Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 70 of 335
Found at i:24029457 original size:51 final size:51
Alignment explanation
Indices: 24029369--24029489 Score: 179
Period size: 51 Copynumber: 2.4 Consensus size: 51
24029359 ATCACATTTA
* * **
24029369 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATTGCTTG
1 TCACTTGTCACTGATCAGATAAATGTAACTAAAGCTACCACTTATCACTTG
* *
24029420 TCACTTGTCACTGATCAGATAAATGTAACTGAGGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAATGTAACTAAAGCTACCACTTATCACTTG
*
24029471 TCCCTTGTCACTGATCAGA
1 TCACTTGTCACTGATCAGA
24029490 AGTACTCAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (51 bp):
TCACTTGTCACTGATCAGATAAATGTAACTAAAGCTACCACTTATCACTTG
Found at i:24038383 original size:25 final size:25
Alignment explanation
Indices: 24038355--24038405 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
24038345 TGAAAATGAA
*
24038355 TGCCTTTTGCTGTACCTTTGATGTT
1 TGCCCTTTGCTGTACCTTTGATGTT
24038380 TGCCCTTTGCTGTACCTTTGATGTT
1 TGCCCTTTGCTGTACCTTTGATGTT
24038405 T
1 T
24038406 ACTTGACAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.08, C:0.22, G:0.20, T:0.51
Consensus pattern (25 bp):
TGCCCTTTGCTGTACCTTTGATGTT
Found at i:24038528 original size:7 final size:7
Alignment explanation
Indices: 24038516--24038540 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24038506 CCAAAGCATC
24038516 AAAGAGA
1 AAAGAGA
24038523 AAAGAGA
1 AAAGAGA
24038530 AAAGAGA
1 AAAGAGA
24038537 AAAG
1 AAAG
24038541 GGTAAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (7 bp):
AAAGAGA
Found at i:24049275 original size:15 final size:15
Alignment explanation
Indices: 24049255--24049287 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
24049245 TAAAGAGTTT
24049255 TAAGTAGATTTTGAG
1 TAAGTAGATTTTGAG
24049270 TAAGTAGATTTTGAG
1 TAAGTAGATTTTGAG
24049285 TAA
1 TAA
24049288 TGGAGTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.39
Consensus pattern (15 bp):
TAAGTAGATTTTGAG
Found at i:24065385 original size:2 final size:2
Alignment explanation
Indices: 24065375--24065406 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
24065365 ATCATTAGAT
*
24065375 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24065407 ACATAAGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:24065835 original size:15 final size:16
Alignment explanation
Indices: 24065815--24065845 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24065805 TAATGTAAAG
24065815 TGAATTG-AAATATAT
1 TGAATTGAAAATATAT
24065830 TGAATTGAAAATATAT
1 TGAATTGAAAATATAT
24065846 ATGATTAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (16 bp):
TGAATTGAAAATATAT
Found at i:24066279 original size:18 final size:18
Alignment explanation
Indices: 24066258--24066292 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24066248 TAACTGTTAC
24066258 TGAATAAATGATTATTAT
1 TGAATAAATGATTATTAT
* *
24066276 TGAATGATTGATTATTA
1 TGAATAAATGATTATTA
24066293 CTGATGACTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (18 bp):
TGAATAAATGATTATTAT
Found at i:24068458 original size:13 final size:13
Alignment explanation
Indices: 24068440--24068481 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
24068430 AAACCCTAAA
*
24068440 TTTTCTCCTTTCT
1 TTTTCTTCTTTCT
24068453 TTTTCTTTCTTTCT
1 TTTTC-TTCTTTCT
*
24068467 TTTTATTCTTTCT
1 TTTTCTTCTTTCT
24068480 TT
1 TT
24068482 CCCCTGTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTCTTCTTTCT
Found at i:24068594 original size:29 final size:27
Alignment explanation
Indices: 24068526--24068594 Score: 70
Period size: 29 Copynumber: 2.5 Consensus size: 27
24068516 GTTTTTATTG
* *
24068526 TTATTATAATATAATATAATACATGTA
1 TTATTATTATATAATAAAATACATGTA
24068553 -TATT-TTACTTATAATAAGAAATACATGTA
1 TTATTATTA--TATAAT-A-AAATACATGTA
24068582 TTATTATTATATA
1 TTATTATTATATA
24068595 CATATAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
25 2 0.06
26 4 0.12
27 6 0.18
28 1 0.03
29 14 0.41
30 4 0.12
31 3 0.09
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (27 bp):
TTATTATTATATAATAAAATACATGTA
Found at i:24068597 original size:19 final size:19
Alignment explanation
Indices: 24068573--24068627 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
24068563 ATAATAAGAA
24068573 ATACATGTATTATTATTAT
1 ATACATGTATTATTATTAT
* *
24068592 ATACATATAATTATTATTTTT
1 ATACATGT-ATTATTA-TTAT
*
24068613 ACACATGTATT-TTAT
1 ATACATGTATTATTAT
24068628 CATTACTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.03
19 10 0.33
20 10 0.33
21 9 0.30
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (19 bp):
ATACATGTATTATTATTAT
Found at i:24073394 original size:15 final size:15
Alignment explanation
Indices: 24073345--24073394 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
24073335 TATTTGATAA
24073345 ATTGAAAAAATAAAT
1 ATTGAAAAAATAAAT
* **
24073360 ATTTAAAAAATATCT
1 ATTGAAAAAATAAAT
* *
24073375 GTTGAAAAAGTAAAT
1 ATTGAAAAAATAAAT
24073390 ATTGA
1 ATTGA
24073395 GAGTGTTGAA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (15 bp):
ATTGAAAAAATAAAT
Found at i:24074953 original size:20 final size:21
Alignment explanation
Indices: 24074930--24074974 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
24074920 TTGGGGATGG
*
24074930 GGTTTAGGA-ATTGGGTTTAA
1 GGTTTAGGAGATTGGGTTCAA
*
24074950 GG-TTAGGAGTTTGGGTTCAA
1 GGTTTAGGAGATTGGGTTCAA
24074970 GGTTT
1 GGTTT
24074975 GATATTTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 6 0.29
20 13 0.62
21 2 0.10
ACGTcount: A:0.20, C:0.02, G:0.38, T:0.40
Consensus pattern (21 bp):
GGTTTAGGAGATTGGGTTCAA
Found at i:24077255 original size:11 final size:11
Alignment explanation
Indices: 24077208--24077286 Score: 61
Period size: 11 Copynumber: 7.3 Consensus size: 11
24077198 TTATACTTTG
*
24077208 AAATAACAATA
1 AAATAATAATA
* **
24077219 AAATAGTGGTA
1 AAATAATAATA
*
24077230 AAATAGTAA-A
1 AAATAATAATA
* *
24077240 TAATAATAACA
1 AAATAATAATA
*
24077251 AAATAATAGTA
1 AAATAATAATA
*
24077262 ATATAATAATA
1 AAATAATAATA
*
24077273 AAATAACAATA
1 AAATAATAATA
24077284 AAA
1 AAA
24077287 CAGTTATAAA
Statistics
Matches: 52, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
10 8 0.15
11 44 0.85
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.24
Consensus pattern (11 bp):
AAATAATAATA
Found at i:24077610 original size:19 final size:19
Alignment explanation
Indices: 24077576--24077620 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
24077566 TAATAATTTT
*
24077576 ATTAAATTAATTTTTTGTA
1 ATTAAATTAATTTTTTATA
24077595 ATTAAATT-ATTGTTTTATA
1 ATTAAATTAATT-TTTTATA
24077614 ATATAAA
1 AT-TAAA
24077621 GGTAAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 3 0.13
19 16 0.70
20 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.53
Consensus pattern (19 bp):
ATTAAATTAATTTTTTATA
Found at i:24078019 original size:15 final size:16
Alignment explanation
Indices: 24077999--24078031 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
24077989 TATATATTTT
24077999 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
24078014 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
24078031 T
1 T
24078032 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:24078104 original size:21 final size:22
Alignment explanation
Indices: 24078078--24078136 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
24078068 GTTTTAAGAA
*
24078078 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
24078099 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
24078121 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
24078137 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:24078151 original size:26 final size:24
Alignment explanation
Indices: 24078107--24078156 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
24078097 ATTTGTTTTA
*
24078107 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
24078131 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
24078157 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:24079783 original size:25 final size:25
Alignment explanation
Indices: 24079734--24079810 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
24079724 ATATTAAATT
* *
24079734 AATATAATAAACATAAAGGAA-ATAA
1 AATAAAATAAA-ATAAAGAAACATAA
24079759 AATAAAATAAAATAAAGAAACATAA
1 AATAAAATAAAATAAAGAAACATAA
* * **
24079784 GTATAGAA-AAAGGAAAGAAACATAA
1 -AATAAAATAAAATAAAGAAACATAA
24079809 AA
1 AA
24079811 CGAAACAGTG
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
24 9 0.21
25 29 0.67
26 5 0.12
ACGTcount: A:0.70, C:0.04, G:0.10, T:0.16
Consensus pattern (25 bp):
AATAAAATAAAATAAAGAAACATAA
Found at i:24082445 original size:29 final size:29
Alignment explanation
Indices: 24082413--24082485 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
24082403 TGATTGTTTA
* *
24082413 ATTATAAAATATATTG-TTATTGTTATTAT
1 ATTATAAAATAAATTGATTA-TATTATTAT
*
24082442 ATTATAAATTAAATTGATTATATTATTAT
1 ATTATAAAATAAATTGATTATATTATTAT
*
24082471 ATTATGAAATAAATT
1 ATTATAAAATAAATT
24082486 AAGAAAAGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 35 0.92
30 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (29 bp):
ATTATAAAATAAATTGATTATATTATTAT
Found at i:24082585 original size:33 final size:31
Alignment explanation
Indices: 24082543--24082614 Score: 83
Period size: 33 Copynumber: 2.3 Consensus size: 31
24082533 AAATGAGTAC
*
24082543 ATTTGTATTATTTA-TATATAATTAGTAAAAAG
1 ATTTTTATTATTTATTAT-TAATTAG-AAAAAG
* *
24082575 ATGTTTTATTATTTATTATTAGTTAGGAAAAG
1 AT-TTTTATTATTTATTATTAATTAGAAAAAG
24082607 ATTTTTAT
1 ATTTTTAT
24082615 ATGATAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 6 0.17
32 9 0.26
33 17 0.49
34 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (31 bp):
ATTTTTATTATTTATTATTAATTAGAAAAAG
Found at i:24082596 original size:29 final size:30
Alignment explanation
Indices: 24082554--24082614 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 30
24082544 TTTGTATTAT
24082554 TTATATATAATTAG-TA-AAAAGATGTTTTA
1 TTATATATAATTAGTTAGAAAAGAT-TTTTA
* *
24082583 TTATTTATTATTAGTTAGGAAAAGATTTTTA
1 TTATATATAATTAGTTA-GAAAAGATTTTTA
24082614 T
1 T
