Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 71 of 335
Found at i:24388863 original size:5 final size:5
Alignment explanation
Indices: 24388855--24388886 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
24388845 CTAATTTAAT
24388855 AATAA AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AA
24388887 ATAATATCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:24389952 original size:20 final size:21
Alignment explanation
Indices: 24389918--24389971 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
24389908 TGATGATATT
*
24389918 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
24389939 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
24389959 TTTTATTATTTTA
1 TTATATTATTTTA
24389972 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:24389975 original size:3 final size:3
Alignment explanation
Indices: 24389957--24390005 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
24389947 TTTAATGAGA
*
24389957 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
24390002 TAT T
1 TAT T
24390006 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:24389977 original size:11 final size:11
Alignment explanation
Indices: 24389961--24389999 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
24389951 ATGAGATATT
24389961 TTATTATTTTA
1 TTATTATTTTA
*
24389972 TTATTATTTCA
1 TTATTATTTTA
24389983 TTATTATTTTA
1 TTATTATTTTA
24389994 TTATTA
1 TTATTA
24390000 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:24389985 original size:19 final size:19
Alignment explanation
Indices: 24389957--24389998 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
24389947 TTTAATGAGA
*
24389957 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
24389976 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
24389995 TATT
1 TATT
24389999 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:24392203 original size:46 final size:46
Alignment explanation
Indices: 24392136--24392317 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
24392126 AGTGTGCTCT
*
24392136 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24392182 CTGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
24392228 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
24392274 ATGACA-GAAAATGAGTAAGACCGTAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
24392318 TCATGTCAAA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 121 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:24394215 original size:22 final size:24
Alignment explanation
Indices: 24394185--24394234 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
24394175 ACAGATACGC
*
24394185 GAATTTCC-ACCCAAACACA-CCA
1 GAATGTCCAACCCAAACACACCCA
*
24394207 GAATGTCCAACTCAAACACACCCA
1 GAATGTCCAACCCAAACACACCCA
24394231 GAAT
1 GAAT
24394235 ATTTTAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 7 0.29
23 10 0.42
24 7 0.29
ACGTcount: A:0.42, C:0.36, G:0.08, T:0.14
Consensus pattern (24 bp):
GAATGTCCAACCCAAACACACCCA
Found at i:24397018 original size:39 final size:38
Alignment explanation
Indices: 24396967--24397087 Score: 170
Period size: 39 Copynumber: 3.1 Consensus size: 38
24396957 AATTATATTA
*
24396967 CCAGCACAAAGCCTGCTGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTT
* * *
24397006 CCTGCACGAAGCCTACGAGACTTTAGCCCGAATACATTT
1 CCAGCACGAAGCCTGCG-GACTTTAGCCCGGATACATTT
*
24397045 CCAGCACGAAGCCTGCGGGACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTT
24397084 CCAG
1 CCAG
24397088 TATCTTGCAT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 70 0.97
40 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.21
Consensus pattern (38 bp):
CCAGCACGAAGCCTGCGGACTTTAGCCCGGATACATTT
Found at i:24399340 original size:12 final size:12
Alignment explanation
Indices: 24399325--24399355 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
24399315 TTCTCTTTTA
24399325 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
24399337 TTTTTCTTTCTC
1 TTTTTCTTTCCC
24399349 TTTTTCT
1 TTTTTCT
24399356 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:24399752 original size:15 final size:14
Alignment explanation
Indices: 24399734--24399764 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
24399724 TTAATTTATT
24399734 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
24399749 TAATAATAATCTAA
1 TAATAATAATCTAA
24399763 TA
1 TA
24399765 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:24399775 original size:21 final size:20
Alignment explanation
Indices: 24399751--24399819 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
24399741 AATGCTAATA
24399751 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
24399772 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
24399791 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
24399812 ATAATAAT
1 ATAATAAT
24399820 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:24400833 original size:13 final size:13
Alignment explanation
Indices: 24400815--24400839 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24400805 AAAGTGCCCA
24400815 ACCCAACTCAATT
1 ACCCAACTCAATT
24400828 ACCCAACTCAAT
1 ACCCAACTCAAT
24400840 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (13 bp):
ACCCAACTCAATT
Found at i:24400917 original size:26 final size:26
Alignment explanation
Indices: 24400867--24400917 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24400857 ATTTAATAAA
* *
24400867 TAAAAATAAAAATAAAAATCTTATAC
1 TAAAAATAAAAATAAAAAACATATAC
24400893 TAAAAATAAAAATAAAAAACATATA
1 TAAAAATAAAAATAAAAAACATATA
