Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 44 of 335
Found at i:15935309 original size:35 final size:35
Alignment explanation
Indices: 15935265--15935431 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
15935255 TCCTCATTGA
** *
15935265 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
15935300 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
15935340 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
15935375 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
15935410 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
15935432 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:15935348 original size:75 final size:73
Alignment explanation
Indices: 15935260--15935431 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
15935250 GGTTTTCCTC
** * * **
15935260 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
15935324 TCAGTATGG
65 TCAGTATGG
*
15935333 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
15935398 CTCAGTATGG
64 CTCAGTATGG
15935408 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
15935432 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:15941021 original size:31 final size:30
Alignment explanation
Indices: 15940968--15941035 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
15940958 GTATGAACTA
15940968 AATTATGAATTAAGTTAGTATG-AGAAAAAT
1 AATTATGAATTAAGTTA-TATGAAGAAAAAT
*
15940998 GAATTATGAATTTAAGATT-TATGAAGTAAAAT
1 -AATTATGAA-TTAAG-TTATATGAAGAAAAAT
15941030 AATTAT
1 AATTAT
15941036 ATATAAAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 19 0.58
32 12 0.36
33 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.37
Consensus pattern (30 bp):
AATTATGAATTAAGTTATATGAAGAAAAAT
Found at i:15950325 original size:24 final size:26
Alignment explanation
Indices: 15950298--15950356 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
15950288 TCAATATTAA
15950298 AATTTTAAA-TT-TTAAAAAAAAATT
1 AATTTTAAATTTATTAAAAAAAAATT
*
15950322 AATTATGTAAATTTATTGAAAAAAAATT
1 AATT-T-TAAATTTATTAAAAAAAAATT
15950350 ATATTTT
1 A-ATTTT
15950357 CATAGTATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 4 0.14
25 1 0.03
26 4 0.14
27 3 0.10
28 14 0.48
29 3 0.10
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (26 bp):
AATTTTAAATTTATTAAAAAAAAATT
Found at i:15953389 original size:46 final size:46
Alignment explanation
Indices: 15953325--15953474 Score: 167
Period size: 46 Copynumber: 3.1 Consensus size: 46
15953315 ACACACCGTA
*
15953325 GCCATAGCCCAGCCATGGTCTTACACGAATCACATATCACATTGAT
1 GCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACATTGAT
* * * * *
15953371 GCCATATCCCAGATATGGTCTTATACGGAAGCACGTAATCACATATCTCTGAT
1 GCCATAGCCCAGCTATGGTCTTACAC-GAATCACAT-ATCAC--A--T-TGAT
15953424 GCCATAGCCCAGCTATGGTCTTACAC-AGATCACATATCACATTGAT
1 GCCATAGCCCAGCTATGGTCTTACACGA-ATCACATATCACATTGAT
15953470 GCCAT
1 GCCAT
15953475 GGTCCAACCA
Statistics
Matches: 85, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
46 31 0.36
47 8 0.09
48 5 0.06
49 1 0.01
50 1 0.01
51 6 0.07
52 6 0.07
53 27 0.32
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (46 bp):
GCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACATTGAT
Found at i:15954583 original size:21 final size:21
Alignment explanation
Indices: 15954557--15954628 Score: 101
Period size: 21 Copynumber: 3.4 Consensus size: 21
15954547 TGATCAGTAT
15954557 ACGACACACGAGGTGCCTGAA
1 ACGACACACGAGGTGCCTGAA
*
15954578 ACGACACACGAGGTGCCTGAT
1 ACGACACACGAGGTGCCTGAA
*
15954599 ACGACA-ACAAGGTGCCTGAAA
1 ACGACACACGAGGTGCCTG-AA
15954620 TACGACACA
1 -ACGACACA
15954629 TAAAGTGCCT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
20 11 0.24
21 27 0.60
22 6 0.13
23 1 0.02
ACGTcount: A:0.36, C:0.28, G:0.25, T:0.11
Consensus pattern (21 bp):
ACGACACACGAGGTGCCTGAA
Found at i:15954637 original size:43 final size:42
Alignment explanation
Indices: 15954555--15954641 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 42
15954545 CCTGATCAGT
* * *
15954555 ATACGACACACGAGGTGCCTGAAACGACACACGAGGTGCCTG
1 ATACGACACACAAGGTGCCTGAAACGACACACAAAGTGCCTG
*
15954597 ATACGACA-ACAAGGTGCCTGAAATACGACACATAAAGTGCCTG
1 ATACGACACACAAGGTGCCTG-AA-ACGACACACAAAGTGCCTG
15954640 AT
1 AT
15954642 CAGTATAGCC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
41 11 0.28
42 10 0.26
43 18 0.46
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (42 bp):
ATACGACACACAAGGTGCCTGAAACGACACACAAAGTGCCTG
Found at i:15954864 original size:25 final size:23
Alignment explanation
Indices: 15954831--15954893 Score: 126
Period size: 23 Copynumber: 2.7 Consensus size: 23
15954821 AAATGTCCAA
15954831 CCAAAACACACCAGTATAATCCT
1 CCAAAACACACCAGTATAATCCT
15954854 CCAAAACACACCAGTATAATCCT
1 CCAAAACACACCAGTATAATCCT
15954877 CCAAAACACACCAGTAT
1 CCAAAACACACCAGTAT
15954894 CATATAATCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.44, C:0.35, G:0.05, T:0.16
Consensus pattern (23 bp):
CCAAAACACACCAGTATAATCCT
Found at i:15954900 original size:28 final size:28
Alignment explanation
Indices: 15954845--15954979 Score: 183
Period size: 28 Copynumber: 5.0 Consensus size: 28
15954835 AACACACCAG
15954845 TATAATCCTCCAAAACACACCAG-----
1 TATAATCCTCCAAAACACACCAGAATAA
* *
15954868 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
15954896 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
15954924 TATAATCCATCC-AAACACACCAGAATAA
1 TATAATCC-TCCAAAACACACCAGAATAA
15954952 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
15954980 GCACAAAGTG
Statistics
Matches: 102, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
23 23 0.23
28 61 0.60
29 18 0.18
ACGTcount: A:0.47, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:15954923 original size:23 final size:23
Alignment explanation
Indices: 15954831--15954924 Score: 116
Period size: 23 Copynumber: 3.9 Consensus size: 23
15954821 AAATGTCCAA
*
15954831 CCAAAACACACCAGTATAATCCT
1 CCAAAACACACCAGAATAATCCT
*
15954854 CCAAAACACACCAGTATAATCCT
1 CCAAAACACACCAGAATAATCCT
15954877 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----A-ATAATCCT
*
15954905 CCCAAACACACCAGAATAAT
1 CCAAAACACACCAGAATAAT
15954925 ATAATCCATC
Statistics
Matches: 64, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
23 42 0.66
24 1 0.02
28 21 0.33
ACGTcount: A:0.45, C:0.34, G:0.04, T:0.17
Consensus pattern (23 bp):
CCAAAACACACCAGAATAATCCT
Found at i:15954951 original size:23 final size:24
Alignment explanation
Indices: 15954804--15954979 Score: 121
Period size: 28 Copynumber: 7.0 Consensus size: 24
15954794 ATACACGGAT
* *
15954804 TCCATCC-AAACACACCAAAAT-G
1 TCCATCCAAAACACACCAGAATAA
* *
15954826 TCCAACCAAAACACACCAGTATAA
1 TCCATCCAAAACACACCAGAATAA
*
15954850 TCC-TCCAAAACACACCAGTATAA
1 TCCATCCAAAACACACCAGAATAA
15954873 TCC-TCCAAAACACACCAGTATCATATAA
1 TCCATCCAAAACACACCAG----A-ATAA
*
15954901 TCC-TCCCAAACACACCAGAATAATATAA
1 TCCATCCAAAACACACCAG----A-ATAA
15954929 TCCATCC-AAACACACCAGAATAATATAA
1 TCCATCCAAAACACACCAG----A-ATAA
15954957 TCCATCCAAAACACACCAGAATA
1 TCCATCCAAAACACACCAGAATA
15954980 GCACAAAGTG
Statistics
Matches: 136, Mismatches: 9, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
22 6 0.04
23 49 0.36
24 6 0.04
25 1 0.01
28 60 0.44
29 14 0.10
ACGTcount: A:0.47, C:0.33, G:0.04, T:0.16
Consensus pattern (24 bp):
TCCATCCAAAACACACCAGAATAA
Found at i:15958335 original size:21 final size:21
Alignment explanation
Indices: 15958297--15958346 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
15958287 AACGGTGGCG
* * *
15958297 GTGAGATTAGTTAATGTAGTT
1 GTGAGATTAGATAATGTAATA
* *
15958318 GTGAGATTGGATATTGTAATA
1 GTGAGATTAGATAATGTAATA
15958339 GTGAGATT
1 GTGAGATT
15958347 CAAAACAACG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.40
Consensus pattern (21 bp):
GTGAGATTAGATAATGTAATA
Found at i:15958598 original size:23 final size:21
Alignment explanation
Indices: 15958557--15958598 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
15958547 TTATTATATA
*
15958557 AAATAAAAAATTAACATTTTT
1 AAATAAAAAATTAAAATTTTT
15958578 AAATCAAAATAATTAAAATTT
1 AAAT-AAAA-AATTAAAATTT
15958599 AAAATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 4 0.22
23 10 0.56
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (21 bp):
AAATAAAAAATTAAAATTTTT
Found at i:15966126 original size:14 final size:14
Alignment explanation
Indices: 15966109--15966137 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15966099 ATATCAAACA
15966109 TAAAATATATTTAT
1 TAAAATATATTTAT