24082615 ATGATAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.44
30 2 0.07
31 6 0.22
32 7 0.26
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.49
Consensus pattern (30 bp):
TTATATATAATTAGTTAGAAAAGATTTTTA
Found at i:24083846 original size:44 final size:44
Alignment explanation
Indices: 24083797--24083888 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
24083787 TGTTCAGGGA
* * *
24083797 TACTTCGACTTTGAGTTGATGAGGCA-C-TGTAAGTGTCTTACTGT
1 TACTTCGACTTCGAGTTGATAAGGCATCTTGT--GTGTCGTACTGT
24083841 TACTTCGACTTCGAGTTGATAAGGCATCTTGTGTGTCGTACTGT
1 TACTTCGACTTCGAGTTGATAAGGCATCTTGTGTGTCGTACTGT
24083885 TACT
1 TACT
24083889 GTTACTTTGG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 39 0.91
45 1 0.02
46 3 0.07
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (44 bp):
TACTTCGACTTCGAGTTGATAAGGCATCTTGTGTGTCGTACTGT
Found at i:24091982 original size:21 final size:21
Alignment explanation
Indices: 24091933--24091986 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
24091923 TTAAGTTTGG
24091933 TTTATTTCAATTGAGTTTACCT
1 TTTATTTCAATTGAGTTTA-CT
* *
24091955 ATTATTTCAATATGTGTTT-CT
1 TTTATTTCAAT-TGAGTTTACT
24091976 TTTATTTCAAT
1 TTTATTTCAAT
24091987 GTGCCAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.43
22 10 0.36
23 6 0.21
ACGTcount: A:0.24, C:0.11, G:0.07, T:0.57
Consensus pattern (21 bp):
TTTATTTCAATTGAGTTTACT
Found at i:24099337 original size:99 final size:98
Alignment explanation
Indices: 24099183--24099374 Score: 246
Period size: 99 Copynumber: 1.9 Consensus size: 98
24099173 CCTTTGAGTC
* * * *
24099183 AGTTTGTTGATATAACATTGTGTGATTCTTGCATTTCCTTTTTCTGTTGATAGTATGCTGTTTGT
1 AGTTTGTTGATATAACATTGTATGATTATTGCAATTCCTTTTTCTGTTGAAAGTATGCTGTTTGT
*
24099248 GCATTAAATAAAAAAGGTTAAAATTTAAAGTGTG
66 GCATTAAAGAAAAAA-GTTAAAATTTAAAGTGTG
* *
24099282 AGTTTGTTGATGTAACATCTG-ATGATTATTGCAATTCTTTGTTGTCT-TT-AAAGTATGCTGTT
1 AGTTTGTTGATATAACAT-TGTATGATTATTGCAATTCCTT-TT-TCTGTTGAAAGTATGCTGTT
* *
24099344 TGTGCATTAAAGAAACAAGTTGAAATTTAAA
63 TGTGCATTAAAGAAAAAAGTTAAAATTTAAA
24099375 TTTTTGTTAT
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
98 12 0.15
99 60 0.74
100 6 0.07
101 3 0.04
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (98 bp):
AGTTTGTTGATATAACATTGTATGATTATTGCAATTCCTTTTTCTGTTGAAAGTATGCTGTTTGT
GCATTAAAGAAAAAAGTTAAAATTTAAAGTGTG
Found at i:24106415 original size:19 final size:21
Alignment explanation
Indices: 24106391--24106431 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
24106381 ACTTTTTTTT
24106391 TATTTAAA-AATAAA-TCAAA
1 TATTTAAATAATAAACTCAAA
*
24106410 TATTTAAATACTAAACTCAAA
1 TATTTAAATAATAAACTCAAA
24106431 T
1 T
24106432 GGTCCATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 5 0.26
21 6 0.32
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (21 bp):
TATTTAAATAATAAACTCAAA
Found at i:24108349 original size:19 final size:19
Alignment explanation
Indices: 24108325--24108361 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
24108315 AAGAAATAGG
*
24108325 AAAAAAATTAAGCCCCTAT
1 AAAAAAACTAAGCCCCTAT
*
24108344 AAAAAAACTAATCCCCTA
1 AAAAAAACTAAGCCCCTA
24108362 ACTTTATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.24, G:0.03, T:0.19
Consensus pattern (19 bp):
AAAAAAACTAAGCCCCTAT
Found at i:24108850 original size:15 final size:15
Alignment explanation
Indices: 24108830--24108862 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
24108820 TTGATAATGT
24108830 TGATGATGAGGCTGA
1 TGATGATGAGGCTGA
*
24108845 TGATGATGAGGTTGA
1 TGATGATGAGGCTGA
24108860 TGA
1 TGA
24108863 ATCGAATGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.03, G:0.39, T:0.30
Consensus pattern (15 bp):
TGATGATGAGGCTGA
Found at i:24110403 original size:20 final size:21
Alignment explanation
Indices: 24110371--24110409 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
24110361 TCTTTCATAA
*
24110371 TAATTTATTTAATTTTATTCT
1 TAATTTATTTAATATTATTCT
24110392 TAATTT-TTTAATATTATT
1 TAATTTATTTAATATTATT
24110410 TTTTTGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (21 bp):
TAATTTATTTAATATTATTCT
Found at i:24112890 original size:22 final size:23
Alignment explanation
Indices: 24112865--24112907 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
24112855 GGCCAAATTT
* *
24112865 AAATATATTTGA-ACTTAAATCA
1 AAATAAATTTGAGAATTAAATCA
24112887 AAATAAATTTGAGAATTAAAT
1 AAATAAATTTGAGAATTAAAT
24112908 ATTGATAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (23 bp):
AAATAAATTTGAGAATTAAATCA
Found at i:24114019 original size:32 final size:32
Alignment explanation
Indices: 24113981--24114044 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
24113971 AAGATAATAT
24113981 TATTTCATCTTTTTTCATTATTTTAAAATTAA
1 TATTTCATCTTTTTTCATTATTTTAAAATTAA
24114013 TATTTCATCTTTTTTCATTATTTTAAAATTAA
1 TATTTCATCTTTTTTCATTATTTTAAAATTAA
24114045 CCCTCAAGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (32 bp):
TATTTCATCTTTTTTCATTATTTTAAAATTAA
Found at i:24124706 original size:7 final size:7
Alignment explanation
Indices: 24124694--24124729 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
24124684 CGATTATCAT
24124694 CCAAGTC
1 CCAAGTC
24124701 CCAAGTC
1 CCAAGTC
24124708 CCAAGTC
1 CCAAGTC
24124715 CCAAGTC
1 CCAAGTC
24124722 CCAAGTC
1 CCAAGTC
24124729 C
1 C
24124730 GAGGGAATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.44, G:0.14, T:0.14
Consensus pattern (7 bp):
CCAAGTC
Found at i:24131245 original size:21 final size:21
Alignment explanation
Indices: 24131193--24131247 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
24131183 TTGGGAAAGG
* *
24131193 ATATATTAACAGATCTGAACA
1 ATATATTAATAGATCTAAACA
24131214 ATATATTAATAGATCTAAACA
1 ATATATTAATAGATCTAAACA
24131235 ATA-ATTAAATAGA
1 ATATATT-AATAGA
24131248 CTGCTATCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 3 0.10
21 28 0.90
ACGTcount: A:0.53, C:0.09, G:0.07, T:0.31
Consensus pattern (21 bp):
ATATATTAATAGATCTAAACA
Found at i:24139771 original size:31 final size:31
Alignment explanation
Indices: 24139736--24139810 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
24139726 TATTTCTTTA
*
24139736 CATATGTATAATTGAATCAAAATCAAAGTTT
1 CATATGTATAATTGAATCAAAATCAAAATTT
* * * * *
24139767 CATATATACATTTGAATTACAATCAAAATTT
1 CATATGTATAATTGAATCAAAATCAAAATTT
24139798 CATATGTATAATT
1 CATATGTATAATT
24139811 ACACCAAATC
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.39
Consensus pattern (31 bp):
CATATGTATAATTGAATCAAAATCAAAATTT
Found at i:24142906 original size:26 final size:26
Alignment explanation
Indices: 24142871--24142924 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
24142861 CCGCTATATA
24142871 ATAAAAATTTGAGTAATTTCTACATT
1 ATAAAAATTTGAGTAATTTCTACATT
* *
24142897 ATAAAAATTTGAGTAATTTTTATATT
1 ATAAAAATTTGAGTAATTTCTACATT
24142923 AT
1 AT
24142925 TGTTAGTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.46
Consensus pattern (26 bp):
ATAAAAATTTGAGTAATTTCTACATT
Found at i:24145447 original size:23 final size:23
Alignment explanation
Indices: 24145399--24145447 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
24145389 AAATTTAAAT
* * *
24145399 TTCGAGTTAATCGAATTGAGTTA
1 TTCGAGTCAATCGAATTAAGTAA
24145422 TTCGAGTCAACTCGAA-TAAGTAA
1 TTCGAGTCAA-TCGAATTAAGTAA
24145445 TTC
1 TTC
24145448 AAGTTTCGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (23 bp):
TTCGAGTCAATCGAATTAAGTAA
Found at i:24145616 original size:19 final size:19
Alignment explanation
Indices: 24145571--24145621 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
24145561 AACTTATAAA
*
24145571 AAAATATTAAAATAATTTTT
1 AAAAT-TTAAAATAATTTTG
*
24145591 AATATTTAAAAT-ATTTATG
1 AAAATTTAAAATAATTT-TG
24145610 AAAATTTCAAAA
1 AAAATTT-AAAA
24145622 CTTATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 4 0.15
19 14 0.54
20 8 0.31
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATTTAAAATAATTTTG
Found at i:24147001 original size:5 final size:5
Alignment explanation
Indices: 24146993--24147022 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
24146983 TGGTGTTGTT
24146993 GGGTC GGGTC GGGTC GGGTC GGGTC GGGTC
1 GGGTC GGGTC GGGTC GGGTC GGGTC GGGTC
24147023 ATCTTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (5 bp):
GGGTC
Found at i:24154258 original size:23 final size:23
Alignment explanation
Indices: 24154232--24154277 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
24154222 TGTGAAGTCT
24154232 AATTAATCAAATCATCATTTTAA
1 AATTAATCAAATCATCATTTTAA
24154255 AATTAATCAAATCATCATTTTAA
1 AATTAATCAAATCATCATTTTAA
24154278 TCGATTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (23 bp):
AATTAATCAAATCATCATTTTAA
Found at i:24154713 original size:24 final size:21
Alignment explanation
Indices: 24154677--24154728 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 21
24154667 TAAAGGTTCA
24154677 ATTTTATTATTTTATTATTAATAT
1 ATTTT-TTATTTTATT-TT-ATAT
24154701 ATATTTTTATTTTATTTTATAT
1 AT-TTTTTATTTTATTTTATAT
24154723 ATTTTT
1 ATTTTT
24154729 AAAAGGAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.15
22 6 0.22
23 2 0.07
24 12 0.44
25 3 0.11
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTTTTATTTTATTTTATAT
Found at i:24164165 original size:26 final size:26
Alignment explanation
Indices: 24164135--24164190 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
24164125 TGAAATTCCC
24164135 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
24164161 ATCATTGAACATTTACTTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
24164187 ATCA
1 ATCA
24164191 ATTTGTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:24166362 original size:21 final size:21
Alignment explanation
Indices: 24166338--24166379 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
24166328 TTTTTCTGTT
*
24166338 TTATTTATAAAATAACTAAAA
1 TTATTTATAAAAAAACTAAAA
* *
24166359 TTATTTCTAAAAAAATTAAAA
1 TTATTTATAAAAAAACTAAAA
24166380 AGATAAAATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
TTATTTATAAAAAAACTAAAA
Found at i:24167495 original size:33 final size:33
Alignment explanation
Indices: 24167457--24167520 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