24400918 ATTTTATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (26 bp):
TAAAAATAAAAATAAAAAACATATAC
Found at i:24400944 original size:9 final size:9
Alignment explanation
Indices: 24400930--24400970 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
24400920 TTTATACAAA
24400930 TAATTCGGT
1 TAATTCGGT
*
24400939 TAATTCAGT
1 TAATTCGGT
* *
24400948 TAATTTGGA
1 TAATTCGGT
24400957 TAATTCGGT
1 TAATTCGGT
24400966 TAATT
1 TAATT
24400971 TTATACTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:24402851 original size:28 final size:23
Alignment explanation
Indices: 24402794--24402854 Score: 61
Period size: 28 Copynumber: 2.5 Consensus size: 23
24402784 TGAATTGAAA
24402794 ATTG-ATTGAAAAGTGGAAAATG
1 ATTGAATTGAAAAGTGGAAAATG
*
24402816 ATTAAATTGAAAACGTGAGAAAATTGCG
1 ATTGAATTGAAAA-GTG-GAAAA-T--G
24402844 ATTGAATTGAA
1 ATTGAATTGAA
24402855 TTGAGATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 3 0.10
23 8 0.26
24 3 0.10
25 5 0.16
26 1 0.03
28 11 0.35
ACGTcount: A:0.46, C:0.03, G:0.23, T:0.28
Consensus pattern (23 bp):
ATTGAATTGAAAAGTGGAAAATG
Found at i:24403064 original size:38 final size:39
Alignment explanation
Indices: 24402963--24403064 Score: 109
Period size: 38 Copynumber: 2.6 Consensus size: 39
24402953 ACCTCGAGTT
**
24402963 GATGAGACACTGGGTGTCATACTGTTACTTCGGATAGATTC
1 GATGAGACACTGGGTGTCA-ACT-TTACTTCGGATAGAGCC
** * * *
24403004 GATGAGGTACTGGGT-ACCACTTTACTTCGGCTAG-GCC
1 GATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGCC
24403041 GATGAGACACTGGGTGTCAACTTT
1 GATGAGACACTGGGTGTCAACTTT
24403065 GCTTTGAACT
Statistics
Matches: 49, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
37 14 0.29
38 18 0.37
39 3 0.06
40 1 0.02
41 13 0.27
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
GATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGCC
Found at i:24403767 original size:10 final size:10
Alignment explanation
Indices: 24403748--24403781 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
24403738 TAAAAAAATA
24403748 CCTT-TTTTT
1 CCTTCTTTTT
24403757 CCTTCTTTTT
1 CCTTCTTTTT
*
24403767 CGTTCTTTTT
1 CCTTCTTTTT
24403777 CCTTC
1 CCTTC
24403782 CCTCCCTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.00, C:0.29, G:0.03, T:0.68
Consensus pattern (10 bp):
CCTTCTTTTT
Found at i:24403860 original size:3 final size:3
Alignment explanation
Indices: 24403844--24403921 Score: 74
Period size: 3 Copynumber: 27.0 Consensus size: 3
24403834 GTGCCTCCTC
* * *
24403844 CTT CTC CTT ATT CTT CTT C-T CTT CTT -TT CTT CTT CTT CTT CTT CTC
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* *
24403890 CTT -TT CTT -TT TTT CTT CTA CTT CTTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT CTT
24403922 AGTCGAAATG
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
2 8 0.13
3 50 0.82
4 3 0.05
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:24403882 original size:22 final size:22
Alignment explanation
Indices: 24403854--24403921 Score: 86
Period size: 22 Copynumber: 3.1 Consensus size: 22
24403844 CTTCTCCTTA
24403854 TTCTTCTTCTCTTCTTTTCTTC
1 TTCTTCTTCTCTTCTTTTCTTC
*
24403876 TTCTTCTTCTTCTCCTTTTCTT-
1 TTCTTCTTC-TCTTCTTTTCTTC
*
24403898 TTTTTCTTCTACTTC-TTTCTTC
1 TTCTTCTTCT-CTTCTTTTCTTC
24403920 TT
1 TT
24403922 AGTCGAAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 7 0.17
22 22 0.55
23 11 0.28
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.69
Consensus pattern (22 bp):
TTCTTCTTCTCTTCTTTTCTTC
Found at i:24403885 original size:28 final size:28
Alignment explanation
Indices: 24403844--24403920 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
24403834 GTGCCTCCTC
* *
24403844 CTTCTCCTTATTCTTCTTCTCTTCTTTT
1 CTTCTTCTTCTTCTTCTTCTCTTCTTTT
* *
24403872 CTTCTTCTTCTTCTTCTCCTTTTCTTTT
1 CTTCTTCTTCTTCTTCTTCTCTTCTTTT
* *
24403900 TTTCTTCTACTTCTTTCTTCT
1 CTTCTTCTTCTTC-TTCTTCT
24403921 TAGTCGAAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 35 0.85
29 6 0.15
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (28 bp):
CTTCTTCTTCTTCTTCTTCTCTTCTTTT
Found at i:24404118 original size:19 final size:19
Alignment explanation
Indices: 24404096--24404140 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
24404086 TTTTTACAAC
24404096 TTTTTTTTCAGATTTTGTT
1 TTTTTTTTCAGATTTTGTT
*
24404115 TTTTTTTTTAGATTTTGTT
1 TTTTTTTTCAGATTTTGTT
24404134 TTTTTTT
1 TTTTTTT
24404141 AAACAAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.09, C:0.02, G:0.09, T:0.80
Consensus pattern (19 bp):
TTTTTTTTCAGATTTTGTT
Found at i:24405292 original size:42 final size:42
Alignment explanation
Indices: 24405229--24405352 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 42
24405219 CGTTTTCCCG
** *
24405229 ATGCCATAGTTCAACTATGGTCTTACACATATTCACATAAT-G
1 ATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-ATCA
* *
24405271 ATGCCATAGCCCAGC-ATTGGTCTTACACATATTCATATATCA
1 ATGCCATAGCCCAACTA-TGGTCTTACACATATTCACATATCA
24405313 ATGCCATAGCCCAACTATGGTCTTACACGA-A-TCACATATC
1 ATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATATC
24405353 TCACTGATGC
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
41 11 0.15
42 58 0.82
43 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATTCACATATCA
Found at i:24405494 original size:31 final size:31
Alignment explanation
Indices: 24405459--24405700 Score: 371
Period size: 31 Copynumber: 7.8 Consensus size: 31
24405449 CTTGTCACTT
* * *
24405459 GTAGCCGAAGCTACTACTATTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
24405490 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