15966123 TAAAATATATTTAT
1 TAAAATATATTTAT
15966137 T
1 T
15966138 TATGCGCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TAAAATATATTTAT
Found at i:15980804 original size:24 final size:24
Alignment explanation
Indices: 15980776--15980824 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
15980766 ATATGTCAAT
15980776 TTAATGCATCATTTAA-TTTTTTTA
1 TTAAT-CATCATTTAAGTTTTTTTA
**
15980800 TTAATTTTCATTTAAGTTTTTTTA
1 TTAATCATCATTTAAGTTTTTTTA
15980824 T
1 T
15980825 AAAACTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (24 bp):
TTAATCATCATTTAAGTTTTTTTA
Found at i:15986629 original size:6 final size:6
Alignment explanation
Indices: 15986616--15986644 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
15986606 GAATGGATTT
15986616 GGAT-G GGATGG GGATGG GGATGG GGATGG
1 GGATGG GGATGG GGATGG GGATGG GGATGG
15986645 CGCCCAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 19 0.83
ACGTcount: A:0.17, C:0.00, G:0.66, T:0.17
Consensus pattern (6 bp):
GGATGG
Found at i:15987235 original size:26 final size:26
Alignment explanation
Indices: 15987186--15987237 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15987176 TTTTTAAATA
*
15987186 TTTAAAATTATTAAAATATTATATTT
1 TTTAAAATTATTAAAATATCATATTT
*
15987212 TTTAATATTATTAAACATA-CATATTT
1 TTTAAAATTATTAAA-ATATCATATTT
15987238 AATTATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (26 bp):
TTTAAAATTATTAAAATATCATATTT
Found at i:15987286 original size:22 final size:22
Alignment explanation
Indices: 15987261--15987303 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15987251 TAGTCATATG
15987261 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
15987283 ATAATTTATTATTTTAATAAA
1 ATAAATTATTAATATAATAAA
15987304 CTATTTAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:15987342 original size:13 final size:14
Alignment explanation
Indices: 15987324--15987365 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
15987314 TTTCAATTCT
15987324 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
15987337 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
15987352 ATTTTAAATAATAT
1 ATTTT-AATAATAT
15987366 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:15987350 original size:16 final size:16
Alignment explanation
Indices: 15987328--15987364 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
15987318 AATTCTATTT
15987328 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
15987345 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
15987360 TAATA
1 TAATA
15987365 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:15987841 original size:14 final size:14
Alignment explanation
Indices: 15987804--15987841 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
15987794 TATTTTTAAG
15987804 AAATCATTTTCCAA
1 AAATCATTTTCCAA
15987818 AAATCA-TTTCCAA
1 AAATCATTTTCCAA
*
15987831 AAGTCATTTTC
1 AAATCATTTTC
15987842 AGAGAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:15990704 original size:46 final size:44
Alignment explanation
Indices: 15990600--15990707 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
15990590 TGTCTTTGAC
** * * *
15990600 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
15990644 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
15990690 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
15990708 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:16006676 original size:5 final size:5
Alignment explanation
Indices: 16006666--16006702 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
16006656 ATGTGTGTTC
16006666 TTTAT TTTA- TTT-T TTTATT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTT
16006703 CAAAAATTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 6 0.21
5 18 0.62
6 5 0.17
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTAT
Found at i:16020984 original size:5 final size:5
Alignment explanation
Indices: 16020974--16021001 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
16020964 CTGTATGTTC
16020974 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
16021002 CACAGTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:16026466 original size:26 final size:26
Alignment explanation
Indices: 16026435--16026490 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
16026425 AATTTTTTTG
*
16026435 AAGTTAGACTTATAATTCACAATAAC
1 AAGTTAGACTTACAATTCACAATAAC
* * *
16026461 AAGTTATATTTACAGTTCACAATAAC
1 AAGTTAGACTTACAATTCACAATAAC
16026487 AAGT
1 AAGT
16026491 AATACCATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (26 bp):
AAGTTAGACTTACAATTCACAATAAC
Found at i:16035271 original size:2 final size:2
Alignment explanation
Indices: 16035264--16035296 Score: 57
Period size: 2 Copynumber: 16.0 Consensus size: 2
16035254 CAAACTAGTG
16035264 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CTA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
16035297 AGGTTGTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 28 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:16036250 original size:29 final size:29
Alignment explanation
Indices: 16036207--16036264 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
16036197 ACTAAGCCAG
*
16036207 ACAAAACAG-CCCCCCTCATGATTAATACC
1 ACAAAACAGACCCCCC-AATGATTAATACC
*
16036236 ACAAAACAGATCCCCCAATGATTAATACC
1 ACAAAACAGACCCCCCAATGATTAATACC
16036265 TATGTGAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.41, C:0.34, G:0.07, T:0.17
Consensus pattern (29 bp):
ACAAAACAGACCCCCCAATGATTAATACC
Found at i:16046197 original size:13 final size:13
Alignment explanation
Indices: 16046156--16046198 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
16046146 GTAAAAAGAC
16046156 TAAATTTATAAAAT
1 TAAA-TTATAAAAT
* *
16046170 AAAAATATATAAAT
1 TAAATTATA-AAAT
16046184 TAAATTATAAAAT
1 TAAATTATAAAAT
16046197 TA
1 TA
16046199 TGAAGAATAC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
TAAATTATAAAAT
Found at i:16047546 original size:23 final size:23
Alignment explanation
Indices: 16047516--16047559 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
16047506 TACCTTCTGA
*
16047516 TCTCACTTTATCTTGATATTCGG
1 TCTCACTTTATATTGATATTCGG
16047539 TCTCACTTTATATTGATATTC
1 TCTCACTTTATATTGATATTC
16047560 CCTTAAGGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.09, T:0.50
Consensus pattern (23 bp):
TCTCACTTTATATTGATATTCGG
Found at i:16051916 original size:23 final size:23
Alignment explanation
Indices: 16051890--16051934 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
16051880 TGAGTATGTG
*
16051890 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
16051913 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
16051935 TTGAATTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:16052247 original size:32 final size:32
Alignment explanation
Indices: 16052211--16052276 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
16052201 TGTCCCTAGG
16052211 ATAGACCCTCGAGGCCCAAAATGAATGTTAGA
1 ATAGACCCTCGAGGCCCAAAATGAATGTTAGA
16052243 ATAGACCCTCGAGGCCCAAAATGAATGTTAGA
1 ATAGACCCTCGAGGCCCAAAATGAATGTTAGA
16052275 AT
1 AT
16052277 TGGGTCGGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (32 bp):
ATAGACCCTCGAGGCCCAAAATGAATGTTAGA
Found at i:16058505 original size:25 final size:25
Alignment explanation
Indices: 16058466--16058525 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
16058456 CATCCTAATA
16058466 AATGGCTCTCTTGAGCTTCCC-ATT
1 AATGGCTCTCTTGAGCTTCCCGATT
*
16058490 ATTTGGCTCT-TATGAGCTTCCCGATT
1 A-ATGGCTCTCT-TGAGCTTCCCGATT
16058516 AATGGCTCTC
1 AATGGCTCTC
16058526 CAGAGCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 2 0.07
25 24 0.80
26 4 0.13
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.38
Consensus pattern (25 bp):
AATGGCTCTCTTGAGCTTCCCGATT
Found at i:16058531 original size:25 final size:24
Alignment explanation
Indices: 16058466--16058533 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
16058456 CATCCTAATA
*
16058466 AATGGCTCTCTTGAGCTTCCCATT
1 AATGGCTCTCTAGAGCTTCCCATT
*
16058490 ATTTGGCTCT-TATGAGCTTCCCGATT
1 A-ATGGCTCTCTA-GAGCTTCCC-ATT
*
16058516 AATGGCTCTCCAGAGCTT
1 AATGGCTCTCTAGAGCTT
16058534 TTCGATATTG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
24 2 0.06
25 29 0.81
26 5 0.14
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (24 bp):
AATGGCTCTCTAGAGCTTCCCATT
Found at i:16058608 original size:25 final size:25
Alignment explanation
Indices: 16058574--16058621 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
