Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 66 of 335
Found at i:22890495 original size:72 final size:72
Alignment explanation
Indices: 22890316--22891780 Score: 1850
Period size: 72 Copynumber: 20.0 Consensus size: 72
22890306 TGACAAACGA
* **
22890316 AAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----TT
*
22890379 TTTGAAAAATAG
62 TTTG-AAAACAG
* * * *
22890391 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCTCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22890456 AAAACAG
66 AAAACAG
* * *
22890463 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAGTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22890528 AAAACAG
66 AAAACAG
* * * *
22890535 AAATTGAAATTACCTCAACGTGTCTTGAGGATCAACTCATTTATCGCAATATGAGCTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTT
*
22890600 TGAAAGATAG
64 TGAAA-ACAG
* * * **
22890610 AAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TT
22890674 TTTGAAAACAG
62 TTTGAAAACAG
* *
22890685 AAATTGAAAATACCTCAACGTGTCTTGAGGCTTAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22890750 AAAACAG
66 AAAACAG
* * * *** * *
22890757 AAATTGAAATTACCTCAGCATGTCCCAAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22890822 AAAACAG
66 AAAACAG
* *
22890829 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGGAATATGTGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTT
*
22890894 TAAAAGACAG
64 TGAAA-ACAG
* * **
22890904 AAATTGAAAATACCTCAACATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAATACCTCAAC--GTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
22890968 TTGAAAACAG
63 TTGAAAACAG
*
22890978 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22891043 AAAACAG
66 AAAACAG
* *** *
22891050 AAATTGAAATTACCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22891115 AAAACAG
66 AAAACAG
22891122 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTT
22891187 TGAAAGA-A-
64 TGAAA-ACAG
* * * ** *
22891195 AAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCTATATGAGTTGATTT
1 AAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
22891259 TTGAAAACAG
63 TTGAAAACAG
* *
22891269 AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22891334 AAAACAG
66 AAAACAG
* *** *
22891341 AAATTGAAATTACCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22891406 AAAACAG
66 AAAACAG
* *
22891413 AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCCCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTT
22891478 TGAAAGACAG
64 TGAAA-ACAG
* * * * **
22891488 AAATTAAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
22891552 TTGAAAACA-
63 TTGAAAACAG
* *
22891561 AAATTGAAAATACCTCGACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22891626 AAAACAG
66 AAAACAG
* * * **
22891633 AAATTGAAATTACCTCAGCGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-----T
*
22891698 TTTTGAAAAATAG
61 TTTTG-AAAACAG
* * * *
22891711 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGCTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
22891776 AAAAC
66 AAAAC
22891781 GGAAGTAACA
Statistics
Matches: 1216, Mismatches: 135, Indels: 81
0.85 0.09 0.06
Matches are distributed among these distances:
70 1 0.00
71 48 0.04
72 646 0.53
73 86 0.07
74 75 0.06
75 150 0.12
76 11 0.01
77 137 0.11
78 62 0.05
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (72 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
AAAACAG
Found at i:22891109 original size:293 final size:293
Alignment explanation
Indices: 22890340--22891774 Score: 2390
Period size: 293 Copynumber: 4.9 Consensus size: 293
22890330 TCAGCGTCTT
*
22890340 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATAGAAATTGAAAATACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTG-AAAACAGAAATTGAAAATACC
* * *
22890405 TCAGCATGTCTTGAGGCTCAACTCATTTCTCTCAATATGAGTTGAATTTTGAAAACAGAAATTGA
61 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
*** * *
22890470 AATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAGTTTTGAAAACAG
126 AATTACCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAG
* * * *
22890535 AAATTGAAATTACCTCAACGTGTCTTGAGGATCAACTCATTTATCGCAATATGAGCTGATTTTTT
191 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
*
22890600 TGAAAGATAGAAATTGAAAATACCTCAGCATGTGAACC
256 TGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC
22890638 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAAATACCTCAA
*
22890703 CGTGTCTTGAGGCTTAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATT
65 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATT
* * *
22890768 ACCTCAGCATGTCCCAAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAGAAAT
130 ACCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAAT
* * *
22890833 TGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGGAATATGTGTTGATTTTTTTAAA
195 TGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAA
*
22890898 AGACAGAAATTGAAAATACCTCAACATGTGAACC
260 AGACAGAAATTGAAAATACCTCAGCATGTGAACC
22890932 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAAC
22890997 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
66 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
22891062 CCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
131 CCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
22891127 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAA
196 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAA
22891192 GA-A-AAATTGAAAATACCTCAGCATGTGAACC
261 GACAGAAATTGAAAATACCTCAGCATGTGAACC
*
22891223 GAGGCTCAACTCACCTCTCGCTATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAAC
*
22891288 ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
66 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
22891353 CCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
131 CCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
* *
22891418 GAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCCCGCAATATGAGTTGATTTTTTTGAAA
196 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAA
*
22891483 GACAGAAATTAAAAATACCTCAGCATGTGAACC
261 GACAGAAATTGAAAATACCTCAGCATGTGAACC
*
22891516 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACA-AAATTGAAAATACCTCGAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAAC
22891580 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
66 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
* * * ** * *
22891645 CCTCAGCGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAATA
131 CCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGA-----ATTTTG-AAAACA
* * * *
22891710 GAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGCTGAATTTT
190 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
22891775 GAAAACGGAA
Statistics
Matches: 1080, Mismatches: 49, Indels: 16
0.94 0.04 0.01
Matches are distributed among these distances:
291 285 0.26
292 126 0.12
293 293 0.27
294 265 0.25
295 7 0.01
297 5 0.00
298 99 0.09
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (293 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAAC
GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
CCTCAACGTGTCCCAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
GAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAA
GACAGAAATTGAAAATACCTCAGCATGTGAACC
Found at i:22903712 original size:2 final size:2
Alignment explanation
Indices: 22903705--22903735 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
22903695 TGTACGTAAA
*
22903705 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22903736 AATAGTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:22903769 original size:23 final size:22
Alignment explanation
Indices: 22903743--22903788 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
22903733 ATAAATAGTA
22903743 ATAGTGTTAGAAATATACTATAT
1 ATAGTGTTAGAAATATA-TATAT
* *
22903766 ATAGTGTTTGAAGTATATATAT
1 ATAGTGTTAGAAATATATATAT
22903788 A
1 A
22903789 AAATAGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.41
Consensus pattern (22 bp):
ATAGTGTTAGAAATATATATAT
Found at i:22903794 original size:25 final size:23
Alignment explanation
Indices: 22903742--22903796 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
22903732 TATAAATAGT
22903742 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
22903765 TATAGTGTTTGAAGTATATA-TATAA
1 AATAGTGTTAGAA--ATATACTAT-A
22903790 AATAGTG
1 AATAGTG
22903797 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 3 0.12
25 12 0.46
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.38
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:22903897 original size:12 final size:12
Alignment explanation
Indices: 22903820--22904019 Score: 50
Period size: 12 Copynumber: 15.8 Consensus size: 12
22903810 TAATGTTAAG
22903820 ATATATATAATA
1 ATATATATAATA
*
22903832 TATACATATATATA
1 -ATATATATA-ATA
* *
22903846 AAATGGATATAAAA
1 ATAT--ATATAATA
* *
22903860 AAATATGTACATA
1 ATATATATA-ATA
* *
22903873 ACATATAT--GA
1 ATATATATAATA
22903883 ATATATATAATA
1 ATATATATAATA
*
22903895 ATAT-TAAAATA
1 ATATATATAATA
* *
22903906 AAATA-ATAAGTG
1 ATATATATAA-TA
*
22903918 ATAATAATGAAAATA
1 AT-AT-AT-ATAATA
**
22903933 ATAGGTATAATA
1 ATATATATAATA
* *
22903945 ATAAATATGATA
1 ATATATATAATA
* *
22903957 ATGTATGAAAATA
1 ATATAT-ATAATA
*
22903970 ATACTATATATAAA
1 ATA-TATATA-ATA
22903984 AGTATATATATATA
1 A-TATATATA-ATA
*
22903998 CTCATATAATAA-A
1 AT-ATAT-ATAATA
22904011 ATATATATA
1 ATATATATA
22904020 CTAGTATTAA
Statistics
Matches: 135, Mismatches: 34, Indels: 38
0.65 0.16 0.18
Matches are distributed among these distances:
10 8 0.06
11 15 0.11
12 33 0.24
13 32 0.24
14 31 0.23
15 13 0.10
16 3 0.02
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.34
Consensus pattern (12 bp):
ATATATATAATA
Found at i:22903944 original size:21 final size:22
Alignment explanation
Indices: 22903905--22903946 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