24167447 AATTTTTAAA
24167457 AAAATATAATA-TGTCAAAAATATTAAAAATATT
1 AAAATA-AATATTGTCAAAAATATTAAAAATATT
* * *
24167490 AAAATAAATATTTTCTAATATATTAAAAATA
1 AAAATAAATATTGTCAAAAATATTAAAAATA
24167521 AATATATATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 4 0.15
33 23 0.85
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (33 bp):
AAAATAAATATTGTCAAAAATATTAAAAATATT
Found at i:24168689 original size:19 final size:19
Alignment explanation
Indices: 24168665--24168702 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
24168655 AGGATAAAAA
24168665 TATTAAAATAATAT-TAAAT
1 TATTAAAA-AATATATAAAT
24168684 TATTAAAAAATATATAAAT
1 TATTAAAAAATATATAAAT
24168703 AACATAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TATTAAAAAATATATAAAT
Found at i:24176495 original size:26 final size:27
Alignment explanation
Indices: 24176465--24176528 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
24176455 TTATACTGAA
24176465 ATTAAGACAACA-ATAATATACAAAAT
1 ATTAAGACAACATATAATATACAAAAT
* *
24176491 ATTAAAAC-TCATTTATAATATACAAAAT
1 ATTAAGACAACA--TATAATATACAAAAT
24176519 ATTAAGACAA
1 ATTAAGACAA
24176529 ATCTCATGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
25 2 0.07
26 7 0.23
28 21 0.70
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.28
Consensus pattern (27 bp):
ATTAAGACAACATATAATATACAAAAT
Found at i:24185671 original size:2 final size:2
Alignment explanation
Indices: 24185659--24185708 Score: 51
Period size: 2 Copynumber: 28.5 Consensus size: 2
24185649 TTAAGTATTA
24185659 AT AT AT A- AT AT AT AT AT -T AT -T AT AT -T AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24185696 A- AT AT A- AT AT AT A
1 AT AT AT AT AT AT AT A
24185709 AAACATAAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
1 7 0.17
2 34 0.83
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24185704 original size:43 final size:48
Alignment explanation
Indices: 24185617--24185709 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 48
24185607 TTTATATAAA
*
24185617 AATATATATTATATATTATATTAACTTAATATTTAAGTATTAATATAT
1 AATATATATTATATATTATATTAACTTAATATATAAGTATTAATATAT
24185665 AATATATA-TAT-TATTATATTATA-TT-ATATATAA-TA-TAATATAT
1 AATATATATTATATATTATATTA-ACTTAATATATAAGTATTAATATAT
24185708 AA
1 AA
24185710 AACATAAGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
43 10 0.23
44 2 0.05
45 7 0.16
46 12 0.28
47 4 0.09
48 8 0.19
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (48 bp):
AATATATATTATATATTATATTAACTTAATATATAAGTATTAATATAT
Found at i:24185706 original size:24 final size:24
Alignment explanation
Indices: 24185608--24185707 Score: 73
Period size: 24 Copynumber: 4.0 Consensus size: 24
24185598 AAGATATTTT
*
24185608 TTATATAAAAATATATATT-ATATA
1 TTATAT-AATATATATATTAATATA
24185632 TTATATTAACT-TA-ATATTTAAGTATTA
1 TTATA-TAA-TATATATA-TTAA-TA-TA
* *
24185659 ATATATAATATATATATTATTATA
1 TTATATAATATATATATTAATATA
*
24185683 TTATATTATATATA-ATATAATATA
1 TTATATAATATATATAT-TAATATA
24185707 T
1 T
24185708 AAAACATAAG
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
23 5 0.08
24 32 0.52
25 5 0.08
26 10 0.16
27 9 0.15
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (24 bp):
TTATATAATATATATATTAATATA
Found at i:24185709 original size:7 final size:7
Alignment explanation
Indices: 24185617--24185709 Score: 52
Period size: 7 Copynumber: 13.3 Consensus size: 7
24185607 TTTATATAAA
24185617 AATATAT
1 AATATAT
*
24185624 ATTATAT
1 AATATAT
*
24185631 ATTATATT
1 AATATA-T
*
24185639 AA-CT-T
1 AATATAT
*
24185644 AATATTT
1 AATATAT
24185651 AAGTAT-T
1 AA-TATAT
24185658 AATATAT
1 AATATAT
24185665 AATATAT
1 AATATAT
24185672 -ATAT-T
1 AATATAT
*
24185677 ATTATAT
1 AATATAT
*
24185684 TATATTAT
1 AATA-TAT
24185692 ATATAATAT
1 A-AT-ATAT
24185701 AATATAT
1 AATATAT
24185708 AA
1 AA
24185710 AACATAAGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
5 4 0.06
6 11 0.16
7 36 0.53
8 10 0.15
9 6 0.09
10 1 0.01
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (7 bp):
AATATAT
Found at i:24186920 original size:22 final size:23
Alignment explanation
Indices: 24186891--24186947 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
24186881 TAGCACGTTA
24186891 AGTGCTCTCTGTT-TAGCACATCT
1 AGTGCTCTCTGTTATAGCAC-TCT
*
24186914 -GTGCTCTCT-TTATAGCACTTT
1 AGTGCTCTCTGTTATAGCACTCT
24186935 AGTGCTCTCTGTT
1 AGTGCTCTCTGTT
24186948 CGTTTGTGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 4 0.13
22 24 0.80
23 2 0.07
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.44
Consensus pattern (23 bp):
AGTGCTCTCTGTTATAGCACTCT
Found at i:24189192 original size:18 final size:18
Alignment explanation
Indices: 24189169--24189203 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24189159 GATATAAAGT
*
24189169 TAGGGGATTAGTTTTTTA
1 TAGGGGATTAATTTTTTA
*
24189187 TAGGGGCTTAATTTTTT
1 TAGGGGATTAATTTTTT
24189204 TCCTATTTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.03, G:0.26, T:0.51
Consensus pattern (18 bp):
TAGGGGATTAATTTTTTA
Found at i:24191134 original size:19 final size:21
Alignment explanation
Indices: 24191096--24191136 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
24191086 ACAATGGACC
24191096 ATTTGAGTTTAGTATTTAAAT
1 ATTTGAGTTTAGTATTTAAAT
*
24191117 ATTTGA-TTTA-TTTTTAAAT
1 ATTTGAGTTTAGTATTTAAAT
24191136 A
1 A
24191137 AAAAAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 4 0.21
21 6 0.32
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (21 bp):
ATTTGAGTTTAGTATTTAAAT
Found at i:24192067 original size:22 final size:23
Alignment explanation
Indices: 24192026--24192068 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
24192016 GTTTATCAAT
* *
24192026 ATTTAATTCTCAAATTTATTTTG
1 ATTTAAGTCTCAAATATATTTTG
24192049 ATTTAAGT-TCAAATATATTT
1 ATTTAAGTCTCAAATATATTT
24192069 AAATTTGGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (23 bp):
ATTTAAGTCTCAAATATATTTTG
Found at i:24192074 original size:22 final size:23
Alignment explanation
Indices: 24192026--24192074 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
24192016 GTTTATCAAT
* * **
24192026 ATTTAATTCTCAAATTTATTTTG
1 ATTTAAGTCTCAAATATATTTAA
24192049 ATTTAAGT-TCAAATATATTTAA
1 ATTTAAGTCTCAAATATATTTAA
24192071 ATTT
1 ATTT
24192075 GGCCAATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (23 bp):
ATTTAAGTCTCAAATATATTTAA
Found at i:24194547 original size:20 final size:21
Alignment explanation
Indices: 24194524--24194562 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
24194514 AAACAAAAAA
*
24194524 AATAATATTAAA-AAATTAAG
1 AATAAAATTAAATAAATTAAG
24194544 AATAAAATTAAATAAATTA
1 AATAAAATTAAATAAATTA
24194563 TTATGAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (21 bp):
AATAAAATTAAATAAATTAAG
Found at i:24196091 original size:15 final size:15
Alignment explanation
Indices: 24196071--24196103 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
24196061 GTCATTCGAT
24196071 TCATCAACCTCATCA
1 TCATCAACCTCATCA
*
24196086 TCATCAGCCTCATCA
1 TCATCAACCTCATCA
24196101 TCA
1 TCA
24196104 ACATTATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.39, G:0.03, T:0.27
Consensus pattern (15 bp):
TCATCAACCTCATCA
Found at i:24196596 original size:19 final size:19
Alignment explanation
Indices: 24196572--24196608 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
24196562 GATATAAAGT
*
24196572 TAGGGGATTAGTTTTTTTA
1 TAGGGGATTAATTTTTTTA
*
24196591 TAGGGGCTTAATTTTTTT
1 TAGGGGATTAATTTTTTT
24196609 CCTATTTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.24, T:0.54
Consensus pattern (19 bp):
TAGGGGATTAATTTTTTTA
Found at i:24200684 original size:21 final size:21
Alignment explanation
Indices: 24200644--24200684 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24200634 GGCTCATTGA
**
24200644 CCTCATCATCATTATCATCAG
1 CCTCATCATCAACATCATCAG
*
24200665 CCTCATCATCAACATTATCA
1 CCTCATCATCAACATCATCA
24200685 ACCGGCACCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.34, G:0.02, T:0.32
Consensus pattern (21 bp):
CCTCATCATCAACATCATCAG
Found at i:24205726 original size:127 final size:126
Alignment explanation
Indices: 24205462--24205740 Score: 314
Period size: 127 Copynumber: 2.2 Consensus size: 126
24205452 ATTATTTATA
* *
24205462 TATACAATATATAAACATAAAACAATGCTATATCAATAATTGTATTTATAAAAATTGAATCAAAT
1 TATACAATATATAAACATAAAATAATACTATATCAATAATTGTATTTATAAAAATTGAATCAAAT
* ** * * * * **
24205527 TAAAATTTTATATATAAAATTACACAATCAAAATTCAAGTATAATAAATAAAATCATTTTT
66 CAAAATTGCATATATAAAATTAAAAAATCAAAATTCAAATATAATAAACAAAATCATTTCG
* *
24205588 TATATATATATATAAACATAAAATAATAAC-ATATCAATAATTGTATTT-TTAAAATTGAATCAA
1 TATACA-ATATATAAACATAAAATAAT-ACTATATCAATAATTGTATTTATAAAAATTGAATCAA
* * * *
24205651 ATCCAAATTGCGTATATAAAATTATAAAAAAATCAAAATTTAAATATAATAAACATAA-C-TATT
64 ATCAAAATTGCATATATAAAA-T-T-AAAAAATCAAAATTCAAATATAATAAACAAAATCAT-TT
24205714 CG
125 CG
*
24205716 TATGCAATATATAAACATAAAATAA
1 TATACAATATATAAACATAAAATAA
24205741 ATATTTTTTT
Statistics
Matches: 128, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
126 35 0.27
127 58 0.45
128 9 0.07
129 26 0.20
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.34
Consensus pattern (126 bp):
TATACAATATATAAACATAAAATAATACTATATCAATAATTGTATTTATAAAAATTGAATCAAAT
CAAAATTGCATATATAAAATTAAAAAATCAAAATTCAAATATAATAAACAAAATCATTTCG
Found at i:24206471 original size:30 final size:30
Alignment explanation
Indices: 24206435--24206493 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
24206425 ATCATGAGTA
24206435 GTTTCTGGGTTTTAAAGATAGATTTATACC
1 GTTTCTGGGTTTTAAAGATAGATTTATACC
24206465 GTTTCTGGGTTTTAAAGATAGATTTATAC
1 GTTTCTGGGTTTTAAAGATAGATTTATAC
24206494 TGATCTCCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.44
Consensus pattern (30 bp):
GTTTCTGGGTTTTAAAGATAGATTTATACC
Found at i:24208118 original size:41 final size:41
Alignment explanation
Indices: 24208072--24208159 Score: 167
Period size: 41 Copynumber: 2.1 Consensus size: 41
24208062 AAACTGGTAC
24208072 GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAACCTA
1 GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAACCTA
*