16058564 TACGACTCTT
*
16058574 ATGAGTTTCCCATTACATGGCTCAC
1 ATGAGCTTCCCATTACATGGCTCAC
* *
16058599 ATGAGCTTCCCGTTTCATGGCTC
1 ATGAGCTTCCCATTACATGGCTC
16058622 GAAAGAGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCATTACATGGCTCAC
Found at i:16065452 original size:68 final size:66
Alignment explanation
Indices: 16065238--16065445 Score: 221
Period size: 67 Copynumber: 3.2 Consensus size: 66
16065228 CATAATTTTG
* * * *
16065238 GCTCTCTTGTATACATGGTGAACACTTAGTACCACCCATGTGACCTAGC-CAGT--T-TATCTCG
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTCA-TCATATATCTCG
16065299 TA
65 TA
* * * * * *
16065301 GCTCTTTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCT-A-CATATATCC
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTCATCATATATCT
16065364 CGTA
63 CGTA
*
16065368 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATATCTC
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCT-CATCAT-ATATCTC
16065433 GTA
64 GTA
16065436 GCTCTCTTGT
1 GCTCTCTTGT
16065446 ACACATGATG
Statistics
Matches: 118, Mismatches: 16, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
63 18 0.15
64 25 0.21
66 26 0.22
67 30 0.25
68 19 0.16
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (66 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTCATCATATATCTCGT
A
Found at i:16069987 original size:38 final size:40
Alignment explanation
Indices: 16069933--16070053 Score: 174
Period size: 38 Copynumber: 2.9 Consensus size: 40
16069923 TCTGATATGA
16069933 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
16069973 -A-GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
16070011 ATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 ------AATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
16070054 ATGACAGAAA
Statistics
Matches: 73, Mismatches: 0, Indels: 10
0.88 0.00 0.12
Matches are distributed among these distances:
38 37 0.51
39 1 0.01
45 1 0.01
46 34 0.47
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (40 bp):
AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:16070041 original size:46 final size:46
Alignment explanation
Indices: 16069974--16070102 Score: 186
Period size: 46 Copynumber: 2.8 Consensus size: 46
16069964 GGCAACCTGA
* * *
16069974 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
16070020 GTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
* * * * *
16070066 GAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
16070103 TCAAAGATAA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
Found at i:16072552 original size:46 final size:46
Alignment explanation
Indices: 16072481--16072842 Score: 548
Period size: 46 Copynumber: 7.9 Consensus size: 46
16072471 GCTTTCTGAA
* * * *
16072481 ATGAAATGTGTAAGCCCATGGTTGAAAGACACCATGGCAATATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
*
16072527 ATGAAATGTGTAAGACCATGATTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
*
16072573 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
16072619 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
* *
16072665 ATAAAATGTGTAAGACCAGGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
16072711 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
*
16072757 AT-AAATTGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAA-TGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
** * ** * * *
16072802 CGGGAATGAATAAGGCGATGGTTGAAAGATACCATAGCAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
16072843 CTGACAGAAA
Statistics
Matches: 293, Mismatches: 21, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
45 33 0.11
46 260 0.89
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
Found at i:16073195 original size:16 final size:17
Alignment explanation
Indices: 16073174--16073206 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
16073164 ACGATGGAGC
16073174 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
16073190 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
16073207 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:16079707 original size:5 final size:5
Alignment explanation
Indices: 16079697--16079724 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
16079687 AACAATAAAA
16079697 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
16079725 TATGTGGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:16081274 original size:29 final size:29
Alignment explanation
Indices: 16081233--16081288 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
16081223 TAGTACGTCA
* * * *
16081233 ATTTATTTTTATATTAAATTAATATAATT
1 ATTTATGTATATAATAAATAAATATAATT
*
16081262 ATTTATGTATATAATATATAAATATAA
1 ATTTATGTATATAATAAATAAATATAA
16081289 AATAATATTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
ATTTATGTATATAATAAATAAATATAATT
Found at i:16081413 original size:29 final size:27
Alignment explanation
Indices: 16081350--16081413 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 27
16081340 TTAAAATACA
*
16081350 TATATAAAATTACATGGAATCAAAATT
1 TATATAAAATTACATGAAATCAAAATT
* *
16081377 TATTTATAAAATTACATATAATATCGAAATT
1 TA--TATAAAATTACAT-GAA-ATCAAAATT
16081408 TATATA
1 TATATA
16081414 TTCTTTCGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.07
29 17 0.57
30 1 0.03
31 10 0.33
ACGTcount: A:0.50, C:0.06, G:0.05, T:0.39
Consensus pattern (27 bp):
TATATAAAATTACATGAAATCAAAATT
Found at i:16085475 original size:33 final size:34
Alignment explanation
Indices: 16085437--16085501 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
16085427 ATCAGTCCTT
* *
16085437 AATA-TTATTTTTTAATTTAGTCTTTGAACTTGA
1 AATATTTATTTTTCAATTTAGTCTATGAACTTGA
*
16085470 AATATTTATTTTTCAATTTGGTCTATGAACTT
1 AATATTTATTTTTCAATTTAGTCTATGAACTT
16085502 ATATTTCGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.29, C:0.08, G:0.09, T:0.54
Consensus pattern (34 bp):
AATATTTATTTTTCAATTTAGTCTATGAACTTGA
Found at i:16092738 original size:42 final size:42
Alignment explanation
Indices: 16092686--16093024 Score: 339
Period size: 49 Copynumber: 7.6 Consensus size: 42
16092676 TATAATTCAA
*
16092686 CTATAGTCTTACACATATTCACATAAT-GATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACAT-ATCGATGCCATAGCCCAG
*
16092728 CTATGGTCTTACACATATTCATATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
*
16092770 C--TGGTCTTACACATATTCATATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
16092810 CTATGGTTTTACATGTAATCACATA-TCACATATCGATGCCATAGCCCAG
1 CTATGG---T-C-T-T-A-CACATATTCACATATCGATGCCATAGCCCAG
* * *
16092859 CTATGGTCTTACACATATTCATATATTGATGCCATAGCCTAG
1 CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
* *
16092901 CTATGGTCTTACACGTAATCACATATCACGTATCAATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT---AT-TCACATATCGATGCCATAGCCCAG
*
16092950 CTATGCTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT---AT-TCACATATCGATGCCATAGCCCAG
16092999 CTATGGTCTTACACGA-A-TCACATATC
1 CTATGGTCTTACAC-ATATTCACATATC
16093025 TCACTGATGC
Statistics
Matches: 262, Mismatches: 16, Indels: 39
0.83 0.05 0.12
Matches are distributed among these distances:
40 40 0.15
41 17 0.06
42 77 0.29
43 2 0.01
44 1 0.00
45 4 0.02
46 2 0.01
47 2 0.01
48 3 0.01
49 108 0.41
50 6 0.02
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
Found at i:16092852 original size:49 final size:49
Alignment explanation
Indices: 16092779--16093102 Score: 359
Period size: 49 Copynumber: 6.8 Consensus size: 49
16092769 GCTGGTCTTA
* * *
16092779 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTTTTACATGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
16092829 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC---AT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
* * *
16092875 ---AT-TCATATATTGATGCCATAGCCTAGCTATGGTCTTACACGTAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
* * *
16092920 CACATATCACGTATCAATGCCATAGCCCAGCTATGCTCTTACACGTAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
16092969 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
* * * * * * *
16093017 CACATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTATATAGT-AG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACA-CGTAAT
* * * *
16093064 CATATATCAC--ACCGATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
16093103 TACGGAAATC
Statistics
Matches: 238, Mismatches: 26, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
42 35 0.15
43 2 0.01
45 2 0.01
46 27 0.11
47 37 0.16
48 15 0.06
49 114 0.48
50 6 0.03
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
