Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 63 of 335
Found at i:22105893 original size:7 final size:6
Alignment explanation
Indices: 22105825--22105903 Score: 72
Period size: 6 Copynumber: 13.0 Consensus size: 6
22105815 TTGAATCCTC
* *
22105825 TTATTT TT-TTAT TTATTC TTATTT TTA-TT TTATTT TATTTTAT TTATTT
1 TTATTT TTATT-T TTATTT TTATTT TTATTT TTATTT T-TATT-T TTATTT
* * *
22105874 TTATTT TTCTTT TGATTT TTATTT TCATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT
22105904 CAATTTTATT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
5 7 0.12
6 42 0.71
7 8 0.14
8 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:22105897 original size:49 final size:49
Alignment explanation
Indices: 22105825--22105923 Score: 121
Period size: 49 Copynumber: 2.0 Consensus size: 49
22105815 TTGAATCCTC
* * * *
22105825 TTATTTTTTTATTTATTCTTATTTTTATTT-TATTTTATTTTATTTATTT
1 TTATTTTTTTATTGATTCTTATTTTCATTTCAATTTTATTAT-TTTATTT
*
22105874 TTATTTTTCTT-TTGATTTTTATTTTCATTTCAATTTTATTATTTTATTT
1 TTATTTTT-TTATTGATTCTTATTTTCATTTCAATTTTATTATTTTATTT
22105923 T
1 T
22105924 GAAAGACATA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
49 32 0.74
50 11 0.26
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (49 bp):
TTATTTTTTTATTGATTCTTATTTTCATTTCAATTTTATTATTTTATTT
Found at i:22108805 original size:13 final size:13
Alignment explanation
Indices: 22108789--22108821 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
22108779 TTTAATTAAA
*
22108789 TTAGTTAATTAGT
1 TTAGATAATTAGT
22108802 TTAGATAATTAGT
1 TTAGATAATTAGT
22108815 TTA-ATAA
1 TTAGATAA
22108822 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:22116262 original size:40 final size:37
Alignment explanation
Indices: 22116196--22116330 Score: 170
Period size: 35 Copynumber: 3.7 Consensus size: 37
22116186 CATGGAAAAG
22116196 TGTGAAATGTAGGTATGGTA-TT-ATCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACCGAGT
*
22116231 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATT-TC--ATCCATACCGAGT
** *
22116271 TAAGAAATGTAGGTATGGCATTTC--CCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACCGAGT
*
22116306 TGTAAAATGTAGGTATGGTATTTCA
1 TGTGAAATGTAGGTATGGTATTTCA
22116331 ATGAGGAAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
35 50 0.59
36 1 0.01
37 1 0.01
39 2 0.02
40 31 0.36
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTATTTCATCCATACCGAGT
Found at i:22116775 original size:13 final size:13
Alignment explanation
Indices: 22116751--22116803 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 13
22116741 TTAAATAAAC
*
22116751 AGTTAATAAAATT
1 AGTTGATAAAATT
* *
22116764 AGTTGATCAAATA
1 AGTTGATAAAATT
* *
22116777 AGTTAATAAAATC
1 AGTTGATAAAATT
*
22116790 AGTTGATTAAATT
1 AGTTGATAAAATT
22116803 A
1 A
22116804 TCCACACTAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (13 bp):
AGTTGATAAAATT
Found at i:22116780 original size:26 final size:26
Alignment explanation
Indices: 22116751--22116801 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22116741 TTAAATAAAC
*
22116751 AGTTAATAAAATTAGTTGATCAAATA
1 AGTTAATAAAATCAGTTGATCAAATA
*
22116777 AGTTAATAAAATCAGTTGATTAAAT
1 AGTTAATAAAATCAGTTGATCAAAT
22116802 TATCCACACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.49, C:0.04, G:0.12, T:0.35
Consensus pattern (26 bp):
AGTTAATAAAATCAGTTGATCAAATA
Found at i:22123819 original size:24 final size:25
Alignment explanation
Indices: 22123792--22123840 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
22123782 TTTTTTTTAT
*
22123792 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
22123816 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
22123841 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:22123833 original size:25 final size:23
Alignment explanation
Indices: 22123804--22123849 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
22123794 AATAAAAAAC
*
22123804 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
22123829 TTTAAAACATAAAAACAAATA
1 TTTAAAACATAAAAACAAATA
22123850 TTAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:22125740 original size:23 final size:21
Alignment explanation
Indices: 22125684--22125725 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22125674 ACATAAGTTA
* *
22125684 CTGAGACGACACACGAGGTGC
1 CTGATACGACACACGAGATGC
22125705 CTGATACGACACACGAGATGC
1 CTGATACGACACACGAGATGC
22125726 TTGAAATATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.29, G:0.29, T:0.12
Consensus pattern (21 bp):
CTGATACGACACACGAGATGC
Found at i:22134038 original size:19 final size:18
Alignment explanation
Indices: 22134001--22134053 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
22133991 ATCTGTTAGA
*
22134001 AGAAAATAAATGAATAATT
1 AGAAAATAAAT-AAAAATT
22134020 AGAAAATAAAATAAAAATT
1 AGAAAAT-AAATAAAAATT
*
22134039 -GAAATTGAAATAAAA
1 AGAAAAT-AAATAAAA
22134054 GTAACATGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 13 0.43
19 13 0.43
20 4 0.13
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.23
Consensus pattern (18 bp):
AGAAAATAAATAAAAATT
Found at i:22142987 original size:53 final size:53
Alignment explanation
Indices: 22142846--22142996 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
22142836 ACAAGTGTGC
* **
22142846 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
22142899 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
22142952 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
22142997 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:22151473 original size:13 final size:13
Alignment explanation
Indices: 22151452--22151495 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
22151442 AATTTGAGAG
22151452 TTATTAATATTTA
1 TTATTAATATTTA
* * *
22151465 TTTTTAATAGTTG
1 TTATTAATATTTA
22151478 TTATTAATATTTAA
1 TTATTAATATTT-A
22151492 TTAT
1 TTAT
22151496 GTTTAAATAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (13 bp):
TTATTAATATTTA
Found at i:22151501 original size:30 final size:28
Alignment explanation
Indices: 22151451--22151520 Score: 74
Period size: 30 Copynumber: 2.5 Consensus size: 28
22151441 AAATTTGAGA
**
22151451 GTTATTAATATTT-ATTTTT-AATAGTT
1 GTTATTAATATTTAATTTTTAAATAAAT
22151477 GTTATTAATATTTAATTATGTTTAAATAAAT
1 GTTATTAATATTTAA-T-T-TTTAAATAAAT
22151508 -TTATTAATATTTA
1 GTTATTAATATTTA
22151521 TTTAATTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 13 0.35
27 1 0.03
28 1 0.03
29 1 0.03
30 16 0.43
31 5 0.14
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (28 bp):
GTTATTAATATTTAATTTTTAAATAAAT
Found at i:22160263 original size:2 final size:2
Alignment explanation
Indices: 22160256--22160281 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
22160246 TAATTTCATA
22160256 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
22160282 GATTTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22161638 original size:20 final size:22
Alignment explanation
Indices: 22161609--22161654 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
22161599 AAATCAAAAC
*
22161609 AAATACTATT-C-AAAATTATT
1 AAATACTATTACAAAAATTATA
*
22161629 AAATATTATTACAAAAATTATA
1 AAATACTATTACAAAAATTATA
22161651 AAAT
1 AAAT
22161655 CTTGTGGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.41
21 1 0.05
22 12 0.55
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (22 bp):
AAATACTATTACAAAAATTATA
Found at i:22167110 original size:2 final size:2
Alignment explanation
Indices: 22167105--22167144 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
22167095 AGAATAGGAG
22167105 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22167145 TAAGTAACCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22177543 original size:44 final size:44
Alignment explanation
Indices: 22177485--22177573 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
22177475 TTTTATCTGG
22177485 TTTAAAAAATACATTTAAATATGTTAACTTATCAACTTTTGGTT
1 TTTAAAAAATACATTTAAATATGTTAACTTATCAACTTTTGGTT
22177529 TTTAAAAAATACATTTAAATATGTTAACTTATCAACTTTTGGTT
1 TTTAAAAAATACATTTAAATATGTTAACTTATCAACTTTTGGTT
22177573 T
1 T
22177574 ATCTAATTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (44 bp):
TTTAAAAAATACATTTAAATATGTTAACTTATCAACTTTTGGTT
Found at i:22178988 original size:14 final size:15
Alignment explanation
Indices: 22178969--22179002 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
22178959 AATTTAGAAC
22178969 ATATTAAAATATAT-
1 ATATTAAAATATATA
22178983 ATATT-AAATATATA
1 ATATTAAAATATATA
22178997 ATATTA
1 ATATTA
22179003 CTCTAATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATATTAAAATATATA
Found at i:22179080 original size:25 final size:25
