Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 60 of 335
Found at i:21075373 original size:5 final size:5
Alignment explanation
Indices: 21075355--21075390 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
21075345 TTTCTTTTAT
21075355 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA
21075391 CTTAATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:21084119 original size:38 final size:39
Alignment explanation
Indices: 21084035--21084169 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
21084025 ACCAATATGG
*
21084035 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
21084074 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
21084112 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
21084153 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
21084170 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:21085754 original size:15 final size:15
Alignment explanation
Indices: 21085731--21085766 Score: 63
Period size: 15 Copynumber: 2.3 Consensus size: 15
21085721 TTTCTTTTAT
21085731 ATATAATAATAATATA
1 ATAT-ATAATAATATA
21085747 ATATATAATAATATA
1 ATATATAATAATATA
21085762 ATATA
1 ATATA
21085767 CTTAATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
ATATATAATAATATA
Found at i:21087257 original size:46 final size:44
Alignment explanation
Indices: 21087153--21087260 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
21087143 TGTCTTTGAC
** * * *
21087153 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
21087197 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
21087243 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
21087261 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:21099843 original size:46 final size:44
Alignment explanation
Indices: 21099739--21099846 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
21099729 TGTCTTTGAC
** * * *
21099739 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
21099783 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
21099829 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
21099847 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:21104032 original size:6 final size:6
Alignment explanation
Indices: 21104021--21104067 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
21104011 TTTTAAAGTG
* *
21104021 AAGGGC AAGGGC AAGGGC AAGGGC AAGGGC AAGGAC GAGGGC AAGGG
1 AAGGGC AAGGGC AAGGGC AAGGGC AAGGGC AAGGGC AAGGGC AAGGG
21104068 GATAAGCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.34, C:0.15, G:0.51, T:0.00
Consensus pattern (6 bp):
AAGGGC
Found at i:21116698 original size:43 final size:43
Alignment explanation
Indices: 21116635--21116814 Score: 138
Period size: 43 Copynumber: 4.2 Consensus size: 43
21116625 CAAAGCAACC
*
21116635 AATTGCTTCGGTTTATCCAATGATGCACTATGCGTGCTAATAT
1 AATTGCTTCGATTTATCCAATGATGCACTATGCGTGCTAATAT
* * * *
21116678 AATTGTTTCGATTTGTCCAATGATATTC-CTTATGTGT-C-AATAT
1 AATTGCTTCGATTTATCCAATG--ATGCAC-TATGCGTGCTAATAT
* * *
21116721 AATTACTTCGATTTATTCAATGATGCACTATGCGTG-TCAGTAT
1 AATTGCTTCGATTTATCCAATGATGCACTATGCGTGCT-AATAT
* * * ** *
21116764 AATTGCTTTGGTTTGTCCAACAATGCACCT-TGTGTG-TCAATAT
1 AATTGCTTCGATTTATCCAATGATGCA-CTATGCGTGCT-AATAT
21116807 AATTGCTT
1 AATTGCTT
21116815 TGGCTTGCCC
Statistics
Matches: 108, Mismatches: 21, Indels: 16
0.74 0.14 0.11
Matches are distributed among these distances:
41 9 0.08
42 1 0.01
43 85 0.79
44 4 0.04
45 9 0.08
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.41
Consensus pattern (43 bp):
AATTGCTTCGATTTATCCAATGATGCACTATGCGTGCTAATAT
Found at i:21116800 original size:86 final size:86
Alignment explanation
Indices: 21116635--21116810 Score: 221
Period size: 86 Copynumber: 2.0 Consensus size: 86
21116625 CAAAGCAACC
* * **
21116635 AATTGCTTCGGTTTATCCAATGATGCACTATGCGTGCTAATATAATTGTTTCGATTTGTCCAATG
1 AATTACTTCGATTTATCCAATGATGCACTATGCGTGCTAATATAATTGTTTCGATTTGTCCAACA
**
21116700 ATATTCCTTATGTGTCAATAT
66 ATACACCTTATGTGTCAATAT
* * *
21116721 AATTACTTCGATTTATTCAATGATGCACTATGCGTG-TCAGTATAATTGCTTT-GGTTTGTCCAA
1 AATTACTTCGATTTATCCAATGATGCACTATGCGTGCT-AATATAATTG-TTTCGATTTGTCCAA
* *
21116784 CAATGCACCTTGTGTGTCAATAT
64 CAATACACCTTATGTGTCAATAT
21116807 AATT
1 AATT
21116811 GCTTTGGCTT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
85 1 0.01
86 73 0.95
87 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (86 bp):
AATTACTTCGATTTATCCAATGATGCACTATGCGTGCTAATATAATTGTTTCGATTTGTCCAACA
ATACACCTTATGTGTCAATAT
Found at i:21116848 original size:43 final size:43
Alignment explanation
Indices: 21116743--21116841 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 43
21116733 TTATTCAATG
* * * *
21116743 ATGCACTATGCGTGTCAGTATAATTGCTTTGGTTTGTCCAACA
1 ATGCACTATGTGTGTCAATATAATTGCTTTGGCTTGCCCAACA
* *
21116786 ATGCACCT-TGTGTGTCAATATAATTGCTTTGGCTTGCCCGATA
1 ATGCA-CTATGTGTGTCAATATAATTGCTTTGGCTTGCCCAACA
21116829 ATGCACTATGTGT
1 ATGCACTATGTGT
21116842 ACCAATAACT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
42 2 0.04
43 44 0.92
44 2 0.04
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37
Consensus pattern (43 bp):
ATGCACTATGTGTGTCAATATAATTGCTTTGGCTTGCCCAACA
Found at i:21117362 original size:5 final size:5
Alignment explanation
Indices: 21117345--21117380 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
21117335 AATAATTAAG
21117345 TATAT TATA- -ATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
21117381 TATTGTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.10
5 26 0.90
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:21119764 original size:5 final size:5
Alignment explanation
Indices: 21119754--21119827 Score: 105
Period size: 5 Copynumber: 14.6 Consensus size: 5
21119744 TTTATATATA
*
21119754 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAG A-ATAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT
*
21119804 AAGAAT ATAAT ATAAT ATAAT ATA
1 -ATAAT ATAAT ATAAT ATAAT ATA
21119828 CTTAATTATT
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
4 1 0.02
5 58 0.92
6 3 0.05
7 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:21120757 original size:40 final size:39
Alignment explanation
Indices: 21120709--21120788 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 39
21120699 AATTATGGGA
* *
21120709 TACTGAATATTGTTTTGAATACTGAATTGAACCGTGAAAT
1 TACTGAATAATGTTATGAATACTGAATTGAACCGT-AAAT
* * *
21120749 TACTGAATAATGTTATGTATACTGCATTGAACTGTAAAT
1 TACTGAATAATGTTATGAATACTGAATTGAACCGTAAAT
21120788 T
1 T
21120789 TCTAATGAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
39 5 0.14
40 30 0.86
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (39 bp):
TACTGAATAATGTTATGAATACTGAATTGAACCGTAAAT
Found at i:21121059 original size:45 final size:45
Alignment explanation
Indices: 21120981--21121086 Score: 133
Period size: 45 Copynumber: 2.4 Consensus size: 45
21120971 CGACTACTGT
* * * *
21120981 TACTATTACCGTTACTGTTACCGATTCGACACTTTCTGTGTCGAA
1 TACTGTTACTGTTACTATTACAGATTCGACACTTTCTGTGTCGAA
* *
21121026 TACTGTTACTGTTACTATTACAGATTC-AGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTATTACAGATTCGA-CACTTTCTGTGTCGAA
*
21121071 TACTGTTATTGTTACT
1 TACTGTTACTGTTACT
21121087 GCTACTGCTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
44 1 0.02
45 52 0.98
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTATTACAGATTCGACACTTTCTGTGTCGAA
Found at i:21130668 original size:33 final size:32
Alignment explanation
Indices: 21130627--21130693 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 32
21130617 ATTTTTTTAG
* *
21130627 TTTTTTTTTACAGATT-TTAGAATATTTTCAAT
1 TTTTTTTTTACAGATTCTTA-AAAATTTTAAAT
*
21130659 TTTTATTTTTATAGATTCTTAAAAATTTTAAAT
1 TTTT-TTTTTACAGATTCTTAAAAATTTTAAAT
21130692 TT
1 TT
21130694 CATAGTTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
32 4 0.13
33 23 0.77
34 3 0.10
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.60
Consensus pattern (32 bp):
TTTTTTTTTACAGATTCTTAAAAATTTTAAAT
Found at i:21131196 original size:18 final size:18
Alignment explanation
Indices: 21131173--21131332 Score: 57
Period size: 18 Copynumber: 8.9 Consensus size: 18
21131163 ATATTTTTTC
21131173 TATAAAAATATTAAAAAT
1 TATAAAAATATTAAAAAT
* *
21131191 TATAAAAA-CTGAAAAAT
1 TATAAAAATATTAAAAAT
* * *
21131208 CATAAAAA-ATAAGAAAAC
1 TATAAAAATATTA-AAAAT
* * *
21131226 CATAAAAAAAATTTAAAAAC
1 TAT-AAAAATA-TTAAAAAT
* * **
21131246 CAGAAAGTTA-TAAAAATT
1 TATAAAAATATTAAAAA-T
*
21131264 TATAAAATTATT--AAA-
1 TATAAAAATATTAAAAAT
*
21131279 TATAAAAATATATGAAAAT
1 TATAAAAATAT-TAAAAAT
*
21131298 TGATATAAAAT-TATAAATAT
1 T-ATA-AAAATAT-TAAAAAT
21131318 TATAAAAATA-TAAAA
1 TATAAAAATATTAAAA
21131333 TTCTAATAAT
Statistics
Matches: 110, Mismatches: 19, Indels: 27
0.71 0.12 0.17
Matches are distributed among these distances:
15 10 0.09
16 1 0.01
17 29 0.26
18 30 0.27
19 14 0.13
20 19 0.17
21 7 0.06
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (18 bp):
TATAAAAATATTAAAAAT
Found at i:21131268 original size:10 final size:9
Alignment explanation
Indices: 21131253--21131332 Score: 69
Period size: 9 Copynumber: 8.9 Consensus size: 9
21131243 AACCAGAAAG
21131253 TTATAAAAA
1 TTATAAAAA
21131262 TT-TATAAAA
1 TTATA-AAAA
*
21131271 TTAT-TAAA
1 TTATAAAAA
21131279 -TATAAAAA
1 TTATAAAAA
*
21131287 TATATGAAAA
1 T-TATAAAAA
21131297 TTGATATAAAA
1 TT-ATA-AAAA
*
21131308 TTATAAATA
1 TTATAAAAA
21131317 TTATAAAAA
1 TTATAAAAA
21131326 -TATAAAA
1 TTATAAAA
21131333 TTCTAATAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
7 3 0.05
8 15 0.26
9 20 0.34
10 14 0.24
11 6 0.10
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (9 bp):
TTATAAAAA
Found at i:21131279 original size:17 final size:17
Alignment explanation
Indices: 21131259--21131359 Score: 59
Period size: 17 Copynumber: 5.9 Consensus size: 17
21131249 AAAGTTATAA
21131259 AAATTTATAAAATTATT
1 AAATTTATAAAATTATT
* *
21131276 AAATATA-AAAATATATGA
1 AAATTTATAAAAT-TAT-T
21131294 AAATTGATATAAAATTA-T
1 AAATT--TATAAAATTATT
* *
21131312 AAATATTATAAAAATATA
1 AAAT-TTATAAAATTATT
* *
21131330 AAATTCTA-ATAATT-CT
1 AAATT-TATAAAATTATT
21131346 AAA-TTATAAAATTA
1 AAATTTATAAAATTA
21131360 ATAATACATA
Statistics
Matches: 63, Mismatches: 11, Indels: 21
0.66 0.12 0.22
Matches are distributed among these distances:
14 2 0.03
15 6 0.10
16 8 0.13
17 23 0.37
18 14 0.22
19 1 0.02
20 4 0.06
21 5 0.08
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (17 bp):
AAATTTATAAAATTATT
Found at i:21131334 original size:25 final size:24
Alignment explanation
Indices: 21131300--21131379 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 24
21131290 ATGAAAATTG
21131300 ATATAAAATTATAA-ATATTATAAAA
1 ATATAAAATTATAATA-ATTAT-AAA
* *
21131325 ATATAAAATTCTAATAATTCTAAA
1 ATATAAAATTATAATAATTATAAA
* *
21131349 TTATAAAATTAATAATACATATTTAAA
1 ATATAAAATT-ATAATA-AT-TATAAA
21131376 ATAT
1 ATAT
21131380 TTAAACTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
24 12 0.27
25 22 0.49
26 3 0.07
27 8 0.18