Found at i:16092903 original size:91 final size:91
Alignment explanation
Indices: 16092739--16093055 Score: 410
Period size: 91 Copynumber: 3.5 Consensus size: 91
16092729 TATGGTCTTA
*
16092739 CACATATTCATATATCGATGCCATAGCCCAGC--TGGTCTTACACATATTCATATATCGATGCCA
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATCGATGCCA
* *
16092802 TAGCCCAGCTATGGTTTTACATGTAAT
65 TAGCCCAGCTATGGTCTTACACGTAAT
*
16092829 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATTGATGCCAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATCGATGCCAT
*
16092894 AGCCTAGCTATGGTCTTACACGTAAT
66 AGCCCAGCTATGGTCTTACACGTAAT
* * * *
16092920 CACATATCACGTATCAATGCCATAGCCCAGCTATGCTCTTACACGTAATCACATATCACATATCG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCATATATCG
16092985 ATGCCATAGCCCAGCTATGGTCTTACACG-AAT
59 ATGCCATAGCCCAGCTATGGTCTTACACGTAAT
* * * *
16093017 CACATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
16093056 TATAGTAGCA
Statistics
Matches: 200, Mismatches: 18, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
89 24 0.12
90 6 0.03
91 95 0.47
94 2 0.01
95 22 0.11
96 1 0.00
97 14 0.07
98 36 0.18
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (91 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATCGATGCCAT
AGCCCAGCTATGGTCTTACACGTAAT
Found at i:16093098 original size:93 final size:96
Alignment explanation
Indices: 16092886--16093102 Score: 246
Period size: 95 Copynumber: 2.3 Consensus size: 96
16092876 TTCATATATT
* *
16092886 GATGCCATAGCCTAGCTATGGTCTTACACGTAATCACATATCACGTATCAATGCCATAGCCCAGC
1 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACG-ATCAATGCCATAGCCCAGA
* * *
16092951 TATGCTCTTACACGTAATCACATATCACATATC
65 TATGCTCTTACAAGTAAGCACATATCACA-ACC
* * *
16092984 GATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATATCTC-A-CTGATGCCATATCCCAGA
1 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACGATC-AATGCCATAGCCCAGA
* * *
16093046 TATGGTCTTATATAGT-AGCATATATCAC-ACC
65 TATGCTCTTACA-AGTAAGCACATATCACAACC
* *
16093077 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGCTATGGTCTTA
16093103 TACGGAAATC
Statistics
Matches: 104, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
93 26 0.25
94 1 0.01
95 34 0.33
96 2 0.02
97 12 0.12
98 29 0.28
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (96 bp):
GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACGATCAATGCCATAGCCCAGAT
ATGCTCTTACAAGTAAGCACATATCACAACC
Found at i:16093167 original size:31 final size:31
Alignment explanation
Indices: 16093124--16093210 Score: 131
Period size: 31 Copynumber: 2.8 Consensus size: 31
16093114 CTTGTCACTT
* *
16093124 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
*
16093155 GTAGTC-GGAGCTACCACTTTTCACTGATCAG
1 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
16093186 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCAGAAGCTACCACTTTTCACT
16093211 TGTCATTTGT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 1 0.02
31 49 0.96
32 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:16093288 original size:50 final size:51
Alignment explanation
Indices: 16093186--16093314 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
16093176 CACTGATCAG
* * * *
16093186 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
*
16093237 GTAGCCGAAGCTATCACTTATCACTT-TTATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
*
16093287 GTAGCCGAAGCTATCATTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
16093315 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
Found at i:16097469 original size:16 final size:18
Alignment explanation
Indices: 16097438--16097472 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
16097428 CAATTAACCC
16097438 CTCAATTAAGATAATTTT
1 CTCAATTAAGATAATTTT
16097456 CTCAATT-A-ATAATTTT
1 CTCAATTAAGATAATTTT
16097472 C
1 C
16097473 CTAGACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 1 0.06
18 7 0.41
ACGTcount: A:0.37, C:0.14, G:0.03, T:0.46
Consensus pattern (18 bp):
CTCAATTAAGATAATTTT
Found at i:16106816 original size:15 final size:15
Alignment explanation
Indices: 16106781--16106821 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
16106771 TATCTCTACT
*
16106781 ATATTAATAT-TAAA
1 ATATTAATATAAAAA
16106795 ATATTAATCATAAAAA
1 ATATTAAT-ATAAAAA
16106811 AT-TTAATATAA
1 ATATTAATATAA
16106822 TAAGATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 12 0.50
15 7 0.29
16 5 0.21
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (15 bp):
ATATTAATATAAAAA
Found at i:16122028 original size:53 final size:53
Alignment explanation
Indices: 16121947--16122097 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
16121937 CTTACACGGT
* *
16121947 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
16122002 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
16122055 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
16122098 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:16129540 original size:53 final size:53
Alignment explanation
Indices: 16129459--16129609 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
16129449 CTTACACGGT
* *
16129459 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
16129514 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
16129567 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
16129610 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:16140333 original size:12 final size:12
Alignment explanation
Indices: 16140316--16140340 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16140306 CCAGGTAATG
16140316 AACGTTGGAGAA
1 AACGTTGGAGAA
16140328 AACGTTGGAGAA
1 AACGTTGGAGAA
16140340 A
1 A
16140341 GTAACTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.32, T:0.16
Consensus pattern (12 bp):
AACGTTGGAGAA
Found at i:16140998 original size:1 final size:1
Alignment explanation
Indices: 16140992--16141025 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
16140982 ACAAAATGTT
*
16140992 AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16141026 CTTGAAGACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:16148089 original size:18 final size:20
Alignment explanation
Indices: 16148063--16148099 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
16148053 TCATCTATAT
16148063 TAATATTAT-T-TTTTTTAA
1 TAATATTATATGTTTTTTAA
*
16148081 TAATTTTATATGTTTTTTA
1 TAATATTATATGTTTTTTA
16148100 TTTATTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.50
19 1 0.06
20 7 0.44
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TAATATTATATGTTTTTTAA
Found at i:16149127 original size:20 final size:20
Alignment explanation
Indices: 16149090--16149127 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
16149080 TAATGGGGAG
*
16149090 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
16149110 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
16149128 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:16151076 original size:46 final size:46
Alignment explanation
Indices: 16151024--16151251 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
16151014 AGTGTGCTCT
* *
16151024 CTGATATGAAATGTGTAAGACCGTGGTTGAAGGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
16151070 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
16151116 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
16151162 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
16151208 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
16151252 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 165 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:16153236 original size:26 final size:26
Alignment explanation
Indices: 16153207--16153259 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16153197 TTTACAGTTT
16153207 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
16153233 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
16153259 T
1 T
16153260 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:16157396 original size:26 final size:26
Alignment explanation
Indices: 16157360--16157469 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
16157350 TGATACAAAT
16157360 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
16157386 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
16157412 TGATAATGGGTTAGGTAAATGTTTCG
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
16157438 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
16157464 TGATAA
1 TGATAA