24208113 GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAATCTA
1 GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAACCTA
24208154 GAGAAA
1 GAGAAA
24208160 CAGCATACCT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.45, C:0.22, G:0.09, T:0.24
Consensus pattern (41 bp):
GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAACCTA
Found at i:24219631 original size:35 final size:34
Alignment explanation
Indices: 24219565--24219640 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 34
24219555 AATAAAATTT
*
24219565 AAATATTTTTAAATTATATTCGTAATAAAATA-TCA
1 AAATATTTTCAAATTATATTC-TAATAAAATAGT-A
*
24219600 AAATATTTTACAAATTATATT-TAAATCAAATAGTA
1 AAATATTTT-CAAATTATATTCT-AATAAAATAGTA
24219635 AAATAT
1 AAATAT
24219641 AAATTAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
34 1 0.03
35 24 0.67
36 11 0.31
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (34 bp):
AAATATTTTCAAATTATATTCTAATAAAATAGTA
Found at i:24234479 original size:3 final size:3
Alignment explanation
Indices: 24234473--24234543 Score: 92
Period size: 3 Copynumber: 24.0 Consensus size: 3
24234463 ATCTAAGATT
* **
24234473 TTA TTA TTA TTA TTAA TTA TTA GTA TCG TT- TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
24234517 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
24234544 AGTTAAAGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
2 4 0.07
3 53 0.88
4 3 0.05
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:24239595 original size:58 final size:58
Alignment explanation
Indices: 24239518--24239663 Score: 172
Period size: 58 Copynumber: 2.5 Consensus size: 58
24239508 TTATGATTTT
* *
24239518 TTAATTT-ATATAATAATTATATTAAGAATTTTATTAAATTATATATTA-TTTTATTAAG
1 TTAATTTCA-ATAATAATTATATTAA-AATTTGATTAAATTATATATTATTTTTATTAAA
* * * *
24239576 TT-ATATTCAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATTTTTATTAAA
1 TTAAT-TTCAATAATAATTATATTAAAATTTGATTAAATTATATATTATTTTTATTAAA
* *
24239634 TTAATTTTAATAATAATTTTATTAAAATTT
1 TTAATTTCAATAATAATTATATTAAAATTT
24239664 AATAACAATA
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
57 20 0.27
58 51 0.69
59 3 0.04
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (58 bp):
TTAATTTCAATAATAATTATATTAAAATTTGATTAAATTATATATTATTTTTATTAAA
Found at i:24239851 original size:16 final size:16
Alignment explanation
Indices: 24239830--24239867 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
24239820 TGAATTACTG
24239830 ATTACAG-TTCTATTCA
1 ATTACAGCTT-TATTCA
24239846 ATTACAGCTTTATTCA
1 ATTACAGCTTTATTCA
24239862 ATTACA
1 ATTACA
24239868 ACCCTATTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 19 0.90
17 2 0.10
ACGTcount: A:0.34, C:0.18, G:0.05, T:0.42
Consensus pattern (16 bp):
ATTACAGCTTTATTCA
Found at i:24239875 original size:16 final size:16
Alignment explanation
Indices: 24239839--24239881 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
24239829 GATTACAGTT
* *
24239839 CTATTCAATTACAGCT
1 CTATTCAATTACAACC
*
24239855 TTATTCAATTACAACC
1 CTATTCAATTACAACC
*
24239871 CTATTCCATTA
1 CTATTCAATTA
24239882 TAGTGAACCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.02, T:0.40
Consensus pattern (16 bp):
CTATTCAATTACAACC
Found at i:24258703 original size:16 final size:16
Alignment explanation
Indices: 24258684--24258720 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
24258674 TTAAAAAATA
24258684 ACTAATATATCCTTTT
1 ACTAATATATCCTTTT
24258700 ACTAATATATCCTTTT
1 ACTAATATATCCTTTT
24258716 ACTAA
1 ACTAA
24258721 ATAACTACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.46
Consensus pattern (16 bp):
ACTAATATATCCTTTT
Found at i:24261016 original size:18 final size:18
Alignment explanation
Indices: 24260993--24261035 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24260983 GTTCAAGGAG
24260993 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
24261011 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
24261029 TAATTAA
1 TAATTAA
24261036 GAACTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:24265291 original size:16 final size:16
Alignment explanation
Indices: 24265270--24265305 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
24265260 TTAAAAGTAA
24265270 AATAAAATAATCAAGT
1 AATAAAATAATCAAGT
24265286 AATAAAATAATCAAGT
1 AATAAAATAATCAAGT
24265302 AATA
1 AATA
24265306 CAGTGTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (16 bp):
AATAAAATAATCAAGT
Found at i:24275524 original size:29 final size:30
Alignment explanation
Indices: 24275473--24275533 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
24275463 CAAAAATATT
*
24275473 ATTTATTAAATTTTAAAGATTTTATTTGTC
1 ATTTATTAAATTTTAAAGATTTTATTTATC
* *
24275503 ATTTATTATA-TTTAAA-ATTTTTTTTTATC
1 ATTTATTAAATTTTAAAGA-TTTTATTTATC
24275532 AT
1 AT
24275534 AATATATATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.04
29 17 0.63
30 9 0.33
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (30 bp):
ATTTATTAAATTTTAAAGATTTTATTTATC
Found at i:24276076 original size:21 final size:22
Alignment explanation
Indices: 24276041--24276083 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
24276031 TAGGTTCTTT
*
24276041 ATTTATATATATTGTTAAATTG
1 ATTTATATATATTGTCAAATTG
*
24276063 ATTTAT-TTTATTGTCAAATTG
1 ATTTATATATATTGTCAAATTG
24276084 TTAATATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56
Consensus pattern (22 bp):
ATTTATATATATTGTCAAATTG
Found at i:24277084 original size:13 final size:13
Alignment explanation
Indices: 24277068--24277092 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24277058 TTTTAAAATG
24277068 AAATTTTTTATAT
1 AAATTTTTTATAT
24277081 AAATTTTTTATA
1 AAATTTTTTATA
24277093 ATTTATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
AAATTTTTTATAT
Found at i:24283625 original size:57 final size:57
Alignment explanation
Indices: 24283487--24283601 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
24283477 TGTTATAAAA
24283487 AGTATTATAATATACTCATTTATTAAAAATTGTAGCAAAAAGATATGAACATAACTT
1 AGTATTATAATATACTCATTTATTAAAAATTGTAGCAAAAAGATATGAACATAACTT
*
24283544 AGTATTATAATATACTCATTTATTAAAACTTGTAGCAAAAAGATATGAACATAACTT
1 AGTATTATAATATACTCATTTATTAAAAATTGTAGCAAAAAGATATGAACATAACTT
24283601 A
1 A
24283602 TTTACGTGTC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.35
Consensus pattern (57 bp):
AGTATTATAATATACTCATTTATTAAAAATTGTAGCAAAAAGATATGAACATAACTT
Found at i:24294657 original size:75 final size:72
Alignment explanation
Indices: 24294570--24294740 Score: 206
Period size: 75 Copynumber: 2.4 Consensus size: 72
24294560 GTTTTCCTCA
** * * **
24294570 TTGA-AATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 TTGATAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
24294633 TCAGTATGG
65 TCAGTAT-G
* *
24294642 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAG
1 --TTGATAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
24294707 CTCAGTATG
64 CTCAGTATG
24294716 --GATAATACCATACCTACATTTCACA
1 TTGATAATACCATACCTACATTTCACA
24294741 CTTTGCCATG
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 25 0.29
74 8 0.09
75 54 0.62
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (72 bp):
TTGATAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATG
Found at i:24294752 original size:35 final size:35
Alignment explanation
Indices: 24294574--24294740 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
24294564 TCCTCATTGA
** * *
24294574 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
* ** *
24294609 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAGCTCAGTAT-G----GAT
24294649 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAGCTCAGTATGGAT
24294684 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAGCTCAGTATGGAT
24294719 AATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
24294741 CTTTGCCATG
Statistics
Matches: 119, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
35 89 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAGCTCAGTATGGAT
Found at i:24300437 original size:20 final size:20
Alignment explanation
Indices: 24300412--24300494 Score: 60
Period size: 20 Copynumber: 4.0 Consensus size: 20
24300402 TGATCAGAAT
24300412 ACGACACATAAGTGCCTGAA
1 ACGACACATAAGTGCCTGAA
* * *
24300432 ACGACACACGAGGTGCCTG-T
1 ACGACACA-TAAGTGCCTGAA
* *
24300452 GCGACACACAATGTGCCTGAAA
1 ACGACACATAA-GTGCCTG-AA
*
24300474 TATGACACATAAAGTGCCTGA
1 -ACGACACAT-AAGTGCCTGA
24300495 TCAGAAAGCC
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
19 1 0.02
20 22 0.47
21 8 0.17
22 1 0.02
23 13 0.28
24 2 0.04
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (20 bp):
ACGACACATAAGTGCCTGAA
Found at i:24300740 original size:28 final size:28
Alignment explanation
Indices: 24300698--24300779 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
24300688 AACACACCAG
* *
24300698 TATAAT-CTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
24300725 TATAATCCTCCCAAACACACCA-AATAA
1 TATAATCCTCCAAAACACACCAGAATAA
24300752 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
24300780 GCACAAAGTG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 17 0.35
28 27 0.56
29 4 0.08
ACGTcount: A:0.48, C:0.30, G:0.02, T:0.20
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:24301463 original size:16 final size:16
Alignment explanation
Indices: 24301442--24301475 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24301432 GAGTTACCGA
*
24301442 TTCATTTATCAGATAT
1 TTCATTAATCAGATAT
*
24301458 TTCATTAATCCGATAT
1 TTCATTAATCAGATAT
24301474 TT
1 TT
24301476 TTTTTTCCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.50
Consensus pattern (16 bp):
TTCATTAATCAGATAT
Found at i:24304307 original size:25 final size:24
Alignment explanation
Indices: 24304275--24304367 Score: 69
Period size: 27 Copynumber: 3.5 Consensus size: 24
24304265 TGAATTGTTA
*
24304275 TTTATAAATTTATATATATTGTTTAT
1 TTTA-AAATTT-TATATATTATTTAT
* *
24304301 TCTTAAAACTTTTCTTAGATTATTTAT
1 T-TTAAAA-TTTT-ATATATTATTTAT
* *
24304328 TTTCAAATTTTTATATATTTTTTAT
1 TTT-AAAATTTTATATATTATTTAT
24304353 TTTAAACACTTTTAT
1 TTTAAA-A-TTTTAT
24304368 TTATATATAT
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
