTTGGGTTTCG
1 TAAAACAAAGGCAATAACCGATGTTTCAAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTCA
* * *
15230628 ATTTCCCGTTTGTTCAAAATAATCAAATATTCCTTTAGAATTTTACTCGTGTTTTTCCAAACGC
66 ATTTCCCATTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCGTGTTTTTCCAAACGC
15230692 TAAAAC-AAGGCAATAACCGATGTTTCAAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTCA
1 TAAAACAAAGGCAATAACCGATGTTTCAAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTCA
* * *
15230756 ATTTTCCATTTGTTCAAAATAATCGAATATCCCTTTGGAATTTCACTCGTGTTTT
66 ATTTCCCATTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCGTGTTTT
15230811 CTAAAGCAAG
Statistics
Matches: 107, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
128 101 0.94
129 6 0.06
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (129 bp):
TAAAACAAAGGCAATAACCGATGTTTCAAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTCA
ATTTCCCATTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCGTGTTTTTCCAAACGC
Found at i:15231405 original size:18 final size:19
Alignment explanation
Indices: 15231351--15231407 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 19
15231341 TTCGACACAT
*
15231351 ATATTTAAT-ATTAAATAG
1 ATATTTATTAATTAAATAG
* *
15231369 ATATTTATTATTTTATAAAAG
1 ATATTTATTA-ATTA-AATAG
15231390 ATATTTATTAATTAAATA
1 ATATTTATTAATTAAATA
15231408 ATTATATTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 8 0.26
19 3 0.10
20 6 0.19
21 14 0.45
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (19 bp):
ATATTTATTAATTAAATAG
Found at i:15233147 original size:46 final size:46
Alignment explanation
Indices: 15233094--15233458 Score: 448
Period size: 46 Copynumber: 8.0 Consensus size: 46
15233084 GCTCTCTGAA
* *
15233094 ATGAAATGAGTAAGACCATAGG-TGAAAGATACCATGGCAACCTAAT
1 ATGAAATGAGTAAGACCAT-GGTTGAAAGATACCATGGCAACATGAT
* *
15233140 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
15233186 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
15233232 ATAAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
15233278 ATGAAAAGAATAAGACCATGGTTGAAAGATACTATGGCAACATGA-
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * ** *
15233323 CGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
15233369 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAACCTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
15233415 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
15233459 TCGAAGATAA
Statistics
Matches: 281, Mismatches: 35, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
45 40 0.14
46 241 0.86
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:15233491 original size:137 final size:138
Alignment explanation
Indices: 15233094--15233476 Score: 472
Period size: 137 Copynumber: 2.8 Consensus size: 138
15233084 GCTCTCTGAA
* * *
15233094 ATGAAATGAGTAAGACCATAGG-TGAAAGATACCATGGCAACCTAATATG-AAATGTGTAAGACC
1 ATGAAATGAGTAAGACCAT-GGTTGAAAGATACCATGGCAACCTGACATGAAAATGAGTAAGACC
* * * **
15233157 ATGGTTGAAAGATACCATGGCAACCTGATATGAA-ATGTGTAAGACCATGGTTGAAAGATACCAT
65 ATGGTTGAAAGATACTATGGCAACATG-T-CGAAGATGAATAAGACCATGGTTGAAAGATACCAT
*
15233221 GGCAACATGAT
128 GGCAACATAAT
* * * * *
15233232 ATAAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACATGACATGAAAA-GAATAAGACCA
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAATGAGTAAGACCA
* *
15233296 TGGTTGAAAGATACTATGGCAACATGACG-GGAATGAATAAGACCATGGTTGAAAGATACCATGG
66 TGGTTGAAAGATACTATGGCAACATGTCGAAG-ATGAATAAGACCATGGTTGAAAGATACCATGG
**
15233360 CAATGTAAT
130 CAACATAAT
* *
15233369 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAACCTGACA-GAAAATGAGTAAGACCA
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAATGAGTAAGACCA
* * * *
15233433 TAGTTGAAAGACACTATGGCATCATGTCGAAGATAAATAAGACC
66 TGGTTGAAAGATACTATGGCAACATGTCGAAGATGAATAAGACC
15233477 CTGAATGGGA
Statistics
Matches: 208, Mismatches: 31, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
136 6 0.03
137 125 0.60
138 74 0.36
139 3 0.01
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (138 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAATGAGTAAGACCA
TGGTTGAAAGATACTATGGCAACATGTCGAAGATGAATAAGACCATGGTTGAAAGATACCATGGC
AACATAAT
Found at i:15235793 original size:17 final size:17
Alignment explanation
Indices: 15235756--15235794 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
15235746 TTATTTATTC
*
15235756 TATTGTTGGAATTGAAT
1 TATTGTTGGAATTGAAA
15235773 TATTGTTGGAATT-ATAA
1 TATTGTTGGAATTGA-AA
15235790 TATTG
1 TATTG
15235795 AATTGAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAATTGAAA
Found at i:15247604 original size:35 final size:35
Alignment explanation
Indices: 15247577--15247742 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
15247567 CATGGCAAAG
*
15247577 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
15247612 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
15247647 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
15247687 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
15247722 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