22903895 ATATTAAAAT
22903905 AAAATAATAAGTGATAATAATG
1 AAAATAATAAGTGATAATAATG
*
22903927 AAAATAATAGGT-ATAATAAT
1 AAAATAATAAGTGATAATAAT
22903947 AAATATGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.29
Consensus pattern (22 bp):
AAAATAATAAGTGATAATAATG
Found at i:22904004 original size:26 final size:25
Alignment explanation
Indices: 22903970--22904019 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
22903960 TATGAAAATA
22903970 ATACTATAT-ATAAAAGTATATATAT
1 ATACTATATAATAAAA-TATATATAT
22903995 ATACTCATATAATAAAATATATATA
1 ATACT-ATATAATAAAATATATATA
22904020 CTAGTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.22
26 12 0.52
27 6 0.26
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (25 bp):
ATACTATATAATAAAATATATATAT
Found at i:22904183 original size:22 final size:24
Alignment explanation
Indices: 22904129--22904187 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 24
22904119 TAATATTTAT
*
22904129 ATATGTACATAATATAGTGTTAAAA
1 ATATATACATAATATAG-GTTAAAA
*
22904154 ATACATACATAATATA-GTT-AAA
1 ATATATACATAATATAGGTTAAAA
22904176 ATATATACATAA
1 ATATATACATAA
22904188 GATAACATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.45
23 3 0.10
25 14 0.45
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.34
Consensus pattern (24 bp):
ATATATACATAATATAGGTTAAAA
Found at i:22904268 original size:27 final size:25
Alignment explanation
Indices: 22904211--22904281 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
22904201 AAATATATAT
* *
22904211 ATATATATAAATAATATAGTATTAA
1 ATATATATACATAATATAGTATAAA
* *
22904236 ACATATATACATAAAATAGTATAGAAA
1 ATATATATACATAATATAGTAT--AAA
*
22904263 ATATATATACGTAATATAG
1 ATATATATACATAATATAG
22904282 AATTTAGAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 19 0.51
27 18 0.49
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (25 bp):
ATATATATACATAATATAGTATAAA
Found at i:22904344 original size:23 final size:25
Alignment explanation
Indices: 22904301--22904346 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22904291 TATACCTAAT
22904301 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
22904326 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
22904347 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:22906485 original size:23 final size:23
Alignment explanation
Indices: 22906450--22906501 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
22906440 TTTAGAATTT
22906450 AAATT-TTTTTAAAAAATATAAA
1 AAATTATTTTTAAAAAATATAAA
*
22906472 AAATTATTTTTAAAAATTATAAA
1 AAATTATTTTTAAAAAATATAAA
22906495 AAATTAT
1 AAATTAT
22906502 AAAAAGAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 5 0.18
23 23 0.82
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
AAATTATTTTTAAAAAATATAAA
Found at i:22908116 original size:17 final size:17
Alignment explanation
Indices: 22908094--22908158 Score: 69
Period size: 17 Copynumber: 3.7 Consensus size: 17
22908084 TATTTCTAAT
22908094 TAATTTTTAAAAATTTA
1 TAATTTTTAAAAATTTA
* *
22908111 TAATTTTTTTATAATTTTA
1 TAA--TTTTTAAAAATTTA
*
22908130 TACTTTTTAATAAATTT-
1 TAATTTTTAA-AAATTTA
22908147 TAATTTTTAAAA
1 TAATTTTTAAAA
22908159 TAATTAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
16 2 0.05
17 18 0.46
18 5 0.13
19 14 0.36
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (17 bp):
TAATTTTTAAAAATTTA
Found at i:22908121 original size:19 final size:19
Alignment explanation
Indices: 22908097--22908154 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
22908087 TTCTAATTAA
22908097 TTTTTAAAAATTTATAATT
1 TTTTTAAAAATTTATAATT
* * *
22908116 TTTTTATAATTTTAT-A-C
1 TTTTTAAAAATTTATAATT
22908133 TTTTTAATAAATTT-TAATT
1 TTTTTAA-AAATTTATAATT
22908152 TTT
1 TTT
22908155 AAAATAATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
17 7 0.23
18 7 0.23
19 16 0.53
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTTAAAAATTTATAATT
Found at i:22908163 original size:18 final size:16
Alignment explanation
Indices: 22908093--22908158 Score: 69
Period size: 18 Copynumber: 3.8 Consensus size: 16
22908083 ATATTTCTAA
22908093 TTAATTTTTAAAAATT
1 TTAATTTTTAAAAATT
* *
22908109 TATAATTTTTTTATAATT
1 T-TAA-TTTTTAAAAATT
22908127 TTATACTTTTTAATAAATT
1 TTA-A-TTTTTAA-AAATT
22908146 TTAATTTTTAAAA
1 TTAATTTTTAAAA
22908159 TAATTAATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
16 3 0.07
17 12 0.29
18 19 0.46
19 7 0.17
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
TTAATTTTTAAAAATT
Found at i:22915810 original size:12 final size:12
Alignment explanation
Indices: 22915795--22915839 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
22915785 CAAAAATGGC
*
22915795 AATGACAATGAA
1 AATGATAATGAA
22915807 AATGATAATGAA
1 AATGATAATGAA
*
22915819 AATGATAATGAT
1 AATGATAATGAA
*
22915831 AATAATAAT
1 AATGATAAT
22915840 AATAATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.58, C:0.02, G:0.13, T:0.27
Consensus pattern (12 bp):
AATGATAATGAA
Found at i:22915816 original size:18 final size:18
Alignment explanation
Indices: 22915795--22915833 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
22915785 CAAAAATGGC
*
22915795 AATGACAATGAAAATGAT
1 AATGAAAATGAAAATGAT
*
22915813 AATGAAAATGATAATGAT
1 AATGAAAATGAAAATGAT
22915831 AAT
1 AAT
22915834 AATAATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.56, C:0.03, G:0.15, T:0.26
Consensus pattern (18 bp):
AATGAAAATGAAAATGAT
Found at i:22915929 original size:3 final size:3
Alignment explanation
Indices: 22915823--22915903 Score: 153
Period size: 3 Copynumber: 27.0 Consensus size: 3
22915813 AATGAAAATG
*
22915823 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22915871 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22915904 TAACGTAGAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:22916143 original size:23 final size:23
Alignment explanation
Indices: 22916104--22916174 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 23
22916094 GATATTAAAA
*
22916104 ATATATACATAA-A-AATATAAT
1 ATATATATATAATATAATATAAT
22916125 ATATATATATAATATAATAT-AT
1 ATATATATATAATATAATATAAT
* *
22916147 ACATA-ATATAGTATTAA-A-AAT
1 ATATATATATAATA-TAATATAAT
22916168 ATATATA
1 ATATATA
22916175 ATACATACAC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
21 25 0.61
22 11 0.27
23 5 0.12
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (23 bp):
ATATATATATAATATAATATAAT
Found at i:22916146 original size:16 final size:16
Alignment explanation
Indices: 22916125--22916181 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
22916115 AAAATATAAT
*
22916125 ATATATATATAATATA
1 ATATATACATAATATA
22916141 ATATATACATAATATA
1 ATATATACATAATATA
* *
22916157 GTAT-TA-AAAATAT-
1 ATATATACATAATATA
22916170 ATATAATACATA
1 ATAT-ATACATA
22916182 CACATTAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
13 3 0.09
14 6 0.18
15 4 0.12
16 20 0.61
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.39
Consensus pattern (16 bp):
ATATATACATAATATA
Found at i:22916436 original size:24 final size:24
Alignment explanation
Indices: 22916369--22916425 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
22916359 TAGTAATTAT
* * * *
22916369 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
22916393 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
22916417 AATAATAAT
1 AATAATAAT
22916426 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:22927620 original size:76 final size:76
Alignment explanation
Indices: 22927494--22927642 Score: 289
Period size: 76 Copynumber: 2.0 Consensus size: 76
22927484 TATCTCCCTC
22927494 TACAGGGTTTTCAGTCTCTTCATAGAATTCAATTTCTTTATTGTTCATCATGTTTTGTACTAGGG
1 TACAGGGTTTTCAGTCTCTTCATAGAATTCAATTTCTTTATTGTTCATCATGTTTTGTACTAGGG
22927559 CTCTGAACCTT
66 CTCTGAACCTT
*
22927570 TACAGGGTTTTCGGTCTCTTCATAGAATTCAATTTCTTTATTGTTCATCATGTTTTGTACTAGGG
1 TACAGGGTTTTCAGTCTCTTCATAGAATTCAATTTCTTTATTGTTCATCATGTTTTGTACTAGGG
22927635 CTCTGAAC
66 CTCTGAAC
22927643 TCCATGCAAT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.21, C:0.18, G:0.17, T:0.44
Consensus pattern (76 bp):
TACAGGGTTTTCAGTCTCTTCATAGAATTCAATTTCTTTATTGTTCATCATGTTTTGTACTAGGG
CTCTGAACCTT
Found at i:22930648 original size:100 final size:101
Alignment explanation
Indices: 22930474--22930675 Score: 388
Period size: 100 Copynumber: 2.0 Consensus size: 101
22930464 ATACTCGGGC
22930474 GTTACTATGGAACCGACGGCTAACCTCTTCATCCAACAAGTTTACTTCCAAGCATCCGATAACTC
1 GTTACTATGGAACCGACGGCTAACCTCTTCATCCAACAAGTTTACTTCCAAGCATCCGATAACTC
22930539 CCGAACTCTCTTCTTATAATGAGCACCTTTAAATGA
66 CCGAACTCTCTTCTTATAATGAGCACCTTTAAATGA
22930575 GTTACTATGGAA-CGACGGCTAACCTCTTCATCCAACAAGTTTACTTCCAAGCATCCGATAACTC
1 GTTACTATGGAACCGACGGCTAACCTCTTCATCCAACAAGTTTACTTCCAAGCATCCGATAACTC
*
22930639 CCGAACTCTCTTCTTATAATGAGTACCTTTAAATGA
66 CCGAACTCTCTTCTTATAATGAGCACCTTTAAATGA
22930675 G
1 G
22930676 AATTCACTCT
Statistics
Matches: 100, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
100 88 0.88
101 12 0.12
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (101 bp):
GTTACTATGGAACCGACGGCTAACCTCTTCATCCAACAAGTTTACTTCCAAGCATCCGATAACTC
CCGAACTCTCTTCTTATAATGAGCACCTTTAAATGA
Found at i:22933851 original size:3 final size:3
Alignment explanation
Indices: 22933771--22933825 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
22933761 TGACAATGAA
*
22933771 AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22933819 AAT AAT A
1 AAT AAT A
22933826 TAACGTAGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:22934041 original size:11 final size:11
Alignment explanation
Indices: 22934023--22934098 Score: 70
Period size: 11 Copynumber: 6.8 Consensus size: 11
22934013 GTGATATTAA
22934023 AAATATATACAT
1 AAATATATA-AT
22934035 AAA-ATATAAT
1 AAATATATAAT
22934045 AAATATAT-AT
1 AAATATATAAT
*
22934055 ATATATATAAT
1 AAATATATAAT
22934066 ATAATATAT-AT
1 A-AATATATAAT
22934077 AATATAGTATTAA-
1 AA-ATA-TA-TAAT
22934090 AAATATATA
1 AAATATATA