24 3 0.06
25 13 0.25
26 17 0.32
27 20 0.38
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (24 bp):
TTTAAAATTTTATATATTATTTAT
Found at i:24304563 original size:24 final size:24
Alignment explanation
Indices: 24304510--24304572 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
24304500 GTTGCTTTAT
* *
24304510 TTTAAATTGTTTGGTATATTAATTAT
1 TTTAAATTGTTT--TATACTAATTAC
24304536 TTTAAATTGTTTTATACT-ATTCAC
1 TTTAAATTGTTTTATACTAATT-AC
*
24304560 TTTAAATTTTTTT
1 TTTAAATTGTTTT
24304573 TATGGTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 3 0.09
24 18 0.55
26 12 0.36
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (24 bp):
TTTAAATTGTTTTATACTAATTAC
Found at i:24307244 original size:20 final size:20
Alignment explanation
Indices: 24307216--24307253 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24307206 TTGAATAATT
24307216 ACCCATATTTATTTCAAATG
1 ACCCATATTTATTTCAAATG
* *
24307236 ACCCCTATTTCTTTCAAA
1 ACCCATATTTATTTCAAA
24307254 GGACTCGTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (20 bp):
ACCCATATTTATTTCAAATG
Found at i:24309486 original size:19 final size:19
Alignment explanation
Indices: 24309462--24309499 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
24309452 TTAGTTAATA
24309462 ATTTTAATGA-TATTTTATT
1 ATTTT-ATGATTATTTTATT
*
24309481 ATTTTATTATTATTTTATT
1 ATTTTATGATTATTTTATT
24309500 TAGTATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
ATTTTATGATTATTTTATT
Found at i:24311590 original size:46 final size:46
Alignment explanation
Indices: 24311530--24311803 Score: 415
Period size: 46 Copynumber: 6.0 Consensus size: 46
24311520 TTTGACGTGA
* * * * * *
24311530 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * ** *
24311576 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGGCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
24311622 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
24311668 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
24311714 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
24311760 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
24311804 AGAGCACACT
Statistics
Matches: 212, Mismatches: 15, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 208 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:24313917 original size:11 final size:11
Alignment explanation
Indices: 24313901--24313925 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24313891 CTTTCTTTAT
24313901 ATAATAATAAA
1 ATAATAATAAA
24313912 ATAATAATAAA
1 ATAATAATAAA
24313923 ATA
1 ATA
24313926 TCTTATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAATAATAAA
Found at i:24315335 original size:47 final size:46
Alignment explanation
Indices: 24315228--24315400 Score: 247
Period size: 46 Copynumber: 3.7 Consensus size: 46
24315218 ATGAAATGTG
* *
24315228 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
*
24315274 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGGAAATGAA
* * * *
24315321 TAAGACCATGGTTGAAAGATACAATGACAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * *
24315367 TAAGACCATAGTTGAAAGATACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
24315401 TCGAAGATAA
Statistics
Matches: 114, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 72 0.63
47 42 0.37
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:24315381 original size:93 final size:93
Alignment explanation
Indices: 24315228--24315400 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
24315218 ATGAAATGTG
* * * *
24315228 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACAATGACAACATGACATGAAATGAATAAGACCATAGTTGAAAGA
24315293 TACCATGGCAACATGACGGGGAAATGAA
66 TACCATGGCAACATGACGGGGAAATGAA
*
24315321 TAAGACCATGGTTGAAAGATACAATGACAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAG
1 TAAGACCATGGTTGAAAGATACAATGACAACATGACATG-AAATGAATAAGACCATAGTTGAAAG
* *
24315385 ATACTATGGCATCATG
65 ATACCATGGCAACATG
24315401 TCGAAGATAA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (93 bp):
TAAGACCATGGTTGAAAGATACAATGACAACATGACATGAAATGAATAAGACCATAGTTGAAAGA
TACCATGGCAACATGACGGGGAAATGAA
Found at i:24334075 original size:23 final size:23
Alignment explanation
Indices: 24334030--24334075 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
24334020 ATTGAGATAG
* *
24334030 TTTAGATTTGAATTTTCTCATGT
1 TTTAGATTTAAATTTTATCATGT
*
24334053 TTTAGATTTAAATTTTATTATGT
1 TTTAGATTTAAATTTTATCATGT
24334076 ATGAGTTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.26, C:0.04, G:0.11, T:0.59
Consensus pattern (23 bp):
TTTAGATTTAAATTTTATCATGT
Found at i:24334122 original size:22 final size:21
Alignment explanation
Indices: 24334090--24334144 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
24334080 GTTGTATTTA
24334090 AATT-TATTTTAGTGTAAATC
1 AATTATATTTTAGTGTAAATC
* * *
24334110 TAATTATATTTTAATTTTTAATC
1 -AATTATATTTT-AGTGTAAATC
24334133 AATTATATTTTA
1 AATTATATTTTA
24334145 TATTAAGTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 5 0.17
22 17 0.59
23 7 0.24
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (21 bp):
AATTATATTTTAGTGTAAATC
Found at i:24334620 original size:20 final size:20
Alignment explanation
Indices: 24334595--24334646 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
24334585 GTACTTAGAA
*
24334595 AATTTTTCAAAAAACATTAT
1 AATTTTTCAAAAAACATTAC
*
24334615 AATTTTTCAAAAAATATTAC
1 AATTTTTCAAAAAACATTAC
24334635 AATTTTTCAAAA
1 AATTTTTCAAAA
24334647 GTGTAGGGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (20 bp):
AATTTTTCAAAAAACATTAC
Found at i:24336195 original size:25 final size:25
Alignment explanation
Indices: 24336065--24336281 Score: 157
Period size: 25 Copynumber: 8.8 Consensus size: 25
24336055 TCGAGCTGAG
24336065 TATCGGGAAGCTCATACA-AGCCATA
1 TATCGGGAAGCTCATA-AGAGCCATA
* * * *
24336090 -AACTGAAAGCTCA-AGAGAGCCAAA
1 TATCGGGAAGCTCATA-AGAGCCATA
**
24336114 T-TCGGGAAGCTCATGCGAGCCA-A
1 TATCGGGAAGCTCATAAGAGCCATA
* *
24336137 TATGGGGAAGCTC-TATAGAGCTAT-
1 TATCGGGAAGCTCATA-AGAGCCATA
** *
24336161 TAATTAGGAAGTTCATAAGAGCCA-A
1 T-ATCGGGAAGCTCATAAGAGCCATA
24336186 TTATCGGGAAGCTCA-ATAGAGCCATA
1 -TATCGGGAAGCTCATA-AGAGCCATA
* *
24336212 TAACGGGAAGCTCATAAAAGCCATA
1 TATCGGGAAGCTCATAAGAGCCATA
*
24336237 TAGCGGGAAGCTCATAAGAGCC-TA
1 TATCGGGAAGCTCATAAGAGCCATA
* *
24336261 TTATCGAGACGCTCATAAGAG
1 -TATCGGGAAGCTCATAAGAG
24336282 TTGTGGTGTG
Statistics
Matches: 150, Mismatches: 28, Indels: 28
0.73 0.14 0.14
Matches are distributed among these distances:
23 5 0.03
24 50 0.33
25 90 0.60
26 5 0.03
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (25 bp):
TATCGGGAAGCTCATAAGAGCCATA
Found at i:24340299 original size:14 final size:13
Alignment explanation
Indices: 24340276--24340305 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
24340266 TTTTTAAATG
24340276 TTTTAATTATTTA
1 TTTTAATTATTTA
24340289 TTTTAAATTATTTA
1 TTTT-AATTATTTA
24340303 TTT
1 TTT
24340306 ATGAAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAATTATTTA
Found at i:24343455 original size:2 final size:2
Alignment explanation
Indices: 24343450--24343484 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
24343440 ATCAAAAAAG
24343450 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24343485 TTCGGATACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24345825 original size:26 final size:25
Alignment explanation
Indices: 24345795--24345861 Score: 68
Period size: 24 Copynumber: 2.7 Consensus size: 25
24345785 TATTTTTTAG
* *
24345795 ATTTATAATATTTTATATTATGTTATT
1 ATTTATAATATTATA-ATAAT-TTATT
24345822 -TTTAT-ATATTATAATAATTTATT
1 ATTTATAATATTATAATAATTTATT
*
24345845 ATTTATAAAATTA-AATA
1 ATTTATAATATTATAATA
24345862 TATAGTAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
23 5 0.14
24 13 0.37
25 12 0.34
26 5 0.14
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (25 bp):
ATTTATAATATTATAATAATTTATT
Found at i:24345944 original size:26 final size:26
Alignment explanation
Indices: 24345914--24345964 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24345904 TAAGATAATT
* *
24345914 ATATATATAATT-TTAATAGATTAAAA
1 ATATATAAAATTATT-ATACATTAAAA
24345940 ATATATAAAATTATTATACATTAAA
1 ATATATAAAATTATTATACATTAAA
24345965 TTAAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (26 bp):
ATATATAAAATTATTATACATTAAAA
Found at i:24346492 original size:41 final size:41
Alignment explanation
Indices: 24346439--24346530 Score: 166
Period size: 41 Copynumber: 2.2 Consensus size: 41
24346429 TTAAAAATAT
24346439 TTATATTAAAAAATAATACCATAAATATAATAAATGTTTTA
1 TTATATTAAAAAATAATACCATAAATATAATAAATGTTTTA
*
24346480 TTATATTAAAAAATAATACCATAAATATAGTAAATGTTTTA
1 TTATATTAAAAAATAATACCATAAATATAATAAATGTTTTA
*
24346521 TTGTATTAAA
1 TTATATTAAA
24346531 TATATTTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.40
Consensus pattern (41 bp):
TTATATTAAAAAATAATACCATAAATATAATAAATGTTTTA
Found at i:24346698 original size:26 final size:26
Alignment explanation
Indices: 24346639--24346704 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 26
24346629 ATTTAATATA
24346639 AATATAATATAAATAATTATTATTTT
1 AATATAATATAAATAATTATTATTTT
24346665 ACCTATATAAT-TAATATAATTATT-TTTAT
1 A---ATATAATATAA-ATAATTATTATTT-T
24346694 AATATAATATA
1 AATATAATATA
24346705 TTTGGGCCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
26 8 0.24
27 2 0.06
28 6 0.18
29 18 0.53
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (26 bp):
AATATAATATAAATAATTATTATTTT
Found at i:24357909 original size:25 final size:25
Alignment explanation
Indices: 24357881--24357935 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
24357871 ATTATAAAAA
* *
24357881 ATAATTTATCTA-TTATAAAAGTGTT
1 ATAATATATCTATTTATAAAAAT-TT
*
24357906 ATAATATATTTATTTATAAAAATTT
1 ATAATATATCTATTTATAAAAATTT
24357931 ATAAT
1 ATAAT
24357936 CAAGAAGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (25 bp):
ATAATATATCTATTTATAAAAATTT
Found at i:24367227 original size:11 final size:11
Alignment explanation
Indices: 24367213--24367254 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
24367203 CTTCTCACAA
*
24367213 TTCTCTCTAAT
1 TTCTCTCAAAT