Alignment explanation
Indices: 22179047--22179097 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
22179037 CTATATAAAG
*
22179047 AAATTTTAATAAATAAAAAT-ATATA
1 AAATATTAA-AAATAAAAATGATATA
* *
22179072 AAATATTAAATATTAAAATGATATA
1 AAATATTAAAAATAAAAATGATATA
22179097 A
1 A
22179098 TATAAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (25 bp):
AAATATTAAAAATAAAAATGATATA
Found at i:22182389 original size:21 final size:20
Alignment explanation
Indices: 22182363--22182408 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
22182353 TGAAAGTTTT
* *
22182363 ACATTTGTGTTGCATTTGAAG
1 ACATTTATGATGCATTTG-AG
*
22182384 ACATTTATGATGTATTTGAG
1 ACATTTATGATGCATTTGAG
22182404 ACATT
1 ACATT
22182409 GTTTGTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (20 bp):
ACATTTATGATGCATTTGAG
Found at i:22198898 original size:24 final size:27
Alignment explanation
Indices: 22198877--22198956 Score: 89
Period size: 26 Copynumber: 3.1 Consensus size: 27
22198867 AAAAAATATA
22198877 TATATATAT-ATTTAAAATAATAAAAT
1 TATATATATCATTTAAAATAATAAAAT
*
22198903 TATATATATCATTTAAAATTTATAAAGA-
1 TATATATATCATTTAAAA-TAATAAA-AT
*
22198931 TATA-A-ATTA-TTAAAATAATAAAAT
1 TATATATATCATTTAAAATAATAAAAT
22198955 TA
1 TA
22198957 CATTTATATT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
23 1 0.02
24 8 0.17
25 6 0.13
26 12 0.26
27 9 0.19
28 10 0.21
29 1 0.02
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (27 bp):
TATATATATCATTTAAAATAATAAAAT
Found at i:22206499 original size:21 final size:21
Alignment explanation
Indices: 22206473--22206557 Score: 62
Period size: 21 Copynumber: 4.0 Consensus size: 21
22206463 TGATCAGTAT
*
22206473 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
22206494 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
22206515 ACGACACACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
** *
22206537 TACTTCACATAAAGTGCCTAA
1 -ACGACACACAAAGTGCCTAA
22206558 TCAGTAAAGC
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
21 34 0.68
22 3 0.06
23 13 0.26
ACGTcount: A:0.38, C:0.26, G:0.20, T:0.16
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:22206545 original size:23 final size:21
Alignment explanation
Indices: 22206471--22206534 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
22206461 CCTGATCAGT
** * *
22206471 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
22206492 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
22206513 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
22206534 A
1 A
22206535 AATACTTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:22206686 original size:23 final size:23
Alignment explanation
Indices: 22206643--22206687 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
22206633 TTAATAGGGT
*
22206643 ATTTCAATTCTCAATTCACTTTC
1 ATTTCAATTCTAAATTCACTTTC
*
22206666 ATTTCCATTCTAAGATT-ACTTT
1 ATTTCAATTCTAA-ATTCACTTT
22206688 TCAATTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.27, C:0.22, G:0.02, T:0.49
Consensus pattern (23 bp):
ATTTCAATTCTAAATTCACTTTC
Found at i:22213929 original size:2 final size:2
Alignment explanation
Indices: 22213922--22213949 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22213912 TGACTTTTAA
22213922 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22213950 TAAAACAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22220153 original size:24 final size:24
Alignment explanation
Indices: 22220054--22220137 Score: 114
Period size: 24 Copynumber: 3.5 Consensus size: 24
22220044 GATTCAACTC
* * * * *
22220054 CGCACACATAGTGCTAAATAATTC
1 CGCACACATAGTGCCATACAAATA
*
22220078 CGCACACATAGTGCCATACATATA
1 CGCACACATAGTGCCATACAAATA
22220102 CGCACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
22220126 CGCACACATAGT
1 CGCACACATAGT
22220138 TCCACTCAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.38, C:0.29, G:0.13, T:0.20
Consensus pattern (24 bp):
CGCACACATAGTGCCATACAAATA
Found at i:22223407 original size:38 final size:38
Alignment explanation
Indices: 22223351--22223430 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
22223341 GATGTGTATT
* * *
22223351 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
22223389 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
22223427 CGGG
1 CGGG
22223431 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:22223554 original size:43 final size:43
Alignment explanation
Indices: 22223402--22223588 Score: 265
Period size: 42 Copynumber: 4.4 Consensus size: 43
22223392 GATAAATCCC
* * *
22223402 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
22223443 GCAGGCTTAGTG-CGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
22223485 GCA-GCTTAGTGCCGGTGATGTGTATTCGAGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
22223527 GCAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
22223570 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
22223589 AATGATATGT
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 3 0.02
41 21 0.16
42 54 0.42
43 51 0.40
ACGTcount: A:0.14, C:0.23, G:0.33, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:22223981 original size:45 final size:44
Alignment explanation
Indices: 22223907--22224030 Score: 112
Period size: 45 Copynumber: 2.8 Consensus size: 44
22223897 ACTTGATTAT
* * ** *
22223907 TCGGGCCTTTGAGCTTAGCAAACTATAATGTCGGTGAGA-T-ACTAA
1 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA-ACTGA-T-A
*
22223952 TCGGGCCTTCGAGCCTAGCAGGCTGTAATGCCGGTGAACTGATA
1 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAACTGATA
* * *
22223996 TCGGGCC-TCGAGCCTAACAGGCGA-AAAGCCGGTGA
1 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
22224031 TTTGAGAAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
42 10 0.15
43 14 0.21
44 9 0.13
45 33 0.49
46 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (44 bp):
TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAACTGATA
Found at i:22226539 original size:35 final size:35
Alignment explanation
Indices: 22226485--22226819 Score: 368
Period size: 35 Copynumber: 9.6 Consensus size: 35
22226475 TCCTCATTGA
* *
22226485 AATACCATACCTACGTTTCACAACTCTGTATGGAA
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* * ** *
22226520 AACACCATACCTACTTTTCA-TGCTCGGTATGGAA
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* ** * * *
22226554 AATATCATACCTATATTTCATAACTTGGTATGGAC
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* * * * * *
22226589 GATACCATACCTACGTATCATAGCTCAGTATGGAC
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* * * *
22226624 GATGCCATACCTACGTTTCATAGCTCGGTATGGA-
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* *
22226658 AATACCATACCTACGTTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* *
22226693 AATACCATACCTATGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
22226728 AATACCATACCTACGTTTCACAACTCGGTATGGAT
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* ** *
22226763 GATACCATACCTACGTTTCACAACTCAATATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
*
22226798 AATACCATACCTACATTTCACA
1 AATACCATACCTACGTTTCACA
22226820 CTTTGCCATG
Statistics
Matches: 258, Mismatches: 40, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
34 55 0.21
35 203 0.79
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCGGTATGGAT
Found at i:22226667 original size:104 final size:104
Alignment explanation
Indices: 22226485--22226819 Score: 375
Period size: 104 Copynumber: 3.2 Consensus size: 104
22226475 TCCTCATTGA
* * *
22226485 AATACCATACCTACGTTTCACAACTCTGTATGGAAAACACCATACCTACTTTTCAT-GCTCGGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGAAAATACCATACCTACGTTTCATAGCTCGGTA
* * * **
22226549 TGGAAAATATCATACCTATATTTCATAACTTGGTATGGAC
66 TGG-AAATACCATACCTACATTTCACAACTCAGTATGGAC
* * * * ** *
22226589 GATACCATACCTACGTATCATAGCTCAGTATGGACGATGCCATACCTACGTTTCATAGCTCGGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGAAAATACCATACCTACGTTTCATAGCTCGGTA
* **
22226654 TGGAAATACCATACCTACGTTTCACAACTCAGTATGGTT
66 TGGAAATACCATACCTACATTTCACAACTCAGTATGGAC
* * ** * *
22226693 AATACCATACCTATGTTTCACAACTCGGTATGGTTAATACCATACCTACGTTTCACAACTCGGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGAAAATACCATACCTACGTTTCATAGCTCGGTA
* * * **
22226758 TGGATGATACCATACCTACGTTTCACAACTCAATATGGTT
66 TGGA-AATACCATACCTACATTTCACAACTCAGTATGGAC
*
22226798 AATACCATACCTACATTTCACA
1 AATACCATACCTACGTTTCACA
22226820 CTTTGCCATG
Statistics
Matches: 195, Mismatches: 34, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
104 131 0.67
105 64 0.33
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (104 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAAAATACCATACCTACGTTTCATAGCTCGGTA