22934099 TAATACATAC
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
10 17 0.31
11 20 0.36
12 14 0.25
13 3 0.05
14 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (11 bp):
AAATATATAAT
Found at i:22934054 original size:2 final size:2
Alignment explanation
Indices: 22934025--22934100 Score: 56
Period size: 2 Copynumber: 40.5 Consensus size: 2
22934015 GATATTAAAA
* * *
22934025 AT AT AT AC AT A- AA AT AT A- AT AA AT AT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
22934064 AT AT A- AT AT AT AT A- AT AT AGT AT -T AA AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT A
22934101 ATACATACAC
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
1 6 0.10
2 52 0.87
3 2 0.03
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (2 bp):
AT
Found at i:22934066 original size:26 final size:26
Alignment explanation
Indices: 22934025--22934082 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
22934015 GATATTAAAA
22934025 ATATATACATAAAATATAATAAATAT
1 ATATATACATAAAATATAATAAATAT
* * *
22934051 ATATATATATATAATATAATATATAT
1 ATATATACATAAAATATAATAAATAT
22934077 A-ATATA
1 ATATATA
22934083 GTATTAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (26 bp):
ATATATACATAAAATATAATAAATAT
Found at i:22934076 original size:14 final size:14
Alignment explanation
Indices: 22934024--22934082 Score: 70
Period size: 14 Copynumber: 4.4 Consensus size: 14
22934014 TGATATTAAA
* *
22934024 AATAT-ATACATAA
1 AATATAATATATAT
*
22934037 AATATAATAAATAT
1 AATATAATATATAT
22934051 -ATAT-ATATATAT
1 AATATAATATATAT
22934063 AATATAATATATAT
1 AATATAATATATAT
22934077 AATATA
1 AATATA
22934083 GTATTAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
12 7 0.17
13 13 0.32
14 20 0.50
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (14 bp):
AATATAATATATAT
Found at i:22934081 original size:23 final size:22
Alignment explanation
Indices: 22934020--22934103 Score: 91
Period size: 23 Copynumber: 3.7 Consensus size: 22
22934010 AATGTGATAT
* *
22934020 TAAAAATATATACATAAAATATAA
1 TAAATATATATA-AT-ATATATAA
22934044 TAAATATATAT-ATATATATAA
1 TAAATATATATAATATATATAA
22934065 TATAATATATATAATATAGTATTAA
1 TA-AATATATATAATATA-TA-TAA
22934090 -AAATATATATAATA
1 TAAATATATATAATA
22934104 CATACACATT
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
21 9 0.17
22 11 0.20
23 18 0.33
24 13 0.24
25 3 0.06
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (22 bp):
TAAATATATATAATATATATAA
Found at i:22934357 original size:24 final size:24
Alignment explanation
Indices: 22934290--22934346 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
22934280 TAGTAATTAT
* * * *
22934290 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
22934314 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
22934338 AATAATAAT
1 AATAATAAT
22934347 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:22935879 original size:3 final size:3
Alignment explanation
Indices: 22935835--22935864 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
22935825 TACTACATCT
22935835 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22935865 AAATAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22936034 original size:15 final size:15
Alignment explanation
Indices: 22936014--22936044 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
22936004 AACAATGCCC
22936014 ATGCTAGTCATGTTA
1 ATGCTAGTCATGTTA
22936029 ATGCTAGTCATGTTA
1 ATGCTAGTCATGTTA
22936044 A
1 A
22936045 GAATTTATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (15 bp):
ATGCTAGTCATGTTA
Found at i:22940129 original size:6 final size:6
Alignment explanation
Indices: 22940118--22940162 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
22940108 CCATTAAAAA
* * *
22940118 TCCATG TCCATG TCCATG TCTATTG TCTATG TCTATG TCCATG TC
1 TCCATG TCCATG TCCATG TCCA-TG TCCATG TCCATG TCCATG TC
22940163 TTGTTAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 30 0.83
7 6 0.17
ACGTcount: A:0.16, C:0.27, G:0.16, T:0.42
Consensus pattern (6 bp):
TCCATG
Found at i:22940149 original size:13 final size:12
Alignment explanation
Indices: 22940118--22940163 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
22940108 CCATTAAAAA
*
22940118 TCCATGTCCATG
1 TCCATGTCTATG
22940130 TCCATGTCTATTG
1 TCCATGTCTA-TG
*
22940143 TCTATGTCTATG
1 TCCATGTCTATG
22940155 TCCATGTCT
1 TCCATGTCT
22940164 TGTTAAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
12 19 0.63
13 11 0.37
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.43
Consensus pattern (12 bp):
TCCATGTCTATG
Found at i:22945433 original size:2 final size:2
Alignment explanation
Indices: 22945426--22945475 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
22945416 GCAAAGGCTT
22945426 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22945468 AG -G AG AG A
1 AG AG AG AG A
22945476 AGGAGAACAA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22955039 original size:59 final size:60
Alignment explanation
Indices: 22954914--22955041 Score: 141
Period size: 59 Copynumber: 2.1 Consensus size: 60
22954904 TGATCTTAAA
* * * * * * * *
22954914 TATAAAAATTCAACAAATTTAGCTCTCAGTGTTTATAAAATTTGTCATTTTAGTTCTAAT
1 TATAAAAATACAACAAATTTAGCTCTCAATATTTACAAAATCTGTCAATTTAGTCCTAAC
* * * *
22954974 TCTAAAAATACAATAAATTTCGC-CTCAATATTTACAAAATCTGTCAATTTAGTCCTAGC
1 TATAAAAATACAACAAATTTAGCTCTCAATATTTACAAAATCTGTCAATTTAGTCCTAAC
22955033 TATAAAAAT
1 TATAAAAAT
22955042 TTTAAAAAAT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
59 36 0.65
60 19 0.35
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (60 bp):
TATAAAAATACAACAAATTTAGCTCTCAATATTTACAAAATCTGTCAATTTAGTCCTAAC
Found at i:22955051 original size:10 final size:10
Alignment explanation
Indices: 22955036--22955062 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
22955026 TCCTAGCTAT
22955036 AAAAATTTTA
1 AAAAATTTTA
22955046 AAAAATTTTA
1 AAAAATTTTA
22955056 AAAAATT
1 AAAAATT
22955063 ATTTTTAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAAATTTTA
Found at i:22956271 original size:26 final size:26
Alignment explanation
Indices: 22956234--22956317 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
22956224 TGATACAAAT
* *
22956234 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22956260 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22956286 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22956312 TGATAA
1 TGATAA
22956318 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:22957831 original size:26 final size:26
Alignment explanation
Indices: 22957802--22957854 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22957792 TTTACAGTTT
22957802 TACCCCTAGGAGATAAA-TTACCGAAA
1 TACCCCTAGG-GATAAATTTACCGAAA
* *
22957828 TACCCCTAGGGTTAAATTTACCTAAA
1 TACCCCTAGGGATAAATTTACCGAAA
22957854 T
1 T
22957855 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTTACCGAAA
Found at i:22958073 original size:21 final size:21
Alignment explanation
Indices: 22958047--22958094 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
22958037 ATTCCCCACA
22958047 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
22958068 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
22958089 TTGAGT
1 TGGAGT
22958095 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:22958346 original size:136 final size:136
Alignment explanation
Indices: 22958101--22958385 Score: 534
Period size: 136 Copynumber: 2.1 Consensus size: 136
22958091 GAGTAGTCTC
22958101 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
22958166 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
22958231 CTGTTA
131 CTGTTA
*
22958237 CCCAAATGGGCTTGCATATGTTATTGATGTTGCGTGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
22958302 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
22958367 CTGTTA
131 CTGTTA
**
22958373 CCTGAATGGGCTT
1 CCCAAATGGGCTT
22958386 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 145 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:22965626 original size:29 final size:30
Alignment explanation
Indices: 22965586--22965648 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
22965576 TGGACACTAC
* *
22965586 TATATATACATA-AT-ATGGTA-TTAAAAA
1 TATATATACACATATAATAGTATTTAAAAA
*
22965613 TATATATACACATATAATAGTATTTAAGAA
1 TATATATACACATATAATAGTATTTAAAAA
22965643 TATATA
1 TATATA
22965649 CATAAGATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 11 0.37
28 2 0.07
29 5 0.17
30 12 0.40
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.38
Consensus pattern (30 bp):
TATATATACACATATAATAGTATTTAAAAA
Found at i:22965835 original size:23 final size:24
Alignment explanation
Indices: 22965806--22965862 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
22965796 AACACTACAT
22965806 AAATATATACATAGGACA-ATAT-A
1 AAATATATACAT-GGACATATATAA
* *
22965829 AAATATAAACATGGATATATATAA
1 AAATATATACATGGACATATATAA
22965853 ATAATATATA
1 A-AATATATA
22965863 ACTAGTAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 4 0.14
23 15 0.54
24 2 0.07
25 7 0.25
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (24 bp):
AAATATATACATGGACATATATAA
Found at i:22965901 original size:22 final size:21
Alignment explanation
Indices: 22965804--22965919 Score: 58
Period size: 22 Copynumber: 5.1 Consensus size: 21
22965794 ACAACACTAC
*
22965804 ATAAATATATACATAGGACA-AT
1 ATAAATATATACATA-TA-ATAT
*
22965826 ATAAAATATAAACATGGAT-ATAT
1 AT-AAATATATACAT--ATAATAT
*
22965849 ATAAATAATATATAACTAGTAATAT
1 ATAAAT-ATATA-CA-TA-TAATAT
*
22965874 CA-AAATGTATACATGATAATAT
1 -ATAAATATATACAT-ATAATAT
*
22965896 ATAAATATATATATATATATAT
1 ATAAATATATACATATA-ATAT
22965918 AT
1 AT
22965920 TAGAAAATAT
Statistics
Matches: 73, Mismatches: 8, Indels: 26
0.68 0.07 0.24
Matches are distributed among these distances:
21 4 0.05
22 30 0.41
23 22 0.30
24 6 0.08
25 10 0.14
26 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.34