24367224 TTCTCTCCAAA-
1 TTCTCT-CAAAT
24367235 TTCTCTCAAAT
1 TTCTCTCAAAT
*
24367246 TTCTTTCAA
1 TTCTCTCAA
24367255 TTCTTATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 4 0.15
11 20 0.74
12 3 0.11
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.48
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:24368435 original size:7 final size:7
Alignment explanation
Indices: 24368415--24368457 Score: 68
Period size: 7 Copynumber: 6.0 Consensus size: 7
24368405 CATAATAAAA
24368415 TAGTCATT
1 TAGT-ATT
*
24368423 TCGTATT
1 TAGTATT
24368430 TAGTATT
1 TAGTATT
24368437 TAGTATT
1 TAGTATT
24368444 TAGTATT
1 TAGTATT
24368451 TAGTATT
1 TAGTATT
24368458 ACGTATATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
7 30 0.91
8 3 0.09
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.56
Consensus pattern (7 bp):
TAGTATT
Found at i:24369909 original size:44 final size:45
Alignment explanation
Indices: 24369856--24369959 Score: 138
Period size: 44 Copynumber: 2.3 Consensus size: 45
24369846 TGTCTTTGAC
* * *
24369856 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
24369900 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
24369946 ATGGACTTACATGA
1 ATGGACTTACATGA
24369960 CTCATTTCTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 33 0.65
46 18 0.35
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:24372788 original size:39 final size:39
Alignment explanation
Indices: 24372729--24372907 Score: 277
Period size: 39 Copynumber: 4.6 Consensus size: 39
24372719 ATCGTGATCT
** * *
24372729 GAAGCCCGAAATCTAGCTGAAGTACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
24372768 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
**
24372807 GAAGCCCGAAGGCTAACTGAAGCATGTAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* *
24372846 GGAGCCCGAAAGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
24372885 GAAGCCCGGAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
24372908 TCATCAGAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 127 1.00
ACGTcount: A:0.37, C:0.22, G:0.27, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:24375460 original size:6 final size:6
Alignment explanation
Indices: 24375426--24375489 Score: 58
Period size: 6 Copynumber: 10.2 Consensus size: 6
24375416 CAACCCAATC
* * *
24375426 ATAAAA ATTAAAA AT-AAT TTAATAA ATAAAA ATAAAAA ACTAAAA CTAAAA
1 ATAAAA A-TAAAA ATAAAA ATAA-AA ATAAAA AT-AAAA A-TAAAA ATAAAA
24375477 ATAAAA ATAAAA A
1 ATAAAA ATAAAA A
24375490 ACATATAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
5 3 0.06
6 24 0.51
7 19 0.40
8 1 0.02
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (6 bp):
ATAAAA
Found at i:24376519 original size:15 final size:15
Alignment explanation
Indices: 24376499--24376529 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24376489 CGATGGTGTG
24376499 TGCGATGCCATTGGC
1 TGCGATGCCATTGGC
24376514 TGCGATGCCATTGGC
1 TGCGATGCCATTGGC
24376529 T
1 T
24376530 TTCTTGTCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.32, T:0.29
Consensus pattern (15 bp):
TGCGATGCCATTGGC
Found at i:24378652 original size:14 final size:14
Alignment explanation
Indices: 24378629--24378711 Score: 64
Period size: 14 Copynumber: 5.8 Consensus size: 14
24378619 ATGATAGTAC
*
24378629 AAATATAAATAGAT
1 AAATAAAAATAGAT
24378643 AAATAAAAATTAGAT
1 AAATAAAAA-TAGAT
*
24378658 AAATAATAATAGTATT
1 AAATAAAAATAG-A-T
*
24378674 AGAATAATAA-A-AT
1 A-AATAAAAATAGAT
*
24378687 AAATATAAATAGA-
1 AAATAAAAATAGAT
24378700 AACATAAAAATA
1 AA-ATAAAAATA
24378712 ATAGTAATAA
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
12 6 0.11
13 5 0.09
14 21 0.37
15 14 0.25
16 3 0.05
17 8 0.14
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.27
Consensus pattern (14 bp):
AAATAAAAATAGAT
Found at i:24378661 original size:29 final size:27
Alignment explanation
Indices: 24378629--24378714 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 27
24378619 ATGATAGTAC
24378629 AAATATAAATAGATAAATAAAAATTAGAT
1 AAATATAAATAGATAAATAAAAA-TA-AT
*
24378658 AAATA-ATAATAGTATTAGAATAATAA-AAT
1 AAATATA-AATAG-A-TA-AATAAAAATAAT
24378687 AAATATAAATAGA-AACATAAAAATAAT
1 AAATATAAATAGATAA-ATAAAAATAAT
24378714 A
1 A
24378715 GTAATAATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
25 1 0.02
26 7 0.15
27 4 0.08
28 2 0.04
29 22 0.46
30 3 0.06
31 2 0.04
32 7 0.15
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATATAAATAGATAAATAAAAATAAT
Found at i:24378720 original size:23 final size:23
Alignment explanation
Indices: 24378656--24378720 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 23
24378646 TAAAAATTAG
*
24378656 ATAAATAATAATAGTATTAGAATA
1 ATAAA-AATAATAGTAATAGAATA
24378680 AT-AAAATAAATA-TAAATAGAA-A
1 ATAAAAAT-AATAGT-AATAGAATA
24378702 CATAAAAATAATAGTAATA
1 -ATAAAAATAATAGTAATA
24378721 ATATATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
22 5 0.14
23 22 0.63
24 8 0.23
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.28
Consensus pattern (23 bp):
ATAAAAATAATAGTAATAGAATA
Found at i:24379739 original size:44 final size:44
Alignment explanation
Indices: 24379670--24379999 Score: 209
Period size: 44 Copynumber: 7.5 Consensus size: 44
24379660 TGGAACTTAA
* * *
24379670 AGGG-GATAAAATCTGGTAATCTTCAGTCTGCTCCACTATTGCTT
1 AGGGAGATAAGATCT-GTAATTTTCAGTCTGCTCCACTACTGCTT
* *
24379714 AGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTACTT
1 AGGGAGATAAGATCTGTAATTTTCAGTCTGCTCCACTACTGCTT
* * ** * * *
24379758 AAGGAGATAAGGCTCACT-GTTTTC-GATCTGCTCCGCTACTTCTT
1 AGGGAGATAA-GATCTGTAATTTTCAG-TCTGCTCCACTACTGCTT
* * *
24379802 AGGGAGATAAGATCTGTAATTTTCAGCCTGTTACC-CTACTACTT
1 AGGGAGATAAGATCTGTAATTTTCAGTCTGCT-CCACTACTGCTT
* * * *
24379846 AAGGG-GTTAAG-GCT-CACTGTCTTC-GATCTGCTCCACTACTGCTT
1 -AGGGAGATAAGATCTGTAAT-T-TTCAG-TCTGCTCCACTACTGCTT
* * * *
24379890 AGAGAGATAAGATCTGTAATTTTCAGCCTGTTATC-CTACTGCTT
1 AGGGAGATAAGATCTGTAATTTTCAGTCTGCT-CCACTACTGCTT
* * ** * *
24379934 AGGGAGTTAAG-GCTCGTTGTCTTC-GATCTGCTCCACTACTGTTT
1 AGGGAGATAAGATCT-GTAATTTTCAG-TCTGCTCCACTACTGCTT
24379978 A-GG-GATAAGATCTGTAATTTTC
1 AGGGAGATAAGATCTGTAATTTTC
24380000 CAGGCTGTTA
Statistics
Matches: 215, Mismatches: 51, Indels: 42
0.70 0.17 0.14
Matches are distributed among these distances:
42 13 0.06
43 22 0.10
44 153 0.71
45 25 0.12
46 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (44 bp):
AGGGAGATAAGATCTGTAATTTTCAGTCTGCTCCACTACTGCTT
Found at i:24379845 original size:88 final size:87
Alignment explanation
Indices: 24379696--24380400 Score: 746
Period size: 88 Copynumber: 8.2 Consensus size: 87
24379686 TAATCTTCAG
* * * *
24379696 TCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCT-CCACTACTACTTAA
1 TCTGCTCCACTACTGTTTAGGG-GATAAGATCTGTAATTTTCAGCCTGTTACC-CTACTACTTAG
* * * *
24379760 GGAGATAAGGCTCACTGTTTTCGA
64 GGGGTTAAGGCTCGCTGTCTTCGA
* *
24379784 TCTGCTCCGCTACT-TCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAA
1 TCTGCTCCACTACTGT-TTAGGG-GATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAG
*
24379848 GGGGTTAAGGCTCACTGTCTTCGA
64 GGGGTTAAGGCTCGCTGTCTTCGA
* * * *
24379872 TCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTATCCTACTGCTTAGG
1 TCTGCTCCACTACTGTTTAG-GGGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGG
* *
24379937 GAGTTAAGGCTCGTTGTCTTCGA
65 GGGTTAAGGCTCGCTGTCTTCGA
*
24379960 TCTGCTCCACTACTGTTTA-GGGATAAGATCTGTAATTTTCCAGGCTGTTACCCTACTACTTAGG
1 TCTGCTCCACTACTGTTTAGGGGATAAGATCTGTAATTTT-CAGCCTGTTACCCTACTACTTAGG
*
24380024 GGGTTAAGGCTTGCTGTCTTCGA
65 GGGTTAAGGCTCGCTGTCTTCGA
* ** * * * *
24380047 TCTGCTCCACTACTGTTTAGGGG---AGATCT-TTATTTTCCAAACTATCACTCTACTGCTTAGG
1 TCTGCTCCACTACTGTTTAGGGGATAAGATCTGTAATTTT-CAGCCTGTTACCCTACTACTTAGG
* *
24380108 GGGTTAAGGCTTGCTATCTTCGA
65 GGGTTAAGGCTCGCTGTCTTCGA
* *
24380131 TCTGCTCCACTACTGTTTAGGGGAT---ATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGG
1 TCTGCTCCACTACTGTTTAGGGGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGG
* *
24380193 GGTTAAGGCTTGCTGTCTTTGA
66 GGTTAAGGCTCGCTGTCTTCGA
* * * **
24380215 TCTACTCCACTACTGTTTAGAGG----GATCTGT-ATTTTCCAGCCTATTACCCTACTGTTTAGG
1 TCTGCTCCACTACTGTTTAGGGGATAAGATCTGTAATTTT-CAGCCTGTTACCCTACTACTTAGG
* * *
24380275 GGGTCAA-ACTTGCTGTCTTCGA
65 GGGTTAAGGCTCGCTGTCTTCGA
* * * * * *
24380297 TCTACTCCACTACTGTTTAGGGG---AGATTTGTATTTTTCAGCTTATTACCCTACTGCTTAGGG
1 TCTGCTCCACTACTGTTTAGGGGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGG
* * *
24380359 GGTTAAGGCTTGTTGCCTTCGA
66 GGTTAAGGCTCGCTGTCTTCGA
* *
24380381 TCTGCTCCATTATTGTTTAG
1 TCTGCTCCACTACTGTTTAG
24380401 AGGAGATCTG
Statistics
Matches: 542, Mismatches: 61, Indels: 32
0.85 0.10 0.05
Matches are distributed among these distances:
82 39 0.07
83 68 0.13
84 168 0.31
85 11 0.02
86 19 0.04
87 60 0.11
88 174 0.32
89 3 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (87 bp):
TCTGCTCCACTACTGTTTAGGGGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGG
GGTTAAGGCTCGCTGTCTTCGA
Found at i:24380352 original size:166 final size:168
Alignment explanation
Indices: 24379765--24380416 Score: 799
Period size: 166 Copynumber: 3.8 Consensus size: 168
24379755 CTTAAGGAGA
** * * *
24379765 TAAGGCTCACTGTTTTCGATCTGCTCCGCTACT-TCTTAGGGAGATAAGATCTGTAATTTTCAGC
1 TAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGT-TTAGGG-G---AGATCTGTATTTTTCAGC
* ** *
24379829 CTGTTACCCTACTACTTAAGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCACTACTGCTTAGAG
61 CTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGAG
* * *
24379894 AGATAAGATCTGTAATTTT-CAGCCTGTTATCCTACTGCTTAGGGAGT
126 -G---AGATCTGT-ATTTTCCAGCCTATTACCCTACTGCTTAGGGGGT
* * * * *
24379941 TAAGGCTCGTTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTAATTTTCCAGGCT
1 TAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGG--GAGATCTGT-ATTTTTCAGCCT
*
24380006 GTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGGA
63 GTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGAGGA
* ** * *
24380071 GATCTTTATTTTCCAAACTATCACTCTACTGCTTAGGGGGT
128 GATCTGTATTTTCCAGCCTATTACCCTACTGCTTAGGGGGT
* *
24380112 TAAGGCTTGCTATCTTCGATCTGCTCCACTACTGTTTAGGGGATATCTGTATTTTTCAGCCTGTT