TGGAAATACCATACCTACATTTCACAACTCAGTATGGAC
Found at i:22226739 original size:139 final size:140
Alignment explanation
Indices: 22226486--22226819 Score: 402
Period size: 139 Copynumber: 2.4 Consensus size: 140
22226476 CCTCATTGAA
* * * ** *
22226486 ATACCATACCTACGTTTCACAACTCTGTATGGAAAACACCATACCTACTTTTCA-TGCTCGGTAT
1 ATACCATACCTACGTTTCACAACTCAGTATGGAAAATACCATACCTACATTTCACAACTCAGTAT
* * * * * *
22226550 GGAAAATATCATACCTATATTTCATAACTTGGTATGGACGATACCATACCTACGTATCATAGCTC
66 GGAAAATACCATACCTATATTTCACAACTCGGTATGGACAATACCATACCTACGTATCACAACTC
22226615 AGTATGGACG
131 AGTATGGACG
* * * * *
22226625 ATGCCATACCTACGTTTCATAGCTCGGTATGG-AAATACCATACCTACGTTTCACAACTCAGTAT
1 ATACCATACCTACGTTTCACAACTCAGTATGGAAAATACCATACCTACATTTCACAACTCAGTAT
** * ** *
22226689 GGTTAATACCATACCTATGTTTCACAACTCGGTATGGTTAATACCATACCTACGTTTCACAACTC
66 GGAAAATACCATACCTATATTTCACAACTCGGTATGGACAATACCATACCTACGTATCACAACTC
* *
22226754 GGTATGGATG
131 AGTATGGACG
* **
22226764 ATACCATACCTACGTTTCACAACTCAATATGGTTAATACCATACCTACATTTCACA
1 ATACCATACCTACGTTTCACAACTCAGTATGGAAAATACCATACCTACATTTCACA
22226820 CTTTGCCATG
Statistics
Matches: 163, Mismatches: 30, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
138 19 0.12
139 123 0.75
140 21 0.13
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (140 bp):
ATACCATACCTACGTTTCACAACTCAGTATGGAAAATACCATACCTACATTTCACAACTCAGTAT
GGAAAATACCATACCTATATTTCACAACTCGGTATGGACAATACCATACCTACGTATCACAACTC
AGTATGGACG
Found at i:22229102 original size:46 final size:45
Alignment explanation
Indices: 22229008--22229138 Score: 174
Period size: 46 Copynumber: 2.9 Consensus size: 45
22228998 TATTGTCTGT
* *
22229008 CATGTGCATGATAGAAATGGA-TTTGTTTGTGTTAAAGTGTATGA
1 CATGTGCATGATAGAAATGGATTTTTTTTGTATTAAAGTGTATGA
* * *
22229052 CATGTGCGTGATAGACATGGATTTTTTATTGTATTAAAGTGTATGG
1 CATGTGCATGATAGAAATGGATTTTTT-TTGTATTAAAGTGTATGA
*
22229098 CATGTGCATGATAGAAATTGATTTTTTTTTTGTATTAAAGT
1 CATGTGCATGATAGAAATGGA--TTTTTTTTGTATTAAAGT
22229139 ATTTGGTTAT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
44 19 0.25
45 4 0.05
46 34 0.45
47 12 0.16
48 6 0.08
ACGTcount: A:0.28, C:0.05, G:0.24, T:0.43
Consensus pattern (45 bp):
CATGTGCATGATAGAAATGGATTTTTTTTGTATTAAAGTGTATGA
Found at i:22253596 original size:28 final size:29
Alignment explanation
Indices: 22253536--22253602 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
22253526 TTAAAATATA
* * * *
22253536 AAAAATTCAAAAAAGTATAAAATTTGTTTT
1 AAAAATT-AAAAAAATATAAAATGTATTAT
22253566 AAAAATTAAAAAAATATAAAA-GTATTAT
1 AAAAATTAAAAAAATATAAAATGTATTAT
22253594 AAAAATTAA
1 AAAAATTAA
22253603 TTAATTGCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 13 0.39
29 13 0.39
30 7 0.21
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (29 bp):
AAAAATTAAAAAAATATAAAATGTATTAT
Found at i:22261113 original size:6 final size:6
Alignment explanation
Indices: 22261102--22261132 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
22261092 AGTTTGTTAA
22261102 GGCTTG GGCTTG GGCTTG GGCTTG GGCTTG G
1 GGCTTG GGCTTG GGCTTG GGCTTG GGCTTG G
22261133 TAAGTAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.52, T:0.32
Consensus pattern (6 bp):
GGCTTG
Found at i:22283709 original size:48 final size:46
Alignment explanation
Indices: 22283613--22283709 Score: 140
Period size: 48 Copynumber: 2.1 Consensus size: 46
22283603 ACAGGACAAA
* *
22283613 AATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGAGACAGG
* *
22283659 AATGAGCCATGTAAGCCCATAATATATATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGCCCAT-AT-CAGATATATGGCATTGGAGACAGG
22283707 AAT
1 AAT
22283710 AATTCATGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 19 0.42
47 2 0.04
48 24 0.53
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (46 bp):
AATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGAGACAGG
Found at i:22287266 original size:13 final size:13
Alignment explanation
Indices: 22287248--22287272 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22287238 TAAGATAAAT
22287248 TTGCTTGTGTTTG
1 TTGCTTGTGTTTG
22287261 TTGCTTGTGTTT
1 TTGCTTGTGTTT
22287273 TAGACCCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.28, T:0.64
Consensus pattern (13 bp):
TTGCTTGTGTTTG
Found at i:22292704 original size:3 final size:3
Alignment explanation
Indices: 22292689--22292745 Score: 62
Period size: 3 Copynumber: 18.7 Consensus size: 3
22292679 TGCAGCAGCA
* *
22292689 AAG AGAG AA- AAG AAG AAG AAG AAG AAG AAG AAG AAG GAG AAG GAG
1 AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
22292734 GAG AAAG AAG AA
1 AAG -AAG AAG AA
22292746 AAAATGTTAG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 2 0.04
3 40 0.85
4 5 0.11
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:22293824 original size:11 final size:11
Alignment explanation
Indices: 22293808--22293843 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
22293798 GAGAGTAAGA
*
22293808 AATTTTAATGT
1 AATTTTAATAT
22293819 AATTTTAATAT
1 AATTTTAATAT
*
22293830 AATTTTGATAT
1 AATTTTAATAT
22293841 AAT
1 AAT
22293844 GTAAATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (11 bp):
AATTTTAATAT
Found at i:22295485 original size:12 final size:12
Alignment explanation
Indices: 22295447--22295513 Score: 57
Period size: 12 Copynumber: 5.6 Consensus size: 12
22295437 TGCACCAACT
22295447 CCGGAGCCAGAG
1 CCGGAGCCAGAG
*
22295459 CCAGAGCCAGAG
1 CCGGAGCCAGAG
* *
22295471 CCGGAGGCAGTG
1 CCGGAGCCAGAG
*
22295483 CCGGA-CTTAGAG
1 CCGGAGC-CAGAG
*
22295495 -CGGCGGCCAGAG
1 CCGG-AGCCAGAG
22295507 CCGGAGC
1 CCGGAGC
22295514 TACACTCAGG
Statistics
Matches: 41, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
11 3 0.07
12 34 0.83
13 4 0.10
ACGTcount: A:0.22, C:0.31, G:0.42, T:0.04
Consensus pattern (12 bp):
CCGGAGCCAGAG
Found at i:22308782 original size:10 final size:10
Alignment explanation
Indices: 22308760--22308795 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
22308750 TTCTTTTGTA
22308760 TATTTTCATTC
1 TATTTT-ATTC
22308771 TATTTTATTC
1 TATTTTATTC
22308781 TATTTTATT-
1 TATTTTATTC
22308790 TATTTT
1 TATTTT
22308796 CTTTTTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.24
10 13 0.52
11 6 0.24
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.72
Consensus pattern (10 bp):
TATTTTATTC
Found at i:22315697 original size:64 final size:64
Alignment explanation
Indices: 22315596--22315723 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
22315586 TCATTCATAA
* *
22315596 CACATCTAGTTAGGAGTATTTGATTCATTTCGATCATAGCATCCTAATTATTTGATATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * * *
22315660 CACATTTAGTTAGGAGCATTTGGTTCATTTCGATCATAGTATCTTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
22315724 AGATATATGA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.40
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:22315929 original size:44 final size:45
Alignment explanation
Indices: 22315832--22316154 Score: 134
Period size: 45 Copynumber: 7.2 Consensus size: 45
22315822 TCGAAAATGA
22315832 CAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAG
1 CAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAG
* * *
22315877 CAAGTCTTATTTTCCTGAAGTTGC-A-GGAAGCAGACTGAAAGTTA-
1 CAAGTCTTATCTCCCTGAAGTTGCAATGG-AGCAGACTG-AAGATAG
* * * * * * *
22315921 C-AGATCTTATCTCCATGTA-TCGGCTATGGAGCAAATCAGAA-ATGG
1 CAAG-TCTTATCTCCCTGAAGT-TGCAATGGAGCAGA-CTGAAGATAG
* * * * * * ** **
22315966 CGAGTCTTATCTCCATGTA-TCGGCTATGGAGCAGATTTTAGCCA-
1 CAAGTCTTATCTCCCTGAAGT-TGCAATGGAGCAGACTGAAGATAG
* * * * * *
22316010 CTAGTCTTATCTTCCTGAAGTTGCAGT-AAGCAAACTGAAAATTTA-
1 CAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGA--TAG
** * * * * *
22316055 C-AGATCTTATCTCTATGTA-TCGGCTATGGAGTAGA-TCGAAAAT-G
1 CAAG-TCTTATCTCCCTGAAGT-TGCAATGGAGCAGACT-GAAGATAG
*
22316099 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
1 -CAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAG
22316145 CAAGTCTTAT
1 CAAGTCTTAT
22316155 AGGAAGCAGA
Statistics
Matches: 202, Mismatches: 53, Indels: 46
0.67 0.18 0.15
Matches are distributed among these distances:
43 12 0.06
44 48 0.24
45 122 0.60
46 20 0.10
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (45 bp):
CAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAG
Found at i:22316130 original size:134 final size:133
Alignment explanation
Indices: 22315820--22316154 Score: 424
Period size: 134 Copynumber: 2.5 Consensus size: 133
22315810 CAACGGAATT
*
22315820 GATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAGTCTT
1 GATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGC-ATGGAGCAGACTGAAGACAGCAAGTCTT