Consensus pattern (21 bp):
ATAAATATATACATATAATAT
Found at i:22965905 original size:2 final size:2
Alignment explanation
Indices: 22965892--22965974 Score: 59
Period size: 2 Copynumber: 43.0 Consensus size: 2
22965882 ATACATGATA
* * *
22965892 AT AT AT AA AT AT AT AT AT AT AT AT AT AT -T AG A- AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
22965932 GT AC AT A- AT AT AGT AT GAA AT AT AT AT AT AT AT A- AT AT A- AT
1 AT AT AT AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
22965973 AT
1 AT
22965975 TAAAATATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
1 5 0.08
2 56 0.88
3 3 0.05
ACGTcount: A:0.53, C:0.01, G:0.05, T:0.41
Consensus pattern (2 bp):
AT
Found at i:22965989 original size:21 final size:22
Alignment explanation
Indices: 22965957--22966005 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
22965947 TGAAATATAT
* *
22965957 ATATATATAATATAATATTAAA
1 ATATATATAATACAACATTAAA
22965979 ATATA-ATAATACAACATTAAA
1 ATATATATAATACAACATTAAA
*
22966000 AAATAT
1 ATATAT
22966006 GATACATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (22 bp):
ATATATATAATACAACATTAAA
Found at i:22966031 original size:32 final size:32
Alignment explanation
Indices: 22965995--22966058 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
22965985 TAATACAACA
22965995 TTAAAAAATATGAT-ACATAT-AAAATATGATAT
1 TTAAAAAATAT-ATGACATATAAAAATAT-ATAT
**
22966027 TTAAAGTATATATGACATATAAAAATATATAT
1 TTAAAAAATATATGACATATAAAAATATATAT
22966059 ATAATATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 2 0.07
32 19 0.68
33 7 0.25
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (32 bp):
TTAAAAAATATATGACATATAAAAATATATAT
Found at i:22974960 original size:9 final size:9
Alignment explanation
Indices: 22974948--22974972 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22974938 AAAAAATCAA
22974948 AAAAAAAAG
1 AAAAAAAAG
22974957 AAAAAAAAG
1 AAAAAAAAG
22974966 AAAAAAA
1 AAAAAAA
22974973 CCTAATCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:22975199 original size:30 final size:30
Alignment explanation
Indices: 22975163--22975242 Score: 142
Period size: 30 Copynumber: 2.7 Consensus size: 30
22975153 GAGAGAAGAA
22975163 TTTTTTTTGAGATTCAAGAAGAGATTTTTT
1 TTTTTTTTGAGATTCAAGAAGAGATTTTTT
* *
22975193 TTTTTTTTGAGATTCAAGAGGGGATTTTTT
1 TTTTTTTTGAGATTCAAGAAGAGATTTTTT
22975223 TTTTTTTTGAGATTCAAGAA
1 TTTTTTTTGAGATTCAAGAA
22975243 CAAAAATCAG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.25, C:0.04, G:0.19, T:0.53
Consensus pattern (30 bp):
TTTTTTTTGAGATTCAAGAAGAGATTTTTT
Found at i:22975821 original size:3 final size:3
Alignment explanation
Indices: 22975813--22975842 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
22975803 TGTATTTCTA
22975813 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
22975843 ATGGTAGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:22975968 original size:16 final size:15
Alignment explanation
Indices: 22975937--22975979 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
22975927 CCTTCATTCC
*
22975937 ATTATTATTATTACT
1 ATTATTATTTTTACT
22975952 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
22975968 ATCATTATTTTT
1 ATTATTATTTTT
22975980 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:22976217 original size:3 final size:3
Alignment explanation
Indices: 22976211--22976253 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
22976201 GATCATCATC
22976211 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
22976254 GCACTACTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:22976270 original size:9 final size:9
Alignment explanation
Indices: 22976211--22976276 Score: 51
Period size: 9 Copynumber: 7.3 Consensus size: 9
22976201 GATCATCATC
*
22976211 ATTATTATT
1 ATTACTATT
*
22976220 ATTATTATT
1 ATTACTATT
*
22976229 ATTATTATT
1 ATTACTATT
*
22976238 ATTATTATT
1 ATTACTATT
* **
22976247 ATTATTAGC
1 ATTACTATT
* *
22976256 ACTACTTTT
1 ATTACTATT
22976265 ATTACTATT
1 ATTACTATT
22976274 ATT
1 ATT
22976277 TAATATATTA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.61
Consensus pattern (9 bp):
ATTACTATT
Found at i:22976375 original size:22 final size:22
Alignment explanation
Indices: 22976345--22976405 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
22976335 TTATTATATC
*
22976345 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
22976367 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
22976389 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
22976406 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:22981494 original size:28 final size:29
Alignment explanation
Indices: 22981454--22981534 Score: 119
Period size: 28 Copynumber: 2.8 Consensus size: 29
22981444 GAGAGAAGAA
22981454 TTTTTTTTTTGAGATTCAAGAAGAGA-TT
1 TTTTTTTTTTGAGATTCAAGAAGAGATTT
* *
22981482 TTTTTTTTTTGAGATTCAAGAGGGGATTTT
1 TTTTTTTTTTGAGATTCAAGAAGAGA-TTT
22981512 TCTTTTTTTTTGAGATTCAAGAA
1 T-TTTTTTTTTGAGATTCAAGAA
22981535 CAAAAATCAG
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
28 24 0.51
30 3 0.06
31 20 0.43
ACGTcount: A:0.25, C:0.05, G:0.19, T:0.52
Consensus pattern (29 bp):
TTTTTTTTTTGAGATTCAAGAAGAGATTT
Found at i:22989960 original size:205 final size:205
Alignment explanation
Indices: 22989608--22991009 Score: 2460
Period size: 205 Copynumber: 6.9 Consensus size: 205
22989598 GTAATAGGCC
* *
22989608 ACACATAGCAGATCTCGCCTTCAGACGATTTCA--CTGAAGCAGATCCAAGATGGTTTGGCATCC
1 ACACATAGCAGATCTCACCTTCAGATG-TTT-ATGCTGAAGCAGATCCAAGATGGTTTGGCATCC
*
22989671 TTGTGTTTACAAGGAACAAATCGAAAACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
64 TTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
22989736 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
129 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
22989801 GATGGAGAGCAG
194 GATGGAGAGCAG
*
22989813 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
*
22989878 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTATGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
22989943 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
22990008 TGGAGAGCAG
196 TGGAGAGCAG
*
22990018 ACACATAGCAGATCTCACCTTCAGATGATTT-CGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATG-TTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
22990082 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
65 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
22990147 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
130 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
22990212 ATGGAGAGCAG
195 ATGGAGAGCAG
22990223 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCA-ATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
22990287 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
*
22990352 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACAAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
22990417 TGGAGAGCA-
196 TGGAGAGCAG
*
22990426 ACACATAGCAGATCTCACCTTCAGATGATTT-CGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATG-TTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
22990490 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
65 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
22990555 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
130 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
22990620 ATGGAGAGCAG
195 ATGGAGAGCAG
*
22990631 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
22990696 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
22990761 TCTAAGATGATTTGTCGTCTCTGTATCGTCA-AGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
22990825 TGGAGAGCAG
196 TGGAGAGCAG
* * * *
22990835 ACACATAGCAGATCTCACCTTCGGATGTTTATGCTGAAACGGATCCAAGATGGATTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
* * * * ** * * *
22990900 ATGCTTACAAGGAACAAATCGAA-TCATAGTTGATTTGGCTTTCGCGTGCTTACGTTAAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
* * * * * *
22990964 TCTAAGATGATTTGGCATCTCTGTATTGTCAGGGATCAAATCGAAG
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAG
22991010 AAATAAATCT
Statistics
Matches: 1156, Mismatches: 32, Indels: 19
0.96 0.03 0.02
Matches are distributed among these distances:
203 99 0.09
204 471 0.41
205 583 0.50
206 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (205 bp):
ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
TGGAGAGCAG
Found at i:22990883 original size:613 final size:613
Alignment explanation
Indices: 22989608--22991009 Score: 2456
Period size: 613 Copynumber: 2.3 Consensus size: 613
22989598 GTAATAGGCC
* *
22989608 ACACATAGCAGATCTCGCCTTCAGACGATTTCA--CTGAAGCAGATCCAAGATGGTTTGGCATCC
1 ACACATAGCAGATCTCACCTTCAGATG-TTT-ATGCTGAAGC-GATCCAAGATGGTTTGGCATCC
22989671 TTGTGTTTACAAGGAACAAATCGAAAACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
63 TTGTGTTTACAAGGAACAAATCG-AAACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
*
22989736 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
127 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACAAATCGAAGTTTGGCATCTTCACTTT
* *
22989801 GATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGG
192 GATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGG
22989866 TTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTA
257 TTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTA
*
22989931 TGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCA
322 CGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCA
22989996 TCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGA
387 TCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGA
22990061 TCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTT
452 TCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTT
22990126 CATGTGATTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCG
517 CATGTGATTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCG
22990191 AAGTTTGGCATCTTCACTTTGATGGAGAGCAG
582 AAGTTTGGCATCTTCACTTTGATGGAGAGCAG
*
22990223 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAATCCAAGATGGTTTGGCATCCTTG
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGATCCAAGATGGTTTGGCATCCTTG
22990288 TGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAAT
66 TGTTTACAAGGAACAAATCGAA-ACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAAT
22990353 CTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACAAATCGAAGTTTGGCATCTTCACTTTGAT
130 CTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACAAATCGAAGTTTGGCATCTTCACTTTGAT
22990418 GGAGAGCA-ACACATAGCAGATCTCACCTTCAGATGATTT-CGCTGAAGCAGATCCAAGATGGTT
195 GGAGAGCAGACACATAGCAGATCTCACCTTCAGATG-TTTACGCTGAAGCAGATCCAAGATGGTT
22990481 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
259 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
22990546 ATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
324 ATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
* *
22990611 TTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATG-TTTATGCTGAAGCGGAT
389 TTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGATTT-CGCTGAAGCAGAT
22990675 CCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTC
453 CCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTC
22990740 ATGTGATTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCA-AGAACGAATCGA
518 ATGTGATTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGA
22990804 AGTTTGGCATCTTCACTTTGATGGAGAGCAG
583 AGTTTGGCATCTTCACTTTGATGGAGAGCAG
* * *
22990835 ACACATAGCAGATCTCACCTTCGGATGTTTATGCTGAAACGGATCCAAGATGGATTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGC-GATCCAAGATGGTTTGGCATCCTT
* * * * ** * * *
22990900 ATGCTTACAAGGAACAAATCGAATCATAGTTGATTTGGCTTTCGCGTGCTTACGTTAAAGCAAAT
65 GTGTTTACAAGGAACAAATCGAAACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAAT
* * * * *
22990965 CTAAGATGATTTGGCATCTCTGTATTGTCAGGGATCAAATCGAAG
130 CTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACAAATCGAAG
22991010 AAATAAATCT
Statistics
Matches: 754, Mismatches: 27, Indels: 15
0.95 0.03 0.02
Matches are distributed among these distances:
612 159 0.21
613 399 0.53
614 164 0.22
615 32 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (613 bp):
ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGATCCAAGATGGTTTGGCATCCTTG
TGTTTACAAGGAACAAATCGAAACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAATC
TAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACAAATCGAAGTTTGGCATCTTCACTTTGATG
GAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGGTTTG
GCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGAT
GAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTT
CACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCA
AGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATG
TGATTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGT
TTGGCATCTTCACTTTGATGGAGAGCAG
Found at i:22991141 original size:44 final size:43
Alignment explanation
Indices: 22991063--22991148 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
22991053 GATTTCAGCA
* *
22991063 TGGCATCCCTGTGTTTATAAGGAGCAAGTTGAAGACAGCAGATT
1 TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGA-AGCAGATT
**
22991107 TGGCATCCCTGTGTTTATGGGGAAC-AGATCGAAGAAGCAGAT
1 TGGCATCCCTGTGTTTATAAGGAACAAG-TCGAAGAAGCAGAT
22991149 CAAGAACTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 9 0.24
44 28 0.76
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (43 bp):
TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGAAGCAGATT
Found at i:22991560 original size:28 final size:29
Alignment explanation
Indices: 22991521--22991599 Score: 124
Period size: 28 Copynumber: 2.7 Consensus size: 29
22991511 GAGAGAAGAA
22991521 TTTTTTTTTGAGATTCAAGAAGAG-TTTT
1 TTTTTTTTTGAGATTCAAGAAGAGATTTT
* *
22991549 TTTTTTTTTGAGATTCAAGAGGGGATTTT
1 TTTTTTTTTGAGATTCAAGAAGAGATTTT
22991578 TCTTTTTTTTGAGATTCAAGAA
1 T-TTTTTTTTGAGATTCAAGAA
22991600 CAAAAATCAG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 22 0.48
29 5 0.11
30 19 0.41
ACGTcount: A:0.24, C:0.05, G:0.19, T:0.52
Consensus pattern (29 bp):
TTTTTTTTTGAGATTCAAGAAGAGATTTT
Found at i:22992063 original size:3 final size:3
Alignment explanation
Indices: 22992055--22992098 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
22992045 TGCATTTTAA
22992055 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
22992099 GTGTATATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:22992200 original size:3 final size:3
Alignment explanation
Indices: 22992192--22992227 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
22992182 TGTATTTCTA
22992192 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
22992228 ATGGTAGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:22992353 original size:16 final size:15
Alignment explanation
Indices: 22992322--22992364 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
22992312 CCTTCATTCC
*
22992322 ATTATTATTATTACT
1 ATTATTATTTTTACT
22992337 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
22992353 ATCATTATTTTT
1 ATTATTATTTTT
22992365 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:22992489 original size:16 final size:16
Alignment explanation
Indices: 22992468--22992499 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22992458 CTATTGTTAC
22992468 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
22992484 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
22992500 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:22992600 original size:3 final size:3
Alignment explanation
Indices: 22992594--22992642 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
22992584 ATAGATCATC
22992594 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
22992642 A
1 A
22992643 GCACTACTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:22992659 original size:9 final size:9
Alignment explanation
Indices: 22992596--22992665 Score: 59
Period size: 9 Copynumber: 7.8 Consensus size: 9
22992586 AGATCATCAT
*
22992596 TATTATTAT
1 TATTATTAC
*
22992605 TATTATTAT
1 TATTATTAC
*
22992614 TATTATTAT
1 TATTATTAC
*
22992623 TATTATTAT
1 TATTATTAC
*
22992632 TATTATTAT
1 TATTATTAC
** *
22992641 TAGCACTAC
1 TATTATTAC
*
22992650 TTTTATTAC
1 TATTATTAC
22992659 TATTATT
1 TATTATT
22992666 TAATATATTA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.61
Consensus pattern (9 bp):
TATTATTAC
Found at i:22992764 original size:22 final size:22
Alignment explanation
Indices: 22992734--22992794 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
22992724 TTATTATATC
*
22992734 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
22992756 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
22992778 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
22992795 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:22994835 original size:8 final size:9
Alignment explanation
Indices: 22994817--22994843 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
22994807 ACATTTATTC
22994817 AAAAATAAA
1 AAAAATAAA
22994826 AAAAATAAA
1 AAAAATAAA
22994835 AAAAATAAA
1 AAAAATAAA
22994844 TTTTTACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAATAAA
Found at i:22994968 original size:16 final size:16
Alignment explanation
Indices: 22994917--22994969 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
22994907 GAGCTCTTCC
*
22994917 CTTCTCCC-TCTC-TC
1 CTTCTCCCTTCTCTTT
22994931 CTTCCTCCCTTCTCTCTT
1 CTT-CTCCCTTCTCT-TT
22994949 -TTCTCCCTTCTCTTT
1 CTTCTCCCTTCTCTTT
22994964 CTTCTC
1 CTTCTC
22994970 TTTTTTTCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 3 0.09
15 7 0.21
16 20 0.61
17 2 0.06
18 1 0.03
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (16 bp):
CTTCTCCCTTCTCTTT
Found at i:22995837 original size:19 final size:19
Alignment explanation
Indices: 22995790--22995842 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
22995780 TATTATTCAC
*
22995790 TTTCTATATTTTTATCATTA
1 TTTCT-TATTTTTATCACTA
* *
22995810 TTATATTATTTTTGTCACTA
1 TT-TCTTATTTTTATCACTA
*
22995830 TTTCTTATCTTTA
1 TTTCTTATTTTTA
22995843 CTTATATATA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 8 0.31
20 16 0.62
21 2 0.08
ACGTcount: A:0.23, C:0.11, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTCTTATTTTTATCACTA
Found at i:23002727 original size:4 final size:4
Alignment explanation
Indices: 23002718--23002742 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
23002708 TTCACAGATC
23002718 TAAT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT T
23002743 GTTGTTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:23003120 original size:22 final size:22
Alignment explanation
Indices: 23003095--23003137 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
23003085 AATATAAATT
23003095 TTTTTAAAAAATTAAAAATTTA
1 TTTTTAAAAAATTAAAAATTTA
* *
23003117 TTTTTTAAAAATTTAAAATTT
1 TTTTTAAAAAATTAAAAATTT
23003138 TAATTAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTTAAAAAATTAAAAATTTA
Found at i:23003120 original size:23 final size:23
Alignment explanation
Indices: 23003094--23003139 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
23003084 TAATATAAAT
23003094 TTTTTTAAAAAATTAAAAATTTA
1 TTTTTTAAAAAATTAAAAATTTA
* *
23003117 TTTTTTAAAAATTTAAAATTTTA
1 TTTTTTAAAAAATTAAAAATTTA
23003140 ATTAAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTTTTAAAAAATTAAAAATTTA
Found at i:23005778 original size:14 final size:14
Alignment explanation
Indices: 23005761--23005795 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
23005751 TTTATTAGAA
23005761 TAATATTATAATAT
1 TAATATTATAATAT
*
23005775 TAATATTATTATAT
1 TAATATTATAATAT
23005789 TGAATAT
1 T-AATAT
23005796 AGATTTATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (14 bp):
TAATATTATAATAT
Found at i:23014481 original size:17 final size:17
Alignment explanation