1 TAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGGAGATCTGTATTTTTCAGCCTGTT
* * *
24380177 ACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTACTCCACTACTGTTTAGAGG-GAT
66 ACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGAGGAGAT
*
24380241 CTGTATTTTCCAGCCTATTACCCTACTGTTTAGGGGGT
131 CTGTATTTTCCAGCCTATTACCCTACTGCTTAGGGGGT
* * * * * *
24380279 CAA-ACTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAGATTTGTATTTTTCAGCTTATT
1 TAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGGAGATCTGTATTTTTCAGCCTGTT
* * * * *
24380343 ACCCTACTGCTTAGGGGGTTAAGGCTTGTTGCCTTCGATCTGCTCCATTATTGTTTAGAGGAGAT
66 ACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGAGGAGAT
24380408 CTGTATTTT
131 CTGTATTTT
24380417 TCTATCTGCT
Statistics
Matches: 418, Mismatches: 53, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
166 109 0.26
167 49 0.12
168 70 0.17
169 7 0.02
170 5 0.01
171 66 0.16
174 9 0.02
175 67 0.16
176 35 0.08
177 1 0.00
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (168 bp):
TAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGGAGATCTGTATTTTTCAGCCTGTT
ACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGAGGAGAT
CTGTATTTTCCAGCCTATTACCCTACTGCTTAGGGGGT
Found at i:24380365 original size:250 final size:251
Alignment explanation
Indices: 24379811--24380418 Score: 774
Period size: 250 Copynumber: 2.4 Consensus size: 251
24379801 TAGGGAGATA
* * * * * **
24379811 AGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCTCACTGTCTTCGATCTG
1 AGATTTGTATTTTTCAG-CTATTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
* * * *
24379876 CTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTATCCTACTGCTTAGGGAGT
65 CTCCACTACTGTTTAG-GGGAT---ATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGAGT
* * *
24379941 TAAGGCTCGTTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTAATTTTCCAGGCT
126 TAAGGCTCGCTGTCTTCGATCTACTCCACTACTGTTTAGGG---AGATCTGTAATTTTCCAGCCT
* * * *
24380006 GTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGG
188 ATTACCCTACTACTTAGGGGGTCAAGACTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGG
* * * * *
24380070 AGATCTT-TATTTTCCAAACTATCACTCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCT
1 AGAT-TTGTATTTTTC-AGCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCT
*
24380134 GCTCCACTACTGTTTAGGGGATATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAA
64 GCTCCACTACTGTTTAGGGGATATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGAGTTAA
* *
24380199 GGCTTGCTGTCTTTGATCTACTCCACTACTGTTTAGAGG-GATCTGT-ATTTTCCAGCCTATTAC
129 GGCTCGCTGTCTTCGATCTACTCCACTACTGTTTAG-GGAGATCTGTAATTTTCCAGCCTATTAC
**
24380262 CCTACTGTTTAGGGGGTCAA-ACTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGG
193 CCTACTACTTAGGGGGTCAAGACTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGG
* *
24380320 AGATTTGTATTTTTCAGCTTATTACCCTACTGCTTAGGGGGTTAAGGCTTGTTGCCTTCGATCTG
1 AGATTTGTATTTTTCAGC-TATTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
* * * *
24380385 CTCCATTATTGTTTAGAGGAGATCTGTATTTTTC
65 CTCCACTACTGTTTAGGGGATATCTGTATTTTTC
24380419 TATCTGCTCC
Statistics
Matches: 305, Mismatches: 39, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
249 4 0.01
250 118 0.39
251 32 0.10
252 7 0.02
255 72 0.24
256 2 0.01
258 4 0.01
259 64 0.21
260 2 0.01
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (251 bp):
AGATTTGTATTTTTCAGCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGC
TCCACTACTGTTTAGGGGATATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGAGTTAAGG
CTCGCTGTCTTCGATCTACTCCACTACTGTTTAGGGAGATCTGTAATTTTCCAGCCTATTACCCT
ACTACTTAGGGGGTCAAGACTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGG
Found at i:24380417 original size:84 final size:84
Alignment explanation
Indices: 24379723--24380418 Score: 763
Period size: 84 Copynumber: 8.2 Consensus size: 84
24379713 TAGGGAGATA
* * * * * * ** *
24379723 AGATCTGTAATTTTCAGCCTGCT-CCACTACTACTTAAGGAGATAAGGCTCACTGTTTTCGATCT
1 AGATCTGTATTTTTCAGCCTGTTACC-CTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCT
* *
24379787 GCTCCGCTACT-TCTTAGGGAGATA
65 GCTCCACTACTGT-TTA--GAG--G
* * * **
24379811 AGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCTCACTGTCTTCGATCTG
1 AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
*
24379876 CTCCACTACTGCTTAGAGAG
66 CTCCACTACTGTTTAGAG-G
* * * * *
24379896 ATAAGATCTGTAATTTTCAGCCTGTTATCCTACTGCTTAGGGAGTTAAGGCTCGTTGTCTTCGAT
1 ---AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGAT
24379961 CTGCTCCACTACTGTTTAG-GG
63 CTGCTCCACTACTGTTTAGAGG
* * *
24379982 ATAAGATCTGTAATTTTCCAGGCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGA
1 ---AGATCTGT-ATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGA
*
24380047 TCTGCTCCACTACTGTTTAGGGG
62 TCTGCTCCACTACTGTTTAGAGG
* * ** * * * *
24380070 AGATCTTTATTTTCCAAACTATCACTCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTG
1 AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
*
24380135 CTCCACTACTGTTTAGGGG
66 CTCCACTACTGTTTAGAGG
* * *
24380154 ATATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTA
1 AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
24380219 CTCCACTACTGTTTAGAGG
66 CTCCACTACTGTTTAGAGG
* * * * * *
24380238 -GATCTGTATTTTCCAGCCTATTACCCTACTGTTTAGGGGGTCAA-ACTTGCTGTCTTCGATCTA
1 AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
*
24380301 CTCCACTACTGTTTAGGGG
66 CTCCACTACTGTTTAGAGG
* * * * *
24380320 AGATTTGTATTTTTCAGCTTATTACCCTACTGCTTAGGGGGTTAAGGCTTGTTGCCTTCGATCTG
1 AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
* *
24380385 CTCCATTATTGTTTAGAGG
66 CTCCACTACTGTTTAGAGG
24380404 AGATCTGTATTTTTC
1 AGATCTGTATTTTTC
24380419 TATCTGCTCC
Statistics
Matches: 535, Mismatches: 64, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
82 35 0.07
83 78 0.15
84 186 0.35
85 7 0.01
86 15 0.03
87 66 0.12
88 146 0.27
89 2 0.00
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (84 bp):
AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
CTCCACTACTGTTTAGAGG
Found at i:24380715 original size:44 final size:44
Alignment explanation
Indices: 24380667--24380807 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
24380657 CTACTTCAGA
24380667 GAGATAAGCCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
1 GAGATAAGCCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
***** ** * * ** *
24380711 GAGATAAGACCTGCAATTTTTAACCTGCTCTC-TTGCTAATTCA-G
1 GAGATAAG-CCTGGTGGCTAAAATCTGCTC-CATAGCCGATACATG
* *
24380755 AGAGATAAGGCTGGTGGCTAAAATTTGCTCCATAGCCGATACATG
1 -GAGATAAGCCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
24380800 GAGATAAG
1 GAGATAAG
24380808 ACTCGTCATT
Statistics
Matches: 66, Mismatches: 26, Indels: 10
0.65 0.25 0.10
Matches are distributed among these distances:
43 1 0.02
44 35 0.53
45 29 0.44
46 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
GAGATAAGCCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
Found at i:24380761 original size:134 final size:133
Alignment explanation
Indices: 24380554--24380986 Score: 342
Period size: 134 Copynumber: 3.2 Consensus size: 133
24380544 GCCATTTTCG
** * * * *** *
24380554 ATCTGCTTTATAGCCGATACATGGAGATAAGATCTGTAATTCTTAATCTGCTC-CATAGCCGGTA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGTAATTTTTAATCTGCTCTC-TTGCTAATT
* *
24380618 CATGA-AGATAAGACTTGCAACTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGCCTGGTG
65 CA-GAGAGATAAGACTTGTAAC-TTCAACATGCTCTCTTGCTACTTCAGAGAGATAAGCCTGGTG
24380682 GCTAAA
128 GCTAAA
* *
24380688 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTTAACCTGCTCTCTTGCTAATTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGTAATTTTTAATCTGCTCTCTTGCTAATTC
* * ** ** ** * * * * *
24380753 AGAGAGATAAGGCTGGTGGCTAAAATTTGCTC-CATAGCCGA-TACATG-GAGATAAGACTCGTC
66 AGAGAGATAAGACTTGTAACTTCAACATGCTCTC-TTG-CTACTTCA-GAGAGATAAGCCTGGT-
*** ***
24380815 ATTTTTT
127 GGCTAAA
* * * * * * **
24380822 ATCTGTTCCATAACCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCT-TCTTACTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGTAATTTTTAATCTGCTCTCTTGCTAATTC
* * *
24380886 AG-GAAGATAAGACTTGTATCTTCAACATGCTCTTTTGCTCCTTCAGAGAGATAAGGCC-GGTGG
66 AGAG-AGATAAGACTTGTAACTTCAACATGCTCTCTTGCTACTTCAGAGAGATAA-GCCTGGTGG
24380949 CTAAA
129 CTAAA
24380954 ATCTGCTCCATAGCCGATACATGGAGATAAGAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAC
24380987 TCGCCATTTT
Statistics
Matches: 223, Mismatches: 65, Indels: 24
0.71 0.21 0.08
Matches are distributed among these distances:
132 35 0.16
133 72 0.32
134 115 0.52
135 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (133 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGTAATTTTTAATCTGCTCTCTTGCTAATTC
AGAGAGATAAGACTTGTAACTTCAACATGCTCTCTTGCTACTTCAGAGAGATAAGCCTGGTGGCT
AAA
Found at i:24381006 original size:45 final size:45
Alignment explanation
Indices: 24380953--24381229 Score: 208
Period size: 45 Copynumber: 6.2 Consensus size: 45
24380943 CGGTGGCTAA
*
24380953 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTC
* * *
24380998 GATCTGCTCCATAGCCGATACATGGAGATAAGA-TCTGTAATTCTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTC
* *
24381043 AGTCTGCTCCATAGCTGATACATGGAGATAAGAC-CTGCAATTTTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTC
* * * * * ***** **
24381088 AACCTGCTCTC-TTG-CTATTTCA-GAGAGATAAGGCT-GGTGGCTAA
1 AATCTGCTC-CATAGCCGA-TACATG-GAGATAAGACTCGCAATTTTC
* * *
24381132 AATCTGTTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTC
* ** * *
24381177 GATCTGCTTTATAGCCGATACATAGAGATAAGA-TCTGTAATTTTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTC
*
24381222 AGTCTGCT
1 AATCTGCT
24381230 TCCTTGCTAC
Statistics
Matches: 176, Mismatches: 45, Indels: 22
0.72 0.19 0.09
Matches are distributed among these distances:
43 1 0.01
44 30 0.17
45 144 0.82
46 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (45 bp):
AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTC
Found at i:24381153 original size:134 final size:134
Alignment explanation
Indices: 24380999--24381253 Score: 318
Period size: 134 Copynumber: 1.9 Consensus size: 134