* *
22315885 ATTTTCCTGAAGTTGCAGGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGGCTATGG
65 ATCTTCCTGAAGTTGCAGGAAGCAAACTGAAAGTTACAGATCTTATCTCCATGTATCGGCTATGG
22315950 AGCA
130 AGCA
* * * * * * * ** * *
22315954 AATC-AGAAATGGCGAGTCTTATCTCCATGTA-TCGGCTATGGAGCAGATTTTAGCCA-CTAGTC
1 GATCGA-AAATGACAAGTCTTATCTCCCTGAAGT-TGC-ATGGAGCAGACTGAAGACAGCAAGTC
* * *
22316016 TTATCTTCCTGAAGTTGCAGTAAGCAAACTGAAAATTTACAGATCTTATCTCTATGTATCGGCTA
63 TTATCTTCCTGAAGTTGCAGGAAGCAAACTG-AAAGTTACAGATCTTATCTCCATGTATCGGCTA
*
22316081 TGGAGTA
127 TGGAGCA
*
22316088 GATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTT
1 GATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCA-TGGAGCAGACTGAAGACAGCAAGTCTT
22316153 AT
65 AT
22316155 AGGAAGCAGA
Statistics
Matches: 163, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
133 36 0.22
134 116 0.71
135 11 0.07
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (133 bp):
GATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCATGGAGCAGACTGAAGACAGCAAGTCTTA
TCTTCCTGAAGTTGCAGGAAGCAAACTGAAAGTTACAGATCTTATCTCCATGTATCGGCTATGGA
GCA
Found at i:22316359 original size:254 final size:254
Alignment explanation
Indices: 22315901--22316408 Score: 899
Period size: 254 Copynumber: 2.0 Consensus size: 254
22315891 CTGAAGTTGC
* *
22315901 AGGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAAATCAGAAATGG
1 AGGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGACTATGGAGCAAATCAGAAATGA
*
22315966 CGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTGAAGT
66 CGAGTCTTATCTCCATCTATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTGAAGT
* * * *
22316031 TGCAGTAAGCAAACTGAAAATTTACAGATCTTATCTCTATGTATCGGCTATGGAGTAGATCGAAA
131 TGCAGGAAGCAAACTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAGAAA
* *
22316096 ATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTTAT
196 ATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTAT
* * *
22316155 AGGAAGCAGACTGAAAGTTACAGATCTTATTTCCATGTATCGACTATGGAGCAGATTAGAAATGA
1 AGGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGACTATGGAGCAAATCAGAAATGA
*
22316220 CGAGTCTTATCTCCATCTATCGGTTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTGAAGT
66 CGAGTCTTATCTCCATCTATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTGAAGT
22316285 TGCAGGAAGCAAACTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAGAAA
131 TGCAGGAAGCAAACTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAGAAA
22316350 ATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTAT
196 ATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTAT
22316409 CTTCCTGAAG
Statistics
Matches: 241, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
254 241 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (254 bp):
AGGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGACTATGGAGCAAATCAGAAATGA
CGAGTCTTATCTCCATCTATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTGAAGT
TGCAGGAAGCAAACTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAGAAA
ATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTAT
Found at i:22316384 original size:45 final size:45
Alignment explanation
Indices: 22316266--22316439 Score: 126
Period size: 45 Copynumber: 3.9 Consensus size: 45
22316256 TTTAGCCACT
* * * **
22316266 AGTCTTATCTTCCTGAAGTTGCAG-GAAGCAAACTGAAAATTTAC-
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAA-CAACA
* * * *
22316310 AGATCTTATCTCCATGTA-TCGGCTA-TGGAGCAGA-TAGAAAATAACA
1 AG-TCTTATCTCCCTGAAGT-TGC-AGTGGAGCAGACT-GAAAACAACA
* *
22316356 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACAACA
* * * *
22316401 AGTCTTATCTTCCTGAAGTTACAG-GAAGCAGACTAAAAA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAA
22316440 TTACAGATCT
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
44 16 0.16
45 71 0.69
46 16 0.16
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (45 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACAACA
Found at i:22316409 original size:90 final size:88
Alignment explanation
Indices: 22316214--22316410 Score: 193
Period size: 90 Copynumber: 2.2 Consensus size: 88
22316204 AGCAGATTAG
* *** * * * *
22316214 AAATG-ACGAGTCTTATCTCCATCTATCGGTTATGGAGCAGATTTTAGCCACTAGTCTTATCTTC
1 AAATGCAC-AGTCTTATCTCCATCTATCGGCTATGGAGCAGATGAAAACAACAAGTCTTATCTCC
22316278 CTGAAGTTGCAGGAAGCAAACTGA
65 CTGAAGTTGCAGGAAGCAAACTGA
** * *
22316302 AAATTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAGAAAATAACAAGTCTTATCTC
1 AAATGCACAG-TCTTATCTCCATCTATCGGCTATGGAGCAGAT-GAAAACAACAAGTCTTATCTC
* *
22316367 CCTGAAGTTGCAGTGGAGCAGACTGA
64 CCTGAAGTTGCAG-GAAGCAAACTGA
22316393 AGACA-GCA-AGTCTTATCT
1 A-A-ATGCACAGTCTTATCT
22316411 TCCTGAAGTT
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
88 6 0.07
89 32 0.36
90 34 0.39
91 13 0.15
92 2 0.02
93 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (88 bp):
AAATGCACAGTCTTATCTCCATCTATCGGCTATGGAGCAGATGAAAACAACAAGTCTTATCTCCC
TGAAGTTGCAGGAAGCAAACTGA
Found at i:22316444 original size:134 final size:133
Alignment explanation
Indices: 22316155--22316632 Score: 513
Period size: 134 Copynumber: 3.6 Consensus size: 133
22316145 CAAGTCTTAT
* * * *
22316155 AGGAAGCAGACTGAAAGTTACAGATCTTATTTCCATGTATCGACTATGGAGCAGATTAGAAATGA
1 AGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTAGAAATGA
* ** * *
22316220 CGAGTCTTATCTCCATCT-ATCGGTT--A-TGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTG
66 CAAGTCTTATCTCC--CTGA--GGTTGCAGTGGAGCAGATTGAAGACACAAGTCTTATCTTCCTG
22316281 AAGTTGC
127 AAGTTGC
* *
22316288 AGGAAGCAAACTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGA-TAGAAAAT
1 AGGAAGCAGACT-AAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTAG-AAAT
* * *
22316352 AACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTATCTTCCTGA
64 GACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGACA-CAAGTCTTATCTTCCTGA
*
22316417 AGTTAC
128 AGTTGC
** ***
22316423 AGGAAGCAGACTAAAAATTACAGATCTTA-CTCCATGTATCGGCTATGGAGCAGATT-TTAGCCA
1 AGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTAGAAATGA
* * *** * * * * *
22316486 CCAGCCTTATCTGTTTGAGGTAGCAAG-AGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAAG
66 CAAGTCTTATCTCCCTGAGGTTGC-AGTGGAGCAGATTGAAGACACAAGTCTTATCTTCCTGAAG
22316550 TTGC
130 TTGC
* * * * *
22316554 AAGAAGCAGACTGAAAAGTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGATTAGAAATGG
1 AGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTAGAAATGA
22316619 CAAGTCTTATCTCC
66 CAAGTCTTATCTCC
22316633 ATGTATCGGC
Statistics
Matches: 286, Mismatches: 48, Indels: 22
0.80 0.13 0.06
Matches are distributed among these distances:
131 51 0.18
132 60 0.21
133 54 0.19
134 88 0.31
135 33 0.12
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (133 bp):
AGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTAGAAATGA
CAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGACACAAGTCTTATCTTCCTGAAGT
TGC
Found at i:22316959 original size:17 final size:17
Alignment explanation
Indices: 22316937--22316972 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
22316927 TAAACCGACC
22316937 ACTAACTCCATCACCCT
1 ACTAACTCCATCACCCT
22316954 ACTAACTCCATCACCCT
1 ACTAACTCCATCACCCT
22316971 AC
1 AC
22316973 CTTCCACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.47, G:0.00, T:0.22
Consensus pattern (17 bp):
ACTAACTCCATCACCCT
Found at i:22317541 original size:20 final size:19
Alignment explanation
Indices: 22317507--22317544 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
22317497 ATGAACATTT
22317507 TTTAAATATTATATTATTA
1 TTTAAATATTATATTATTA
*
22317526 TTTATATATATATATTATT
1 TTTAAATAT-TATATTATT
22317545 TATATTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTAAATATTATATTATTA
Found at i:22317558 original size:17 final size:17
Alignment explanation
Indices: 22317516--22317549 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
22317506 TTTTAAATAT
22317516 TATAT-TATTATTTATA
1 TATATATATTATTTATA
22317532 TATATATATTATTTATA
1 TATATATATTATTTATA
22317549 T
1 T
22317550 TAAGCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATATATTATTTATA
Found at i:22319557 original size:43 final size:43
Alignment explanation
Indices: 22319510--22319597 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
22319500 ATTTTAAGAA
22319510 AATAGCTTATTAAATTTTATAATATTTCATTTAAAAAAGAAAC
1 AATAGCTTATTAAATTTTATAATATTTCATTTAAAAAAGAAAC
22319553 AATAGCTTATTAAATTTTATAATATTTCATTTAAAAAAGAAAC
1 AATAGCTTATTAAATTTTATAATATTTCATTTAAAAAAGAAAC
22319596 AA
1 AA
22319598 CTTTTCACAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (43 bp):
AATAGCTTATTAAATTTTATAATATTTCATTTAAAAAAGAAAC