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (24 bp):
ATATAAAATTATAATAATTATAAA
Found at i:21131363 original size:9 final size:8
Alignment explanation
Indices: 21131253--21131359 Score: 74
Period size: 8 Copynumber: 12.4 Consensus size: 8
21131243 AACCAGAAAG
21131253 TTATAAAAA
1 TTAT-AAAA
21131262 TTTATAAAA
1 -TTATAAAA
*
21131271 TTATTAAA
1 TTATAAAA
21131279 -TATAAAAA
1 TTAT-AAAA
21131287 TATATGAAAA
1 T-TAT-AAAA
21131297 TTGATATAAAA
1 -T--TATAAAA
21131308 TTATAAATA
1 TTATAAA-A
21131317 TTATAAAA
1 TTATAAAA
*
21131325 ATATAAAA
1 TTATAAAA
*
21131333 TTCTAATAA
1 TTATAA-AA
*
21131342 TTCT-AAA
1 TTATAAAA
21131349 TTATAAAA
1 TTATAAAA
21131357 TTA
1 TTA
21131360 ATAATACATA
Statistics
Matches: 82, Mismatches: 7, Indels: 18
0.77 0.07 0.17
Matches are distributed among these distances:
7 8 0.10
8 35 0.43
9 18 0.22
10 12 0.15
11 5 0.06
12 4 0.05
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (8 bp):
TTATAAAA
Found at i:21131405 original size:21 final size:22
Alignment explanation
Indices: 21131373--21131422 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
21131363 ATACATATTT
*
21131373 AAAAT-AT-TTAAACTTTTGTA
1 AAAATCATATTAAACTTCTGTA
21131393 AAAA-CATATTAAACTTCTGTA
1 AAAATCATATTAAACTTCTGTA
21131414 AAAATCATA
1 AAAATCATA
21131423 AATATTGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 6 0.23
21 16 0.62
22 4 0.15
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.36
Consensus pattern (22 bp):
AAAATCATATTAAACTTCTGTA
Found at i:21131484 original size:11 final size:10
Alignment explanation
Indices: 21131464--21131493 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
21131454 TTTAATAAAC
21131464 ATATAAAAAA
1 ATATAAAAAA
21131474 ATATAAAAAA
1 ATATAAAAAA
21131484 ATCATAAAAA
1 AT-ATAAAAA
21131494 CTTGAACTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.63
11 7 0.37
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (10 bp):
ATATAAAAAA
Found at i:21131914 original size:9 final size:9
Alignment explanation
Indices: 21131902--21132126 Score: 78
Period size: 9 Copynumber: 24.8 Consensus size: 9
21131892 TTTATGATTT
21131902 TTTTTATAA
1 TTTTTATAA
21131911 TTTTTATAA
1 TTTTTATAA
*
21131920 GTTTATATCAA
1 -TTTTTAT-AA
*
21131931 TTTTAAT-A
1 TTTTTATAA
*
21131939 TTTTTACAA
1 TTTTTATAA
*
21131948 TTTTTATTAT
1 TTTTTA-TAA
*
21131958 TTTTTAGAA
1 TTTTTATAA
* * *
21131967 TTCTAATAC
1 TTTTTATAA
21131976 TTTTT-TAAA
1 TTTTTAT-AA
*
21131985 ATTTTA-AA
1 TTTTTATAA
*
21131993 TATTTA-AA
1 TTTTTATAA
*
21132001 TAAGTTTATTAA
1 T--TTTTA-TAA
21132013 -TTTTATAA
1 TTTTTATAA
21132021 TTTTTTATAA
1 -TTTTTATAA
*
21132031 TTTATTA-GA
1 TTT-TTATAA
**
21132040 TTTTT-TTG
1 TTTTTATAA
*
21132048 TTTTTATGAT
1 TTTTTAT-AA
21132058 TTTTTATAA
1 TTTTTATAA
*
21132067 TTTTAATAA
1 TTTTTATAA
*
21132076 GTTTATATCAA
1 -TTTTTAT-AA
21132087 --TTTA-AA
1 TTTTTATAA
21132093 TATTTTAT-A
1 T-TTTTATAA
21132102 TTTTTAT-A
1 TTTTTATAA
*
21132110 TTTTTCTAAA
1 TTTTTAT-AA
21132120 TTTTTAT
1 TTTTTAT
21132127 TTTTTAAGAT
Statistics
Matches: 159, Mismatches: 33, Indels: 47
0.67 0.14 0.20
Matches are distributed among these distances:
6 2 0.01
8 42 0.26
9 57 0.36
10 52 0.33
11 4 0.03
12 2 0.01
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:21132034 original size:17 final size:17
Alignment explanation
Indices: 21132014--21132132 Score: 59
Period size: 17 Copynumber: 6.8 Consensus size: 17
21132004 GTTTATTAAT
21132014 TTTATAATTTTTTATAA
1 TTTATAATTTTTTATAA
**
21132031 TTTATTAGATTTTTT-TGTT
1 TTTA-TA-ATTTTTTAT-AA
*
21132050 TTTATGATTTTTTATAA
1 TTTATAATTTTTTATAA
* *
21132067 TTTTAATAAGTTTATATCAA
1 -TTT-ATAATTTTTTAT-AA
*
21132087 TTTA-AATATTTTAT-A
1 TTTATAATTTTTTATAA
*
21132102 TTTTTATATTTTTCTA-AA
1 TTTATA-ATTTTT-TATAA
*
21132120 TTT-TTATTTTTTA
1 TTTATAATTTTTTA
21132133 AGATTTTTTG
Statistics
Matches: 77, Mismatches: 14, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
15 6 0.08
16 7 0.09
17 24 0.31
18 15 0.19
19 23 0.30
20 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (17 bp):
TTTATAATTTTTTATAA
Found at i:21132127 original size:16 final size:16
Alignment explanation
Indices: 21132103--21132140 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
21132093 TATTTTATAT
21132103 TTTTATATTTTTCTAA-A
1 TTTT-TATTTTT-TAAGA
21132120 TTTTTATTTTTTAAGA
1 TTTTTATTTTTTAAGA
21132136 TTTTT
1 TTTTT
21132141 TGTGATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.15
16 13 0.65
17 4 0.20
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTTATTTTTTAAGA
Found at i:21132131 original size:26 final size:27
Alignment explanation
Indices: 21132089--21132140 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
21132079 TATATCAATT
* *
21132089 TAAATATTTTATATTTTTATATTTTTC
1 TAAATATTTTATATTTTAAGATTTTTC
*
21132116 TAAAT-TTTTATTTTTTAAGATTTTT
1 TAAATATTTTATATTTTAAGATTTTT
21132141 TGTGATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (27 bp):
TAAATATTTTATATTTTAAGATTTTTC
Found at i:21138685 original size:29 final size:27
Alignment explanation
Indices: 21138625--21138687 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
21138615 AATCCTCCAT
*
21138625 AACACACTAGTATAATATAGCCTCCCA
1 AACACACCAGTATAATATAGCCTCCCA
* * *
21138652 AACACACCAGTATATTATATCCTCCCT
1 AACACACCAGTATAATATAGCCTCCCA
*
21138679 AATACACCA
1 AACACACCA
21138688 ATAAGGCATT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.32, G:0.05, T:0.24
Consensus pattern (27 bp):
AACACACCAGTATAATATAGCCTCCCA
Found at i:21139208 original size:17 final size:17
Alignment explanation
Indices: 21139186--21139220 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
21139176 TGAATTTTTA
*
21139186 TTCAATTTATTCCTAAT
1 TTCAATTTAATCCTAAT
21139203 TTCAATTTAATCCTAAT
1 TTCAATTTAATCCTAAT
21139220 T
1 T
21139221 AACTATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.51
Consensus pattern (17 bp):
TTCAATTTAATCCTAAT
Found at i:21139658 original size:17 final size:17
Alignment explanation
Indices: 21139636--21139668 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21139626 GTTTTCGTTT
21139636 TGTTCTT-TGTTCTTTTC
1 TGTTCTTCT-TTCTTTTC
21139653 TGTTCTTCTTTCTTTT
1 TGTTCTTCTTTCTTTT
21139669 ATTTTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.00, C:0.18, G:0.09, T:0.73
Consensus pattern (17 bp):
TGTTCTTCTTTCTTTTC
Found at i:21139683 original size:22 final size:23
Alignment explanation
Indices: 21139667--21139709 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
21139657 CTTCTTTCTT
21139667 TTATTTTCTTTTATTCTATTTTC
1 TTATTTTCTTTTATTCTATTTTC
*
21139690 TTA-TTTCTTTTAGT-TATTTT
1 TTATTTTCTTTTATTCTATTTT
21139710 ATATTACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 10 0.53
23 3 0.16
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.74
Consensus pattern (23 bp):
TTATTTTCTTTTATTCTATTTTC
Found at i:21139981 original size:2 final size:2
Alignment explanation
Indices: 21139974--21140001 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
21139964 AAATATACAA
21139974 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21140002 TTACATGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21149047 original size:15 final size:14
Alignment explanation
Indices: 21149016--21149061 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
21149006 TGATTTTTTT
*
21149016 AAAATTAAATTAATA
1 AAAATTAAA-TATTA
21149031 AAAATATAAATATTA
1 AAAAT-TAAATATTA
*
21149046 AATATTAAATATTA
1 AAAATTAAATATTA
21149060 AA
1 AA
21149062 TTTATCACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 11 0.39
15 13 0.46
16 4 0.14
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
AAAATTAAATATTA
Found at i:21149049 original size:7 final size:7
Alignment explanation
Indices: 21149014--21149062 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
21149004 TTTGATTTTT
21149014 TTAAA-A
1 TTAAATA
21149020 TTAAATTA
1 TTAAA-TA
* *
21149028 ATAAAAA
1 TTAAATA
21149035 TATAAATA
1 T-TAAATA
21149043 TTAAATA
1 TTAAATA
21149050 TTAAATA
1 TTAAATA
21149057 TTAAAT
1 TTAAAT
21149063 TTATCACTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
6 5 0.14
7 20 0.56
8 11 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
TTAAATA
Found at i:21161841 original size:6 final size:6
Alignment explanation
Indices: 21161830--21161857 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
21161820 ACTTTTTTAA
21161830 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
21161858 TCAGTTCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:21166858 original size:26 final size:26
Alignment explanation
Indices: 21166822--21166873 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21166812 AGCAGGTAGA
21166822 TACACTCTTGTTGATTCCCCTTTTTT
1 TACACTCTTGTTGATTCCCCTTTTTT
*
21166848 TACACTCTTGTTGGTTCCCCTTTTTT
1 TACACTCTTGTTGATTCCCCTTTTTT
21166874 GTATTTCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.10, C:0.27, G:0.10, T:0.54
Consensus pattern (26 bp):
TACACTCTTGTTGATTCCCCTTTTTT
Found at i:21172373 original size:38 final size:39
Alignment explanation
Indices: 21172331--21172484 Score: 231
Period size: 38 Copynumber: 4.0 Consensus size: 39
21172321 CACTCTATAT
* *
21172331 ATATATCCGGGTT-AAGTCCCGTAGGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTGGTA
21172369 ATATATCCGGGTT-AAGTCCCGCAGGCTTTGTGCTGGTA
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTGGTA
* *
21172407 ATTTATCCGGGTTAAAGTCCCGCAGGCTTAGTGCTGGTA
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTGGTA
* *
21172446 TTATATCCGAGTTTAAAGTCCCGCAGGCTTTGTGCTGGT
1 ATATATCCG-GGTTAAAGTCCCGCAGGCTTTGTGCTGGT
21172485 GACTGAATTT
Statistics
Matches: 106, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 48 0.45
39 31 0.29
40 27 0.25
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (39 bp):
ATATATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTGGTA
Found at i:21172434 original size:77 final size:78
Alignment explanation
Indices: 21172334--21172484 Score: 243
Period size: 77 Copynumber: 1.9 Consensus size: 78
21172324 TCTATATATA
* *
21172334 TATCCGGGTTAAGTCCCGTAGGCTTCGTGCTGGTAATATATCCG-GGTT-AAGTCCCGCAGGCTT
1 TATCCGGGTTAAGTCCCGCAGGCTTAGTGCTGGTAATATATCCGAGGTTAAAGTCCCGCAGGCTT
21172397 TGTGCTGGTAATT
66 TGTGCTGGTAATT
* *
21172410 TATCCGGGTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCCGAGTTTAAAGTCCCGCAGGCT
1 TATCCGGGTT-AAGTCCCGCAGGCTTAGTGCTGGTAATATATCCGAGGTTAAAGTCCCGCAGGCT
21172475 TTGTGCTGGT
65 TTGTGCTGGT
21172485 GACTGAATTT
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
76 10 0.15
77 31 0.46
78 3 0.04
79 24 0.35
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.32
Consensus pattern (78 bp):
TATCCGGGTTAAGTCCCGCAGGCTTAGTGCTGGTAATATATCCGAGGTTAAAGTCCCGCAGGCTT
TGTGCTGGTAATT
Found at i:21173902 original size:10 final size:10
Alignment explanation
Indices: 21173887--21173923 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
21173877 CAAGTGTATG
21173887 AAAAAAATAA
1 AAAAAAATAA
21173897 AAAAAAAT--
1 AAAAAAATAA
21173905 AAAAAAATAA
1 AAAAAAATAA
*
21173915 AAATAAATA
1 AAAAAAATA