16157470 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:16161040 original size:18 final size:17
Alignment explanation
Indices: 16161005--16161037 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16160995 CTTTTTATTC
16161005 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
16161022 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
16161038 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:16168777 original size:18 final size:17
Alignment explanation
Indices: 16168742--16168774 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16168732 CTTTTCATTC
16168742 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
16168759 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
16168775 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:16169139 original size:131 final size:131
Alignment explanation
Indices: 16168908--16169144 Score: 320
Period size: 131 Copynumber: 1.8 Consensus size: 131
16168898 TTTAACAAAT
* *
16168908 AAAAATCTTATAATATTAATATTTAATTAATAAATATCTTTAACTTAAAATTTAAGTAAATACAT
1 AAAAATCTTATAATATTAATATTTAATTAACAAATATCTTTAACTTAAAATTTAAGTAAATAAAT
* * *
16168973 AATTATAATACAAATGTATATATTCATATTATTACAAATGTCATTATTTAATTTATTTTTCATAC
66 AATTATAATACAAATGTACACATACATATTATTACAAATGTCATTATTTAATTTATTTTTCATAC
16169038 C
131 C
*
16169039 AAAAATCTTATAAT-TTAATTATTTAATTAACAAATATCTTTATACTT-AAATTATAAGTAATTA
1 AAAAATCTTATAATATTAA-TATTTAATTAACAAATATCTTTA-ACTTAAAATT-TAAGTAAATA
* * * *
16169102 AATATTTA-AATTACAAATGTACCCATACA-ATTCTTACACATGT
63 AATAATTATAA-TACAAATGTACACATACATATTATTACAAATGT
16169145 ATATTTTATT
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
130 4 0.04
131 55 0.60
132 33 0.36
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.43
Consensus pattern (131 bp):
AAAAATCTTATAATATTAATATTTAATTAACAAATATCTTTAACTTAAAATTTAAGTAAATAAAT
AATTATAATACAAATGTACACATACATATTATTACAAATGTCATTATTTAATTTATTTTTCATAC
C
Found at i:16170364 original size:23 final size:23
Alignment explanation
Indices: 16170324--16170390 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
16170314 ATTTAAGCAA
* *
16170324 ATAATAATTATTACTAAAATATAAT
1 ATAATAA-TA-TAATAAAATATAAC
*
16170349 ATAATAATATAATAAAACATAAC
1 ATAATAATATAATAAAATATAAC
* *
16170372 ATAAAAATAAAATAAAATA
1 ATAATAATATAATAAAATA
16170391 AAGAAATAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
23 27 0.75
24 2 0.06
25 7 0.19
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (23 bp):
ATAATAATATAATAAAATATAAC
Found at i:16171175 original size:18 final size:17
Alignment explanation
Indices: 16171134--16171176 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
16171124 TTGAAATGGT
*
16171134 TTGAAATTGTATATTGA
1 TTGAAATTGAATATTGA
*
16171151 TTGGAAATTGAATTATTTA
1 TT-GAAATTGAA-TATTGA
16171170 TTGAAAT
1 TTGAAAT
16171177 ACCCTCTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 13 0.59
19 7 0.32
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (17 bp):
TTGAAATTGAATATTGA
Found at i:16171615 original size:13 final size:14
Alignment explanation
Indices: 16171594--16171622 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
16171584 TGAAAAATGG
16171594 ATTAGAAAATATTT
1 ATTAGAAAATATTT
16171608 ATTA-AAAATATTT
1 ATTAGAAAATATTT
16171621 AT
1 AT
16171623 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:16172184 original size:31 final size:32
Alignment explanation
Indices: 16172135--16172198 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 32
16172125 ATATTAACTA
*
16172135 AGATATTTATTAATTAAATA-ATTATATTATG
1 AGATATTTATTAATTAAATATATTAAATTATG
*
16172166 AGATTTTTATGTAA-TAAATATATTAAATTATG
1 AGATATTTAT-TAATTAAATATATTAAATTATG
16172198 A
1 A
16172199 CAAATGTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (32 bp):
AGATATTTATTAATTAAATATATTAAATTATG
Found at i:16172700 original size:15 final size:15
Alignment explanation
Indices: 16172677--16172720 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
16172667 TATCAAATTT
16172677 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
16172692 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
16172707 ATATTGATTGAAAT
1 ATATTGATTGAAAT
16172721 ATAATATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:16173128 original size:21 final size:23
Alignment explanation
Indices: 16173086--16173128 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
16173076 TAATATTCCG
*
16173086 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTAGGATATTCT
16173109 GGTGTGTTTGGG-AGGA-ATTC
1 GGTGTGTTTGGGTAGGATATTC
16173129 GCGTATCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 3 0.16
23 12 0.63
ACGTcount: A:0.12, C:0.05, G:0.42, T:0.42
Consensus pattern (23 bp):
GGTGTGTTTGGGTAGGATATTCT
Found at i:16173264 original size:19 final size:18
Alignment explanation
Indices: 16173226--16173265 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
16173216 ATGAAATGAT
16173226 AAATTGAATTGAGAATTG
1 AAATTGAATTGAGAATTG
16173244 AAATTGAGATATGAG-ATTG
1 AAATTGA-AT-TGAGAATTG
16173263 AAA
1 AAA
16173266 ACATGAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 9 0.45
20 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (18 bp):
AAATTGAATTGAGAATTG
Found at i:16180126 original size:46 final size:46
Alignment explanation
Indices: 16180066--16180293 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
16180056 TTTGACATGA
* * * * * ** *
16180066 TGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTC-TGCCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
16180112 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
16180158 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
16180204 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
16180250 TGCCATGGTATCCTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
16180294 AGAGCACACT
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 161 0.98
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:16180460 original size:54 final size:54
Alignment explanation
Indices: 16180327--16180463 Score: 265
Period size: 54 Copynumber: 2.5 Consensus size: 54
16180317 TCCTTACAGT
*
16180327 GGGATTACCAGTCCAGGCTAAATCCACTGTAATATAAACTCATAGAGTATTGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
16180381 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
16180435 GGGATTACCAGTCCAGGCTAAATCCCCTG
1 GGGATTACCAGTCCAGGCTAAATCCCCTG
16180464 CAACAACAAT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (54 bp):
GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
Found at i:16182478 original size:3 final size:3
Alignment explanation
Indices: 16182464--16182512 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
16182454 TTTTATACTA
*
16182464 AAT AATT AAT AAT AA- AAT AAT AAT GA- AAT AAT AAT AA- AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
16182507 AA- AAT A
1 AAT AAT A
16182513 TCTCATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:16182486 original size:11 final size:11
Alignment explanation
Indices: 16182470--16182508 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
16182460 ACTAAATAAT
16182470 TAATAATAAAA
1 TAATAATAAAA
*
16182481 TAATAATGAAA
1 TAATAATAAAA
16182492 TAATAATAAAA
1 TAATAATAAAA
16182503 TAATAA
1 TAATAA
16182509 AATATCTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:16182495 original size:19 final size:19
Alignment explanation
Indices: 16182471--16182512 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
16182461 CTAAATAATT
*
16182471 AATAATAAAATAATAATGA
1 AATAATAAAATAATAATAA
16182490 AATAATAATAA-AATAATAA
1 AATAATAA-AATAATAATAA
16182509 AATA
1 AATA
16182513 TCTCATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
AATAATAAAATAATAATAA
Found at i:16182535 original size:20 final size:21
Alignment explanation
Indices: 16182482--16182557 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 21
16182472 ATAATAAAAT
* *
16182482 AATAATGAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
*
16182501 AATAATAAAATATCTCATTAA
1 AATAATAAAATATCTAATTAA
*
16182522 AATAAT-ATATATCTAATTAAA
1 AATAATAAAATATCTAATT-AA
*
16182543 TAATCATAAAATATC
1 -AATAATAAAATATC
16182558 ATCAACATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 11 0.24
20 12 0.27
21 11 0.24
22 5 0.11
23 6 0.13
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.33
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:16183568 original size:64 final size:64
Alignment explanation
Indices: 16183467--16183595 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
16183457 TCAATACATC