Indices: 23014455--23014514 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
23014445 TAAATAATGA
*
23014455 ACATACCCATGTCATAC
1 ACATATCCATGTCATAC
*
23014472 ACATATCCATTTCCAT-C
1 ACATATCCATGT-CATAC
*
23014489 AC-TCATTC-TGTCATAC
1 ACAT-ATCCATGTCATAC
23014505 ACATATCCAT
1 ACATATCCAT
23014515 TTCCATCACT
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
15 3 0.09
16 9 0.27
17 18 0.55
18 3 0.09
ACGTcount: A:0.32, C:0.33, G:0.03, T:0.32
Consensus pattern (17 bp):
ACATATCCATGTCATAC
Found at i:23014506 original size:33 final size:33
Alignment explanation
Indices: 23014464--23014531 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
23014454 AACATACCCA
23014464 TGTCATACACATATCCATTTCCATCACTCATTC
1 TGTCATACACATATCCATTTCCATCACTCATTC
23014497 TGTCATACACATATCCATTTCCATCACTCATTC
1 TGTCATACACATATCCATTTCCATCACTCATTC
23014530 TG
1 TG
23014532 GAGTCTAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.04, T:0.37
Consensus pattern (33 bp):
TGTCATACACATATCCATTTCCATCACTCATTC
Found at i:23017968 original size:15 final size:16
Alignment explanation
Indices: 23017945--23017977 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23017935 AGTGCACAGC
*
23017945 AACAGTAAAAA-AAAA
1 AACACTAAAAATAAAA
23017960 AACACTAAAAATAAAA
1 AACACTAAAAATAAAA
23017976 AA
1 AA
23017978 AAGCTGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.79, C:0.09, G:0.03, T:0.09
Consensus pattern (16 bp):
AACACTAAAAATAAAA
Found at i:23018254 original size:29 final size:29
Alignment explanation
Indices: 23018220--23018283 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
23018210 ATTTTTTGCT
23018220 AAAATA-ATATAAAAAAATAAAATACGAAA
1 AAAATATATATAAAAAAA-AAAATACGAAA
* * * *
23018249 ATAATATATTTTAAAAAAAAGATACGAAA
1 AAAATATATATAAAAAAAAAAATACGAAA
23018278 AAAATA
1 AAAATA
23018284 CAAAGAAAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
29 20 0.69
30 9 0.31
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.22
Consensus pattern (29 bp):
AAAATATATATAAAAAAAAAAATACGAAA
Found at i:23018293 original size:147 final size:147
Alignment explanation
Indices: 23018103--23018593 Score: 758
Period size: 146 Copynumber: 3.4 Consensus size: 147
23018093 AGCACTGTAA
* * *
23018103 AATATATTTTAAAAAATAAGATATGAAAAAAATACAAAAAAAGTGTCAAAATCAAGGTTATTTAT
1 AATATATTTTAAAAAATAAGATACGAAAAAAATACAAAGAAAGTGTCAAAATCAGGGTTATTTAT
* *
23018168 TAAATTAATATAAAAAAAACATTTACATAATCCATTTGAAATATTTTTTGCTAAAATAATATAAA
66 TAAATTAATATAAAAAAAACA-TTACATAATACATTTGAAACATTTTTTGCTAAAATAATATAAA
*
23018233 AAAATAAAATACGAAAAT
130 GAAATAAAATACGAAAAT
*
23018251 AATATATTTTAAAAAA-AAGATACGAAAAAAATACAAAGAAAGTGTCAAAATCAGGGTTATTTTT
1 AATATATTTTAAAAAATAAGATACGAAAAAAATACAAAGAAAGTGTCAAAATCAGGGTTATTTAT
* *
23018315 TAAATTAATATAAAAAACAC-TTACATAATACATTTGAAACATTTTTGGCTAAAATAATATAAAG
66 TAAATTAATATAAAAAAAACATTACATAATACATTTGAAACATTTTTTGCTAAAATAATATAAAG
23018379 AAATAAAATACGAAAAT
131 AAATAAAATACGAAAAT
23018396 AATATATTTTAAAAAATAAGATACGAAAAAAATACGAAA-AAAGTGTCAAAATCAGGGTTATTTA
1 AATATATTTTAAAAAATAAGATACGAAAAAAATAC-AAAGAAAGTGTCAAAATCAGGGTTATTTA
* * * * * * * *
23018460 TTGAAA-AAATATAAAAAATAC-TTAAATAATACATTTAAAACATTATGTACTAAAATAATATGA
65 TT-AAATTAATATAAAAAAAACATTACATAATACATTTGAAACATTTTTTGCTAAAATAATATAA
23018523 AGAAATAAAATACGAAAAT
129 AGAAATAAAATACGAAAAT
*
23018542 AATATATTTTAAAAAATAAGATACGAAAAAAATACGAAGAAAGTGTCAAAAT
1 AATATATTTTAAAAAATAAGATACGAAAAAAATACAAAGAAAGTGTCAAAAT
23018594 AATATATTTT
Statistics
Matches: 319, Mismatches: 20, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
145 75 0.24
146 159 0.50
147 69 0.22
148 16 0.05
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.29
Consensus pattern (147 bp):
AATATATTTTAAAAAATAAGATACGAAAAAAATACAAAGAAAGTGTCAAAATCAGGGTTATTTAT
TAAATTAATATAAAAAAAACATTACATAATACATTTGAAACATTTTTTGCTAAAATAATATAAAG
AAATAAAATACGAAAAT
Found at i:23018768 original size:146 final size:147
Alignment explanation
Indices: 23018600--23019050 Score: 689
Period size: 146 Copynumber: 3.1 Consensus size: 147
23018590 AAATAATATA
23018600 TTTTAAAATATATTATTTTCGTATTTTA-TTCTTTATATTATTTTAGCAAAAAATGTTTCAAATG
1 TTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGCAAAAAATGTTTCAAATG
*
23018664 TATTATGTAAGTGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTAT
66 TATTATCTAAGTGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTAT
23018729 TTTTTTCGTATCTTATT
131 TTTTTTCGTATCTTATT
* * * *
23018746 TTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATG
1 TTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGCAAAAAATGTTTCAAATG
* * * *
23018811 TATTATTTAAGT-ATTTTTTATATT-TTTTCAATAAATAACCCTGATTTT-AGCACTTTATTCGT
66 TATTATCTAAGTGTTTTTTTATATTAATTT-AATAAATAACCCTGATTTTGA-CACTTTCTTCGT
*
23018873 A-TTTTTTCGTATATTA-T
129 ATTTTTTTCGTATCTTATT
* * * *
23018890 TTTTAAAATATATTATTTTCATATTTTATTTTTTTATATTATTTTAGCAAAAAATATTTCAAACG
1 TTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGCAAAAAATGTTTCAAATG
* * *
23018955 TATTATCTAAATGTTTTTTTATATTAATTTAATAAATAATCTTGATTTTGACACTTTCTTCGTAT
66 TATTATCTAAGTGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTAT
23019020 TTTTTTCGTATCTTATT
131 TTTTTTCGTATCTTATT
23019037 TTTTAAAATATATT
1 TTTTAAAATATATT
23019051 TTATAGTGCT
Statistics
Matches: 272, Mismatches: 25, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
144 68 0.25
145 58 0.21
146 88 0.32
147 58 0.21
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.55
Consensus pattern (147 bp):
TTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGCAAAAAATGTTTCAAATG
TATTATCTAAGTGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTAT
TTTTTTCGTATCTTATT
Found at i:23019178 original size:18 final size:17
Alignment explanation
Indices: 23019155--23019198 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
23019145 TTTTATTATT
23019155 TTTTTTTTTGTTTTCAG
1 TTTTTTTTTGTTTTCAG
*
23019172 CTTTTTTTTGTTTTCAG
1 TTTTTTTTTGTTTTCAG
23019189 TGTTTTTTTT
1 T-TTTTTTTT
23019199 ACTGTTGCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.05, C:0.07, G:0.11, T:0.77
Consensus pattern (17 bp):
TTTTTTTTTGTTTTCAG
Found at i:23020853 original size:6 final size:6
Alignment explanation
Indices: 23020844--23020877 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
23020834 AGGAAGAGAA
*
23020844 GAAGGG GAAGGG GAAGGG GAAGGG AAAGGG GAAG
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAG
23020878 AGGAGGAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (6 bp):
GAAGGG
Found at i:23025322 original size:2 final size:2
Alignment explanation
Indices: 23025315--23025350 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
23025305 TATTGTTTTA
*
23025315 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23025351 TTTAAAAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:23040669 original size:24 final size:21
Alignment explanation
Indices: 23040633--23040676 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
23040623 ATATACAATA
*
23040633 TATAATAGATAATGACAAAAATT
1 TATAAAAGATAAT-A-AAAAATT
23040656 TATAAAAGAATAATAAAAAAT
1 TATAAAAG-ATAATAAAAAAT
23040677 ATTGGTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 8 0.42
24 5 0.26
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (21 bp):
TATAAAAGATAATAAAAAATT
Found at i:23040957 original size:17 final size:17
Alignment explanation
Indices: 23040933--23040970 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
23040923 ATAATAATAT
23040933 ATAGATAAAAA-ACATA
1 ATAGATAAAAAGACATA
23040949 ATAGTATAAAAATGACATA
1 ATAG-ATAAAAA-GACATA
23040968 ATA
1 ATA
23040971 TAAAATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.21
17 7 0.37
19 8 0.42
ACGTcount: A:0.63, C:0.05, G:0.08, T:0.24
Consensus pattern (17 bp):
ATAGATAAAAAGACATA
Found at i:23040991 original size:23 final size:23
Alignment explanation
Indices: 23040965--23041044 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 23
23040955 TAAAAATGAC
23040965 ATAATATAAAATAATTATAATAT
1 ATAATATAAAATAATTATAATAT
23040988 ATAATATGAAAGTATATATGTAT-ATA-
1 ATAATAT-AAA--ATA-AT-TATAATAT
23041014 AT-ATATATAAATAATTAATAAATAT
1 ATAATATA-AAATAATT-AT-AATAT
23041039 ATAATA
1 ATAATA
23041045 CAAGTAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 19
0.71 0.00 0.29
Matches are distributed among these distances:
21 1 0.02
22 4 0.09
23 10 0.22
24 7 0.15
25 8 0.17
26 8 0.17
27 5 0.11
28 3 0.07
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
ATAATATAAAATAATTATAATAT
Found at i:23041066 original size:11 final size:11
Alignment explanation
Indices: 23040965--23041090 Score: 55
Period size: 13 Copynumber: 10.5 Consensus size: 11
23040955 TAAAAATGAC
23040965 ATAATATAA-A
1 ATAATATAATA
23040975 ATAATTATAATA
1 ATAA-TATAATA
23040987 TATAATATGAA-A
1 -ATAATAT-AATA
*
23040999 GTATATATGTATATA
1 --ATA-ATATA-ATA
23041014 ATATATATAAATA
1 ATA-ATAT-AATA
23041027 ATTAATA-AATA
1 A-TAATATAATA
*
23041038 TATAATACAAGTA
1 -ATAATATAA-TA
23041051 A-AATATAATA
1 ATAATATAATA
23041061 ATAATATGTAAATA
1 ATAATA--T-AATA
*
23041075 ATAATGTAA-A
1 ATAATATAATA
23041085 ATAATA
1 ATAATA
23041091 ATGTTTTGTG
Statistics
Matches: 94, Mismatches: 5, Indels: 34
0.71 0.04 0.26
Matches are distributed among these distances:
10 13 0.14
11 26 0.28
12 10 0.11
13 28 0.30
14 16 0.17
15 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.36
Consensus pattern (11 bp):
ATAATATAATA
Found at i:23041091 original size:13 final size:12
Alignment explanation
Indices: 23041060--23041094 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
23041050 AAAATATAAT
23041060 AATAAT-ATGTA
1 AATAATAATGTA
23041071 AATAATAATGTAA
1 AATAATAATGT-A
23041084 AATAATAATGT
1 AATAATAATGT
23041095 TTTGTGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 6 0.27
12 4 0.18
13 12 0.55
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (12 bp):
AATAATAATGTA
Found at i:23041148 original size:16 final size:16
Alignment explanation