21173924 CATGTGTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
8 8 0.33
10 16 0.67
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:21173910 original size:18 final size:18
Alignment explanation
Indices: 21173887--21173923 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
21173877 CAAGTGTATG
21173887 AAAAAAATAAAAAAAAAT
1 AAAAAAATAAAAAAAAAT
*
21173905 AAAAAAATAAAAATAAAT
1 AAAAAAATAAAAAAAAAT
21173923 A
1 A
21173924 CATGTGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAAAATAAAAAAAAAT
Found at i:21174316 original size:2 final size:2
Alignment explanation
Indices: 21174304--21174340 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
21174294 ATAATGTTAT
21174304 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21174341 ACAAAACTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:21176925 original size:39 final size:39
Alignment explanation
Indices: 21176815--21176999 Score: 282
Period size: 39 Copynumber: 4.7 Consensus size: 39
21176805 CTCGTTCAAA
* * * *
21176815 TGCCTTCGGGACATAGCCCGGTTAT-AGTAACTCGCACAAA
1 TGCCTTCGGG-CTTAGCCCGGATATCA-CAACTCGCACAAT
*
21176855 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
21176895 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
21176934 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
21176973 TGCCTTCGGGCTTAGCCCGGTTATCAC
1 TGCCTTCGGGCTTAGCCCGGATATCAC
21177000 CCGAACATTC
Statistics
Matches: 137, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 93 0.68
40 43 0.31
41 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:21179340 original size:53 final size:53
Alignment explanation
Indices: 21179259--21179409 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
21179249 CTTACACGGT
* *
21179259 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
21179314 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
21179367 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
21179410 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:21186856 original size:53 final size:53
Alignment explanation
Indices: 21186775--21186925 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
21186765 CTTACACGGT
* *
21186775 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
21186830 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
21186883 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
21186926 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:21197363 original size:18 final size:19
Alignment explanation
Indices: 21197340--21197377 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
21197330 TTTTATCTTA
21197340 AAAT-AAATTATAGATTTT
1 AAATAAAATTATAGATTTT
*
21197358 AAATAAAATTATATATTTT
1 AAATAAAATTATAGATTTT
21197377 A
1 A
21197378 TTGTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
AAATAAAATTATAGATTTT
Found at i:21202783 original size:27 final size:28
Alignment explanation
Indices: 21202745--21202799 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
21202735 TATATATGAT
* *
21202745 TAATCCAAAAAA-TATAAAAAAAACCAA
1 TAATCCAAAAAAGGAAAAAAAAAACCAA
*
21202772 TAATCCATAAAAGGAAAAAAAAAACCAA
1 TAATCCAAAAAAGGAAAAAAAAAACCAA
21202800 AGTAATGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.69, C:0.15, G:0.04, T:0.13
Consensus pattern (28 bp):
TAATCCAAAAAAGGAAAAAAAAAACCAA
Found at i:21204910 original size:26 final size:28
Alignment explanation
Indices: 21204880--21204935 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
21204870 AAAATTATTA
21204880 TTTTAGAAA-AATTTAAATTTTAAA-AT
1 TTTTAGAAATAATTTAAATTTTAAATAT
* * *
21204906 TTTTATAAATATTTTTAATTTTAAATAT
1 TTTTAGAAATAATTTAAATTTTAAATAT
21204934 TT
1 TT
21204936 GAAAATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 8 0.32
27 13 0.52
28 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (28 bp):
TTTTAGAAATAATTTAAATTTTAAATAT
Found at i:21219411 original size:18 final size:19
Alignment explanation
Indices: 21219388--21219426 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
21219378 ATATATTCAC
21219388 ACATTTTCA-CAATTCAAT
1 ACATTTTCATCAATTCAAT
21219406 ACATTTTCATTCAATTCAAT
1 ACATTTTCA-TCAATTCAAT
21219426 A
1 A
21219427 TTGATACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (19 bp):
ACATTTTCATCAATTCAAT
Found at i:21219617 original size:6 final size:6
Alignment explanation
Indices: 21219606--21219630 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
21219596 CCTTTCCTTT
21219606 CGATGC CGATGC CGATGC CGATGC C
1 CGATGC CGATGC CGATGC CGATGC C
21219631 TCGGATTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (6 bp):
CGATGC
Found at i:21219782 original size:17 final size:19
Alignment explanation
Indices: 21219755--21219793 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 19
21219745 CCTTCATTCC
21219755 TTTCTTTTATTCTTTTA-G
1 TTTCTTTTATTCTTTTATG
21219773 TTTC-TTTATTCTTTTATG
1 TTTCTTTTATTCTTTTATG
21219791 TTT
1 TTT
21219794 ATAATTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTCTTTTATTCTTTTATG
Found at i:21220053 original size:23 final size:23
Alignment explanation
Indices: 21220009--21220053 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
21219999 AAAAGTAATT
*
21220009 AAATAAATATATTACAATTGTAC
1 AAATAAATATATTACAAGTGTAC
*
21220032 AAATATAAT-TATTACACGTGTA
1 AAATA-AATATATTACAAGTGTA
21220054 TATTTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.36
Consensus pattern (23 bp):
AAATAAATATATTACAAGTGTAC
Found at i:21221297 original size:2 final size:2
Alignment explanation
Indices: 21221287--21221322 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
21221277 AAAAAAGTAG
21221287 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21221323 TAAATAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:21221510 original size:16 final size:16
Alignment explanation
Indices: 21221486--21221521 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
21221476 TTATGTTTAG
*
21221486 AATATTAACAATTTTT
1 AATACTAACAATTTTT
*
21221502 AATACTAACTATTTTT
1 AATACTAACAATTTTT
21221518 AATA
1 AATA
21221522 TTGACAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (16 bp):
AATACTAACAATTTTT
Found at i:21224766 original size:78 final size:78
Alignment explanation
Indices: 21224633--21224796 Score: 240
Period size: 78 Copynumber: 2.1 Consensus size: 78
21224623 CTTTATCATA
* * * * *
21224633 ATTAGTCGATTGAATTTTAACTTTATCAATATAGAAATACGTGAATTCGAGTATACTGAAAGTCT
1 ATTAGTTGATTGAATCTTAACTGTATCAATATAGAAAGACGTGAATTCGAATATACTGAAAGTCT
21224698 TATTCTTCTATTT
66 TATTCTTCTATTT
*
21224711 ATTAGTTGATTGAGTCTTAACTGTATCAATATA-AAAGGACGTGAATTCGAATATACTGAAAGTC
1 ATTAGTTGATTGAATCTTAACTGTATCAATATAGAAA-GACGTGAATTCGAATATACTGAAAGTC
*
21224775 TTATTTTTCTATTT
65 TTATTCTTCTATTT
*
21224789 ATGAGTTG
1 ATTAGTTG
21224797 GAGAGAGACT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 3 0.04
78 74 0.96
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (78 bp):
ATTAGTTGATTGAATCTTAACTGTATCAATATAGAAAGACGTGAATTCGAATATACTGAAAGTCT
TATTCTTCTATTT
Found at i:21224994 original size:17 final size:17
Alignment explanation
Indices: 21224957--21224994 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
21224947 TAATTCTCAA
*
21224957 ATAAGTAAATTATGATT
1 ATAAGTAAATTATGATG
*
21224974 ATAAGTAAATTATTATG
1 ATAAGTAAATTATGATG
21224991 ATAA
1 ATAA
21224995 ATTATGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (17 bp):
ATAAGTAAATTATGATG
Found at i:21227566 original size:13 final size:13
Alignment explanation
Indices: 21227548--21227574 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21227538 AAGGATTGAG
21227548 AGCTAAAATTACA
1 AGCTAAAATTACA
21227561 AGCTAAAATTACA
1 AGCTAAAATTACA
21227574 A
1 A
21227575 ATTATCATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (13 bp):
AGCTAAAATTACA
Found at i:21231916 original size:5 final size:5
Alignment explanation
Indices: 21231906--21231937 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
21231896 GAAGAAGTAG
21231906 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AA
21231938 TGGCAAAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:21238434 original size:38 final size:40
Alignment explanation
Indices: 21238380--21238592 Score: 223
Period size: 46 Copynumber: 4.9 Consensus size: 40
21238370 TCTGATATGA
21238380 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
21238420 -A-GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
21238458 ATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ------AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
**
21238509 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTG
1 -AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
21238550 ATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 A-ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
21238593 ATGACAGAAA
Statistics
Matches: 150, Mismatches: 4, Indels: 32
0.81 0.02 0.17
Matches are distributed among these distances:
38 37 0.25
39 1 0.01
40 1 0.01
41 5 0.03
44 2 0.01
45 1 0.01
46 101 0.67
51 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (40 bp):
AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:21238488 original size:46 final size:46
Alignment explanation
Indices: 21238421--21238636 Score: 306
Period size: 46 Copynumber: 4.7 Consensus size: 46
21238411 GGCAACCTGA
21238421 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
21238467 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
** *
21238513 GTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
21238559 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
21238605 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
21238637 TCATGTCAAA
Statistics
Matches: 154, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 154 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:21238615 original size:138 final size:130
Alignment explanation
Indices: 21238371--21238636 Score: 370
Period size: 138 Copynumber: 2.0 Consensus size: 130
21238361 AGTGTGCTCT
*
21238371 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
21238436 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
**
21238501 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
21238566 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
21238631 ATGGCA
123 ATGGCA
21238637 TCATGTCAAA
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
130 47 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.57
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:21242408 original size:33 final size:33
Alignment explanation
Indices: 21242366--21242437 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
21242356 ATTACCATAA
21242366 ATTAAATTTCAAAACAACTAGATATGATTCTAG
1 ATTAAATTTCAAAACAACTAGATATGATTCTAG
21242399 ATTAAATTTCAAAACAACTAGATATGATTCTAG
1 ATTAAATTTCAAAACAACTAGATATGATTCTAG
21242432 ATTAAA
1 ATTAAA
21242438 AAAATAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.33
Consensus pattern (33 bp):
ATTAAATTTCAAAACAACTAGATATGATTCTAG
Found at i:21243210 original size:17 final size:19