16183467 TATATATGACTTTAATATAGTCTATTTCATAGTTTTAGCTTAATTTTATTGAATGTTATTTAAA
1 TATATATGACTTTAATATAGTCTATTTCATAGTTTTAGCTTAATTTTATTGAATGTTATTTAAA
16183531 TATATATGACTTTAATATAGTCTATTTCATAGTTTTAGCTTAATTTTATTGAATGTTATTTAAA
1 TATATATGACTTTAATATAGTCTATTTCATAGTTTTAGCTTAATTTTATTGAATGTTATTTAAA
16183595 T
1 T
16183596 GAATCAATTA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.33, C:0.06, G:0.09, T:0.52
Consensus pattern (64 bp):
TATATATGACTTTAATATAGTCTATTTCATAGTTTTAGCTTAATTTTATTGAATGTTATTTAAA
Found at i:16184705 original size:21 final size:21
Alignment explanation
Indices: 16184664--16184705 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
16184654 AGAAAATGAC
*
16184664 TAAATTGGAAATTAAATTAAT
1 TAAATTGGAAATTAAACTAAT
*
16184685 TAAATATGGAAA-TAAGCTAAT
1 TAAAT-TGGAAATTAAACTAAT
16184706 ATCATCTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.33
Consensus pattern (21 bp):
TAAATTGGAAATTAAACTAAT
Found at i:16189640 original size:90 final size:90
Alignment explanation
Indices: 16189541--16189720 Score: 360
Period size: 90 Copynumber: 2.0 Consensus size: 90
16189531 TTATAATAAA
16189541 ATTAATTTTATTTCATGCATACTATTAATATCATATTATTTTATACATATAATCCCTTTTAAATT
1 ATTAATTTTATTTCATGCATACTATTAATATCATATTATTTTATACATATAATCCCTTTTAAATT
16189606 TATTCTTATATTTTATTATATAGTC
66 TATTCTTATATTTTATTATATAGTC
16189631 ATTAATTTTATTTCATGCATACTATTAATATCATATTATTTTATACATATAATCCCTTTTAAATT
1 ATTAATTTTATTTCATGCATACTATTAATATCATATTATTTTATACATATAATCCCTTTTAAATT
16189696 TATTCTTATATTTTATTATATAGTC
66 TATTCTTATATTTTATTATATAGTC
16189721 CTACGTAATA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.53
Consensus pattern (90 bp):
ATTAATTTTATTTCATGCATACTATTAATATCATATTATTTTATACATATAATCCCTTTTAAATT
TATTCTTATATTTTATTATATAGTC
Found at i:16190347 original size:35 final size:35
Alignment explanation
Indices: 16190300--16190376 Score: 145
Period size: 35 Copynumber: 2.2 Consensus size: 35
16190290 TGGTGATCAT
16190300 TTTATATTATGCCATGTATGTTAACGTTGTATATTA
1 TTTAT-TTATGCCATGTATGTTAACGTTGTATATTA
16190336 TTTATTTATGCCATGTATGTTAACGTTGTATATTA
1 TTTATTTATGCCATGTATGTTAACGTTGTATATTA
16190371 TTTATT
1 TTTATT
16190377 CATTTTATTG
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 36 0.88
36 5 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (35 bp):
TTTATTTATGCCATGTATGTTAACGTTGTATATTA
Found at i:16191369 original size:19 final size:20
Alignment explanation
Indices: 16191329--16191365 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
16191319 ATTGCTAAGT
16191329 TGTAAAATGAGTTGTAAATA
1 TGTAAAATGAGTTGTAAATA
16191349 TGTAAAAT-AGTTG-AAAT
1 TGTAAAATGAGTTGTAAAT
16191366 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (20 bp):
TGTAAAATGAGTTGTAAATA
Found at i:16193214 original size:50 final size:50
Alignment explanation
Indices: 16193156--16193260 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
16193146 TTTTAATGTG
16193156 AGTA-TGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
16193205 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
16193255 AGTATT
1 AGTATT
16193261 AGTCATGTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 4 0.07
50 51 0.93
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (50 bp):
AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
Found at i:16194232 original size:131 final size:130
Alignment explanation
Indices: 16193990--16194440 Score: 543
Period size: 131 Copynumber: 3.5 Consensus size: 130
16193980 TACATATTCA
* ** * * *
16193990 TTTAAAAATTCTTTAAAATGAAGGCAATACTCGGTGTTTGGCAATTC-GGGAATTGTGCCCTATC
1 TTTAAAAATTCTTCAAAATGAAGGCAATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATC
* * * * *
16194054 GTGCTGGATTGCGATTT-CTCGTTTATTAAAAAAAATCGAATATTCCTTTGGGATTTCACTCATG
66 GTGCTGGGTTGCGATTTCCT-GTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATG
16194118 CT
130 -T
* *
16194120 TTTAAAAATTCTTCAAAATGAAGGTAATGTTCAATGTTTAGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAATGAAGGCAATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATC
* * * *
16194185 GTACTGGGTTGTGATTTCCTGTTTGTTCAAAATAATCGAACATTCCTTTGGAATTTCATTCATGT
66 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
* * * **
16194250 CTTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAATTTAGGGAATCGTGCCCTAT
1 -TTTAAAAATTCTTCAAAATGAAGGCAATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTAT
* * *
16194315 CGTGCTGGGTTGCGATCTCCTGTTTGTTCCAAATAATCGAATATTCCTTTAGAATTTCACTCATG
65 CGTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATG
16194380 T
130 T
* ** * * * * *
16194381 TCTCCAAATTC-T-AAAAT-AAGGCAATGTCCCATGTTTAGAAATTCGAGGAGTCGTGCCCTA
1 TTTAAAAATTCTTCAAAATGAAGGCAATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTA
16194441 CTGTGTTGGG
Statistics
Matches: 276, Mismatches: 42, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
127 34 0.12
128 4 0.01
129 1 0.00
130 49 0.18
131 186 0.67
132 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (130 bp):
TTTAAAAATTCTTCAAAATGAAGGCAATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
Found at i:16200581 original size:2 final size:2
Alignment explanation
Indices: 16200574--16200605 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
16200564 GACACTTCTC
16200574 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16200606 GCATCTCATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16215699 original size:33 final size:33
Alignment explanation
Indices: 16215662--16215728 Score: 93
Period size: 32 Copynumber: 2.0 Consensus size: 33
16215652 AACATGGTTG
16215662 AAGTTTAAAAATCATTATA-AAAATTATA-AAATA
1 AAGTTT-AAAA-CATTATATAAAATTATATAAATA
*
16215695 AAGTTTAAAACATTATATAAAATTTTATAAATA
1 AAGTTTAAAACATTATATAAAATTATATAAATA
16215728 A
1 A
16215729 CTTTTTAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 7 0.23
32 12 0.39
33 12 0.39
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (33 bp):
AAGTTTAAAACATTATATAAAATTATATAAATA
Found at i:16217412 original size:2 final size:2
Alignment explanation
Indices: 16217401--16217432 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
16217391 TTACGACATG
16217401 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16217433 AAAGCCTAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16220540 original size:38 final size:40
Alignment explanation
Indices: 16220486--16220698 Score: 223
Period size: 46 Copynumber: 4.9 Consensus size: 40
16220476 TCTGATATGA
16220486 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
16220526 -A-GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
16220564 ATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ------AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
**
16220615 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTG
1 -AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
16220656 ATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 A-ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
16220699 ATGACAGAAA
Statistics
Matches: 150, Mismatches: 4, Indels: 32
0.81 0.02 0.17
Matches are distributed among these distances:
38 37 0.25
39 1 0.01
40 1 0.01
41 5 0.03
44 2 0.01
45 1 0.01
46 101 0.67
51 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (40 bp):
AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:16220594 original size:46 final size:46
Alignment explanation
Indices: 16220527--16220742 Score: 306
Period size: 46 Copynumber: 4.7 Consensus size: 46
16220517 GGCAACCTGA
16220527 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
16220573 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
** *
16220619 GTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
16220665 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
16220711 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
16220743 TCATGTCAAA
Statistics
Matches: 154, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 154 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:16220721 original size:138 final size:130
Alignment explanation
Indices: 16220477--16220742 Score: 370
Period size: 138 Copynumber: 2.0 Consensus size: 130
16220467 AGTGTGCTCT
*
16220477 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
16220542 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
**
16220607 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
16220672 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
16220737 ATGGCA
123 ATGGCA
16220743 TCATGTCAAA
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