Found at i:22323384 original size:13 final size:13
Alignment explanation
Indices: 22323368--22323410 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
22323358 TTTTTCTTAT
*
22323368 TTTATTTTGTTTA
1 TTTATTTTATTTA
22323381 TTTATTTTATTTA
1 TTTATTTTATTTA
* *
22323394 TTTTTTGTTATTAA
1 TTTATT-TTATTTA
22323408 TTT
1 TTT
22323411 TAAAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.77
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:22323405 original size:10 final size:9
Alignment explanation
Indices: 22323364--22323397 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
22323354 ATATTTTTTC
22323364 TTATTTTAT
1 TTATTTTAT
22323373 TT-TGTTTAT
1 TTAT-TTTAT
22323382 TTATTTTAT
1 TTATTTTAT
22323391 TTATTTT
1 TTATTTT
22323398 TTGTTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (9 bp):
TTATTTTAT
Found at i:22323475 original size:11 final size:11
Alignment explanation
Indices: 22323459--22323499 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
22323449 AATTTTAAAT
22323459 ATTATTTTTAA
1 ATTATTTTTAA
22323470 ATTATTTTTAA
1 ATTATTTTTAA
*
22323481 A--ATTTTGAA
1 ATTATTTTTAA
22323490 TATTATTTTT
1 -ATTATTTTT
22323500 TAAAATTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
9 7 0.28
10 1 0.04
11 12 0.48
12 5 0.20
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (11 bp):
ATTATTTTTAA
Found at i:22323476 original size:33 final size:34
Alignment explanation
Indices: 22323439--22323714 Score: 158
Period size: 36 Copynumber: 7.8 Consensus size: 34
22323429 TTATAATATA
22323439 TATTTTTAACAATTTTAAATATTA-TTTTT-AAAT
1 TATTTTTAA-AATTTTAAATATTATTTTTTAAAAT
*
22323472 TATTTTTAAAATTTTGAATATTATTTTTTAAAAT
1 TATTTTTAAAATTTTAAATATTATTTTTTAAAAT
* * *
22323506 TATGTCTCATAAAA-TTTAAA-AATATATTTTTGAAAT
1 TAT-T-T-TTAAAATTTTAAATATTAT-TTTTTAAAAT
* *
22323542 TAATTTTTCTAAATTTTAAATTTTAAATATATTTTTAAAAAT
1 T-ATTTTT-AAAATTTTAAA---T--AT-TATTTTTTAAAAT
*** * **
22323584 ATATTTTTAAACAAAATAAA-A-TAATTTCAAAAAT
1 -TATTTTTAAA-ATTTTAAATATTATTTTTTAAAAT
* *
22323618 ATATATTT-AAATTTTAAATA-TATATTTTTGAAAT
1 -TATTTTTAAAATTTTAAATATTAT-TTTTTAAAAT
* *
22323652 TATTTCTTATAAATTTTAAA-AATATATTTTTGAAAT
1 TATTT-TTA-AAATTTTAAATATTAT-TTTTTAAAAT
22323688 TATTTTT-AAATTTTAAATATTATTTTT
1 TATTTTTAAAATTTTAAATATTATTTTT
22323715 AATAATATTT
Statistics
Matches: 192, Mismatches: 26, Indels: 50
0.72 0.10 0.19
Matches are distributed among these distances:
32 18 0.09
33 37 0.19
34 39 0.20
35 12 0.06
36 53 0.28
37 7 0.04
41 2 0.01
42 20 0.10
43 4 0.02
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.53
Consensus pattern (34 bp):
TATTTTTAAAATTTTAAATATTATTTTTTAAAAT
Found at i:22323496 original size:21 final size:21
Alignment explanation
Indices: 22323462--22323506 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
22323452 TTTAAATATT
*
22323462 ATTTTTAAATTA-TTTTTAAA
1 ATTTTGAAATTATTTTTTAAA
22323482 ATTTTGAATATTATTTTTTAAA
1 ATTTTGAA-ATTATTTTTTAAA
22323504 ATT
1 ATT
22323507 ATGTCTCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.32
21 4 0.18
22 11 0.50
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTTTGAAATTATTTTTTAAA
Found at i:22323508 original size:13 final size:12
Alignment explanation
Indices: 22323451--22323484 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
22323441 TTTTTAACAA
22323451 TTTTAAATATTAT
1 TTTTAAA-ATTAT
22323464 TTTT-AAATTAT
1 TTTTAAAATTAT
22323475 TTTTAAAATT
1 TTTTAAAATT
22323485 TTGAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 9 0.45
12 7 0.35
13 4 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTTAAAATTAT
Found at i:22323583 original size:14 final size:14
Alignment explanation
Indices: 22323566--22323594 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22323556 TTTAAATTTT
22323566 AAATATATTTTTAA
1 AAATATATTTTTAA
22323580 AAATATATTTTTAA
1 AAATATATTTTTAA
22323594 A
1 A
22323595 CAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATATATTTTTAA
Found at i:22323630 original size:21 final size:22
Alignment explanation
Indices: 22323606--22323652 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
22323596 AAAATAAAAT
22323606 AATTTCAAAAATATATATTT-A
1 AATTTCAAAAATATATATTTGA
* * *
22323627 AATTTTAAATATATATTTTTGA
1 AATTTCAAAAATATATATTTGA
22323649 AATT
1 AATT
22323653 ATTTCTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
AATTTCAAAAATATATATTTGA
Found at i:22323827 original size:25 final size:26
Alignment explanation
Indices: 22323799--22323848 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
22323789 AAAAATAATT
*
22323799 AAAAATCATA-ATTTCAAAAATTTAG
1 AAAAATAATATATTTCAAAAATTTAG
**
22323824 AAAAATAATATATTTTTAAAATTTA
1 AAAAATAATATATTTCAAAAATTTA
22323849 AAATTTAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (26 bp):
AAAAATAATATATTTCAAAAATTTAG
Found at i:22323850 original size:7 final size:7
Alignment explanation
Indices: 22323838--22323886 Score: 62
Period size: 7 Copynumber: 6.6 Consensus size: 7
22323828 ATAATATATT
22323838 TTTAAAA
1 TTTAAAA
22323845 TTTAAAA
1 TTTAAAA
22323852 TTTAGAAA
1 TTTA-AAA
*
22323860 TATAATATA
1 TTTAA-A-A
22323869 TTTAAAA
1 TTTAAAA
22323876 TTTAAAA
1 TTTAAAA
22323883 TTTA
1 TTTA
22323887 GAAAAATTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
7 24 0.65
8 8 0.22
9 5 0.14
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (7 bp):
TTTAAAA
Found at i:22323873 original size:31 final size:32
Alignment explanation
Indices: 22323815--22323893 Score: 133
Period size: 31 Copynumber: 2.5 Consensus size: 32
22323805 CATAATTTCA
22323815 AAAATTTAGAAAAATAATATATTTTTAAAATTT
1 AAAATTTAGAAAAATAATATA-TTTTAAAATTT
*
22323848 AAAATTTAGAAATATAATATA-TTTAAAATTT
1 AAAATTTAGAAAAATAATATATTTTAAAATTT
22323879 AAAATTTAGAAAAAT
1 AAAATTTAGAAAAAT
22323894 TAATTTCAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 24 0.55
33 20 0.45
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (32 bp):
AAAATTTAGAAAAATAATATATTTTAAAATTT
Found at i:22323922 original size:36 final size:33
Alignment explanation
Indices: 22323875--22323998 Score: 135
Period size: 36 Copynumber: 3.6 Consensus size: 33
22323865 TATATTTAAA
22323875 ATTTAAAATTTAGAAAAATTAATTTCAAAAATATAT
1 ATTTAAAATTTA-AAAAA-TAATTT-AAAAATATAT
* *
22323911 TTTTAAAATTTATAAGACATAATTTTAAAAA-ATAAT
1 ATTTAAAATTTA-AA-AAATAA-TTTAAAAATAT-AT
*
22323947 ATTCAAAATTTAAAAAATAATTTAAAAATA-AT
1 ATTTAAAATTTAAAAAATAATTTAAAAATATAT
22323979 ATTTAAAATTTTAAAAAATA
1 ATTTAAAA-TTTAAAAAATA
22323999 TATATTATAA
Statistics
Matches: 76, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
32 9 0.12
33 19 0.25
34 6 0.08
35 4 0.05
36 33 0.43
37 5 0.07
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (33 bp):
ATTTAAAATTTAAAAAATAATTTAAAAATATAT
Found at i:22323960 original size:21 final size:20
Alignment explanation
Indices: 22323934--22323975 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
22323924 AAGACATAAT
*
22323934 TTTAAAAAATAATATTCAAAA
1 TTTAAAAAATAAT-TTAAAAA
22323955 TTTAAAAAATAATTTAAAAA
1 TTTAAAAAATAATTTAAAAA
22323975 T
1 T
22323976 AATATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
TTTAAAAAATAATTTAAAAA
Found at i:22324054 original size:9 final size:9
Alignment explanation
Indices: 22324040--22324073 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
22324030 TTAATAACAA
22324040 AAAATAAAT
1 AAAATAAAT
22324049 AAAATAAAT
1 AAAATAAAT
22324058 AAACA-AAAT
1 AAA-ATAAAT
22324067 AAAATAA
1 AAAATAA
22324074 GAAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAATAAAT
Found at i:22324059 original size:13 final size:13
Alignment explanation
Indices: 22324026--22324069 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
22324016 CAAATATTTT
*
22324026 TAAATTAATAACAA
1 TAAATAAATAA-AA
*
22324040 AAAATAAATAAAA
1 TAAATAAATAAAA
*
22324053 TAAATAAACAAAA
1 TAAATAAATAAAA
22324066 TAAA
1 TAAA
22324070 ATAAGAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAATAAATAAAA
Found at i:22326048 original size:31 final size:30
Alignment explanation
Indices: 22326008--22326067 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 30
22325998 TTTAATTTTA
*
22326008 TTTATTTTAATAATATATTATCCTATAAAC
1 TTTATTTTAATAATATATTATCCCATAAAC
*
22326038 TTTATATTTAATATTATATTATCCCATAAA
1 TTTAT-TTTAATAATATATTATCCCATAAA
22326068 AATTTTACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (30 bp):
TTTATTTTAATAATATATTATCCCATAAAC
Found at i:22332512 original size:18 final size:17
Alignment explanation
Indices: 22332481--22332516 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
22332471 AAAACTAATA
*
22332481 TTTTTAAAATATTCATT
1 TTTTTAAAAAATTCATT
22332498 TTTTTATAAAAATTCATT