Alignment explanation
Indices: 21243176--21243243 Score: 58
Period size: 19 Copynumber: 3.8 Consensus size: 19
21243166 TGTCATACTT
21243176 TATAATTATAATTATTATA
1 TATAATTATAATTATTATA
21243195 TATAATT-T-ATT-TT-TA
1 TATAATTATAATTATTATA
*
21243210 T-TAATATATTAATTATTGT-
1 TATAAT-TA-TAATTATTATA
*
21243229 TACAATTATAATTAT
1 TATAATTATAATTAT
21243244 GGTTGGTGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 15
0.72 0.02 0.26
Matches are distributed among these distances:
14 4 0.10
15 4 0.10
16 2 0.05
17 4 0.10
18 11 0.27
19 12 0.29
20 4 0.10
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (19 bp):
TATAATTATAATTATTATA
Found at i:21245852 original size:53 final size:53
Alignment explanation
Indices: 21245771--21245921 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
21245761 CTTACACGGT
* *
21245771 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAACCCAG-CTATGGTCTTATACGGAATCACATTA
*
21245826 TCACATTATACCGATGCCATAACCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAACCCAGCTATGGTCTTATACGGAATCACATTA
** * *
21245879 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAACCCAGCTATGGTCTTATACGG
21245922 GCGCACTTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAACCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:21252879 original size:53 final size:53
Alignment explanation
Indices: 21252798--21252948 Score: 196
Period size: 53 Copynumber: 2.8 Consensus size: 53
21252788 CTTACACGGT
* *
21252798 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
21252853 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
* ** * *
21252906 TAACATTGCACCGATGCCATAGCCCAGCTATGATCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
21252949 GCGCACTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 79 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:21256889 original size:25 final size:22
Alignment explanation
Indices: 21256855--21256945 Score: 71
Period size: 23 Copynumber: 4.0 Consensus size: 22
21256845 GGGGGGTGGG
*
21256855 TTTTTGGTTTTTTGGAGAAGGAT
1 TTTTTTGTTTTTTGGAGAAGG-T
*
21256878 TGTTCTTTG--TTTTGGAGGAGGT
1 T-TT-TTTGTTTTTTGGAGAAGGT
21256900 TTTTTTGTTTTTTTGGAAAGAAGGT
1 TTTTTTG-TTTTTTGG--AGAAGGT
*
21256925 TATTTTTGTTTCTTGGA-AAGG
1 T-TTTTTGTTTTTTGGAGAAGG
21256946 CTAGTTTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
20 4 0.07
21 2 0.04
22 6 0.11
23 19 0.34
24 2 0.04
25 17 0.30
26 6 0.11
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (22 bp):
TTTTTTGTTTTTTGGAGAAGGT
Found at i:21256913 original size:23 final size:23
Alignment explanation
Indices: 21256855--21256935 Score: 74
Period size: 23 Copynumber: 3.4 Consensus size: 23
21256845 GGGGGGTGGG
*
21256855 TTTTTGGTTTTTTGGAGAAGGATT
1 TTTTTGTTTTTTTGGAGAAGG-TT
* * * *
21256879 GTTCT-TTGTTTTGGAGGAGGTT
1 TTTTTGTTTTTTTGGAGAAGGTT
21256901 TTTTTGTTTTTTTGGAAAGAAGGTT
1 TTTTTGTTTTTTTGG--AGAAGGTT
21256926 ATTTTTGTTT
1 -TTTTTGTTT
21256936 CTTGGAAAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
22 5 0.11
23 20 0.45
24 3 0.07
25 7 0.16
26 9 0.20
ACGTcount: A:0.15, C:0.01, G:0.27, T:0.57
Consensus pattern (23 bp):
TTTTTGTTTTTTTGGAGAAGGTT
Found at i:21256935 original size:26 final size:24
Alignment explanation
Indices: 21256896--21256944 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
21256886 GTTTTGGAGG
*
21256896 AGGTTTTTTTGTTTTTTTGGAAAGA
1 AGGTTTTTTTG-TTTCTTGGAAAGA
21256921 AGGTTATTTTTGTTTCTTGGAAAG
1 AGGTT-TTTTTGTTTCTTGGAAAG
21256945 GCTAGTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.53
Consensus pattern (24 bp):
AGGTTTTTTTGTTTCTTGGAAAGA
Found at i:21257258 original size:3 final size:3
Alignment explanation
Indices: 21257244--21257329 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
21257234 GAGCTTTGTT
* *
21257244 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* *
21257288 TTCC TCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TT-A TTA T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
21257330 ATATGCCCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 6 0.09
3 52 0.79
4 8 0.12
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:21257282 original size:27 final size:27
Alignment explanation
Indices: 21257243--21257329 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
21257233 AGAGCTTTGT
21257243 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
* * *
21257270 TTTATATTATTATTATTATT-C-CTCA
1 TTTATATTATTATTATTTTTACTATTA
* * *
21257295 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
21257321 -TTATATTAT
1 TTTATATTAT
21257330 ATATGCCCTC
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 10 0.22
27 14 0.30
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:21257385 original size:15 final size:15
Alignment explanation
Indices: 21257350--21257387 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
21257340 TTCATATTTA
21257350 TTTA-TATTATTACT
1 TTTATTATTATTACT
* *
21257364 ATCATTATTATTACT
1 TTTATTATTATTACT
21257379 TTTATTATT
1 TTTATTATT
21257388 TTTATTTCTA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTATTATTATTACT
Found at i:21261502 original size:14 final size:15
Alignment explanation
Indices: 21261483--21261519 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
21261473 CTTTAAGACC
21261483 AAAAAAAGAAAAA-A
1 AAAAAAAGAAAAAGA
21261497 AAAAAAAGAAAAAGA
1 AAAAAAAGAAAAAGA
*
21261512 AGAAAAAG
1 AAAAAAAG
21261520 GAGAGGCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAAAAGA
Found at i:21262736 original size:66 final size:66
Alignment explanation
Indices: 21262636--21262762 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
21262626 CATTCATATA
*
21262636 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
21262701 C
66 C
* *
21262702 ATAACACATCTGGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
21262763 TAAGCATAGA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:21264268 original size:44 final size:45
Alignment explanation
Indices: 21264178--21264306 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
21264168 GACAGAACGA
*
21264178 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
21264224 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
21264268 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
21264307 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:21265777 original size:86 final size:86
Alignment explanation
Indices: 21265631--21266181 Score: 325
Period size: 86 Copynumber: 6.3 Consensus size: 86
21265621 TTTACAAGCC
* * *
21265631 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAGACCG-A-A-TTGCAGATCTTAACCCCCTAAGCAGTAGG
21265696 GAAACAGATCGAAGACGAAGGG-T
63 GAAACAGATCGAAGACGAAGGGCT
* * * *
21265719 CTTAAACCTCTAATCGGTAGGGTAACAGACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGA
1 -TTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGCAGATCTTAACCCCCTAAGCAGTAGGGA
* *
21265784 AACAGATCGAAGATGATGGGCT
65 AACAGATCGAAGACGAAGGGCT
* * * * * *
21265806 TTAACCCCCTAAGCAGTAGGGTAACA-AGCTGAATTTACA-AGCCTTAAACCTCTAAGCAGTAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAGA-CCGAA-TTGCAGA-TCTTAACCCCCTAAGCAGTAGG
* * ** **
21265869 GTAACAG-GCTGAAGATTTACAGATC-
63 GAAACAGATC-GAAGA-CGA-AGGGCT
* * * ** * * * * *
21265894 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGG
1 TTAAACCCCTAAGCAGTAGGGTAACAGACCGAA-TTGCA-GATCTTAACCCCCTAAGCAGTAGGG
* ** * **
21265959 TAACAGATCGAA-TTGCAGATC-
64 AAACAGATCGAAGACGAAGGGCT
** * * * **
21265980 TTATTCCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATGGGCTTTAACCCCCTAAGCAGTAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAGACCGAA-TTGCA-GATC-TTAACCCCCTAAGCAGTAGG
* * * *
21266044 GTAACA-AGCCGAATTTAC-AA--GCC
63 GAAACAGA-TCGAA--GACGAAGGGCT
* * * *
21266067 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCTCTAAGCAGTAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAGACCG-A-A-TTGCAGATCTTAACCCCCTAAGCAGTAGG
* *
21266132 GAAACAGATCGAAGATGATGGGCT
63 GAAACAGATCGAAGACGAAGGGCT
* *
21266156 TTAACCCCCTAAACAGTAGGGTAACA
1 TTAAACCCCTAAGCAGTAGGGTAACA
21266182 AGCCAAATTT
Statistics
Matches: 363, Mismatches: 75, Indels: 48
0.75 0.15 0.10
Matches are distributed among these distances:
85 6 0.02
86 143 0.39
87 62 0.17
88 62 0.17
89 88 0.24
90 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (86 bp):
TTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGCAGATCTTAACCCCCTAAGCAGTAGGGAA
ACAGATCGAAGACGAAGGGCT
Found at i:21265817 original size:218 final size:218
Alignment explanation
Indices: 21265543--21266181 Score: 1163
Period size: 218 Copynumber: 2.9 Consensus size: 218
21265533 GAGTGTTACA
21265543 CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
21265608 GTAACAAGCTGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAG
66 GTAACAAGCTGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAG
*
21265673 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCTCTAATCGGTA
131 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTA
21265738 GGGTAACAGACCGAATTGCAGAT
196 GGGTAACAGACCGAATTGCAGAT
21265761 CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
*
21265826 GTAACAAGCTGAATTTACAAGCCTTAAACCTCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAG
66 GTAACAAGCTGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAG
21265891 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTA
131 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTA
*
21265956 GGGTAACAGATCGAATTGCAGAT
196 GGGTAACAGACCGAATTGCAGAT
*
21265979 CTTATTCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
*
21266044 GTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAG
66 GTAACAAGCTGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAG
* * * * * *
21266109 ATCTTAACCCTCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG-CTTTAACCCCCTAAACAGT
131 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTC-TTAAACCCCTAATCGGT
21266173 AGGGTAACA
195 AGGGTAACA
21266182 AGCCAAATTT
Statistics
Matches: 408, Mismatches: 12, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
217 1 0.00
218 407 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (218 bp):
CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
GTAACAAGCTGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAG
ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTA
GGGTAACAGACCGAATTGCAGAT
Found at i:21265972 original size:132 final size:132
Alignment explanation
Indices: 21265543--21265973 Score: 427
Period size: 132 Copynumber: 3.3 Consensus size: 132
21265533 GAGTGTTACA
* * * * * * *
21265543 CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAA--GATGATGGGCTTTAACCCCCTAAGCAGTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAATTGACGA-AGGCCTTAAACCTCTAAGCAGTA
* * * * * *
21265606 GGGTAACAAGCTGAATTTACA-AGCCTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTT
65 GGGTAACAGGCTGAATTTACAGA-TCTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TG
*
21265669 ACA-GAT
127 A-AGGGT
* * * *