24405521 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
24405552 GTAGCCGTAA-CTACCACTTTTCACTGATCAG
1 GTAGCCG-AAGCTACCACTTTTCACTGATCAG
*
24405583 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
24405614 GTTGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
24405645 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
24405676 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
24405701 TGTCATTTGT
Statistics
Matches: 194, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
30 5 0.03
31 184 0.95
32 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:24405782 original size:50 final size:51
Alignment explanation
Indices: 24405676--24405804 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
24405666 CACTGATCAG
* * *
24405676 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
24405727 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
*
24405777 GTAGCCGAAACTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
24405805 TGACATGGTC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:24408226 original size:23 final size:23
Alignment explanation
Indices: 24408200--24408251 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
24408190 TTATTGCAAC
24408200 AACAAAAAAAATTAAGAGAACGA
1 AACAAAAAAAATTAAGAGAACGA
24408223 AACAAAAAAAATTAAGAGAACGA
1 AACAAAAAAAATTAAGAGAACGA
24408246 AACAAA
1 AACAAA
24408252 GGTAAGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.71, C:0.10, G:0.12, T:0.08
Consensus pattern (23 bp):
AACAAAAAAAATTAAGAGAACGA
Found at i:24426287 original size:25 final size:26
Alignment explanation
Indices: 24426259--24426313 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
24426249 TACATGAGTG
24426259 GTAAGTA-CGTCATCTTTGATCCTTT
1 GTAAGTAGCGTCATCTTTGATCCTTT
*
24426284 GTAATTAGCGTCATCTTTGATCCTTT
1 GTAAGTAGCGTCATCTTTGATCCTTT
24426310 GTAA
1 GTAA
24426314 TTAGACTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 6 0.21
26 22 0.79
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.44
Consensus pattern (26 bp):
GTAAGTAGCGTCATCTTTGATCCTTT
Found at i:24426295 original size:26 final size:26
Alignment explanation
Indices: 24426266--24426317 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
24426256 GTGGTAAGTA
24426266 CGTCATCTTTGATCCTTTGTAATTAG
1 CGTCATCTTTGATCCTTTGTAATTAG
24426292 CGTCATCTTTGATCCTTTGTAATTAG
1 CGTCATCTTTGATCCTTTGTAATTAG
24426318 ACTTGGTGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (26 bp):
CGTCATCTTTGATCCTTTGTAATTAG
Found at i:24428314 original size:22 final size:22
Alignment explanation
Indices: 24428275--24428333 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
24428265 GTTTTAAGAA
*
24428275 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
24428296 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
24428318 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
24428334 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:24428350 original size:26 final size:24
Alignment explanation
Indices: 24428304--24428363 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
24428294 ATTTGTTTTA
*
24428304 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
24428328 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
24428354 TTTTTTATTT
1 ATATTTATTT
24428364 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:24428859 original size:25 final size:27
Alignment explanation
Indices: 24428821--24428880 Score: 74
Period size: 25 Copynumber: 2.3 Consensus size: 27
24428811 TATATGTCAA
24428821 AATTAT-TAATAAATTTAATTT-AT-T
1 AATTATATAATAAATTTAATTTGATGT
*
24428845 ATATTATATAA-AAATTTGATTTGATGT
1 A-ATTATATAATAAATTTAATTTGATGT
24428872 AATTATATA
1 AATTATATA
24428881 TAATTTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
24 1 0.03
25 15 0.48
26 13 0.42
27 2 0.06
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (27 bp):
AATTATATAATAAATTTAATTTGATGT
Found at i:24428916 original size:22 final size:22
Alignment explanation
Indices: 24428891--24428932 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
24428881 TAATTTTTTT
24428891 TTTA-TTTTTATACATTTAAAAA
1 TTTAGTTTTTAT-CATTTAAAAA
*
24428913 TTTAGTTTTTATTATTTAAA
1 TTTAGTTTTTATCATTTAAA
24428933 TCTAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTAGTTTTTATCATTTAAAAA
Found at i:24429335 original size:23 final size:23
Alignment explanation
Indices: 24429309--24429383 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
24429299 AATATGTGTT
24429309 TAAAAATAACATATAATAAATAA
1 TAAAAATAACATATAATAAATAA
* * * * **
24429332 TAAAATGTATCACT-T-GTAACTTT
1 TAAAA-ATAACA-TATAATAAATAA
24429355 TAAAAATAACATATAATAAATAA
1 TAAAAATAACATATAATAAATAA
24429378 TAAAAA
1 TAAAAA
24429384 ATCATTTTAG
Statistics
Matches: 36, Mismatches: 12, Indels: 8
0.64 0.21 0.14
Matches are distributed among these distances:
21 1 0.03
22 5 0.14
23 24 0.67
24 5 0.14
25 1 0.03
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.31
Consensus pattern (23 bp):
TAAAAATAACATATAATAAATAA
Found at i:24430536 original size:3 final size:3
Alignment explanation
Indices: 24430528--24430564 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
24430518 CCTCCTACAT
* *
24430528 CCA CCA CCA CCA CCA CCA CCA CAA CCA CAA CCA CCA C
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA C
24430565 GCCAACCACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:24433696 original size:18 final size:18
Alignment explanation
Indices: 24433673--24433707 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
24433663 GGAACCAGAA
24433673 GTTAAAGTATCTAGTACT