1 TTTTTA-AAAAATTCATT
22332516 T
1 T
22332517 AAAATTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTTAAAAAATTCATT
Found at i:22343164 original size:10 final size:9
Alignment explanation
Indices: 22343128--22343178 Score: 50
Period size: 10 Copynumber: 5.6 Consensus size: 9
22343118 AAATTAGAAA
22343128 AAAAATTATT
1 AAAAATTA-T
**
22343138 AAATTTTAT
1 AAAAATTAT
*
22343147 TAAAATTAT
1 AAAAATTAT
22343156 AAAATATTAT
1 AAAA-ATTAT
22343166 AAAAA-TAT
1 AAAAATTAT
22343174 AAAAA
1 AAAAA
22343179 AATTTGTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
8 8 0.24
9 11 0.32
10 15 0.44
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAAAATTAT
Found at i:22343168 original size:18 final size:19
Alignment explanation
Indices: 22343129--22343236 Score: 71
Period size: 19 Copynumber: 5.6 Consensus size: 19
22343119 AATTAGAAAA
* *
22343129 AAAATTATTAAATTTTATT
1 AAAATTATAAAATATTATT
22343148 AAAATTATAAAATATTA-T
1 AAAATTATAAAATATTATT
* * *
22343166 AAAAATATAAAAAAATTTGTTT
1 AAAATTAT-AAAATA-TT-ATT
22343188 AAAATTA-AAAATA-TATT
1 AAAATTATAAAATATTATT
* * *
22343205 AGAATTCTTAAAAATATT-TA
1 AAAATT-AT-AAAATATTATT
22343225 AAAATTATAAAA
1 AAAATTATAAAA
22343237 ATAAATTTAA
Statistics
Matches: 68, Mismatches: 13, Indels: 17
0.69 0.13 0.17
Matches are distributed among these distances:
17 7 0.10
18 13 0.19
19 21 0.31
20 19 0.28
21 1 0.01
22 7 0.10
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (19 bp):
AAAATTATAAAATATTATT
Found at i:22343170 original size:39 final size:42
Alignment explanation
Indices: 22343103--22343201 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 42
22343093 ATACAAAACA
* * **
22343103 ATTAAAATCTATAAAAAATTAGAAAAAAA-ATTATTAAATTT-T
1 ATTAAAAT-TATAAAATATTA-AAAAAAATATAAAAAAATTTGT
*
22343145 ATTAAAATTATAAAATATT-ATAAAAATATAAAAAAATTTGT
1 ATTAAAATTATAAAATATTAAAAAAAATATAAAAAAATTTGT
22343186 -TTAAAATTA-AAAATAT
1 ATTAAAATTATAAAATAT
22343202 ATTAGAATTC
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 13 0.26
40 18 0.36
41 11 0.22
42 8 0.16
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (42 bp):
ATTAAAATTATAAAATATTAAAAAAAATATAAAAAAATTTGT
Found at i:22343230 original size:20 final size:19
Alignment explanation
Indices: 22343192--22343256 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
22343182 TTGTTTAAAA
*
22343192 TTAAAAATATATTAGAATT
1 TTAAAAATATATTAAAATT
22343211 CTTAAAAATAT-TTAAAAATT
1 -TTAAAAATATATT-AAAATT
* * *
22343231 ATAAAAATAAATTTAAAATA
1 TTAAAAATATA-TTAAAATT
22343251 TTAAAA
1 TTAAAA
22343257 CTGAAATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
19 10 0.27
20 25 0.68
21 2 0.05
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
TTAAAAATATATTAAAATT
Found at i:22343237 original size:19 final size:19
Alignment explanation
Indices: 22343148--22343253 Score: 67
Period size: 21 Copynumber: 5.4 Consensus size: 19
22343138 AAATTTTATT
22343148 AAAATTAT-AAAATATTATA
1 AAAATTATAAAAATATT-TA
* * *
22343167 AAAATATAAAAAAATTTGTTT
1 AAAAT-TATAAAAATAT-TTA
22343188 AAAA-T-TAAAAATATATT-
1 AAAATTATAAAAATAT-TTA
* *
22343205 AGAATTCTTAAAAATATTTA
1 AAAATT-ATAAAAATATTTA
22343225 AAAATTATAAAAATAAATTTA
1 AAAATTATAAAAAT--ATTTA
22343246 AAATATTA
1 AAA-ATTA
22343254 AAACTGAAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
17 3 0.04
18 10 0.15
19 15 0.22
20 16 0.24
21 19 0.28
22 5 0.07
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAATTATAAAAATATTTA
Found at i:22343427 original size:19 final size:19
Alignment explanation
Indices: 22343405--22343453 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
22343395 TTTAATTTTT
*
22343405 TTATCAAACTAAAATTTCA
1 TTATCAAACTAAAAATTCA
*
22343424 TTATCCAAA-AAAAAATTCA
1 TTAT-CAAACTAAAAATTCA
*
22343443 TTATCTAACTA
1 TTATCAAACTA
22343454 TTAGCACATG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
18 3 0.12
19 17 0.71
20 4 0.17
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (19 bp):
TTATCAAACTAAAAATTCA
Found at i:22343866 original size:10 final size:9
Alignment explanation
Indices: 22343763--22343912 Score: 72
Period size: 9 Copynumber: 15.7 Consensus size: 9
22343753 TTTAATAATT
*
22343763 TTTTTATAG
1 TTTTTATAA
*
22343772 TTTTTATGA
1 TTTTTATAA
*
22343781 TTTTTACAGA
1 TTTTTATA-A
22343791 TTTTTAATACA
1 TTTTT-ATA-A
22343802 TTTTTATAAA
1 TTTTTAT-AA
*
22343812 ATTTTA-AA
1 TTTTTATAA
*
22343820 TATTTTAAATA
1 T-TTTTATA-A
*
22343831 TGTTTTATTA
1 T-TTTTATAA
22343841 TTTTTATAAA
1 TTTTTAT-AA
***
22343851 AAATTATAA
1 TTTTTATAA
*
22343860 TTTATTA-CA
1 TTT-TTATAA
22343869 TTTATTATAA
1 TTT-TTATAA
*
22343879 TATTTATAA
1 TTTTTATAA
22343888 GTTTTTATTAA
1 -TTTTTA-TAA
22343899 TTTTTAT-A
1 TTTTTATAA
22343907 TTTTTA
1 TTTTTA
22343913 ATATTCAATA
Statistics
Matches: 108, Mismatches: 22, Indels: 23
0.71 0.14 0.15
Matches are distributed among these distances:
8 9 0.08
9 41 0.38
10 39 0.36
11 19 0.18
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:22343911 original size:8 final size:9
Alignment explanation
Indices: 22343876--22343959 Score: 50
Period size: 9 Copynumber: 9.2 Consensus size: 9
22343866 ACATTTATTA
*
22343876 TAATATTTA
1 TAATATTTT
*
22343885 TAA-GTTTT
1 TAATATTTT
*
22343893 TATTAATTTT
1 TAAT-ATTTT
22343903 T-ATATTTT
1 TAATATTTT
22343911 TAATA--TT
1 TAATATTTT
* *
22343918 CAATAATTT
1 TAATATTTT
22343927 TAATATTTTTT
1 TAATA--TTTT
22343938 TAATAATTTT
1 TAAT-ATTTT
22343948 CTAATATTTT
1 -TAATATTTT
22343958 TA
1 TA
22343960 TGGGAAAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
7 6 0.10
8 11 0.19
9 15 0.26
10 14 0.24
11 11 0.19
12 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (9 bp):
TAATATTTT
Found at i:22343940 original size:11 final size:11
Alignment explanation
Indices: 22343924--22343958 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
22343914 TATTCAATAA
22343924 TTTTAATATTT
1 TTTTAATATTT
*
22343935 TTTTAATAATT
1 TTTTAATATTT
*
22343946 TTCTAATATTT
1 TTTTAATATTT
22343957 TT
1 TT
22343959 ATGGGAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTTAATATTT
Found at i:22343944 original size:20 final size:22
Alignment explanation
Indices: 22343919--22343958 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
22343909 TTTAATATTC
22343919 AATAA-TTT-TAATATTTTTTT
1 AATAATTTTCTAATATTTTTTT
22343939 AATAATTTTCTAATATTTTT
1 AATAATTTTCTAATATTTTT
22343959 ATGGGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 10 0.56
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (22 bp):
AATAATTTTCTAATATTTTTTT
Found at i:22351848 original size:51 final size:51
Alignment explanation
Indices: 22351793--22351895 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
22351783 AATCTTATAC
22351793 ATGACATATCAACTCATATGTTCAATTATTCAAACTTACCAAAACAACCAT
1 ATGACATATCAACTCATATGTTCAATTATTCAAACTTACCAAAACAACCAT
22351844 ATGACATATCAACTCATATGTTCAATTATTCAAACTTACCAAAACAACCAT
1 ATGACATATCAACTCATATGTTCAATTATTCAAACTTACCAAAACAACCAT
22351895 A
1 A
22351896 CATATATGGG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.29
Consensus pattern (51 bp):
ATGACATATCAACTCATATGTTCAATTATTCAAACTTACCAAAACAACCAT
Found at i:22352436 original size:2 final size:2
Alignment explanation
Indices: 22352429--22352456 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22352419 TGTAACAATT
22352429 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22352457 CTTTCCATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22352755 original size:24 final size:24
Alignment explanation
Indices: 22352709--22352756 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
22352699 TTCGGGCTGT
* *
22352709 ATAACGGGAAGCTCATAAGAGCCA
1 ATAACGGGAAGCTCAGAAAAGCCA
* *
22352733 ATAACGGGTAGCTCCGAAAAGCCA
1 ATAACGGGAAGCTCAGAAAAGCCA
22352757 TTAATCGAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.40, C:0.23, G:0.25, T:0.12
Consensus pattern (24 bp):
ATAACGGGAAGCTCAGAAAAGCCA
Found at i:22352841 original size:25 final size:26
Alignment explanation
Indices: 22352812--22352861 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22352802 AGCCAATATT
*
22352812 AAGAAGCTC-CAGAGAGCCGTTAATA
1 AAGAAGCTCACAAAGAGCCGTTAATA
*
22352837 AAGAAGCTCACAAAGAGCCTTTAAT
1 AAGAAGCTCACAAAGAGCCGTTAAT
22352862 TGGGAAGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (26 bp):
AAGAAGCTCACAAAGAGCCGTTAATA
Found at i:22355961 original size:19 final size:19
Alignment explanation
Indices: 22355916--22355961 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
22355906 ATTAACACAC
*
22355916 AATTAATTAAAATATAACT
1 AATTAATAAAAATATAACT
*
22355935 -ATTCATAAAAATCATAA-T
1 AATTAATAAAAAT-ATAACT
22355953 AATTAATAA
1 AATTAATAA
22355962 TTAAACAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