21265675 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAA--GACGAAGGGTCTTAAACCTCTAATCGGTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAATTGACGAA-GGCCTTAAACCTCTAAGCAGTA
* * * * *
21265738 GGGTAACAGACCGAA-TTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATG
65 GGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAG
21265802 GG-
130 GGT
* *
21265804 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTGAATTTAC-AA-GCCTTAAACCTCTAAGCAGT
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAATTGACGAAGGCCTTAAACCTCTAAGCAGT
*
21265866 AGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACG
64 AGGGTAACAGGCTG-A-ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATG
21265931 AAGGGT
127 AAGGGT
* * *
21265937 CTTAAACCCCTAATCGGTAGGGTAACAGATCGAATTG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAATTG
21265974 CAGATCTTAT
Statistics
Matches: 248, Mismatches: 38, Indels: 26
0.79 0.12 0.08
Matches are distributed among these distances:
129 32 0.13
130 32 0.13
131 37 0.15
132 144 0.58
133 3 0.01
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (132 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAATTGACGAAGGCCTTAAACCTCTAAGCAGTAG
GGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGG
GT
Found at i:21266135 original size:132 final size:129
Alignment explanation
Indices: 21265806--21266313 Score: 528
Period size: 132 Copynumber: 3.9 Consensus size: 129
21265796 ATGATGGGCT
* * *
21265806 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACA-AGCCTTAAACCTCTAAGCAGTAGGG
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAGA-TCTT-AACCCCTAAGCAGTAGGG
* * * ** * * * *
21265870 TAACAG-GCTGAAGAT-TTACAGATCTTAACCCCCTAAGCAGTAGGGAAAC-AGATCGAA--GAC
64 AAACAGATC-GAAGATGAT-GGGCT-TTAACCCCCTAAGCAGTAGGGTAACAAG-CCGAATTTAC
*
21265930 GAAGGGTC
125 -AA--GCC
* * * * *
21265938 TTAAACCCCTAATCGGTAGGGTAAC-AGATCGAA-TTGCAGATCTTATTCCCCTAAGCAGTAGGG
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCT-GAATTTACAGATCTTA-ACCCCTAAGCAGTAGGG
21266001 AAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGC
64 AAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGC
21266066 C
129 C
*
21266067 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCTCTAAGCAGTAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCTG-A-ATTTACAGATCTTAACCC-CTAAGCAGTAGG
* *
21266132 GAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAACAGTAGGGTAACAAGCCAAATTTACAAG
63 GAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAG
21266197 CC
128 CC
* * * * * *
21266199 TTAACCCCCTGAGCAGTAGGATAACAAGCTGAAGATTTACAGATCTTAACCCCTTAAGTAGTTGA
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCTG-A-ATTTACAGATCTTAACCCC-TAAGCAGTAGG
* * * *
21266264 GAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAGTAGGGTAACA
63 GAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA
21266314 GGCTAGAAAT
Statistics
Matches: 324, Mismatches: 38, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
129 26 0.08
130 32 0.10
131 47 0.15
132 219 0.68
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (129 bp):
TTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAGATCTTAACCCCTAAGCAGTAGGGAA
ACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCC
Found at i:21266193 original size:350 final size:349
Alignment explanation
Indices: 21265543--21266328 Score: 966
Period size: 350 Copynumber: 2.2 Consensus size: 349
21265533 GAGTGTTACA
* * *
21265543 CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGC-TTAAACCCCTAATCAGTAGG
* *
21265608 GTAACA-AGCTGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACA
65 GTAACAGAGCTGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGAAACAGGCTGAAGATATACA
* * * * *
21265672 GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCTCTAATCGGT
130 GATCTTAACCCCCTAAGCAGTAGGGAAACAGACCGAAGACGAA-GGCCTTAAACCCCTAAGCAGT
* *
21265737 AGGGTAACAGACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATG
194 AGGGTAACAGACCGAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATG
* ** *
21265802 GGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAGCCTTAAACCTCTAAGCAGTA
259 GGCTTTAACCCCCTAAACAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTA
* *
21265867 GGGTAACAGGCTGAAGATTTACAGAT
324 GGATAACAAGCTGAAGATTTACAGAT
* * *
21265893 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG-CTTAAACCCCTAATCAGTAGG
* * * ** *
21265958 GTAACAGATC-GAA-TTGC-AGATCTTATTCCCCTAAGCAGTAGGGAAACA-GATCGAAGATGAT
65 GTAACAGAGCTGAATTTACAAG-CCTTAAACCCCTAAGCAGTAGGGAAACAGGCT-GAAGAT-AT
** * * *
21266019 -GGGCT-TTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTAC-AA-GCCTTAAACCCCTAA
127 ACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA-CCGAA--GACGAAGGCCTTAAACCCCTAA
* * *
21266079 GCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCTCTAAGCAGTAGGGAAACAGATCGA
189 GCAGTAGGGTAACAGACCG-A-A-TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGA
*
21266144 AGATGATGGGCTTTAACCCCCTAAACAGTAGGGTAACAAGCCAAATTTACAAGCCTTAACCCCCT
251 AGATGATGGGCTTTAACCCCCTAAACAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCT
*
21266209 GAGCAGTAGGATAACAAGCTGAAGATTTACAGAT
316 AAGCAGTAGGATAACAAGCTGAAGATTTACAGAT
* * * * *
21266243 CTTAACCCCTTAAGTAGTTGAGAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGT-AGTAG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG-CTTAAACCCCTAA-TCAGTAG
*
21266307 GGTAACAG-GCTAGAAATTACAA
64 GGTAACAGAGCT-GAATTTACAA
21266329 ATTTCTTTTT
Statistics
Matches: 372, Mismatches: 48, Indels: 29
0.83 0.11 0.06
Matches are distributed among these distances:
347 29 0.08
348 34 0.09
349 39 0.10
350 259 0.70
351 7 0.02
352 3 0.01
353 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (349 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTAAACCCCTAATCAGTAGGG
TAACAGAGCTGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGAAACAGGCTGAAGATATACAG
ATCTTAACCCCCTAAGCAGTAGGGAAACAGACCGAAGACGAAGGCCTTAAACCCCTAAGCAGTAG
GGTAACAGACCGAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG
CTTTAACCCCCTAAACAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAGG
ATAACAAGCTGAAGATTTACAGAT
Found at i:21266449 original size:68 final size:67
Alignment explanation
Indices: 21266332--21266529 Score: 301
Period size: 68 Copynumber: 2.9 Consensus size: 67
21266322 ATTACAAATT
*
21266332 TCTTTT-TCCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA-A
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCACA
21266395 AGGA
66 A--A
* *
21266399 TCTTTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGC
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA-C
21266464 AAA
65 AAA
* * *
21266467 CCTCTTCTTCCAGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
21266530 GTGGAAGAAG
Statistics
Matches: 120, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
67 6 0.05
68 112 0.93
70 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (67 bp):
TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCACA
AA
Found at i:21266820 original size:132 final size:132
Alignment explanation
Indices: 21266583--21267768 Score: 2057
Period size: 132 Copynumber: 9.0 Consensus size: 132
21266573 AGGAGCAGAC
*
21266583 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCCAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
* **
21266648 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCTTGTGCTTATAGGGAACGG
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21266713 AT
131 AT
*
21266715 CGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
**
21266780 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGG
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21266845 AT
131 AT
*
21266847 CGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
* **
21266912 CCCTGTGCTTATAGAGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGG
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21266977 AT
131 AT
* *
21266979 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
* * *
21267044 CCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTATGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21267109 AT
131 AT
* *
21267111 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
21267176 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21267241 AT
131 AT
* *
21267243 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
21267308 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21267373 AT
131 AT
* *
21267375 CGAAGATAGCAGATCTGACATTCCTGTACTCACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
21267440 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGGTTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21267505 AT
131 AT
*
21267507 TGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
* * * ***
21267572 CCCTGTGCTTATAGGGAATAAGTTGAAAACATCAGATTTGGCATCCTTGTGCTTATAGGAAATGG
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21267637 AT
131 AT
*
21267639 CGAAAATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
* *
21267704 CCCTGTGCTTATAGGGAACAAGTTGAAAACATTAGATTTGGCATCCTTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21267769 GTTGAAAACA
Statistics
Matches: 1013, Mismatches: 41, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 1013 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (132 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
AT
Found at i:21267887 original size:132 final size:132
Alignment explanation
Indices: 21267698--21268025 Score: 430
Period size: 132 Copynumber: 2.5 Consensus size: 132
21267688 GATTTCAGCA
* * * * ** * *
21267698 TGGCATCCCTGTGCTTATAGGGAAC-AAGTTGAAAACATTAGATTTGGCA-TCCTTGTGCTTATA
1 TGGCATCCCTGTGCTTATAGGGAACGGA-TCGAAGATAGCAGATCTGACATTCC-TGTGCTTATA
*
21267761 GGGAACAAG-TTGAAAACAACAG-ATTTGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAA
64 GGGAACAAGATTGAAAACAACAGCA--TGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAA
21267824 CAGATT
127 CAGATT
* *
21267830 TGGCATCCCTGTGCTTATAGGGAACGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTATAGG
* * *** *
21267895 GAAGAAGATTGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
66 GAACAAGATTGAAAACAACAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGA
21267960 TT
131 TT
*
21267962 TGGCATCCCTGTGCTTATAGGGAACGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTATAG
1 TGGCATCCCTGTGCTTATAGGGAACGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTATAG
21268026 TGAAGCAGAT
Statistics
Matches: 173, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
132 159 0.92
133 13 0.08
134 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
TGGCATCCCTGTGCTTATAGGGAACGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTATAGG
GAACAAGATTGAAAACAACAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGA
TT
Found at i:21267931 original size:396 final size:393
Alignment explanation
Indices: 21266583--21267934 Score: 1947
Period size: 396 Copynumber: 3.4 Consensus size: 393
21266573 AGGAGCAGAC