15247743 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:15247696 original size:75 final size:75
Alignment explanation
Indices: 15247577--15247747 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
15247567 CATGGCAAAG
** *
15247577 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
15247636 CCATACTGAGC
65 CCATACCGAGC
15247647 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
15247712 CATACCGAGT
66 CATACCGAGC
**
15247722 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
15247748 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:15255076 original size:35 final size:35
Alignment explanation
Indices: 15255049--15255214 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
15255039 CATGGCAAAG
*
15255049 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
15255084 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
15255119 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
15255159 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
15255194 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
15255215 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:15255168 original size:75 final size:75
Alignment explanation
Indices: 15255049--15255219 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
15255039 CATGGCAAAG
** *
15255049 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
15255108 CCATACTGAGC
65 CCATACCGAGC
15255119 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
15255184 CATACCGAGT
66 CATACCGAGC
**
15255194 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
15255220 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:15256916 original size:46 final size:46
Alignment explanation
Indices: 15256691--15256915 Score: 294
Period size: 46 Copynumber: 4.9 Consensus size: 46
15256681 TTTGACATAA
* * * * *
15256691 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * * *
15256737 TGCCATGGTATC-TTCAACCATGGTCTTATTCTTTTCATGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
15256782 TGCCATGGTAT-TTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
15256827 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
15256873 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
15256916 GAGAGCACAC
Statistics
Matches: 162, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
44 4 0.02
45 75 0.46
46 83 0.51
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:15258138 original size:35 final size:35
Alignment explanation
Indices: 15258111--15258276 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
15258101 CATGGCAAAG
*
15258111 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
15258146 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
15258181 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
15258221 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
15258256 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
15258277 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:15258230 original size:75 final size:75
Alignment explanation
Indices: 15258111--15258281 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
15258101 CATGGCAAAG
** *
15258111 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
15258170 CCATACTGAGC
65 CCATACCGAGC
15258181 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
15258246 CATACCGAGT
66 CATACCGAGC
**
15258256 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
15258282 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:15265609 original size:35 final size:35
Alignment explanation
Indices: 15265582--15265747 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
15265572 CATGGCAAAG
*
15265582 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
15265617 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
15265652 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
15265692 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
15265727 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
15265748 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:15265701 original size:75 final size:75
Alignment explanation
Indices: 15265582--15265752 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
15265572 CATGGCAAAG
** *
15265582 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
15265641 CCATACTGAGC
65 CCATACCGAGC
15265652 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
15265717 CATACCGAGT
66 CATACCGAGC
**
15265727 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
15265753 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:15267454 original size:46 final size:46
Alignment explanation
Indices: 15267227--15267453 Score: 303
Period size: 46 Copynumber: 4.9 Consensus size: 46
15267217 TTTGACATAA
* * * * *
15267227 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * * *
15267273 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
15267319 TGCCATGGTATTTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
15267365 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