AATTAATAAAAATATAACT
Found at i:22356188 original size:10 final size:10
Alignment explanation
Indices: 22356175--22356209 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
22356165 AAGCTCGGTT
22356175 GAGCTCAAAC
1 GAGCTCAAAC
*
22356185 GAGCTGAAAC
1 GAGCTCAAAC
*
22356195 GAGCTCAAAT
1 GAGCTCAAAC
22356205 GAGCT
1 GAGCT
22356210 GAGTTGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.37, C:0.23, G:0.26, T:0.14
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:22356218 original size:20 final size:20
Alignment explanation
Indices: 22356172--22356219 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
22356162 AGTAAGCTCG
22356172 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
*** *
22356192 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
22356212 GTTGAGCT
1 GTTGAGCT
22356220 GGACGGAGCT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:22357871 original size:24 final size:24
Alignment explanation
Indices: 22357836--22357921 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
22357826 CTTGTTCACA
*
22357836 TTCTTTTTCTTTCTCAAACTCTTT
1 TTCTTTTTCTTTCTCAATCTCTTT
* * * *
22357860 TTCGTTCTCTTTTTCAATCTCATT
1 TTCTTTTTCTTTCTCAATCTCTTT
**
22357884 TTCTTTTTCACTCTCAATCTCTTT
1 TTCTTTTTCTTTCTCAATCTCTTT
22357908 TTCTTTTTCTTTCT
1 TTCTTTTTCTTTCT
22357922 TTTCTCGATT
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.10, C:0.26, G:0.01, T:0.63
Consensus pattern (24 bp):
TTCTTTTTCTTTCTCAATCTCTTT
Found at i:22357890 original size:18 final size:18
Alignment explanation
Indices: 22357865--22357910 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
22357855 TCTTTTTCGT
*
22357865 TCTCTTTTTCAATCTCAT
1 TCTCTTTTTCAATCTCAA
* *
22357883 TTTCTTTTTCACTCTCAA
1 TCTCTTTTTCAATCTCAA
22357901 TCTCTTTTTC
1 TCTCTTTTTC
22357911 TTTTTCTTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.28, G:0.00, T:0.59
Consensus pattern (18 bp):
TCTCTTTTTCAATCTCAA
Found at i:22357947 original size:42 final size:41
Alignment explanation
Indices: 22357913--22357997 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 41
22357903 TCTTTTTCTT
*
22357913 TTTCTTTCTTTTCTCGATTTCATTCAAGATTCTCTCATTTTC
1 TTTCTTTCTTCTCTCGATTTCATTCAAGATTCTCT-ATTTTC
* * * *
22357955 TTTGTTTCTTCTCTTGATTTCATTCAAAATCCTCTCATTTTC
1 TTTCTTTCTTCTCTCGATTTCATTCAAGATTCTCT-ATTTTC
22357997 T
1 T
22357998 CTCATAATCT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (41 bp):
TTTCTTTCTTCTCTCGATTTCATTCAAGATTCTCTATTTTC
Found at i:22360458 original size:10 final size:10
Alignment explanation
Indices: 22360445--22360479 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
22360435 AAGCTCGGTT
22360445 GAGCTCAAAC
1 GAGCTCAAAC
*
22360455 GAGCTGAAAC
1 GAGCTCAAAC
*
22360465 GAGCTCAAAT
1 GAGCTCAAAC
22360475 GAGCT
1 GAGCT
22360480 GAGTTGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.37, C:0.23, G:0.26, T:0.14
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:22360488 original size:20 final size:20
Alignment explanation
Indices: 22360442--22360489 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
22360432 AGTAAGCTCG
22360442 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
*** *
22360462 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
22360482 GTTGAGCT
1 GTTGAGCT
22360490 GGACGGAGCT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:22365909 original size:23 final size:23
Alignment explanation
Indices: 22365883--22365934 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
22365873 GTTAAATTTT
22365883 TCTTAAATATTATCACAAAATAA
1 TCTTAAATATTATCACAAAATAA
*
22365906 TCTTAAATATTATCACTAAATAA
1 TCTTAAATATTATCACAAAATAA
22365929 T-TTAAA
1 TCTTAAA
22365935 AATCAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 5 0.18
23 23 0.82
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (23 bp):
TCTTAAATATTATCACAAAATAA
Found at i:22369872 original size:20 final size:22
Alignment explanation
Indices: 22369832--22369873 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
22369822 ATTATTAATA
*
22369832 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
22369854 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
22369874 CATTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:22369914 original size:15 final size:16
Alignment explanation
Indices: 22369886--22369916 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
22369876 TTTTTATTTT
22369886 AATAATAGATTTTAAA
1 AATAATAGATTTTAAA
22369902 AATAATA-ATTTTAAA
1 AATAATAGATTTTAAA
22369917 TAACATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AATAATAGATTTTAAA
Found at i:22369973 original size:15 final size:15
Alignment explanation
Indices: 22369939--22370010 Score: 67
Period size: 15 Copynumber: 4.7 Consensus size: 15
22369929 CGATTATTGA
*
22369939 AAATA-TTTAATAGT
1 AAATATTTTAATAAT
22369953 -AATATTTTAATAAT
1 AAATATTTTAATAAT
*
22369967 AAATATTTATTACAATTAT
1 AAATA-TT-TT--AATAAT
*
22369986 AAATATATTAATAAT
1 AAATATTTTAATAAT
22370001 AAATATTTTA
1 AAATATTTTA
22370011 TAGTATAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
13 4 0.09
14 8 0.17
15 18 0.38
16 2 0.04
17 4 0.09
18 1 0.02
19 10 0.21
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:22373481 original size:5 final size:5
Alignment explanation
Indices: 22373449--22373480 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
22373439 GAACGCTTGG
22373449 AAATA AAATA AAATA AAATA AAATA AAA-A AAA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAA
22373481 AGAAGAGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (5 bp):
AAATA
Found at i:22379240 original size:16 final size:16
Alignment explanation
Indices: 22379219--22379249 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22379209 GATATTTTAA
22379219 TATATTATATTAATAT
1 TATATTATATTAATAT
*
22379235 TATATTATGTTAATA
1 TATATTATATTAATA
22379250 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:22379346 original size:12 final size:12
Alignment explanation
Indices: 22379329--22379359 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
22379319 GAAGCAGGGG
22379329 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
22379341 AGAAAAAGGGAA
1 AGAAAAAGAGAA
22379353 AGAAAAA
1 AGAAAAA
22379360 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:22384761 original size:30 final size:30
Alignment explanation
Indices: 22384725--22384784 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
22384715 AATTGTCAGA
22384725 GTAGTCCGAGCAATCATCATCCCAATCATC
1 GTAGTCCGAGCAATCATCATCCCAATCATC
22384755 GTAGTCCGAGCAATCATCATCCCAATCATC
1 GTAGTCCGAGCAATCATCATCCCAATCATC
22384785 CATCTCATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.23
Consensus pattern (30 bp):
GTAGTCCGAGCAATCATCATCCCAATCATC
Found at i:22386793 original size:17 final size:17
Alignment explanation
Indices: 22386771--22386809 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
22386761 GAAATATAAT
*
22386771 ACTCACAAGGTTAAAAA
1 ACTCACAACGTTAAAAA
22386788 ACTCACAACGTTAAAAA
1 ACTCACAACGTTAAAAA
22386805 ACTCA
1 ACTCA
22386810 GGAGAGGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.51, C:0.23, G:0.08, T:0.18
Consensus pattern (17 bp):
ACTCACAACGTTAAAAA
Found at i:22389936 original size:64 final size:64
Alignment explanation
Indices: 22389835--22389962 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
22389825 TCCCAAGCTA
*
22389835 CTTTGCATTCATCAGATGTCTCATCTCCTTCACAAACTTGCTTGGCTTCTGTCACTTTCTTCTC
1 CTTTGCATTCATCAGATGTCTCATCTCCTTCACAAACTTGCTTGGCTTCTATCACTTTCTTCTC
* *
22389899 CTTTGCATTCATCAGATGTCTCATCTCCTTTACAAACTTGCTTGGCTTCTATCACTTTTTTCTC
1 CTTTGCATTCATCAGATGTCTCATCTCCTTCACAAACTTGCTTGGCTTCTATCACTTTCTTCTC
22389963 AATCATCTCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.16, C:0.30, G:0.10, T:0.44
Consensus pattern (64 bp):
CTTTGCATTCATCAGATGTCTCATCTCCTTCACAAACTTGCTTGGCTTCTATCACTTTCTTCTC
Found at i:22390680 original size:12 final size:12
Alignment explanation
Indices: 22390663--22390693 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
22390653 TGTTCTATAT
22390663 ATATATTTTTTG
1 ATATATTTTTTG
22390675 ATATA-TTTTTG
1 ATATATTTTTTG
22390686 ATATATTT
1 ATATATTT
22390694 AAAAGTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (12 bp):
ATATATTTTTTG
Found at i:22391507 original size:12 final size:12
Alignment explanation
Indices: 22391490--22391515 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22391480 TGGTAACTTT
22391490 AGTCATTGCTTG
1 AGTCATTGCTTG
22391502 AGTCATTGCTTG
1 AGTCATTGCTTG
22391514 AG
1 AG
22391516 AAACTTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.38
Consensus pattern (12 bp):