** *
21266583 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCCAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA-CAG-TTGAAAATTTCAGCATGGCAT
* * * **
21266648 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCTTGTGCTTATAGGGAACGG
64 CCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
* *
21266713 ATCGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGC
129 ATTGAAGATAGCAGA-CTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGC
21266778 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAAC
193 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAAC
*
21266843 GGATCGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
258 GGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
*
21266908 GCATCCCTGTGCTTATAGAGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGA
323 GCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGA
*
21266973 AC-GGAT
388 ACAAG-T
* * *
21266979 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA-CAG-TTGAAAATTTCAGCATGGCAT
*
21267044 CCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTATGCTTATAGGGAACAA
64 CCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
* * *
21267109 ATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCGAAGATTTCAGCATGGC
129 ATTGAAGATAGCAGA-CTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGC
*
21267174 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC
193 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAAC
** * *
21267239 AAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCGAAGATTTCAGCATG
258 GGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
*
21267304 GCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGA
323 GCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGA
*
21267369 ACAAAT
388 ACAAGT
* * * *
21267375 CGAAGATAGCAGATCTGACATTCCTGTACTCACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA-CAGTTGAAA-ATTTCAGCATGGCAT
* * *
21267440 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGGTTTGGCATCCCTGTGCTTATAGGGAACAA
64 CCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
21267505 ATTGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGC
129 ATTGAAGATAGCAGA-CTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGC
* * * *
21267570 ATCCCTGTGCTTATAGGGAATAAGTTGAAAACATCAGATTTGGCATCCTTGTGCTTATAGGAAAT
193 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAAC
*
21267635 GGATCGAAAATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
258 GGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
* *
21267700 GCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATTAGATTTGGCATCCTTGTGCTTATAGGGA
323 GCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGA
21267765 ACAAGT
388 ACAAGT
* * * * * * * * * ***
21267771 TGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAG-ATTTGGCA
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAC-AGTTGAAAATTTCAGCA--TGGCA
* * * * * * * * *
21267835 TCCCTGTGCTTATAGGGAAC-GGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAG
63 TCCCTGTGCTTATAGGGAACAAG-TTGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC
** *
21267899 AAGATTGAAGATTTCAG-CATGACATCCCTGTGCTTA
127 AA-ATTGAAGATAGCAGAC-TGACATTCCTGTGCTTA
21267935 TAGGGAACAA
Statistics
Matches: 868, Mismatches: 80, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
394 1 0.00
395 9 0.01
396 846 0.97
397 12 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (393 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAACAGTTGAAAATTTCAGCATGGCATCC
CTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAAT
TGAAGATAGCAGACTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
CCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGGA
TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCA
TCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACA
AGT
Found at i:21267986 original size:264 final size:263
Alignment explanation
Indices: 21266583--21267934 Score: 1907
Period size: 264 Copynumber: 5.1 Consensus size: 263
21266573 AGGAGCAGAC
*
21266583 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCCAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGA-CTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
* *
21266648 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCTTGTGCTTATAGGGAAC-G
65 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
* * *
21266712 GATCGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGG
130 G-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGTTGAAA-ATTTCAGCATGG
*
21266777 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA
193 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
*
21266842 C-GGAT
258 CAAGAT
*
21266847 CGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGA-CTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
* *
21266912 CCCTGTGCTTATAGAGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAAC-G
65 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
* * *
21266976 GATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGG
130 G-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAG-TTGAAAATTTCAGCATGG
* *
21267041 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTATGCTTATAGGGAA
193 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
21267106 CAA-AT
258 CAAGAT
* *
21267111 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGA-CTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
21267176 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
65 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
* * * *
21267241 ATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCGAAGATTTCAGCATGGC
130 GTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAG-TTGAAAATTTCAGCATGGC
21267306 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC
194 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC
21267371 AA-AT
259 AAGAT
* *
21267375 CGAAGATAGCAGATCTGACATTCCTGTACTCACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGA-CTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
21267440 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGGTTTGGCATCCCTGTGCTTATAGGGAACAA
65 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
* * * *
21267505 ATTGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGC
130 GTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGTTGAAA-ATTTCAGCATGGC
* * *
21267570 ATCCCTGTGCTTATAGGGAATAAGTTGAAAACATCAGATTTGGCATCCTTGTGCTTATA-GGAA-
194 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC
*
21267633 ATGGAT
259 A-AGAT
*
21267639 CGAAAATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGA-CTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
* *
21267704 CCCTGTGCTTATAGGGAACAAGTTGAAAACATTAGATTTGGCATCCTTGTGCTTATAGGGAACAA
65 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
* * * * * * * * * ***
21267769 GTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAAACAACAG-ATTTG
130 GTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGC-AGTTGAAAATTTCAGCA--TG
* * * * * * * * *
21267832 GCATCCCTGTGCTTATAGGGAAC-GGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTG
192 GCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGG
*
21267896 AAGAAGAT
256 AACAAGAT
* ** *
21267904 TGAAGATTTCAG-CATGACATCCCTGTGCTTA
1 CGAAGATAGCAGAC-TGACATTCCTGTGCTTA
21267935 TAGGGAACAA
Statistics
Matches: 996, Mismatches: 79, Indels: 26
0.90 0.07 0.02
Matches are distributed among these distances:
262 2 0.00
263 13 0.01
264 964 0.97
265 16 0.02
266 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (263 bp):
CGAAGATAGCAGACTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
CCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAG
TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGTTGAAAATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
GAT
Found at i:21268028 original size:132 final size:132
Alignment explanation
Indices: 21267789--21268035 Score: 458
Period size: 132 Copynumber: 1.9 Consensus size: 132
21267779 ACAGATTTGG
21267789 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
*
21267854 CGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGAAGATTGAAGATTTCAGCAT
66 CGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGAAGATTGAAGATTTCAGCAT
21267919 GA
131 GA
*
21267921 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
* *
21267986 CGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGAAGCAGAT
66 CGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGAAGAT
21268036 CAAAGATAGC
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 111 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
CGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGAAGATTGAAGATTTCAGCAT
GA
Found at i:21268061 original size:45 final size:45
Alignment explanation
Indices: 21266576--21268045 Score: 327
Period size: 44 Copynumber: 33.4 Consensus size: 45
21266566 GTTACAGAGG
* * * *
21266576 AGCAGACCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* ** * * * *
21266621 AGCAGATCCAAGATTTC--AGCATGGCATCCCTGTGCTTATAGGGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
* * * * * * * *
21266665 A-CAAGTTGAAA-ACATCAGATTTGGCA-TCCTTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCC-TGTGCTTATAGTGA
* * * * *
21266709 A-CGGATCGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
** * * * *
21266753 AGCAGATCAAAGATTTC--AGCATGGCATCCCTGTGCTTATAGGGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
* * * * * * * * *
21266797 A-CAAGTTGAAA-ACATCAGATTTGGCATCCCTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* * * * *
21266841 A-CGGATCGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
** * * * *
21266885 AGCAGATCAAAGATTTC--AGCATGGCATCCCTGTGCTTATAGAGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
* * * * * * * * *
21266929 A-CAAGTTGAAA-ACATCAGATTTGGCATCCCTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* * * *
21266973 A-CGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* * ** * * * *
21267017 AGTAGATCGAAGATTTC--AGCATGGCATCCCTGTGCTTATAGGGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
* * * * * * * *
21267061 A-CAAGTTGAAA-ATAGCAGATTTGGCATCCCTATGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* * * * *
21267105 A-CAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* ** * * * *
21267149 AGCAGATCGAAGATTTC--AGCATGGCATCCCTGTGCTTATAGGGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
* * * * * * * *
21267193 A-CAAGTTGAAA-ACAGCAGATTTGGCATCCCTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* * * * *
21267237 A-CAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* ** * * * *
21267281 AGCAGATCGAAGATTTC--AGCATGGCATCCCTGTGCTTATAGGGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
* * * * * * * *
21267325 A-CAAGTTGAAA-ACAGCAGATTTGGCATCCCTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* * * * * *
21267369 A-CAAATCGAAGATAGCAGATCTGACATTCCTGTACTCACAGTGA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
** * * * *
21267413 AGCAGATCAAAGATTTC--AGCATGGCATCCCTGTGCTTATAGGGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