130 47 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.57
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:16222614 original size:2 final size:2
Alignment explanation
Indices: 16222609--16222657 Score: 84
Period size: 2 Copynumber: 25.5 Consensus size: 2
16222599 TTTCTCTCTT
16222609 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16222650 TA TA -A TA T
1 TA TA TA TA T
16222658 TTAATAAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 43 0.96
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:16228650 original size:3 final size:3
Alignment explanation
Indices: 16228642--16228681 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
16228632 GGCATTCGGC
16228642 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
16228682 ATATATGTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:16230845 original size:38 final size:40
Alignment explanation
Indices: 16230786--16230902 Score: 114
Period size: 40 Copynumber: 2.9 Consensus size: 40
16230776 TATGTGTATT
* *
16230786 CGGGCTTAAAGACCCGTAGGCTAT-ATGCTGGTAA-A-ATATC
1 CGGG-TTAAA-ACCCGCAGGCT-TCATGCCGGTAATATATATC
** *
16230826 CGGGTTAAATTCCGCAGGCTTCTTGCCGGTAATATATATC
1 CGGGTTAAAACCCGCAGGCTTCATGCCGGTAATATATATC
* * *
16230866 CGGGTTAAAACCCGCAGGCTTCGTGCTGGTATTATAT
1 CGGGTTAAAACCCGCAGGCTTCATGCCGGTAATATAT
16230903 CTAGGATAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
37 1 0.02
38 16 0.25
39 6 0.09
40 41 0.64
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
CGGGTTAAAACCCGCAGGCTTCATGCCGGTAATATATATC
Found at i:16230870 original size:40 final size:40
Alignment explanation
Indices: 16230821--16230902 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
16230811 TGCTGGTAAA
** *
16230821 ATATCCGGGTTAAATTCCGCAGGCTTCTTGCCGGTAATAT
1 ATATCCGGGTTAAAACCCGCAGGCTTCGTGCCGGTAATAT
* *
16230861 ATATCCGGGTTAAAACCCGCAGGCTTCGTGCTGGTATTAT
1 ATATCCGGGTTAAAACCCGCAGGCTTCGTGCCGGTAATAT
16230901 AT
1 AT
16230903 CTAGGATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (40 bp):
ATATCCGGGTTAAAACCCGCAGGCTTCGTGCCGGTAATAT
Found at i:16230918 original size:38 final size:38
Alignment explanation
Indices: 16230811--16230940 Score: 125
Period size: 38 Copynumber: 3.4 Consensus size: 38
16230801 GTAGGCTATA
** * * * *
16230811 TGCTGGTAAAATATCCGGGTTAAATTCCGCAGGCTTCT
1 TGCTGGTATTATATCCAGGATAAATCCCGCAGGCTTCG
* * * *
16230849 TGCCGGTAATATATATCCGGGTTAAAACCCGCAGGCTTCG
1 TGCTGGT-AT-TATATCCAGGATAAATCCCGCAGGCTTCG
* * *
16230889 TGCTGGTATTATATCTAGGATAAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCCAGGATAAATCCCGCAGGCTTCG
16230927 TGCTGGTATTATAT
1 TGCTGGTATTATAT
16230941 TCGGGCTTTT
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
38 43 0.56
39 3 0.04
40 31 0.40
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (38 bp):
TGCTGGTATTATATCCAGGATAAATCCCGCAGGCTTCG
Found at i:16230998 original size:43 final size:43
Alignment explanation
Indices: 16230917--16231092 Score: 248
Period size: 43 Copynumber: 4.1 Consensus size: 43
16230907 GATAAATCCC
* * * * *
16230917 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCTTTTGTGCCTA
1 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
16230958 GCAGGCTTCGTGCTAGTGACGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
16231001 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTCCGTGCCTA
1 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
16231044 GTAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
16231087 GCAGGC
1 GCAGGC
16231093 GTAATGCCGG
Statistics
Matches: 118, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
41 14 0.12
42 1 0.01
43 103 0.87
ACGTcount: A:0.11, C:0.24, G:0.34, T:0.31
Consensus pattern (43 bp):
GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:16231534 original size:43 final size:45
Alignment explanation
Indices: 16231421--16231547 Score: 163
Period size: 45 Copynumber: 2.9 Consensus size: 45
16231411 TTGATTTGAT
* * ** *
16231421 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
16231466 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT-AC
*
16231511 TA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
16231548 TTTGAGAAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
42 11 0.15
43 16 0.21
44 7 0.09
45 40 0.53
46 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
Found at i:16233467 original size:48 final size:48
Alignment explanation
Indices: 16233396--16233492 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
16233386 TAGCACGTCT
16233396 TATGGATTATCGTGCAATGAATATCTAATTATCATACATTCAAGAACA
1 TATGGATTATCGTGCAATGAATATCTAATTATCATACATTCAAGAACA
16233444 TATGGATTATCGTGCAATGAATATCTAATTATCATACATTCAAGAACA
1 TATGGATTATCGTGCAATGAATATCTAATTATCATACATTCAAGAACA
16233492 T
1 T
16233493 GCATTTTTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (48 bp):
TATGGATTATCGTGCAATGAATATCTAATTATCATACATTCAAGAACA
Found at i:16233474 original size:22 final size:22
Alignment explanation
Indices: 16233401--16233476 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
16233391 CGTCTTATGG
16233401 ATTATCGTGCAATGAATATCTA
1 ATTATCGTGCAATGAATATCTA
* * * * * *
16233423 ATTATCATACATTCAAGAACATATGG
1 ATTATCGTGCA---ATGAATATCT-A
16233449 ATTATCGTGCAATGAATATCTA
1 ATTATCGTGCAATGAATATCTA
16233471 ATTATC
1 ATTATC
16233477 ATACATTCAA
Statistics
Matches: 38, Mismatches: 12, Indels: 8
0.66 0.21 0.14
Matches are distributed among these distances:
22 15 0.39
23 7 0.18
25 7 0.18
26 9 0.24
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (22 bp):
ATTATCGTGCAATGAATATCTA
Found at i:16234797 original size:11 final size:11
Alignment explanation
Indices: 16234781--16234821 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
16234771 AGTGGTGTGC
16234781 CTAATTAGGTT
1 CTAATTAGGTT
16234792 CTAATTAGG-T
1 CTAATTAGGTT
*
16234802 -GAATTAGGTT
1 CTAATTAGGTT
16234812 CTAATTAGGT
1 CTAATTAGGT
16234822 GAATTTAGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 7 0.27
10 2 0.08
11 17 0.65
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (11 bp):
CTAATTAGGTT
Found at i:16234808 original size:20 final size:20
Alignment explanation
Indices: 16234783--16234826 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
16234773 TGGTGTGCCT
16234783 AATTAGGTTCTAATTAGGTG
1 AATTAGGTTCTAATTAGGTG
16234803 AATTAGGTTCTAATTAGGTG
1 AATTAGGTTCTAATTAGGTG
16234823 AATT
1 AATT
16234827 TAGCTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.41
Consensus pattern (20 bp):
AATTAGGTTCTAATTAGGTG
Found at i:16234973 original size:3 final size:3
Alignment explanation
Indices: 16234965--16235054 Score: 137
Period size: 3 Copynumber: 30.3 Consensus size: 3
16234955 AGTAGATTTA
* * * *
16234965 ATT ATT ATT AGT AGT ATT ATT ATA ACT A-T ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
16235012 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
16235055 AAATGAAGCC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
2 2 0.02
3 79 0.98
ACGTcount: A:0.36, C:0.01, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:16235286 original size:23 final size:24
Alignment explanation
Indices: 16235260--16235318 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
16235250 ATAATGACAA
*
16235260 TTGTAATAAAA-ATAT-TGGTACAT
1 TTGTAATAAAAGATATAT-GTACAC
16235283 TTGTAATAAATAGATATATGTACAC
1 TTGTAATAAA-AGATATATGTACAC
*
16235308 TTGTTATAAAA
1 TTGTAATAAAA
16235319 TAATTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 10 0.32
24 2 0.06
25 18 0.58
26 1 0.03
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (24 bp):
TTGTAATAAAAGATATATGTACAC
Found at i:16236906 original size:47 final size:47
Alignment explanation
Indices: 16236847--16236945 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 47
16236837 TTGTGTGTCA
** * *
16236847 TACTGTTACTG-TTACTTCGGTTTAATCCGATGAGGTACTGAGTACCG
1 TACTGTTACTGTTTACTTCGG-CAAAGCCGATGAGGCACTGAGTACCG
*
16236894 TACTGTTACTGTTTACTTCGGCAAAGCCGATGAGGCACTGAGTGCCG
1 TACTGTTACTGTTTACTTCGGCAAAGCCGATGAGGCACTGAGTACCG
16236941 TACTG
1 TACTG
16236946 GTGTGTTGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 37 0.80
48 9 0.20
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (47 bp):
TACTGTTACTGTTTACTTCGGCAAAGCCGATGAGGCACTGAGTACCG
Found at i:16240066 original size:1 final size:1
Alignment explanation
Indices: 16240060--16240087 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
16240050 AGCTAGACCC
16240060 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