Indices: 23041118--23041150 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23041108 ATATATAATA
23041118 AATAACAATAATATAT
1 AATAACAATAATATAT
23041134 AATAA-AATAATTATAT
1 AATAACAATAA-TATAT
23041150 A
1 A
23041151 TAATATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAACAATAATATAT
Found at i:23041149 original size:18 final size:19
Alignment explanation
Indices: 23041106--23041164 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
23041096 TTGTGAAAAG
23041106 TAATATATAATAAATAACAA
1 TAATATATAAT-AATAACAA
*
23041126 TAATATATAATAA-AATAA
1 TAATATATAATAATAACAA
* *
23041144 TTATATATAAT-ATAAAAA
1 TAATATATAATAATAACAA
23041162 TAA
1 TAA
23041165 GATTAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 1 0.03
18 20 0.59
19 2 0.06
20 11 0.32
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (19 bp):
TAATATATAATAATAACAA
Found at i:23041158 original size:20 final size:20
Alignment explanation
Indices: 23041106--23041160 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
23041096 TTGTGAAAAG
23041106 TAATATATAATA-AATAACAA
1 TAATATATAATATAA-AACAA
*
23041126 TAATATAT-A-ATAAAATAA
1 TAATATATAATATAAAACAA
*
23041144 TTATATATAATATAAAA
1 TAATATATAATATAAAA
23041161 ATAAGATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 12 0.40
19 4 0.13
20 14 0.47
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
TAATATATAATATAAAACAA
Found at i:23043686 original size:206 final size:206
Alignment explanation
Indices: 23042800--23043692 Score: 1341
Period size: 206 Copynumber: 4.3 Consensus size: 206
23042790 ACCTGAGAGT
* * * * * * * *
23042800 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACTC-AGGAATGCCAAATCATCTTGGATCCA
1 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGG-ATGCCAAACCATCTTGGAT-CT
* * * * *
23042864 T--TTCAGTATAAATATCTGAAGGTTAGATCTGCTATGTATCTGC-CCTCCGTCGAATATGGAGA
64 TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCC-CTGTTGAA-GTGGAGA
* * * * * *
23042926 TGCTAGACTTAGATTTGTTCCCTGACACTACAGAGATGCCAAATCATCTTAGATTTGCTTCATCG
127 TGCCAGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCG
23042991 TAAACACGTGAAAAC
192 TAAACACGTGAAAAC
* * * *
23043006 CAAATCAGCTATGTGTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATC-TG
1 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTG
* * *
23043070 TTTCAGTATAAACATTTGAAGGTGAGATTTGCTATGTATCTGCTCTCC-GTTGAAGTGGAGATGC
66 CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTC-CCTGTTGAAGTGGAGATGC
* *
23043134 CAGACTTCGATTTGCTCACTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAA
130 CAGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAA
*
23043199 ACACGTGAAAGC
195 ACACGTGAAAAC
* * * * *
23043211 CAAATCAGTTATGTCTTCGGTTCGTTCCTTATTAGCACAAGGATGCTAAACCATCTTGGATCTTA
1 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTG
*
23043276 CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCT-TTGAAGTGGAGATAC
66 CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCT-CCCTGTTGAAGTGGAGATGC
23043340 CAGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAA
130 CAGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAA
23043405 ACACGTGAAAAC
195 ACACGTGAAAAC
23043417 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTG
1 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTG
23043482 CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCTGTTGAAGTGGAGATGCC
66 CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCTGTTGAAGTGGAGATGCC
* *
23043547 AAACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAA
131 AGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAA
*
23043612 TACGTGAAAAC
196 CACGTGAAAAC
23043623 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTG
1 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTG
23043688 CTTCA
66 CTTCA
23043693 ACCCGATCTG
Statistics
Matches: 636, Mismatches: 42, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
204 1 0.00
205 139 0.22
206 489 0.77
207 6 0.01
208 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (206 bp):
CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTG
CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCTGTTGAAGTGGAGATGCC
AGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAA
CACGTGAAAAC
Found at i:23051812 original size:14 final size:14
Alignment explanation
Indices: 23051789--23051818 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23051779 ATTCTAGTTC
23051789 AACTTCATTTAGAA
1 AACTTCATTTAGAA
*
23051803 AACTTTATTTAGAA
1 AACTTCATTTAGAA
23051817 AA
1 AA
23051819 AGAATATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (14 bp):
AACTTCATTTAGAA
Found at i:23055885 original size:17 final size:19
Alignment explanation
Indices: 23055865--23055904 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
23055855 ATAATAATAT
23055865 ATAG-ATAAAAAA-ACATA
1 ATAGTATAAAAAAGACATA
23055882 ATAGTATAAAAAATGACATA
1 ATAGTATAAAAAA-GACATA
23055902 ATA
1 ATA
23055905 TAAAATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 8 0.40
20 8 0.40
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (19 bp):
ATAGTATAAAAAAGACATA
Found at i:23055925 original size:23 final size:23
Alignment explanation
Indices: 23055899--23055978 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 23
23055889 AAAAAATGAC
23055899 ATAATATAAAATAATTATAATAT
1 ATAATATAAAATAATTATAATAT
23055922 ATAATATGAAAGTATATATGTAT-ATA-
1 ATAATAT-AAA--ATA-AT-TATAATAT
23055948 AT-ATATATAAATAATTAATAAATAT
1 ATAATATA-AAATAATT-AT-AATAT
23055973 ATAATA
1 ATAATA
23055979 CAAGTAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 19
0.71 0.00 0.29
Matches are distributed among these distances:
21 1 0.02
22 4 0.09
23 10 0.22
24 7 0.15
25 8 0.17
26 8 0.17
27 5 0.11
28 3 0.07
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
ATAATATAAAATAATTATAATAT
Found at i:23056000 original size:11 final size:11
Alignment explanation
Indices: 23055899--23056001 Score: 52
Period size: 13 Copynumber: 8.6 Consensus size: 11
23055889 AAAAAATGAC
23055899 ATAATATAA-A
1 ATAATATAATA
23055909 ATAATTATAATA
1 ATAA-TATAATA
23055921 TATAATATGAA-A
1 -ATAATAT-AATA
*
23055933 GTATATATGTATATA
1 --ATA-ATATA-ATA
23055948 ATATATATAAATA
1 ATA-ATAT-AATA
23055961 ATTAATA-AATA
1 A-TAATATAATA
*
23055972 TATAATACAAGTA
1 -ATAATATAA-TA
23055985 A-AATATAATA
1 ATAATATAATA
23055995 ATAATAT
1 ATAATAT
23056002 GTAAATAAGA
Statistics
Matches: 76, Mismatches: 3, Indels: 27
0.72 0.03 0.25
Matches are distributed among these distances:
10 7 0.09
11 25 0.33
12 9 0.12
13 27 0.36
14 7 0.09
15 1 0.01
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.37
Consensus pattern (11 bp):
ATAATATAATA
Found at i:23056082 original size:16 final size:16
Alignment explanation
Indices: 23056052--23056084 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23056042 ATATATAATA
23056052 AATAACAATAATATAT
1 AATAACAATAATATAT
23056068 AATAA-AATAATTATAT
1 AATAACAATAA-TATAT
23056084 A
1 A
23056085 TAATATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAACAATAATATAT
Found at i:23056083 original size:18 final size:19
Alignment explanation
Indices: 23056040--23056098 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
23056030 TTGTGAAAAG
23056040 TAATATATAATAAATAACAA
1 TAATATATAAT-AATAACAA
*
23056060 TAATATATAATAA-AATAA
1 TAATATATAATAATAACAA
* *
23056078 TTATATATAAT-ATAAAAA
1 TAATATATAATAATAACAA
23056096 TAA
1 TAA
23056099 GATTAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 1 0.03
18 20 0.59
19 2 0.06
20 11 0.32
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (19 bp):
TAATATATAATAATAACAA
Found at i:23056092 original size:20 final size:20
Alignment explanation
Indices: 23056040--23056094 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
23056030 TTGTGAAAAG
23056040 TAATATATAATA-AATAACAA
1 TAATATATAATATAA-AACAA
*
23056060 TAATATAT-A-ATAAAATAA
1 TAATATATAATATAAAACAA
*
23056078 TTATATATAATATAAAA
1 TAATATATAATATAAAA
23056095 ATAAGATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 12 0.40
19 4 0.13
20 14 0.47
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
TAATATATAATATAAAACAA
Found at i:23056550 original size:35 final size:35
Alignment explanation
Indices: 23056500--23056587 Score: 167
Period size: 35 Copynumber: 2.5 Consensus size: 35
23056490 CCTTTTGTTT
23056500 AAACGACGCCGTTTTAATGCTTATTGAATTAAGCA
1 AAACGACGCCGTTTTAATGCTTATTGAATTAAGCA
*
23056535 AAACGACGCCATTTTAATGCTTATTGAATTAAGCA
1 AAACGACGCCGTTTTAATGCTTATTGAATTAAGCA
23056570 AAACGACGCCGTTTTAAT
1 AAACGACGCCGTTTTAAT
23056588 AAAGGTATAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 51 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (35 bp):
AAACGACGCCGTTTTAATGCTTATTGAATTAAGCA
Found at i:23059221 original size:141 final size:134
Alignment explanation
Indices: 23058964--23059245 Score: 402
Period size: 141 Copynumber: 2.1 Consensus size: 134
23058954 CTCAGGTTAT
*
23058964 ATTTTAGTCACATATGTTTGAAATATTACGTTTTAGTCACTTGGTGTTGTAACATTTTATTCACT
1 ATTTTAGTCACATATGTTTGAAATATTACGTTTTAGTCACTTGGTGTTGTAACATTTTAGTCACT
* * * * * *
23059029 GAATCGTTAATTTCTGTTAACAGTGTAACAGTAAGTTGACGTGGCACGTTAAATCATCATTTCAA
66 GAATCGTTAATTGCCGTTAACAGTGTAACAGTAAGCTGACATAGCAAGTTAAATCATCATTTCAA
23059094 ACAA
131 ACAA
* *
23059098 ATTTTAGTCACTTATGTTTGAAATGTTACGTTTTAGTCACTTGCATTATCGTGTTGTAACATTTT
1 ATTTTAGTCACATATGTTTGAAATATTACGTTTTAGTCACTTG-------GTGTTGTAACATTTT
*
23059163 AGTCACTGAGTCGTTAATTGCCGTTAACAGTGTAACAGTAAGCTGACATAGCAAGTTAAATCATC
59 AGTCACTGAATCGTTAATTGCCGTTAACAGTGTAACAGTAAGCTGACATAGCAAGTTAAATCATC
23059228 ATTTCAAACAA
124 ATTTCAAACAA
*
23059239 TTTTTAG
1 ATTTTAG
23059246 GTTAAATTAT
Statistics
Matches: 130, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
134 41 0.32
141 89 0.68
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (134 bp):
ATTTTAGTCACATATGTTTGAAATATTACGTTTTAGTCACTTGGTGTTGTAACATTTTAGTCACT