* * * * ** * * * *
21267457 A-CAAGTTGAAA-ACATCAGGTTTGGCATCCCTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* ** * *
21267501 A-CAAATTGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
** * * * *
21267545 AGCAGATCAAAGATTTC--AGCATGGCATCCCTGTGCTTATAGGGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
** * * * * * * *
21267589 ATAAGTTGAAA-ACATCAGATTTGGCA-TCCTTGTGCTTATAG-GA
1 AGCAGATCAAAGATAGCAAATCTGACATTCC-TGTGCTTATAGTGA
*** * *
21267632 AATGGATCGAAA-ATAGCAGATCTGACATTCCTGTGCTTACAGTGA
1 AGCAGATC-AAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
** * * * *
21267677 AGCAGATCAAAGATTTC--AGCATGGCATCCCTGTGCTTATAGGGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
* * * ** * * * *
21267721 A-CAAGTTGAAA-ACATTAGATTTGGCA-TCCTTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCC-TGTGCTTATAGTGA
* * * * * * * * *
21267765 A-CAAGTTGAAA-ACAACAGATTTGGCATCCCTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* * * * * * * * *
21267809 A-CAAGTTGAAA-ACAACAGATTTGGCATCCCTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* * * *
21267853 A-CGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* ** ** * * *
21267897 AGAAGATTGAAGATTTC--AGCATGACATCCCTGTGCTTATAGGGA
1 AGCAGATCAAAGATAGCAAATC-TGACATTCCTGTGCTTATAGTGA
* * * * * * * *
21267941 A-CAAGTTGAAA-ACAGCAGATTTGGCATCCCTGTGCTTATAGGGA
1 AGC-AGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
* *
21267985 A-CGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
1 AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
21268029 AGCAGATCAAAGATAGC
1 AGCAGATCAAAGATAGC
21268046 GGATATCGCC
Statistics
Matches: 1067, Mismatches: 292, Indels: 132
0.72 0.20 0.09
Matches are distributed among these distances:
43 100 0.09
44 827 0.78
45 140 0.13
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (45 bp):
AGCAGATCAAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGA
Found at i:21268426 original size:22 final size:22
Alignment explanation
Indices: 21268386--21268427 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
21268376 TGGCCACCCA
*
21268386 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
21268408 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
21268428 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:21268527 original size:25 final size:22
Alignment explanation
Indices: 21268493--21268583 Score: 71
Period size: 23 Copynumber: 4.0 Consensus size: 22
21268483 GGGGGGTGGG
*
21268493 TTTTTGGTTTTTTGGAGAAGGAT
1 TTTTTTGTTTTTTGGAGAAGG-T
*
21268516 TGTTCTTTG--TTTTGGAGGAGGT
1 T-TT-TTTGTTTTTTGGAGAAGGT
21268538 TTTTTTGTTTTTTTGGAAAGAAGGT
1 TTTTTTG-TTTTTTGG--AGAAGGT
*
21268563 TATTTTTGTTTCTTGGA-AAGG
1 T-TTTTTGTTTTTTGGAGAAGG
21268584 CTAGTTTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
20 4 0.07
21 2 0.04
22 6 0.11
23 19 0.34
24 2 0.04
25 17 0.30
26 6 0.11
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (22 bp):
TTTTTTGTTTTTTGGAGAAGGT
Found at i:21268551 original size:23 final size:23
Alignment explanation
Indices: 21268493--21268573 Score: 74
Period size: 23 Copynumber: 3.4 Consensus size: 23
21268483 GGGGGGTGGG
*
21268493 TTTTTGGTTTTTTGGAGAAGGATT
1 TTTTTGTTTTTTTGGAGAAGG-TT
* * * *
21268517 GTTCT-TTGTTTTGGAGGAGGTT
1 TTTTTGTTTTTTTGGAGAAGGTT
21268539 TTTTTGTTTTTTTGGAAAGAAGGTT
1 TTTTTGTTTTTTTGG--AGAAGGTT
21268564 ATTTTTGTTT
1 -TTTTTGTTT
21268574 CTTGGAAAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
22 5 0.11
23 20 0.45
24 3 0.07
25 7 0.16
26 9 0.20
ACGTcount: A:0.15, C:0.01, G:0.27, T:0.57
Consensus pattern (23 bp):
TTTTTGTTTTTTTGGAGAAGGTT
Found at i:21268573 original size:26 final size:24
Alignment explanation
Indices: 21268534--21268582 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
21268524 GTTTTGGAGG
*
21268534 AGGTTTTTTTGTTTTTTTGGAAAGA
1 AGGTTTTTTTG-TTTCTTGGAAAGA
21268559 AGGTTATTTTTGTTTCTTGGAAAG
1 AGGTT-TTTTTGTTTCTTGGAAAG
21268583 GCTAGTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.53
Consensus pattern (24 bp):
AGGTTTTTTTGTTTCTTGGAAAGA
Found at i:21268895 original size:3 final size:3
Alignment explanation
Indices: 21268881--21268966 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
21268871 GAGCTTTGTT
* *
21268881 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* *
21268925 TTCC TCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TT-A TTA T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
21268967 ATATGCCCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 6 0.09
3 52 0.79
4 8 0.12
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:21268919 original size:27 final size:27
Alignment explanation
Indices: 21268880--21268966 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
21268870 AGAGCTTTGT
21268880 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
* * *
21268907 TTTATATTATTATTATTATT-C-CTCA
1 TTTATATTATTATTATTTTTACTATTA
* * *
21268932 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
21268958 -TTATATTAT
1 TTTATATTAT
21268967 ATATGCCCTC
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 10 0.22
27 14 0.30
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:21270366 original size:13 final size:13
Alignment explanation
Indices: 21270348--21270374 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21270338 TTATGCATAT
21270348 ATCTTCAAATGAG
1 ATCTTCAAATGAG
21270361 ATCTTCAAATGAG
1 ATCTTCAAATGAG
21270374 A
1 A
21270375 AAATTTGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATCTTCAAATGAG
Found at i:21270815 original size:13 final size:13
Alignment explanation
Indices: 21270797--21270821 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21270787 TTTTGGAAAA
21270797 TTTTTATTTATAT
1 TTTTTATTTATAT
21270810 TTTTTATTTATA
1 TTTTTATTTATA
21270822 AAAATATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTATTTATAT
Found at i:21270846 original size:19 final size:17
Alignment explanation
Indices: 21270824--21270860 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
21270814 TATTTATAAA
21270824 AATATTTTAACATAATTTT
1 AATATTTTAA-AT-ATTTT
21270843 AATATTTTAAATATTTT
1 AATATTTTAAATATTTT
21270860 A
1 A
21270861 TTAAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 2 0.11
19 10 0.56
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
AATATTTTAAATATTTT
Found at i:21270857 original size:9 final size:9
Alignment explanation
Indices: 21270823--21270860 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
21270813 TTATTTATAA
21270823 AAATATTTT
1 AAATATTTT
21270832 AACATAATTTT
1 AA-AT-ATTTT
21270843 -AATATTTT
1 AAATATTTT
21270851 AAATATTTT
1 AAATATTTT
21270860 A
1 A
21270861 TTAAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 5 0.19
9 13 0.50
10 3 0.12
11 5 0.19
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (9 bp):
AAATATTTT
Found at i:21271464 original size:2 final size:2
Alignment explanation
Indices: 21271457--21271494 Score: 60
Period size: 2 Copynumber: 19.0 Consensus size: 2
21271447 TAATAATTGA
21271457 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
21271495 TTGATATCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 31 0.91
3 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:21274331 original size:44 final size:45
Alignment explanation
Indices: 21274278--21274370 Score: 172
Period size: 44 Copynumber: 2.1 Consensus size: 45
21274268 AAGAAATATG
21274278 TTAATTTTTTTCCTCAAGGAATTATGTT-AAAGTTGAAATGCTAT
1 TTAATTTTTTTCCTCAAGGAATTATGTTAAAAGTTGAAATGCTAT
21274322 TTAA-TTTTTTCCTCAAGGAATTATGTTAAAAGTTGAAATGCTAT
1 TTAATTTTTTTCCTCAAGGAATTATGTTAAAAGTTGAAATGCTAT
21274366 TTAAT
1 TTAAT
21274371 CAAAATTCAG
Statistics
Matches: 47, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
43 23 0.49
44 24 0.51
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (45 bp):
TTAATTTTTTTCCTCAAGGAATTATGTTAAAAGTTGAAATGCTAT
Found at i:21286379 original size:30 final size:30
Alignment explanation
Indices: 21286338--21286398 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
21286328 TCCTCAAAAC
21286338 TAAGATCTGAATAGCTTTTAACTCCCTCTT
1 TAAGATCTGAATAGCTTTTAACTCCCTCTT
*
21286368 TAAGTTCTGAATAGCTTTTAACTCCCTCTT
1 TAAGATCTGAATAGCTTTTAACTCCCTCTT
21286398 T
1 T
21286399 GTGGCTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.43
Consensus pattern (30 bp):
TAAGATCTGAATAGCTTTTAACTCCCTCTT
Found at i:21298898 original size:19 final size:19
Alignment explanation
Indices: 21298850--21298898 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
21298840 AGACATAAGA
*
21298850 TTTTAATATATAGTTGTGT
1 TTTTAATATACAGTTGTGT
21298869 TTATTATATATACATGTTGTG-
1 TT-TTA-ATATACA-GTTGTGT
21298890 TTTTAATAT
1 TTTTAATAT
21298899 GAAAAAGGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 6 0.23
20 6 0.23
21 8 0.31
22 6 0.23
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (19 bp):
TTTTAATATACAGTTGTGT
Found at i:21299915 original size:19 final size:19
Alignment explanation
Indices: 21299880--21299927 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
21299870 GGCAGTTTCT
21299880 CACCACCACC-ACCTCCAC
1 CACCACCACCTACCTCCAC
* *
21299898 CTCCACCACCTTCCTCCAC
1 CACCACCACCTACCTCCAC
21299917 CACCACCACCT
1 CACCACCACCT
21299928 CCTAATCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 9 0.35
19 17 0.65
ACGTcount: A:0.23, C:0.65, G:0.00, T:0.12
Consensus pattern (19 bp):
CACCACCACCTACCTCCAC
Found at i:21303359 original size:14 final size:15
Alignment explanation
Indices: 21303340--21303369 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
21303330 CTTTTTCCAA
21303340 AAGTAT-CCCTATAT
1 AAGTATCCCCTATAT
21303354 AAGTATCCCCTATAT
1 AAGTATCCCCTATAT
21303369 A
1 A
21303370 TTTATTACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (15 bp):
AAGTATCCCCTATAT
Found at i:21317553 original size:12 final size:12
Alignment explanation
Indices: 21317536--21317562 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
21317526 TTAATAGTTG
21317536 ATTGTCAAAATC
1 ATTGTCAAAATC
21317548 ATTGTCAAAATC
1 ATTGTCAAAATC
21317560 ATT
1 ATT
21317563 ACAATCTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (12 bp):
ATTGTCAAAATC
Found at i:21319384 original size:19 final size:18
Alignment explanation
Indices: 21319353--21319392 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
21319343 AGGGCCACCA
21319353 TGCAACAAGCAAAATCCT
1 TGCAACAAGCAAAATCCT
* *
21319371 TGCACACAATCAAAATGCT
1 TGCA-ACAAGCAAAATCCT
21319390 TGC
1 TGC
21319393 CTTCATGCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.40, C:0.28, G:0.12, T:0.20
Consensus pattern (18 bp):
TGCAACAAGCAAAATCCT
Found at i:21323059 original size:221 final size:221
Alignment explanation
Indices: 21322676--21323118 Score: 886
Period size: 221 Copynumber: 2.0 Consensus size: 221
21322666 AAAATTTTTA
21322676 ATAGTGAAAAAAAGTGTCAGTTTTAATAAATTCAAAATACACGAAAACCTGCAAATTTGCAGCTC
1 ATAGTGAAAAAAAGTGTCAGTTTTAATAAATTCAAAATACACGAAAACCTGCAAATTTGCAGCTC