15267411 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
15267454 GAGAGCACAC
Statistics
Matches: 164, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 160 0.98
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:15269524 original size:11 final size:11
Alignment explanation
Indices: 15269508--15269555 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
15269498 CTTTATATAC
15269508 TAATAAAATAA
1 TAATAAAATAA
15269519 TAATAAAATATA
1 TAATAAAATA-A
* *
15269531 TTATTAAAATAT
1 -TAATAAAATAA
15269543 TAATAAAATAA
1 TAATAAAATAA
15269554 TA
1 TA
15269556 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 21 0.68
12 1 0.03
13 9 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:15269538 original size:24 final size:24
Alignment explanation
Indices: 15269502--15269557 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
15269492 TTCTTTCTTT
*
15269502 ATATACTAATAAAATAATAATAAA
1 ATATATTAATAAAATAATAATAAA
* *
15269526 ATATATTATTAAAATATTAATAAA
1 ATATATTAATAAAATAATAATAAA
15269550 ATAATATT
1 AT-ATATT
15269558 TATCTAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
ATATATTAATAAAATAATAATAAA
Found at i:15280297 original size:40 final size:41
Alignment explanation
Indices: 15280242--15280322 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 41
15280232 CCAAAATTAC
15280242 ATAGCATATTGACATGTGATTTTGCAATTTCTAAA-TGTAG
1 ATAGCATATTGACATGTGATTTTGCAATTTCTAAATTGTAG
*
15280282 ATAGCATATTGACATGTTATTTTGCAATTTCTAAATTGTAG
1 ATAGCATATTGACATGTGATTTTGCAATTTCTAAATTGTAG
15280323 GATCATTCGT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 34 0.87
41 5 0.13
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (41 bp):
ATAGCATATTGACATGTGATTTTGCAATTTCTAAATTGTAG
Found at i:15288872 original size:6 final size:6
Alignment explanation
Indices: 15288861--15288887 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15288851 CGGCCACGAG
15288861 TCAGGC TCAGGC TCAGGC TCAGGC TCA
1 TCAGGC TCAGGC TCAGGC TCAGGC TCA
15288888 AGCCGGCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (6 bp):
TCAGGC
Found at i:15297332 original size:5 final size:5
Alignment explanation
Indices: 15297322--15297355 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
15297312 TTGACAAAAC
15297322 CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCT
1 CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCT
15297356 GCTTTTCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
CTCTT
Found at i:15297363 original size:15 final size:15
Alignment explanation
Indices: 15297322--15297363 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
15297312 TTGACAAAAC
*
15297322 CTCTTCTCTTCTCTT
1 CTCTGCTCTTCTCTT
*
15297337 CTCTTCTCTTCTCTT
1 CTCTGCTCTTCTCTT
*
15297352 CTCTGCTTTTCT
1 CTCTGCTCTTCT
15297364 TACTTTTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.00, C:0.38, G:0.02, T:0.60
Consensus pattern (15 bp):
CTCTGCTCTTCTCTT
Found at i:15307326 original size:15 final size:16
Alignment explanation
Indices: 15307302--15307342 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
15307292 CTTCCTCAGT
15307302 AATCACATTCCCAGC-
1 AATCACATTCCCAGCG
*
15307317 AATCATATT-CCAGCG
1 AATCACATTCCCAGCG
15307332 AATCACATTCC
1 AATCACATTCC
15307343 ATTGGAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 5 0.23
15 16 0.73
16 1 0.05
ACGTcount: A:0.34, C:0.34, G:0.07, T:0.24
Consensus pattern (16 bp):
AATCACATTCCCAGCG
Found at i:15308741 original size:5 final size:5
Alignment explanation
Indices: 15308731--15308758 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
15308721 AATAATTAAG
15308731 TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TAT
15308759 TATATATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:15310436 original size:39 final size:39
Alignment explanation
Indices: 15310329--15310463 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
15310319 GACCTCGAGT
* * *
15310329 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
15310370 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
15310408 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
15310447 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
15310464 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:15314990 original size:13 final size:14
Alignment explanation
Indices: 15314974--15315009 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
15314964 CAATCTCATA
15314974 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
15314987 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
15315000 TCTC-ATTTCA
1 TCTCAATTTCA
15315010 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:15314999 original size:18 final size:19
Alignment explanation
Indices: 15314961--15315001 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
15314951 TGGTTCATGT
15314961 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
15314980 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
15314998 TTTC
1 TTTC
15315002 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Done.