GAATCGTTAATTGCCGTTAACAGTGTAACAGTAAGCTGACATAGCAAGTTAAATCATCATTTCAA
ACAA
Found at i:23067608 original size:25 final size:25
Alignment explanation
Indices: 23067580--23067642 Score: 92
Period size: 25 Copynumber: 2.5 Consensus size: 25
23067570 CTTCTTTTAG
*
23067580 TTAAACTCT-AGTTTTAGTTTCTCAA
1 TTAAACTCTGA-TTTTAATTTCTCAA
*
23067605 TTAAACTCTGATTTTAATTTCTCAC
1 TTAAACTCTGATTTTAATTTCTCAA
23067630 TTAAACTCTGATT
1 TTAAACTCTGATT
23067643 AACCTAGTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 34 0.97
26 1 0.03
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.48
Consensus pattern (25 bp):
TTAAACTCTGATTTTAATTTCTCAA
Found at i:23068185 original size:22 final size:23
Alignment explanation
Indices: 23068142--23068193 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
23068132 GAAATGGTAG
* *
23068142 CAAAATAGTGAAAAAAATAACAA
1 CAAAACAGTGAAAAAAACAACAA
*
23068165 CAAAACAGT-AAAAAAGCAACAA
1 CAAAACAGTGAAAAAAACAACAA
*
23068187 GAAAACA
1 CAAAACA
23068194 TTTGTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 17 0.68
23 8 0.32
ACGTcount: A:0.69, C:0.13, G:0.10, T:0.08
Consensus pattern (23 bp):
CAAAACAGTGAAAAAAACAACAA
Found at i:23072225 original size:5 final size:5
Alignment explanation
Indices: 23072215--23072248 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
23072205 AAAACCAGAA
23072215 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
23072249 CCCTAAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:23073810 original size:46 final size:44
Alignment explanation
Indices: 23073751--23073865 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
23073741 ACAGGACAGA
* *
23073751 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
23073797 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
23073841 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
23073866 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:23073846 original size:44 final size:45
Alignment explanation
Indices: 23073751--23073884 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
23073741 ACAGGACAGA
* *
23073751 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
23073797 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
23073841 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
23073885 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:23079963 original size:46 final size:44
Alignment explanation
Indices: 23079904--23080018 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
23079894 ACAGGACAGA
* *
23079904 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
23079950 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
23079994 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
23080019 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:23079999 original size:44 final size:45
Alignment explanation
Indices: 23079904--23080037 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
23079894 ACAGGACAGA
* *
23079904 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
23079950 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
23079994 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
23080038 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:23083878 original size:46 final size:44
Alignment explanation
Indices: 23083819--23083933 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
23083809 ACAGGACAGA
* *
23083819 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
23083865 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
23083909 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
23083934 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:23083914 original size:44 final size:45
Alignment explanation
Indices: 23083819--23083952 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
23083809 ACAGGACAGA
* *
23083819 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
23083865 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
23083909 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
23083953 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:23088838 original size:46 final size:44
Alignment explanation
Indices: 23088734--23088841 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
23088724 TGTCTTTGAC
** * * *
23088734 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
23088778 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
23088824 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
23088842 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:23092580 original size:46 final size:44
Alignment explanation
Indices: 23092476--23092583 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
23092466 TGTCTTTGAC
** * * *
23092476 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
23092520 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
23092566 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
23092584 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:23099937 original size:46 final size:44
Alignment explanation
Indices: 23099836--23099939 Score: 136
Period size: 44 Copynumber: 2.3 Consensus size: 44
23099826 TGTCTTTGAC
* * * * *
23099836 ATGGACTTACATGAATTATTCTTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGATCAATCCTGTCTCCAAAGCCATATATAAT
*
23099880 ATGGACTTACATGGATCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGATCAATCCTGTCTCCAAAGCCATA--TATAAT
23099926 ATGGACTTACATGG
1 ATGGACTTACATGG
23099940 CTCATTTCTG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 33 0.63
46 19 0.37
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (44 bp):
ATGGACTTACATGGATCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:23107426 original size:35 final size:35
Alignment explanation
Indices: 23107361--23107428 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
23107351 TTGTCTATTC
*
23107361 TATTTTCTTTTTCTGAATATAAACATACTTTTCTT
1 TATTTTCTTTTTCTGAATATAAAAATACTTTTCTT
**
23107396 TATTTTCTTTTTCTTTATA-AAAAATAACTTTTC
1 TATTTTCTTTTTCTGAATATAAAAAT-ACTTTTC
23107429 AAAATATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 5 0.17
35 24 0.83
ACGTcount: A:0.28, C:0.13, G:0.01, T:0.57
Consensus pattern (35 bp):
TATTTTCTTTTTCTGAATATAAAAATACTTTTCTT
Found at i:23108207 original size:3 final size:3
Alignment explanation
Indices: 23108172--23108332 Score: 70
Period size: 3 Copynumber: 55.0 Consensus size: 3
23108162 TATTAACTTT
* **
23108172 TTA TT- TTA TTT TTA TT- TTCA TTA TTA GCA -TA TTA TTAA TT- TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TT-A TTA TTA
* * * * * *
23108215 TTA ATA -TA TTA TTA TCT- TCTA TTT TTG TTG TTG TTA TTA TTA TTT
1 TTA TTA TTA TTA TTA T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * **
23108260 TTA TCA TTA CTA TTA -TA TTTA TGA TTA TTG TTA GCA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
23108304 TTA TTA CTA TTA TTA TT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23108333 CCTACATACT
Statistics
Matches: 120, Mismatches: 25, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
2 15 0.12
3 96 0.80
4 9 0.08
ACGTcount: A:0.27, C:0.05, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:23108308 original size:20 final size:20
Alignment explanation
Indices: 23108291--23108329 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23108281 TGATTATTGT
23108291 TAGCATTATTTTATTATTAC
1 TAGCATTATTTTATTATTAC
**
23108311 TATTATTATTTTATTATTA
1 TAGCATTATTTTATTATTA
23108330 TTACCTACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (20 bp):
TAGCATTATTTTATTATTAC
Found at i:23108315 original size:17 final size:17
Alignment explanation
Indices: 23108295--23108332 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
23108285 TATTGTTAGC
23108295 ATTATT-TTATTATTACT
1 ATTATTATT-TTATTACT
*
23108312 ATTATTATTTTATTATT
1 ATTATTATTTTATTACT
23108329 ATTA
1 ATTA
23108333 CCTACATACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTATTATTTTATTACT
Found at i:23108417 original size:21 final size:23
Alignment explanation
Indices: 23108392--23108437 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
23108382 ATTAATATCA
*
23108392 TTATTAACGTATTA-AATT-TTT
1 TTATTAACATATTATAATTATTT
*
23108413 TTATTAATATATTATAATTATTT
1 TTATTAACATATTATAATTATTT
23108436 TT
1 TT
23108438 TCATTATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 12 0.57
22 4 0.19
23 5 0.24
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (23 bp):
TTATTAACATATTATAATTATTT
Found at i:23108435 original size:25 final size:26
Alignment explanation
Indices: 23108407--23108462 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
23108397 AACGTATTAA
*
23108407 ATTTTTTTATTAATA-TATTATAATT
1 ATTTTTTCATTAATATTATTATAATT
* * *
23108432 ATTTTTTCATTATTATTATTGTCATT
1 ATTTTTTCATTAATATTATTATAATT
23108458 ATTTT
1 ATTTT
23108463 AAACCTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.66
Consensus pattern (26 bp):
ATTTTTTCATTAATATTATTATAATT
Found at i:23108986 original size:15 final size:15
Alignment explanation
Indices: 23108957--23109022 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
23108947 TGTATTTACT
*
23108957 TAATATATAAGTAAAA
1 TAATA-ATAATTAAAA
*
23108973 TAATAATAATTAAAG
1 TAATAATAATTAAAA
* *
23108988 T-ATACTATATTAATA
1 TAATAATA-ATTAAAA
23109003 TAATAAT-A-TAAAA
1 TAATAATAATTAAAA
23109016 T-ATAATA
1 TAATAATA
23109023 TAATCAATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
12 5 0.12
13 5 0.12
14 6 0.15
15 15 0.38
16 9 0.22
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (15 bp):
TAATAATAATTAAAA
Found at i:23109133 original size:15 final size:15
Alignment explanation
Indices: 23109113--23109142 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23109103 TATTATTAAG
*
23109113 AAAGGAAATAAAGAA
1 AAAGGAAAGAAAGAA
23109128 AAAGGAAAGAAAGAA
1 AAAGGAAAGAAAGAA
23109143 GGCCACGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.03
Consensus pattern (15 bp):
AAAGGAAAGAAAGAA
Done.