AGTCATTGCTTG
Found at i:22393031 original size:32 final size:32
Alignment explanation
Indices: 22392965--22393032 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
22392955 TTTTTGTTTA
* *
22392965 TGTTGGATTCTAAAATTTTAGTTTATTATATT
1 TGTTGGATTCTAAAATTTTAGTCTATGATATT
*
22392997 TGTTGGATTCTGAAATTATTATGTCT-TGAT-TT
1 TGTTGGATTCTAAAATT-TTA-GTCTATGATATT
22393029 TGTT
1 TGTT
22393033 AGATATTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 22 0.71
33 6 0.19
34 3 0.10
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (32 bp):
TGTTGGATTCTAAAATTTTAGTCTATGATATT
Found at i:22393058 original size:27 final size:27
Alignment explanation
Indices: 22393028--22393100 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
22393018 TGTCTTGATT
22393028 TTGTTAGATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
22393055 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTCAAGC
*
22393087 TTGTTGGATATTGA
1 TTGTTAGATATTGA
22393101 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 14 0.36
32 25 0.64
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:22393080 original size:32 final size:32
Alignment explanation
Indices: 22393041--22393101 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
22393031 TTAGATATTG
22393041 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
* *
22393073 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTCAAGCTTGTTAGATATTGAA
22393102 ATGATTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAGCTTGTTAGATATTGAATTT
Found at i:22394126 original size:22 final size:22
Alignment explanation
Indices: 22394096--22394140 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
22394086 ATTGTTGTTT
*
22394096 TCATGTGGTGTAATATTAGTTA
1 TCATATGGTGTAATATTAGTTA
22394118 TCATATGGTGTAATATTAGTTA
1 TCATATGGTGTAATATTAGTTA
22394140 T
1 T
22394141 GCACTTGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.04, G:0.20, T:0.47
Consensus pattern (22 bp):
TCATATGGTGTAATATTAGTTA
Found at i:22394200 original size:68 final size:68
Alignment explanation
Indices: 22394060--22394203 Score: 200
Period size: 68 Copynumber: 2.1 Consensus size: 68
22394050 TAATGTGGTG
* * * *
22394060 TAATATTAGTTATGCACTTGGACAATATTGTTGTTTTCATGTGGTGTAATATTAGTTATCATATG
1 TAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTATCATATA
*
22394125 GTG
66 GTA
* * *
22394128 TAATATTAGTTATGCACTTGGATAATGTTGTTGTTATCATGTGGTGTAATACTAATTATGCATTT
1 TAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTAT-CATAT
22394193 AG-A
65 AGTA
22394196 TAATATTA
1 TAATATTA
22394204 TTAATTTCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
68 62 0.93
69 5 0.07
ACGTcount: A:0.29, C:0.07, G:0.19, T:0.45
Consensus pattern (68 bp):
TAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTATCATATA
GTA
Found at i:22394576 original size:14 final size:14
Alignment explanation
Indices: 22394557--22394615 Score: 75
Period size: 14 Copynumber: 4.2 Consensus size: 14
22394547 CCAGAAAAGT
22394557 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
22394571 AAATCATTTTTCAAG
1 AAATCA-TTTTCCAG
*
22394586 AAATCATTTTCTAG
1 AAATCATTTTCCAG
*
22394600 AAATTATTTTCC-G
1 AAATCATTTTCCAG
22394613 AAA
1 AAA
22394616 AATATTTTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
13 4 0.10
14 23 0.57
15 13 0.32
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:22394618 original size:29 final size:29
Alignment explanation
Indices: 22394557--22394623 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
22394547 CCAGAAAAGT
*
22394557 AAATCATTTTCCAGAAATCATTTTTCAAG
1 AAATCATTTTCCAGAAATCATTTTCCAAG
* *
22394586 AAATCATTTTCTAGAAATTATTTTCCGAA-
1 AAATCATTTTCCAGAAATCATTTTCC-AAG
22394615 AAAT-ATTTT
1 AAATCATTTT
22394624 ACCTGCAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 5 0.15
29 27 0.79
30 2 0.06
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (29 bp):
AAATCATTTTCCAGAAATCATTTTCCAAG
Found at i:22395292 original size:21 final size:21
Alignment explanation
Indices: 22395266--22395305 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22395256 TGTAACAAAT
22395266 ATATTATAAATTTTTTTCCAA
1 ATATTATAAATTTTTTTCCAA
* *
22395287 ATATTATGATTTTTTTTCC
1 ATATTATAAATTTTTTTCC
22395306 TTAAAATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.03, T:0.57
Consensus pattern (21 bp):
ATATTATAAATTTTTTTCCAA
Found at i:22397627 original size:42 final size:42
Alignment explanation
Indices: 22397561--22397644 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
22397551 AGGTAAACAA
*
22397561 AATTAGCCTTAACTTTACACATTTTATCAATTTAGTCTTACT
1 AATTAGCCTCAACTTTACACATTTTATCAATTTAGTCTTACT
* *
22397603 AATTAGCCTCAACTTTATATATTTTATCAATTTAGTCTTACT
1 AATTAGCCTCAACTTTACACATTTTATCAATTTAGTCTTACT
22397645 TCTTAAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.18, G:0.05, T:0.46
Consensus pattern (42 bp):
AATTAGCCTCAACTTTACACATTTTATCAATTTAGTCTTACT
Found at i:22401437 original size:36 final size:35
Alignment explanation
Indices: 22401376--22401453 Score: 90
Period size: 36 Copynumber: 2.3 Consensus size: 35
22401366 TTTAATTTTT
*
22401376 TATAGTTTATATTTTTATAATTTTAAAGAATTAAAA
1 TATAATTTATATTTTTATAATTTTAAA-AATTAAAA
* *
22401412 TATAATTTTTATTTTTATTAA-TTTAAAATTTAAAA
1 TATAATTTATATTTTTA-TAATTTTAAAAATTAAAA
22401447 -A-AATTTA
1 TATAATTTA
22401454 ATACTTAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
33 5 0.14
34 1 0.03
35 7 0.19
36 21 0.57
37 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (35 bp):
TATAATTTATATTTTTATAATTTTAAAAATTAAAA
Found at i:22403604 original size:6 final size:6
Alignment explanation
Indices: 22403593--22403617 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
22403583 CGCTATACGC
22403593 TCCCCT TCCCCT TCCCCT TCCCCT T
1 TCCCCT TCCCCT TCCCCT TCCCCT T
22403618 ACATTTACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (6 bp):
TCCCCT
Found at i:22406714 original size:35 final size:35
Alignment explanation
Indices: 22406674--22406743 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
22406664 ATAATATTTC
*
22406674 ATGATAATAATCTTCATATCATATAAATAACATTA
1 ATGATAATAATCATCATATCATATAAATAACATTA
22406709 ATGATAATAATCATCATATCATATAAATAACATTA
1 ATGATAATAATCATCATATCATATAAATAACATTA
22406744 TATTACTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.36
Consensus pattern (35 bp):
ATGATAATAATCATCATATCATATAAATAACATTA
Found at i:22406746 original size:19 final size:19
Alignment explanation
Indices: 22406689--22406746 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
22406679 AATAATCTTC
22406689 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
22406708 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
22406724 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
22406743 ATAT
1 ATAT
22406747 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:22409755 original size:37 final size:37
Alignment explanation
Indices: 22409705--22409781 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
22409695 GAATAGTATA
22409705 TATGCAGGAGTCAGCATAGAACTCACTTGATTCTCAC
1 TATGCAGGAGTCAGCATAGAACTCACTTGATTCTCAC
* *
22409742 TATGCATGAGTCAGCATAGAATTCACTTGATTCTCAC
1 TATGCAGGAGTCAGCATAGAACTCACTTGATTCTCAC
22409779 TAT
1 TAT
22409782 CGGTAGTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (37 bp):
TATGCAGGAGTCAGCATAGAACTCACTTGATTCTCAC
Found at i:22411025 original size:22 final size:24
Alignment explanation
Indices: 22410980--22411025 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
22410970 AGATATTAAA
*
22410980 TGTAATCTTTAGAAGATATGATTT
1 TGTAATCTTTAGAAGATATAATTT
*
22411004 TGTAATC-TTAG-AGATTTAATTT
1 TGTAATCTTTAGAAGATATAATTT
22411026 CTAAATAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 4 0.20
24 7 0.35
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (24 bp):
TGTAATCTTTAGAAGATATAATTT
Found at i:22416562 original size:2 final size:2
Alignment explanation
Indices: 22416550--22416599 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
22416540 TATAAATAAA
22416550 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22416591 AT AT AT AT A
1 AT AT AT AT A
22416600 ATGAGAGAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22423058 original size:5 final size:5
Alignment explanation
Indices: 22423048--22423089 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
22423038 TGCTGGCAAC
22423048 TGTTT TGTTT TGTTT TGTTT T-TCGTT TGTTT TGTTT TGTTT T
1 TGTTT TGTTT TGTTT TGTTT TGT--TT TGTTT TGTTT TGTTT T
22423090 TCGACTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 1 0.03
5 29 0.85
6 3 0.09
7 1 0.03
ACGTcount: A:0.00, C:0.02, G:0.19, T:0.79
Consensus pattern (5 bp):
TGTTT
Done.