1 GTTAAAGTATCTAGTACT
24433691 GTTAAAGTATCTAGTAC
1 GTTAAAGTATCTAGTAC
24433708 AGACGATCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.37
Consensus pattern (18 bp):
GTTAAAGTATCTAGTACT
Found at i:24445897 original size:17 final size:18
Alignment explanation
Indices: 24445877--24445919 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
24445867 TTTTTTTAAG
24445877 TTTTATATTT-TTTA-TTA
1 TTTTAT-TTTGTTTATTTA
24445894 TTTTATTTTGTTTATTTA
1 TTTTATTTTGTTTATTTA
24445912 -TTTATTTT
1 TTTTATTTT
24445920 ATTTTTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 3 0.12
17 18 0.75
18 3 0.12
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTATTTTGTTTATTTA
Found at i:24445902 original size:22 final size:22
Alignment explanation
Indices: 24445882--24445924 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
24445872 TTAAGTTTTA
24445882 TATTT-TTTA-TTATTTTATTT
1 TATTTATTTATTTATTTTATTT
*
24445902 TGTTTATTTATTTATTTTATTT
1 TATTTATTTATTTATTTTATTT
24445924 T
1 T
24445925 TTGTTATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.20
21 4 0.20
22 12 0.60
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (22 bp):
TATTTATTTATTTATTTTATTT
Found at i:24446004 original size:20 final size:21
Alignment explanation
Indices: 24445973--24446033 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
24445963 AATGTTTTAT
24445973 AATATATATTTTTTAAAATTTT-
1 AATAT-TATTTTTT-AAATTTTG
*
24445995 AA-ATTATTTTTTTAATTTTG
1 AATATTATTTTTTAAATTTTG
24446015 AATATTATTTTTTTAAATT
1 AATATTA-TTTTTTAAATT
24446034 ATGTCTTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 6 0.18
20 10 0.29
21 6 0.18
22 12 0.35
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
AATATTATTTTTTAAATTTTG
Found at i:24446007 original size:21 final size:21
Alignment explanation
Indices: 24445967--24446031 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
24445957 ATTTGAAATG
24445967 TTTTATAATATATATTTTTTAAAA
1 TTTTA-AAT-TAT-TTTTTTAAAA
24445991 TTTTAAATTATTTTTTT--AA
1 TTTTAAATTATTTTTTTAAAA
24446010 TTTTGAATATTATTTTTTTAAA
1 TTTT-AA-ATTATTTTTTTAAA
24446032 TTATGTCTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
19 6 0.16
20 2 0.05
21 17 0.46
22 3 0.08
23 4 0.11
24 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTTAAATTATTTTTTTAAAA
Found at i:24446108 original size:31 final size:33
Alignment explanation
Indices: 24446070--24446148 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
24446060 TTTGAAATTA
24446070 ATTTTTCTAAATTTT-AAATTTT-AAATATATT
1 ATTTTTCTAAATTTTAAAATTTTAAAATATATT
24446101 ATTTTTCTAAATTTTAAAATTTTAAAATATATT
1 ATTTTTCTAAATTTTAAAATTTTAAAATATATT
24446134 ATTTTTCTAAATTTT
1 ATTTTTCTAAATTTT
24446149 TGAAATTAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
31 15 0.33
32 7 0.15
33 24 0.52
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (33 bp):
ATTTTTCTAAATTTTAAAATTTTAAAATATATT
Found at i:24446177 original size:15 final size:13
Alignment explanation
Indices: 24446143--24446169 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24446133 TATTTTTCTA
24446143 AATTTTTGAAATT
1 AATTTTTGAAATT
24446156 AATTTTTGAAATT
1 AATTTTTGAAATT
24446169 A
1 A
24446170 TAATTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (13 bp):
AATTTTTGAAATT
Found at i:24446284 original size:19 final size:19
Alignment explanation
Indices: 24446260--24446316 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 19
24446250 TTAAATATTA
*
24446260 TTAAAAATATATTTAATAT
1 TTAAAAATATATTTAAAAT
24446279 TTAAAAATAATATTTAAAAT
1 TTAAAAAT-ATATTTAAAAT
24446299 TTAAAAATA-ATTTCAAAA
1 TTAAAAATATATTT-AAAA
24446317 ATATATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 4 0.11
19 13 0.37
20 18 0.51
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
TTAAAAATATATTTAAAAT
Found at i:24446285 original size:20 final size:20
Alignment explanation
Indices: 24446260--24446309 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
24446250 TTAAATATTA
*
24446260 TTAAAAAT-ATATTTAATAT
1 TTAAAAATAATATTTAAAAT
24446279 TTAAAAATAATATTTAAAAT
1 TTAAAAATAATATTTAAAAT
24446299 TTAAAAATAAT
1 TTAAAAATAAT
24446310 TTCAAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 8 0.28
20 21 0.72
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TTAAAAATAATATTTAAAAT
Found at i:24446291 original size:13 final size:13
Alignment explanation
Indices: 24446273--24446297 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24446263 AAAATATATT
24446273 TAATATTTAAAAA
1 TAATATTTAAAAA
24446286 TAATATTTAAAA
1 TAATATTTAAAA
24446298 TTTAAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:24446349 original size:36 final size:35
Alignment explanation
Indices: 24446277--24446479 Score: 188
Period size: 36 Copynumber: 5.7 Consensus size: 35
24446267 TATATTTAAT
24446277 ATTT-AAAAATA-ATATTTAAAATTTA-A-AAATA
1 ATTTCAAAAATATATATTTAAAATTTATAGAAATA
*
24446308 ATTTCAAAAATATATTTTTAAAATTTATACGAAATA
1 ATTTCAAAAATATATATTTAAAATTTATA-GAAATA
24446344 ATTTCAAAAATATATATTTAAAATTTAAAATTTAGAAAAATTA
1 ATTTCAAAAATATATATTTAAAATTT---A--TAG--AAA-TA
* * *
24446387 ATTTCAAATATATATTTTTAAAATTTATAAGACATA
1 ATTTCAAAAATATATATTTAAAATTTAT-AGAAATA
* * *
24446423 ATTTTAAAAA-ATAATATTCAAAATTTA-AAAAATA
1 ATTTCAAAAATAT-ATATTTAAAATTTATAGAAATA
24446457 ATTT-AAAAATA-ATATTTAAAATT
1 ATTTCAAAAATATATATTTAAAATT
24446480 GAAATTATTT
Statistics
Matches: 144, Mismatches: 12, Indels: 31
0.77 0.06 0.17
Matches are distributed among these distances:
31 4 0.03
32 18 0.12
33 18 0.12
34 11 0.08
35 2 0.01
36 52 0.36
37 2 0.01
38 1 0.01
39 3 0.02
40 2 0.01
41 2 0.01
42 3 0.02