21322741 ATGAATCAACCTAGTCGCGAAACCAAGAAAAGAAGCAGTTAAGGATGCATTGGCGCGATTTTTAA
66 ATGAATCAACCTAGTCGCGAAACCAAGAAAAGAAGCAGTTAAGGATGCATTGGCGCGATTTTTAA
21322806 AAATAAAACAAAATCGTAAACAATTAACACAGAATTAGGGCTGATTAGGATTAGAAACTCACTCG
131 AAATAAAACAAAATCGTAAACAATTAACACAGAATTAGGGCTGATTAGGATTAGAAACTCACTCG
21322871 ACGAGAAACTTTCTAACGAGGCTGTG
196 ACGAGAAACTTTCTAACGAGGCTGTG
21322897 ATAGTGAAAAAAAGTGTCAGTTTTAATAAATTCAAAATACACGAAAACCTGCAAATTTGCAGCTC
1 ATAGTGAAAAAAAGTGTCAGTTTTAATAAATTCAAAATACACGAAAACCTGCAAATTTGCAGCTC
21322962 ATGAATCAACCTAGTCGCGAAACCAAGAAAAGAAGCAGTTAAGGATGCATTGGCGCGATTTTTAA
66 ATGAATCAACCTAGTCGCGAAACCAAGAAAAGAAGCAGTTAAGGATGCATTGGCGCGATTTTTAA
21323027 AAATAAAACAAAATCGTAAACAATTAACACAGAATTAGGGCTGATTAGGATTAGAAACTCACTCG
131 AAATAAAACAAAATCGTAAACAATTAACACAGAATTAGGGCTGATTAGGATTAGAAACTCACTCG
21323092 ACGAGAAACTTTCTAACGAGGCTGTG
196 ACGAGAAACTTTCTAACGAGGCTGTG
21323118 A
1 A
21323119 GGGGAACCCT
Statistics
Matches: 222, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
221 222 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (221 bp):
ATAGTGAAAAAAAGTGTCAGTTTTAATAAATTCAAAATACACGAAAACCTGCAAATTTGCAGCTC
ATGAATCAACCTAGTCGCGAAACCAAGAAAAGAAGCAGTTAAGGATGCATTGGCGCGATTTTTAA
AAATAAAACAAAATCGTAAACAATTAACACAGAATTAGGGCTGATTAGGATTAGAAACTCACTCG
ACGAGAAACTTTCTAACGAGGCTGTG
Found at i:21332109 original size:66 final size:66
Alignment explanation
Indices: 21332003--21332128 Score: 207
Period size: 66 Copynumber: 1.9 Consensus size: 66
21331993 AGTTGGAAAC
*
21332003 GATGGCATTGTCTTTAAGAGTGGACATTTCATGACCGATAGTCTCTTGAGGCAAGGGAAACCAAA
1 GATGGCATTGTCTTTAAGAGTGGACAATTCATGACCGATAGTCTCTTGAGGCAAGGGAAACCAAA
21332068 G
66 G
* ** *
21332069 GATGGCATTGTTTTTAAGAGTGGACAATTCATGATGGATAGTTTCTTGAGGCAAGGGAAA
1 GATGGCATTGTCTTTAAGAGTGGACAATTCATGACCGATAGTCTCTTGAGGCAAGGGAAA
21332129 GCTTCTGTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.29
Consensus pattern (66 bp):
GATGGCATTGTCTTTAAGAGTGGACAATTCATGACCGATAGTCTCTTGAGGCAAGGGAAACCAAA
G
Found at i:21335025 original size:20 final size:20
Alignment explanation
Indices: 21334987--21335031 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
21334977 CATCTGCCAA
*
21334987 AATTATTTTTTTAGGTTTTT
1 AATTATTTTTTTAAGTTTTT
*
21335007 AATTTTTTTTTTAA-TTTTT
1 AATTATTTTTTTAAGTTTTT
21335026 AGATTA
1 A-ATTA
21335032 CTAAAGATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (20 bp):
AATTATTTTTTTAAGTTTTT
Found at i:21336750 original size:274 final size:264
Alignment explanation
Indices: 21336250--21336794 Score: 697
Period size: 274 Copynumber: 2.0 Consensus size: 264
21336240 GAAAAACATG
*
21336250 AATATTCATCATAATTTTATTAGATTCAAGATCGATGGAAACATGTGTCTTGCAAATAATGCTAC
1 AATATTCATCATAATTTTATTAGATCCAAGATCGATGGAAACATGTGTCTTGCAAATAATGCTAC
* * * * * *
21336315 GATACATACTATACTAAAAGATCAAAAATATTTTTCTCATTTGATAATGAGTGATGCTTATATTA
66 AACACATACTATACTAAAAAATCAAAAATATTTTTCTCATTTGACAAAGAGCGATGCTTATATTA
* * *
21336380 ATACCATATTAGGTAATTCAAAACTTATTGAAAGCTCTGAAAGAGTTGATATATTATTATTCAAA
131 ATACAATATCAGGTAATTCAAAACTTATTGAAAGCTCTGAAAGAGCTGATATATTATTATTCAAA
* * *
21336445 GGGATAGAAACTGTCACTGATGATGCTTTATTTTCTACTAAATCTAAAAGAAATTTATTAAGTTT
196 GGGATAAAAACTGTCACTGATGATACTTTATTTTCAACTAAATCTAAAAGAAATTTATTAAGTTT
21336510 TAAA
261 TAAA
* * *
21336514 GATATTCA-CTATAATTTTATTGGATCCAAGATCGATGGAAACATGTGTCTTGCAAATAGTGGC-
1 AATATTCATC-ATAATTTTATTAGATCCAAGATCGATGGAAACATGTGTCTTGCAAATAAT-GCT
* *
21336577 ACAACACATGCTATACTAAAATATAATAATATATATATATATATTTCTTCTCATTTGACAAAGAG
64 ACAACACATACTATACT---A-A-AA-AAT-CA-A-A-A-ATATTT-TTCTCATTTGACAAAGAG
*
21336642 CGATGCTTATATTAATACAATATCAGGTAATTC-AAA-TTATTGAAGGCTCTGAAAGAGCT-ATT
117 CGATGCTTATATTAATACAATATCAGGTAATTCAAAACTTATTGAAAGCTCTGAAAGAGCTGA-T
* * *
21336704 ATATTATTA-TCTAAAGGGATAAAAATTGTCATTGATGATACTTTATTTTCAATTAAATCTAAAA
181 ATATTATTATTC-AAAGGGATAAAAACTGTCACTGATGATACTTTATTTTCAACTAAATCTAAAA
*
21336768 GAAATTTATTGAGTTTTAAA
245 GAAATTTATTAAGTTTTAAA
21336788 AATATTC
1 AATATTC
21336795 GCCTTAATGG
Statistics
Matches: 241, Mismatches: 24, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
263 1 0.00
264 68 0.28
265 2 0.01
267 1 0.00
268 1 0.00
269 2 0.01
270 2 0.01
271 1 0.00
272 1 0.00
273 4 0.02
274 103 0.43
275 9 0.04
276 46 0.19
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (264 bp):
AATATTCATCATAATTTTATTAGATCCAAGATCGATGGAAACATGTGTCTTGCAAATAATGCTAC
AACACATACTATACTAAAAAATCAAAAATATTTTTCTCATTTGACAAAGAGCGATGCTTATATTA
ATACAATATCAGGTAATTCAAAACTTATTGAAAGCTCTGAAAGAGCTGATATATTATTATTCAAA
GGGATAAAAACTGTCACTGATGATACTTTATTTTCAACTAAATCTAAAAGAAATTTATTAAGTTT
TAAA
Found at i:21337365 original size:15 final size:15
Alignment explanation
Indices: 21337342--21337371 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
21337332 ATGTTTAGTT
*
21337342 ATTTGTTTTTATTTA
1 ATTTATTTTTATTTA
21337357 ATTTATTTTTATTTA
1 ATTTATTTTTATTTA
21337372 GTTTTTCACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (15 bp):
ATTTATTTTTATTTA
Found at i:21349278 original size:6 final size:6
Alignment explanation
Indices: 21349267--21349292 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
21349257 TGTCATCGAC
21349267 TCCCTT TCCCTT TCCCTT TCCCTT TC
1 TCCCTT TCCCTT TCCCTT TCCCTT TC
21349293 GTTCACCCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (6 bp):
TCCCTT
Found at i:21351898 original size:2 final size:2
Alignment explanation
Indices: 21351891--21351925 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
21351881 CTGCTCCTTG
*
21351891 TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
21351926 TTTAGAAACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:21356489 original size:18 final size:19
Alignment explanation
Indices: 21356458--21356509 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 19
21356448 ATTTGAGATT
*
21356458 AAAAAATAAAATATTAATA
1 AAAAAATAAAATATAAATA
*
21356477 AAAAAAT-ATATATAAATA
1 AAAAAATAAAATATAAATA
* **
21356495 TACTAATAAAATATA
1 AAAAAATAAAATATA
21356510 GAAAGTATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAAAATAAAATATAAATA
Found at i:21356528 original size:23 final size:24
Alignment explanation
Indices: 21356502--21356554 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
21356492 ATATACTAAT
21356502 AAAATATAGAAAGTATTAGAATAAAA
1 AAAATATAGAAAGTATTAGAAT--AA
* **
21356528 AAAATATTGAGGGTATTAGAATAA
1 AAAATATAGAAAGTATTAGAATAA
21356552 AAA
1 AAA
21356555 TAAAAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 5 0.21
26 19 0.79
ACGTcount: A:0.60, C:0.00, G:0.15, T:0.25
Consensus pattern (24 bp):
AAAATATAGAAAGTATTAGAATAA
Found at i:21358233 original size:29 final size:29
Alignment explanation
Indices: 21358200--21358255 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
21358190 ATAGAGAGAT
21358200 AGAATATGATATTTATTATTCTCTTATAC
1 AGAATATGATATTTATTATTCTCTTATAC
*
21358229 AGAATATGGTATTTATTATTCTCTTAT
1 AGAATATGATATTTATTATTCTCTTAT
21358256 CTGGCTTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (29 bp):
AGAATATGATATTTATTATTCTCTTATAC
Found at i:21362289 original size:24 final size:24
Alignment explanation
Indices: 21362257--21362304 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
21362247 TCATGGGGAA
21362257 GGAAGTAGGCAGATAATTTGGACT
1 GGAAGTAGGCAGATAATTTGGACT
21362281 GGAAGTAGGCAGATAATTTGGACT
1 GGAAGTAGGCAGATAATTTGGACT
21362305 AAGAAAGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.33, T:0.25
Consensus pattern (24 bp):
GGAAGTAGGCAGATAATTTGGACT
Found at i:21373194 original size:16 final size:16
Alignment explanation
Indices: 21373149--21373194 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
21373139 CAAAAGAGTT
*
21373149 AAATAATTATTTTACAA
1 AAATAATTA-TTTAAAA
21373166 AAAT-ATTGA-TTAAAA
1 AAATAATT-ATTTAAAA
21373181 AAATAATTATTTAA
1 AAATAATTATTTAA
21373195 CTCTATTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
15 10 0.40
16 10 0.40
17 5 0.20
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (16 bp):
AAATAATTATTTAAAA
Found at i:21373282 original size:9 final size:9
Alignment explanation
Indices: 21373260--21373324 Score: 59
Period size: 9 Copynumber: 7.7 Consensus size: 9
21373250 TGTCACATCA
21373260 ATAAATAATT
1 ATAAA-AATT
21373270 -TAAAAATT
1 ATAAAAATT
21373278 ATAAAAA-T
1 ATAAAAATT
** *
21373286 ATTCAAATG
1 ATAAAAATT
21373295 ATAAAAATT
1 ATAAAAATT
21373304 -T-AAAATT
1 ATAAAAATT
21373311 -TAAAAATT
1 ATAAAAATT
21373319 ATAAAA
1 ATAAAA
21373325 GTTAATAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
7 7 0.16
8 17 0.38
9 21 0.47
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:21373329 original size:16 final size:15
Alignment explanation
Indices: 21373296--21373336 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
21373286 ATTCAAATGA
*
21373296 TAAAAATTTAAAATT
1 TAAAAATTTAAAAGT
21373311 TAAAAATTATAAAAGT
1 TAAAAATT-TAAAAGT
21373327 TAATAAATTT
1 TAA-AAATTT
21373337 TTTAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 8 0.35
16 10 0.43
17 5 0.22
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (15 bp):
TAAAAATTTAAAAGT
Found at i:21375718 original size:33 final size:33
Alignment explanation
Indices: 21375676--21375742 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
21375666 TATCAAAAGC
21375676 TTCGTATTTCACTATGAACTAATGGGTAAACTG
1 TTCGTATTTCACTATGAACTAATGGGTAAACTG
21375709 TTCGTATTTCACTATGAACTAATGGGTAAACTG
1 TTCGTATTTCACTATGAACTAATGGGTAAACTG
21375742 T
1 T
21375743 CTGCAATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (33 bp):
TTCGTATTTCACTATGAACTAATGGGTAAACTG
Found at i:21383713 original size:3 final size:3
Alignment explanation
Indices: 21383705--21383731 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
21383695 AGAACCCAAA
21383705 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
21383732 CACTAGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:21387821 original size:31 final size:31
Alignment explanation
Indices: 21387783--21387847 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
21387773 TACAAAACAA
** *
21387783 TCATTGAACTATTCAAAATTTTTTATTTAAG
1 TCATTGAACTAGCCAAAAGTTTTTATTTAAG
*
21387814 TCATTGAACTAGCCGAAAGTTTTTATTTAAG
1 TCATTGAACTAGCCAAAAGTTTTTATTTAAG
21387845 TCA
1 TCA
21387848 CTAGGCTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (31 bp):
TCATTGAACTAGCCAAAAGTTTTTATTTAAG
Found at i:21393937 original size:2 final size:2
Alignment explanation
Indices: 21393883--21393922 Score: 62
Period size: 2 Copynumber: 19.5 Consensus size: 2
21393873 TGATTCCTCT
*
21393883 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GCA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA T
21393923 GTTTTTGTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 34 0.97
3 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:21395387 original size:2 final size:2
Alignment explanation
Indices: 21395380--21395417 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
21395370 AAATACATCA
21395380 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21395418 TTATGTAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.