24380989 GCCATTTTCG
* * *
24380999 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCTGTAATTCTC-AGTCTGCTCCATAGCTGAT
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACTC-GCAATTCTCGA-TCTGCTCCATAGCCGAT
* ** *
24381062 ACATGGAGATAAGACCTGCAATTTTCAACCTGC-TCTCTTGCTATTTCAGAGAGATAAGGCTGGT
64 ACATAGAGATAAGACCTGCAATTTTCAACCTGCTTC-CTTGCTACCTCAGAAAGATAAGGCTGGT
24381126 GGCTAAA
128 GGCTAAA
* * * **
24381133 ATCTGTTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTCGATCTGCTTTATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCAATTCTCGATCTGCTCCATAGCCGATAC
* * **
24381198 ATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAG
66 ATAGAGATAAGACCTGCAATTTTCAACCTGCTTCCTTGCTACCTCAGAAAGATAAG
24381254 ACTTGTATCT
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
134 97 0.95
135 5 0.05
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (134 bp):
ATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCAATTCTCGATCTGCTCCATAGCCGATAC
ATAGAGATAAGACCTGCAATTTTCAACCTGCTTCCTTGCTACCTCAGAAAGATAAGGCTGGTGGC
TAAA
Found at i:24381184 original size:89 final size:88
Alignment explanation
Indices: 24380420--24381176 Score: 494
Period size: 89 Copynumber: 8.5 Consensus size: 88
24380410 GTATTTTTCT
* *
24380420 ATCTGCTCCATAGCCGATACATGGAAATAAGAC-CTGTAATTTTCAACCTGCTCTCTTGCTACCT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCAACCTGCTCTCTTGCTA--T
*
24380484 T-AGAGAGATAAGGTTGGTGGCTAAA
63 TCAGAGAGATAAGGCTGGTGGCTAAA
* * * * * * * * * * * * * * *
24380509 ATTTGTTCTATAACTGATACATAGAGATAGGACTCGCCATTTTCGATCTGCTTTATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCAACCTGCTCTCTTG-CTATTC
* ** *
24380574 ATG-GAGATAAGATCT-GTAATTCT-TA
65 A-GAGAGATAAG-GCTGGT--GGCTAAA
* * * *
24380599 ATCTGCTCCATAGCCGGTACATGAAGATAAGACTTGCAACTTTCAACCTGCTCTCTTGCTACTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCAACCTGCTCTCTTGCTA-TTC
*
24380664 AGAGAGATAAGCCTGGTGGCTAAA
65 AGAGAGATAAGGCTGGTGGCTAAA
*
24380688 ATCTGCTCCATAGCCGATACATGGAGATAAGAC-CTGCAATTTTTAACCTGCTCTCTTGCTAATT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCAACCTGCTCTCTTGCT-ATT
24380752 CAGAGAGATAAGGCTGGTGGCTAAA
64 CAGAGAGATAAGGCTGGTGGCTAAA
* ** * * ** *
24380777 ATTTGCTCCATAGCCGATACATGGAGATAAGACTCGTC-ATTTTTTATCTGTTC-CATAACCGAT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCG-CAATTTTCAACCTGCTCTC-T-TGCTAT
* * *** **
24380840 ACATG-GAGATAAGATCT-GTAATTTTCA
63 TCA-GAGAGATAAG-GCTGGT-GGCTAAA
* * * * * * *
24380867 GTCTGCTTCTTACTA-CC--T-CA-GGAAGATAAGACTTG-TATCTTCAACATGCTCTTTTGCTC
1 ATCTGC-TC-CA-TAGCCGATACATGG-AGATAAGACTCGCAATTTTCAACCTGCTCTCTTGCT-
* *
24380926 CTTCAGAGAGATAAGGCCGGTGGCTAAA
61 ATTCAGAGAGATAAGGCTGGTGGCTAAA
* * * * * *
24380954 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTC-CATAGCCGATA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCAACCTGCTCTC-TTG-CTATT
* ** *
24381018 CATG-GAGATAAGATCT-GTAATTCT-CA
64 CA-GAGAGATAAG-GCTGGT--GGCTAAA
* *
24381044 GTCTGCTCCATAGCTGATACATGGAGATAAGAC-CTGCAATTTTCAACCTGCTCTCTTGCTATTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCAACCTGCTCTCTTGCTA-TT
24381108 CAGAGAGATAAGGCTGGTGGCTAAA
64 CAGAGAGATAAGGCTGGTGGCTAAA
* * *
24381133 ATCTGTTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTC
24381177 GATCTGCTTT
Statistics
Matches: 497, Mismatches: 123, Indels: 96
0.69 0.17 0.13
Matches are distributed among these distances:
84 2 0.00
85 3 0.01
86 2 0.00
87 11 0.02
88 44 0.09
89 283 0.57
90 140 0.28
91 7 0.01
92 3 0.01
93 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (88 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCAACCTGCTCTCTTGCTATTCA
GAGAGATAAGGCTGGTGGCTAAA
Found at i:24381230 original size:356 final size:357
Alignment explanation
Indices: 24380689--24381407 Score: 1183
Period size: 356 Copynumber: 2.0 Consensus size: 357
24380679 GTGGCTAAAA
*
24380689 TCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTTAACCTGCTCTCTTGCTAATTCA
1 TCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTAATTCA
* * *
24380754 GAGAGATAAGGCTGGTGGCTAAAATTTGCTCCATAGCCGATACATGGAGATAAGACTCGTCATTT
66 GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTT
** *
24380819 TTTATCTGTTCCATAACCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTT-CTTACTAC
131 TCGATCTGTTCCATAACCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTACTAC
* * * *
24380883 CTCAGGAAGATAAGACTTGTATCTTCAACATGCTCTTTTGCT-CCTTCAGAGAGATAAGGCCGGT
196 CTCAGAAAGATAAGACTTGTATCTTCAAAATGCTCTCTTGCTATC-TCAGAGAGATAAGGCCGGT
*
24380947 GGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAG
260 GGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCGATCTGCTCCATAG
24381012 CCGATACATGGAGATAAGATCTGTAATTCTCAG
325 CCGATACATGGAGATAAGATCTGTAATTCTCAG
* *
24381045 TCTGCTCCATAGCTGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTATTTCA
1 TCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTAATTCA
*
24381110 GAGAGATAAGGCTGGTGGCTAAAATCTGTTCCATAGCCGATACATAGAGATAAGACTCGCCATTT
66 GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTT
* * *
24381175 TCGATCTGCTT-TATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTA
131 TCGATCTG-TTCCATAACCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTACTA
* *
24381239 CCTCAGAAAGATAAGACTTGTATCTTTAAAATGTTCTCTTGCTATCTCAGAGAGATAAGGCCGGT
195 CCTCAGAAAGATAAGACTTGTATCTTCAAAATGCTCTCTTGCTATCTCAGAGAGATAAGGCCGGT
* *
24381304 GGCTAAAATCTGCTCCATAGCTGATACATGGAGATAAGACTCACCATTTTCGATCTGTTCCATAG
260 GGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCGATCTGCTCCATAG
* *
24381369 CCGATTCATGGAGATAAGATCTGTAATTTTCAG
325 CCGATACATGGAGATAAGATCTGTAATTCTCAG
24381402 TCTGCT
1 TCTGCT
24381408 TCCTTGCTAC
Statistics
Matches: 336, Mismatches: 24, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
356 171 0.51
357 164 0.49
358 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (357 bp):
TCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTAATTCA
GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTT
TCGATCTGTTCCATAACCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTACTAC
CTCAGAAAGATAAGACTTGTATCTTCAAAATGCTCTCTTGCTATCTCAGAGAGATAAGGCCGGTG
GCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCGATCTGCTCCATAGC
CGATACATGGAGATAAGATCTGTAATTCTCAG
Found at i:24381357 original size:178 final size:178
Alignment explanation
Indices: 24380729--24381437 Score: 1013
Period size: 178 Copynumber: 4.0 Consensus size: 178
24380719 ACCTGCAATT
* * *
24380729 TTTAACCTGCTCTCTTGCTAAT-TCAGAGAGATAAGGCTGGTGGCTAAAATTTGCTCCATAGCCG
1 TTTAACATGCTCTCTTGCT-ATCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCG
* ** *
24380793 ATACATGGAGATAAGACTCGTCATTTTTTATCTGTTCCATAACCGATACATGGAGATAAGATCTG
65 ATACATGGAGATAAGACTCGCCATTTTCGATCTGTTCCATAGCCGATACATGGAGATAAGATCTG
*
24380858 TAATTTTCAGTCTGCTT-CTTACTACCTCAGGAAGATAAGACTTGTATC
130 TAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATC
* * *
24380906 TTCAACATGCTCTTTTGCT-CCTTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCG
1 TTTAACATGCTCTCTTGCTATC-TCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCG
*
24380970 ATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTG
65 ATACATGGAGATAAGACTCGCCATTTTCGATCTGTTCCATAGCCGATACATGGAGATAAGATCTG
* * * *
24381035 TAATTCTCAGTCTGC-TCCATAGCTGA--TACATGG-AGATAAGACCTGCAAT-
130 TAATTTTCAGTCTGCTTCC-TTGCT-ACCT-CA-GGAAGATAAGACTTG-TATC
* * * *
24381084 TTTCAACCTGCTCTCTTGCTATTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGTTCCATAGCCG
1 TTT-AACATGCTCTCTTGCTATCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCG
* * *
24381149 ATACATAGAGATAAGACTCGCCATTTTCGATCTGCTT-TATAGCCGATACATAGAGATAAGATCT
65 ATACATGGAGATAAGACTCGCCATTTTCGATCTG-TTCCATAGCCGATACATGGAGATAAGATCT
*
24381213 GTAATTTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTTGTATC
129 GTAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATC
* * *
24381263 TTTAAAATGTTCTCTTGCTATCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCTGA
1 TTTAACATGCTCTCTTGCTATCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGA
* *
24381328 TACATGGAGATAAGACTCACCATTTTCGATCTGTTCCATAGCCGATTCATGGAGATAAGATCTGT
66 TACATGGAGATAAGACTCGCCATTTTCGATCTGTTCCATAGCCGATACATGGAGATAAGATCTGT
24381393 AATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGT
131 AATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGT
24381438 GAATTCACCG
Statistics
Matches: 470, Mismatches: 45, Indels: 33
0.86 0.08 0.06
Matches are distributed among these distances:
176 1 0.00
177 134 0.29
178 178 0.38
179 152 0.32
180 5 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (178 bp):
TTTAACATGCTCTCTTGCTATCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGA
TACATGGAGATAAGACTCGCCATTTTCGATCTGTTCCATAGCCGATACATGGAGATAAGATCTGT
AATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATC
Found at i:24385839 original size:19 final size:19
Alignment explanation
Indices: 24385798--24385839 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
24385788 TGTGAAGTTT
*
24385798 AATGCACATGATGCAATGC
1 AATGCAAATGATGCAATGC
*
24385817 AATGCAAATGCATGGAATG-
1 AATGCAAATG-ATGCAATGC
24385836 AATG
1 AATG
24385840 AAAAAGAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (19 bp):
AATGCAAATGATGCAATGC
Found at i:24388161 original size:4 final size:4
Alignment explanation
Indices: 24388152--24388176 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
24388142 AAAAAATGTA
24388152 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
24388177 GAATGTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:24388280 original size:43 final size:44
Alignment explanation
Indices: 24388233--24388317 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 44
24388223 TAATGATAAT
* * * *
24388233 AATATTAGTATATAAATACAAA-TAAAAATATAATAATAGTAGA
1 AATATAAGTAGATAAATAAAAATTAAAAACATAATAATAGTAGA
* *
24388276 AATATAAGTAGATAAATAAAAATTAGATACATAATAATAGTA
1 AATATAAGTAGATAAATAAAAATTAAAAACATAATAATAGTA
24388318 TTAGAATAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
43 19 0.54
44 16 0.46
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.29
Consensus pattern (44 bp):
AATATAAGTAGATAAATAAAAATTAAAAACATAATAATAGTAGA
Done.