43 26 0.18
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.40
Consensus pattern (35 bp):
ATTTCAAAAATATATATTTAAAATTTATAGAAATA
Found at i:24446373 original size:43 final size:43
Alignment explanation
Indices: 24446324--24446413 Score: 128
Period size: 43 Copynumber: 2.1 Consensus size: 43
24446314 AAAATATATT
* *
24446324 TTTAAAATTTATACGAAA-TAATTTCAAAAATATATATTTAAAA
1 TTTAAAATTTAGA-AAAATTAATTTCAAAAATATATATTTAAAA
* *
24446367 TTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAA
1 TTTAAAATTTAGAAAAATTAATTTCAAAAATATATATTTAAAA
24446410 TTTA
1 TTTA
24446414 TAAGACATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 3 0.07
43 39 0.93
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.43
Consensus pattern (43 bp):
TTTAAAATTTAGAAAAATTAATTTCAAAAATATATATTTAAAA
Found at i:24446393 original size:79 final size:76
Alignment explanation
Indices: 24446290--24446778 Score: 385
Period size: 79 Copynumber: 6.1 Consensus size: 76
24446280 TAAAAATAAT
*
24446290 ATTTAAAATTTAAAAATAATTTCAAAAATATATTTTTAAAATTTATACGAAATAATTTC-AAAAA
1 ATTTAAAATTTAAAAATAATTTCAAAAATATATTTTTAAAATTTATAAGAAATAATTTCAAAAAA
*
24446354 TATATATTTAAA
66 TA-ATATTCAAA
* * *
24446366 ATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTATAAGACATAATTTTAAA
1 ATTTAAAATTT--AAAAA-TAATTTCAAAAATATATTTTTAAAATTTATAAGAAATAATTTCAAA
24446431 AAATAATATTCAAA
63 AAATAATATTCAAA
* * * * ** *
24446445 ATTTAAAAAATAATTTAAAAATAATATTTAAAATTGAAATTATTTCATTTTGTTTAA-AAATATA
1 ATTT----AA-AATTTAAAAATAAT-TTCAAAAAT-ATATT-TTTAAAATT-TATAAGAAATA-A
** *
24446509 TTTTTAAAAAT-ATATTTAAA
56 TTTCAAAAAATAATATTCAAA
* * *
24446529 ATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTATAAGACATAATTTTAAA
1 ATTTAAAATTT--AAAAA-TAATTTCAAAAATATATTTTTAAAATTTATAAGAAATAATTTCAAA
24446594 AAATAATATTCAAA
63 AAATAATATTCAAA
* * * * ** *
24446608 ATTTAAAAAATAATTTAAAAATAATATTTAAAATTGAAATTATTTCATTTTGTTTAA-AAATATA
1 ATTT----AA-AATTTAAAAATAAT-TTCAAAAAT-ATATT-TTTAAAATT-TATAAGAAATA-A
** *
24446672 TTTTTAAAAAT-ATATTTAAA
56 TTTCAAAAAATAATATTCAAA
* * * *
24446692 ATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTGTAAGACATAATTTTAAA
1 ATTTAAAATTT--AAAAA-TAATTTCAAAAATATATTTTTAAAATTTATAAGAAATAATTTCAAA
24446757 AAATAATATTCAAA
63 AAATAATATTCAAA
24446771 ATTTAAAA
1 ATTTAAAA
24446779 AATAATTTAA
Statistics
Matches: 330, Mismatches: 49, Indels: 65
0.74 0.11 0.15
Matches are distributed among these distances:
76 11 0.03
78 35 0.11
79 109 0.33
80 19 0.06
81 30 0.09
82 30 0.09
83 12 0.04
84 54 0.16
85 30 0.09
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (76 bp):
ATTTAAAATTTAAAAATAATTTCAAAAATATATTTTTAAAATTTATAAGAAATAATTTCAAAAAA
TAATATTCAAA
Found at i:24446451 original size:21 final size:20
Alignment explanation
Indices: 24446425--24446466 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
24446415 AAGACATAAT
*
24446425 TTTAAAAAATAATATTCAAAA
1 TTTAAAAAATAAT-TTAAAAA
24446446 TTTAAAAAATAATTTAAAAA
1 TTTAAAAAATAATTTAAAAA
24446466 T
1 T
24446467 AATATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
TTTAAAAAATAATTTAAAAA
Found at i:24446516 original size:14 final size:14
Alignment explanation
Indices: 24446497--24446525 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24446487 TTTCATTTTG
24446497 TTTAAAAATATATT
1 TTTAAAAATATATT
24446511 TTTAAAAATATATT
1 TTTAAAAATATATT
24446525 T
1 T
24446526 AAAATTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAAAAATATATT
Found at i:24446526 original size:12 final size:13
Alignment explanation
Indices: 24446497--24446529 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
24446487 TTTCATTTTG
24446497 TTTAAAAATATATT
1 TTTAAAAATATA-T
24446511 TTTAAAAATATA-
1 TTTAAAAATATAT
24446523 TTTAAAA
1 TTTAAAA
24446530 TTTAAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
14 12 0.63
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TTTAAAAATATAT
Found at i:24446533 original size:163 final size:163
Alignment explanation
Indices: 24446350--24446805 Score: 894
Period size: 163 Copynumber: 2.8 Consensus size: 163
24446340 AATAATTTCA
24446350 AAAATATATATTTAAAATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTAT
1 AAAA-ATATATTTAAAATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTAT
24446415 AAGACATAATTTTAAAAAATAATATTCAAAATTTAAAAAATAATTTAAAAATAATATTTAAAATT
65 AAGACATAATTTTAAAAAATAATATTCAAAATTTAAAAAATAATTTAAAAATAATATTTAAAATT
24446480 GAAATTATTTCATTTTGTTTAAAAATATATTTTT
130 GAAATTATTTCATTTTGTTTAAAAATATATTTTT
24446514 AAAAATATATTTAAAATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTATA
1 AAAAATATATTTAAAATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTATA
24446579 AGACATAATTTTAAAAAATAATATTCAAAATTTAAAAAATAATTTAAAAATAATATTTAAAATTG
66 AGACATAATTTTAAAAAATAATATTCAAAATTTAAAAAATAATTTAAAAATAATATTTAAAATTG
24446644 AAATTATTTCATTTTGTTTAAAAATATATTTTT
131 AAATTATTTCATTTTGTTTAAAAATATATTTTT
*
24446677 AAAAATATATTTAAAATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTGTA
1 AAAAATATATTTAAAATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTATA
24446742 AGACATAATTTTAAAAAATAATATTCAAAATTTAAAAAATAATTTAAAAATAATATTTAAAATT
66 AGACATAATTTTAAAAAATAATATTCAAAATTTAAAAAATAATTTAAAAATAATATTTAAAATT
24446806 TTAAAAAATA
Statistics
Matches: 291, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
163 287 0.99
164 4 0.01
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (163 bp):
AAAAATATATTTAAAATTTAAAATTTAGAAAAATTAATTTCAAATATATATTTTTAAAATTTATA
AGACATAATTTTAAAAAATAATATTCAAAATTTAAAAAATAATTTAAAAATAATATTTAAAATTG
AAATTATTTCATTTTGTTTAAAAATATATTTTT