16240088 CCTTCTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:16247616 original size:13 final size:13
Alignment explanation
Indices: 16247578--16247609 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
16247568 ATACAATATT
*
16247578 AAAATAAAAAGAA
1 AAAAGAAAAAGAA
16247591 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
16247604 AAAAGA
1 AAAAGA
16247610 GAGAGAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.03
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:16255218 original size:24 final size:24
Alignment explanation
Indices: 16255191--16255236 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
16255181 TTATATACTT
16255191 TTATAATTA-AATTTAAATTTAAAA
1 TTAT-ATTATAATTTAAATTTAAAA
* *
16255215 TTATTTTATTATTTAAATTTAA
1 TTATATTATAATTTAAATTTAA
16255237 TTTGGGCCGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TTATATTATAATTTAAATTTAAAA
Found at i:16263141 original size:35 final size:35
Alignment explanation
Indices: 16263102--16263171 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
16263092 AAAATACAGA
16263102 ATAATCCTCATCAATAGATAGCTACAAAATGAAGG
1 ATAATCCTCATCAATAGATAGCTACAAAATGAAGG
16263137 ATAATCCTCATCAATAGATAGCTACAAAATGAAGG
1 ATAATCCTCATCAATAGATAGCTACAAAATGAAGG
16263172 GAAATTTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.23
Consensus pattern (35 bp):
ATAATCCTCATCAATAGATAGCTACAAAATGAAGG
Found at i:16265265 original size:15 final size:15
Alignment explanation
Indices: 16265247--16265277 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
16265237 AGTTAGAGTT
16265247 AGTTAAAACATAACC
1 AGTTAAAACATAACC
16265262 AGTTAAAACATAACC
1 AGTTAAAACATAACC
16265277 A
1 A
16265278 CTCCTCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.19, G:0.06, T:0.19
Consensus pattern (15 bp):
AGTTAAAACATAACC
Found at i:16267192 original size:9 final size:9
Alignment explanation
Indices: 16267178--16267203 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
16267168 AACCCACAGA
16267178 ATTTTTTTT
1 ATTTTTTTT
16267187 ATTTTTTTT
1 ATTTTTTTT
16267196 ATTTTTTT
1 ATTTTTTT
16267204 CGTATTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:16272043 original size:20 final size:20
Alignment explanation
Indices: 16271983--16272043 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
16271973 TTAATCCAAA
*
16271983 TATATGTAATATTTTAATTTGT
1 TATAT-TAATA-TTTAATATGT
* **
16272005 TA-AGTTTATATTTTTTATGT
1 TATA-TTAATATTTAATATGT
16272025 TATATTAATATTTAATATG
1 TATATTAATATTTAATATG
16272044 AGTTATATAT
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
20 21 0.70
21 6 0.20
22 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
TATATTAATATTTAATATGT
Found at i:16280384 original size:20 final size:19
Alignment explanation
Indices: 16280338--16280396 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
16280328 AAAAGAAGAG
* **
16280338 AAAATTAAAATTAATTCTA
1 AAAAATAAAATTAATTAAA
16280357 AAAAATAAAATTAATTAAA
1 AAAAATAAAATTAATTAAA
16280376 AATAAATAAAAATT-ATTAAA
1 AA-AAAT-AAAATTAATTAAA
16280396 A
1 A
16280397 TTTGGTGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
19 18 0.51
20 11 0.31
21 6 0.17
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATAAAATTAATTAAA
Found at i:16281986 original size:25 final size:25
Alignment explanation
Indices: 16281958--16282009 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
16281948 TTTGGCTTGA
*
16281958 CATTTACTAAGCAATATCATATATT
1 CATTTACTAAGCAATATCAAATATT
* *
16281983 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
16282008 CA
1 CA
16282010 AATTATTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.38
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:16282156 original size:34 final size:34
Alignment explanation
Indices: 16282113--16282181 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
16282103 AGCATGTGAT
*
16282113 CAATTTATGCATAAGTCACTCACATATTTTCCTC
1 CAATTTATGCATAAATCACTCACATATTTTCCTC
*
16282147 CAATTTATGCATAAATCACTTACATATTTTCCTC
1 CAATTTATGCATAAATCACTCACATATTTTCCTC
16282181 C
1 C
16282182 TCCTCCTCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.39
Consensus pattern (34 bp):
CAATTTATGCATAAATCACTCACATATTTTCCTC
Found at i:16283176 original size:25 final size:23
Alignment explanation
Indices: 16283124--16283178 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
16283114 TATAAATAGT
16283124 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
16283147 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
16283172 AATAGTG
1 AATAGTG
16283179 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:16283298 original size:22 final size:23
Alignment explanation
Indices: 16283241--16283307 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 23
16283231 TAGATATAAA
* *
16283241 AAAATATGTACATAATATAGTGT
1 AAAATATATACATAATATAATGT
*
16283264 AAAAAATTCATACATAATATAAT-T
1 AAAATA-T-ATACATAATATAATGT
*
16283288 AAAATATATACATAAGATAA
1 AAAATATATACATAATATAA
16283308 CATGTAGAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 12 0.32
23 6 0.16
24 7 0.19
25 12 0.32
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (23 bp):
AAAATATATACATAATATAATGT
Found at i:16283368 original size:25 final size:25
Alignment explanation
Indices: 16283327--16283457 Score: 91
Period size: 25 Copynumber: 5.6 Consensus size: 25
16283317 AAAAATATAT
16283327 ATATATA-ATAATATAGTATTAA-AG
1 ATATATACATAATATAGTA-TAATAG
* *
16283351 ATATATACATAAAATAGTATAATAT
1 ATATATACATAATATAGTATAATAG
* * *
16283376 ATATATACGTAATATAGAAT-TTAG
1 ATATATACATAATATAGTATAATAG
* *
16283400 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATAATAG
* * *
16283422 A-ATATATATAATATAATATTA-AG
1 ATATATACATAATATAGTATAATAG
*
16283445 AAATATA-ATAATA
1 ATATATACATAATA
16283458 ACAAAAAAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 13
0.76 0.12 0.11
Matches are distributed among these distances:
21 1 0.01
22 15 0.17
23 23 0.26
24 20 0.23
25 28 0.32
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAGTATAATAG
Found at i:16283457 original size:45 final size:47
Alignment explanation
Indices: 16283325--16283457 Score: 121
Period size: 48 Copynumber: 2.8 Consensus size: 47
16283315 AAAAAAATAT
* * * * *
16283325 ATATATATAATAATATAGTATTAAAGATATATACATAAAATAGTATAAT
1 ATATATAT-ATAATATAATATT-AAGAAATATACATAATATAGTAAAAG
* * *
16283374 ATATATATACGTAATATAGA-ATTTAG-AATATACCTAATATATTAAAAG
1 ATATATATA--TAATATA-ATATTAAGAAATATACATAATATAGTAAAAG
16283422 A-ATATATATAATATAATATTAAGAAATATA-ATAATA
1 ATATATATATAATATAATATTAAGAAATATACATAATA
16283458 ACAAAAAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
44 1 0.01
45 17 0.25
46 6 0.09
47 7 0.10
48 18 0.26
49 10 0.14
50 10 0.14
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (47 bp):
ATATATATATAATATAATATTAAGAAATATACATAATATAGTAAAAG
Found at i:16283780 original size:16 final size:16
Alignment explanation
Indices: 16283742--16283780 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
16283732 TCTCCAAAAA
*
16283742 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
16283758 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
16283774 AATAACT
1 AAAAACT
16283781 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:16283996 original size:18 final size:18
Alignment explanation
Indices: 16283973--16284031 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
16283963 GAAGTATGTG
16283973 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
** *
16283991 GTGGAGTGGAGT-TGG-TG
1 GTGGAG-CAAGTGTGGCTA
16284008 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
16284026 GTGGAG
1 GTGGAG
16284032 TTGGTGGTGG
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
16 3 0.09
17 10 0.31
18 16 0.50
19 3 0.09
ACGTcount: A:0.19, C:0.07, G:0.51, T:0.24
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:16284030 original size:30 final size:30
Alignment explanation
Indices: 16283938--16284041 Score: 129
Period size: 30 Copynumber: 3.3 Consensus size: 30
16283928 TAGGTACAAG
* *
16283938 TGGTGGTGGAGCAAGTGTGGCTAATGAAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
16283968 AT-GTGGTGGAGCAAGTGTGGCTAGTGGAGTGGAGT
1 -TGGTGGTGGAGCAAGTGTGGC---T--AGTGGAGT
16284003 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
16284033 TGGTGGTGG
1 TGGTGGTGG
16284042 CAAAGGCTAG
Statistics
Matches: 65, Mismatches: 2, Indels: 13
0.81 0.03 0.16
Matches are distributed among these distances:
30 36 0.55
31 1 0.02
32 1 0.02
33 1 0.02
34 1 0.02
35 25 0.38
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Done.