Found at i:24446573 original size:36 final size:32
Alignment explanation
Indices: 24446529--24446815 Score: 108
Period size: 36 Copynumber: 8.6 Consensus size: 32
24446519 TATATTTAAA
24446529 ATTTAAAATTTAGAAAAATTAATTTCAAATATATAT
1 ATTTAAAATTTA-AAAAA-TAATTT-AAA-ATATAT
* * *
24446565 TTTTAAAATTTATAAGACATAATTTTAAAAAATAAT
1 ATTTAAAATTTA-AA-AAATAA-TTTAAAATAT-AT
*
24446601 ATTCAAAATTTAAAAAATAATTTAAAA-ATAAT
1 ATTTAAAATTTAAAAAATAATTTAAAATAT-AT
* ** * ** * *
24446633 ATTTAAAATTGAAATTATTTCATTT--TGTTTAA
1 ATTTAAAATTTAAA--AAATAATTTAAAATATAT
** * * *
24446665 AAATATATTTTTAAAAATATATTT---A-A-A-
1 ATTTAAAATTTAAAAAATA-ATTTAAAATATAT
24446692 ATTTAAAATTTAGAAAAATTAATTTCAAATATATAT
1 ATTTAAAATTTA-AAAAA-TAATTT-AAA-ATATAT
* * * *
24446728 TTTTAAAATTTGTAAGACATAATTTTAAAAAATAAT
1 ATTTAAAA-TT-TAAAAAATAA-TTTAAAATAT-AT
*
24446764 ATTCAAAATTTAAAAAATAATTTAAAA-ATAAT
1 ATTTAAAATTTAAAAAATAATTTAAAATAT-AT
24446796 ATTTAAAATTTTAAAAAATA
1 ATTTAAAA-TTTAAAAAATA
24446816 CATATTATAA
Statistics
Matches: 188, Mismatches: 41, Indels: 47
0.68 0.15 0.17
Matches are distributed among these distances:
27 7 0.04
28 10 0.05
29 2 0.01
30 2 0.01
31 4 0.02
32 38 0.20
33 27 0.14
34 20 0.11
35 11 0.06
36 52 0.28
37 13 0.07
38 2 0.01
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (32 bp):
ATTTAAAATTTAAAAAATAATTTAAAATATAT
Found at i:24446614 original size:21 final size:20
Alignment explanation
Indices: 24446588--24446629 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
24446578 AAGACATAAT
*
24446588 TTTAAAAAATAATATTCAAAA
1 TTTAAAAAATAAT-TTAAAAA
24446609 TTTAAAAAATAATTTAAAAA
1 TTTAAAAAATAATTTAAAAA
24446629 T
1 T
24446630 AATATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
TTTAAAAAATAATTTAAAAA
Found at i:24446679 original size:14 final size:14
Alignment explanation
Indices: 24446660--24446688 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24446650 TTTCATTTTG
24446660 TTTAAAAATATATT
1 TTTAAAAATATATT
24446674 TTTAAAAATATATT
1 TTTAAAAATATATT
24446688 T
1 T
24446689 AAAATTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAAAAATATATT
Found at i:24446689 original size:12 final size:13
Alignment explanation
Indices: 24446660--24446692 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
24446650 TTTCATTTTG
24446660 TTTAAAAATATATT
1 TTTAAAAATATA-T
24446674 TTTAAAAATATA-
1 TTTAAAAATATAT
24446686 TTTAAAA
1 TTTAAAA
24446693 TTTAAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
14 12 0.63
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TTTAAAAATATAT
Found at i:24446777 original size:21 final size:20
Alignment explanation
Indices: 24446751--24446792 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
24446741 AAGACATAAT
*
24446751 TTTAAAAAATAATATTCAAAA
1 TTTAAAAAATAAT-TTAAAAA
24446772 TTTAAAAAATAATTTAAAAA
1 TTTAAAAAATAATTTAAAAA
24446792 T
1 T
24446793 AATATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
TTTAAAAAATAATTTAAAAA
Found at i:24446903 original size:24 final size:23
Alignment explanation
Indices: 24446858--24446911 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
24446848 AACTTTTTTA
*
24446858 AAATTAATAACAAAAAATAAAAT
1 AAATAAATAACAAAAAATAAAAT
24446881 AAATAAATAAACAAAATAA-AAAAT
1 AAATAAAT-AACAAAA-AATAAAAT
*
24446905 ATATAAA
1 AAATAAA
24446912 ACTTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 7 0.26
24 18 0.67
25 2 0.07
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (23 bp):
AAATAAATAACAAAAAATAAAAT
Found at i:24446961 original size:20 final size:21
Alignment explanation
Indices: 24446915--24446962 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
24446905 ATATAAAACT
*
24446915 TAAAAAAAGAAAAAAATTTAA
1 TAAAAAAAGAAAAAAAGTTAA
* *
24446936 -AGAAAAAG-ACAAAAGTTAA
1 TAAAAAAAGAAAAAAAGTTAA
24446955 TAAAAAAA
1 TAAAAAAA
24446963 AAGTGAGTGG
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.15
Consensus pattern (21 bp):
TAAAAAAAGAAAAAAAGTTAA
Found at i:24448492 original size:99 final size:102
Alignment explanation
Indices: 24448383--24448584 Score: 295
Period size: 99 Copynumber: 2.0 Consensus size: 102
24448373 AGTTTTTAAA
* *
24448383 AAAAAATTTTTAATATCTGAAAATTCGAGTTTTTAAAA-AAAAA-TTTGGTGCTGGCCTGT-AAT
1 AAAAAATTTTTAATATCCGAAAATACGAG-TTTTAAAATAAAAATTTTGGTGCTGGCCTGTCAAT
*
24448445 GGCTGGCACCAAGTAC-AAAAAAAAATCAATTTTTTTT
65 GGCTGGCACCAAGTACAAAAAAAAAATCAAATTTTTTT
* * * *
24448482 AAAAATTTTTTATTGTCCGAAAATACGAGTTTTAAAATAAAAATTTTGGTGTTGGCCTGTCAATG
1 AAAAAATTTTTAATATCCGAAAATACGAGTTTTAAAATAAAAATTTTGGTGCTGGCCTGTCAATG
24448547 GCTGGCACCAAGTACAAAAAAAAAAATCAAATTTTTTT
66 GCTGGCACCAAGTAC-AAAAAAAAAATCAAATTTTTTT
24448585 GGTGCTGGCC
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
98 8 0.09
99 29 0.32
100 15 0.16
101 19 0.21
103 20 0.22
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.34
Consensus pattern (102 bp):
AAAAAATTTTTAATATCCGAAAATACGAGTTTTAAAATAAAAATTTTGGTGCTGGCCTGTCAATG
GCTGGCACCAAGTACAAAAAAAAAATCAAATTTTTTT
Found at i:24448594 original size:245 final size:243
Alignment explanation
Indices: 24448284--24448726 Score: 647
Period size: 245 Copynumber: 1.8 Consensus size: 243
24448274 TTAAAAAAAA
* *
24448284 TTGGTGTTGGCCTGTCAATGGTTGGCACCAAGTAAAAAAAAAATTCAAAATTTTTTGGTGCTGGC
1 TTGGTGTTGGCCTGTCAATGGCTGGCACCAAGTAAAAAAAAAAATCAAAATTTTTTGGTGCTGGC
* ** * *
24448349 CTGTCAATGGTCGGCACCAATACGAGTTTTTAAAAAAAAATTTTTAATATCTGAAAATTCGAGTT
66 CTGTCAATGGCCGGCACCAATACGAGTTTTTAAAAAAAAAAATTTAATATCTGAAAATACGAATT
* *
24448414 TTTAAAAAAAAATTTGGTGCTGGCCTGT-AATGGCTGGCACCAAGTACAAAAAAAAA-TCAATTT
131 TTT--AAAAAAATTTGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAATTCAAATT
24448477 TTTTTAAAAATTTTTTATTGTCCGAAAATACGAGTTTTAAAATAAAAATT
194 TTTTTAAAAATTTTTTATTGTCCGAAAATACGAGTTTTAAAATAAAAATT
*
24448527 TTGGTGTTGGCCTGTCAATGGCTGGCACCAAGTACAAAAAAAAAAATCAAATTTTTTTGGTGCTG
1 TTGGTGTTGGCCTGTCAATGGCTGGCACCAAGT--AAAAAAAAAAATCAAAATTTTTTGGTGCTG
* * * * *
24448592 GCCTGTCAATGGCCTGCACCAATACGAGTTTTTAAAAAAAAAAATTTGATGTTTGAAAGTACGAA
64 GCCTGTCAATGGCCGGCACCAATACGAGTTTTTAAAAAAAAAAATTTAATATCTGAAAATACGAA
**** * *
24448657 TTTTTAAATTTTTTTTGTGTTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAATTCAAATT
129 TTTTTAAAAAAATTTGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAATTCAAATT
24448722 TTTTT
194 TTTTT
24448727 GGTACTGGCC
Statistics
Matches: 175, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
243 49 0.28
244 27 0.15
245 99 0.57
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34
Consensus pattern (243 bp):
TTGGTGTTGGCCTGTCAATGGCTGGCACCAAGTAAAAAAAAAAATCAAAATTTTTTGGTGCTGGC
CTGTCAATGGCCGGCACCAATACGAGTTTTTAAAAAAAAAAATTTAATATCTGAAAATACGAATT
TTTAAAAAAATTTGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAATTCAAATTTT
TTTAAAAATTTTTTATTGTCCGAAAATACGAGTTTTAAAATAAAAATT
Found at i:24448765 original size:142 final size:142
Alignment explanation
Indices: 24448525--24448801 Score: 434
Period size: 142 Copynumber: 2.0 Consensus size: 142
24448515 AAAATAAAAA
* *
24448525 TTTTGGTGTTGGCCTGTCAATGGCTGGCACCAAGTACAAAAAAAAAAATCAAATTTTTTTGGTGC
1 TTTTGGTGTTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAAATCAAATTTTTTTGGTAC
*
24448590 TGGCCTGTCAATGGCCTGCACCAATACGAGTTTTTAAAAAAAAAAATTTGATGTTT-GAAAGTAC
66 TGGCCTGTCAATGGCCTGCACCAATACGAGTTTTTAAAAAAAAAAA-TTGAT-TTTCGAAAATAC
24448654 GAATTTTTAAATTT
129 GAATTTTTAAATTT
* *
24448668 TTTTTGTGTTGGCCTGTCAATGGCCGGCACCAAGTAC-AAAAAAAAATTCAAATTTTTTTGGTAC
1 TTTTGGTGTTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAAATCAAATTTTTTTGGTAC
* *
24448732 TGGCCTGTCAATGG-TTGGCACCAATACGAGTTTTTTAAAAAAAAAATTGATTTTCGAAAATACG
66 TGGCCTGTCAATGGCCT-GCACCAATACGAGTTTTTAAAAAAAAAAATTGATTTTCGAAAATACG
*
24448796 AGTTTT
130 AATTTT
24448802 AAAAAAAAAA
Statistics
Matches: 124, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
140 3 0.02
141 19 0.15
142 67 0.54
143 35 0.28
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (142 bp):
TTTTGGTGTTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAAATCAAATTTTTTTGGTAC
TGGCCTGTCAATGGCCTGCACCAATACGAGTTTTTAAAAAAAAAAATTGATTTTCGAAAATACGA
ATTTTTAAATTT
Found at i:24448857 original size:142 final size:142
Alignment explanation
Indices: 24448500--24448841 Score: 413
Period size: 142 Copynumber: 2.4 Consensus size: 142
24448490 TTTATTGTCC
* * * *
24448500 GAAAATACGAGTTTTAAAATAAAAATTTTGGTGTTGGCCTGTCAATGGCTGGCACCAAGTACAAA
1 GAAAATACGAATTTTAAAA-AAAAA-ATT-GTGATGGCCTGTCAATGGCCGGCACCAAGTAC-AA
* *
24448565 AAAAAAAATCAAATTTTTTTGGTGCTGGCCTGTCAATGGCCTGCACCAATACGAGTTTTTAAAAA
62 AAAAAAATTCAAATTTTTTTGGTACTGGCCTGTCAATGGCCTGCACCAATACGAGTTTTTAAAAA
24448630 AAAAAATTTGATGTTT
127 AAAAAATTTGATGTTT
* * ****** *
24448646 GAAAGTACGAATTTTTAAATTTTTTTTGTGTTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAA
1 GAAAATACGAATTTTAAAAAAAAAATTGTGATGGCCTGTCAATGGCCGGCACCAAGTACAAAAAA
* *
24448711 AAATTCAAATTTTTTTGGTACTGGCCTGTCAATGG-TTGGCACCAATACGAGTTTTTTAAAAAAA
66 AAATTCAAATTTTTTTGGTACTGGCCTGTCAATGGCCT-GCACCAATACGAGTTTTTAAAAAAAA
24448775 AAA-TTGAT-TTT
130 AAATTTGATGTTT
* **
24448786 CGAAAATACGAGTTTTAAAAAAAAAAATT-TGATGGCCTGTCAATGGGTGGCACCAA
1 -GAAAATACGAATTTT-AAAAAAAAAATTGTGATGGCCTGTCAATGGCCGGCACCAA
24448842 TATGAGTTTG
Statistics
Matches: 168, Mismatches: 25, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
140 3 0.02
141 43 0.26
142 72 0.43
143 31 0.18
144 3 0.02
146 16 0.10
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (142 bp):
GAAAATACGAATTTTAAAAAAAAAATTGTGATGGCCTGTCAATGGCCGGCACCAAGTACAAAAAA
AAATTCAAATTTTTTTGGTACTGGCCTGTCAATGGCCTGCACCAATACGAGTTTTTAAAAAAAAA
AATTTGATGTTT
Found at i:24451360 original size:5 final size:5
Alignment explanation
Indices: 24451352--24451448 Score: 50
Period size: 5 Copynumber: 18.0 Consensus size: 5
24451342 CTTTTTTTTT
* * * * * *
24451352 TTTCA TTTCT TTTCA TTTTCT TTTCA TTTTA TTTTAA TTTTA ATTCA TTTCAA
1 TTTCA TTTCA TTTCA -TTTCA TTTCA TTTCA -TTTCA TTTCA TTTCA TTTC-A
* * *
24451405 CTTCA TTTCA TTCTAA TTTCA TTTCCA TTCCCA TTTCCA TTTCA
1 TTTCA TTTCA TT-TCA TTTCA TTT-CA TT-TCA TTT-CA TTTCA
24451449 GATAAAGGGT
Statistics
Matches: 69, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
5 40 0.58
6 29 0.42
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.59
Consensus pattern (5 bp):
TTTCA
Found at i:24451371 original size:11 final size:11
Alignment explanation
Indices: 24451346--24451392 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
24451336 GTCAGTCTTT
*
24451346 TTTTTTTTTCA
1 TTTTCTTTTCA
24451357 -TTTCTTTTCA
1 TTTTCTTTTCA
24451367 TTTTCTTTTCA
1 TTTTCTTTTCA
* *
24451378 TTTTATTTTAA
1 TTTTCTTTTCA
24451389 TTTT
1 TTTT
24451393 AATTCATTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
10 9 0.28
11 23 0.72
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTCTTTTCA
Found at i:24454380 original size:81 final size:79
Alignment explanation
Indices: 24454250--24454481 Score: 274
Period size: 81 Copynumber: 2.9 Consensus size: 79
24454240 AAAATTTAAA
*
24454250 TTTTTTTTTGTACTTGGTGCCAGCCATTAACAGGCCAACACAATTTTTTTTTAAAAACTCGTATT
1 TTTTTTTTTGTACTTGGTGCCAGCCATTGACAGGCCAACACAATTTTTTTTTAAAAACTCGTATT
24454315 TTCAGAAATC-AATT
66 TT-AGAAATCAAATT
* *
24454329 TGATTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAACACTAA-ATTTTTTTAAAATACTCG
1 T--TTTTTTTTGTACTTGGTGCCAGCCATTGACAGGCCAACAC-AATTTTTTTTTAAAA-ACTCG
* *
24454393 TATTTTGGACATCAAAATT
62 TATTTTAGAAATC-AAATT
* * *
24454412 TTTTTATTTT-T-CTTGGTGCCTGCCATTGACAGGCCAGCACCAATTTTTTTTTTTAAAAACTCA
1 TTTTT-TTTTGTACTTGGTGCCAGCCATTGACAGGCCAACA-CAA--TTTTTTTTTAAAAACTCG
24454475 TATTTTA
62 TATTTTA
24454482 TATACCAGTA
Statistics
Matches: 132, Mismatches: 10, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
79 1 0.01
80 28 0.21
81 60 0.45
82 27 0.20
83 16 0.12
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.43
Consensus pattern (79 bp):
TTTTTTTTTGTACTTGGTGCCAGCCATTGACAGGCCAACACAATTTTTTTTTAAAAACTCGTATT
TTAGAAATCAAATT
Found at i:24473698 original size:33 final size:33
Alignment explanation
Indices: 24473656--24473719 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
24473646 TTTCTTCTTG
24473656 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
*
24473689 ACATTCCAGCTCCTGTCCAGCAACCAAACAC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACAC
24473720 TCCCACTCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.42, G:0.09, T:0.16
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
Found at i:24476163 original size:81 final size:81
Alignment explanation
Indices: 24476049--24476211 Score: 236
Period size: 81 Copynumber: 2.0 Consensus size: 81
24476039 TCATTACCTG
* * ** *
24476049 TCTTAAATACAATGTTCACACTTGACCGGTGTAGAGTTGTTTATAGTGAAATTCTACAGTTCATT
1 TCTTAAATACAATGCTCACACCTGACCAATGTAGAGTTGTTTATAGTGAAACTCTACAGTTCATT
24476114 TAGATGGTGCTCATCA
66 TAGATGGTGCTCATCA
* * * *
24476130 TCTTAAATATAGTGCTCACACCTGACCAATGTAGAGTTGTTTATAGTGATACTCTATAGTTCATT
1 TCTTAAATACAATGCTCACACCTGACCAATGTAGAGTTGTTTATAGTGAAACTCTACAGTTCATT
*
24476195 TAGATGGTGCTCGTCA
66 TAGATGGTGCTCATCA
24476211 T
1 T
24476212 TCTATCATGC
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (81 bp):
TCTTAAATACAATGCTCACACCTGACCAATGTAGAGTTGTTTATAGTGAAACTCTACAGTTCATT
TAGATGGTGCTCATCA
Found at i:24479106 original size:18 final size:20
Alignment explanation
Indices: 24479066--24479107 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
24479056 CGATTGAAAT
*
24479066 TTTAATTATTTTTGTTACTCA
1 TTTAATTATTTTTGTTA-GCA
24479087 TTTAATT-TTTTTGTT-GCA
1 TTTAATTATTTTTGTTAGCA
24479105 TTT
1 TTT
24479108 CCCTCACAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 5 0.25
20 8 0.40
21 7 0.35
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.67
Consensus pattern (20 bp):
TTTAATTATTTTTGTTAGCA
Found at i:24482327 original size:89 final size:89
Alignment explanation
Indices: 24482170--24482350 Score: 326
Period size: 89 Copynumber: 2.0 Consensus size: 89
24482160 CGCTTCAACT
*
24482170 AATAAAAGTGTATTTTAAAAATTCACATGTAAATGTACATAAAAAACAAATTAAAAATATATAAT
1 AATAAAAGTATATTTTAAAAATTCACATGTAAATGTACATAAAAAACAAATTAAAAATATATAAT
*
24482235 TATTTTTATTGATATTATACTTTA
66 TATTTTTATGGATATTATACTTTA
* *
24482259 AATAAAAGTATATTTTAAAAATTCACATGTAAATGTACATAAAAAACAAATTAAAAATATTTATT
1 AATAAAAGTATATTTTAAAAATTCACATGTAAATGTACATAAAAAACAAATTAAAAATATATAAT
24482324 TATTTTTATGGATATTATACTTTA
66 TATTTTTATGGATATTATACTTTA
24482348 AAT
1 AAT
24482351 TACACATATG
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 88 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (89 bp):
AATAAAAGTATATTTTAAAAATTCACATGTAAATGTACATAAAAAACAAATTAAAAATATATAAT
TATTTTTATGGATATTATACTTTA
Found at i:24486575 original size:47 final size:47
Alignment explanation
Indices: 24486466--24486576 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
24486456 CCGGGATAAG
*
24486466 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
24486513 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
24486560 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
24486577 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:24488870 original size:38 final size:36
Alignment explanation
Indices: 24488785--24488870 Score: 109
Period size: 36 Copynumber: 2.3 Consensus size: 36
24488775 TTGTAATATT
**
24488785 GTTGCTAGTATATTGTTGCTTATGTTGGTATACATG
1 GTTGCTAGTATATTGTTGCTTACATTGGTATACATG
* *
24488821 GCTGCTAGTATATTGTTGCTTAACATATGTTATACATG
1 GTTGCTAGTATATTGTTGCTT-ACAT-TGGTATACATG
*
24488859 GTTGCTGGTATA
1 GTTGCTAGTATA
24488871 AATGGCTAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 20 0.48
37 2 0.05
38 20 0.48
ACGTcount: A:0.22, C:0.10, G:0.23, T:0.44
Consensus pattern (36 bp):
GTTGCTAGTATATTGTTGCTTACATTGGTATACATG
Found at i:24490362 original size:40 final size:40
Alignment explanation
Indices: 24490307--24490404 Score: 144
Period size: 40 Copynumber: 2.5 Consensus size: 40
24490297 AAAAAATACC
*
24490307 CACTGTATGCATATTAAAAAATAGGT-AACACACCAACAAT
1 CACTGCATGCATATTAAAAAATA-GTCAACACACCAACAAT
* *
24490347 CACTGCATGTATATTAAAAAATAGTCAACATACCAACAAT
1 CACTGCATGCATATTAAAAAATAGTCAACACACCAACAAT
*
24490387 CAGTGCATGCATATTAAA
1 CACTGCATGCATATTAAA
24490405 GAACATTCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
39 2 0.04
40 50 0.96
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.24
Consensus pattern (40 bp):
CACTGCATGCATATTAAAAAATAGTCAACACACCAACAAT
Found at i:24491328 original size:18 final size:18
Alignment explanation
Indices: 24491305--24491344 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
24491295 TATCCATCTA
24491305 AACCTACTATCCTCCTAC
1 AACCTACTATCCTCCTAC
24491323 AACCTACTATCCTCCTAC
1 AACCTACTATCCTCCTAC
24491341 AACC
1 AACC
24491345 AGCCCTATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.45, G:0.00, T:0.25
Consensus pattern (18 bp):
AACCTACTATCCTCCTAC
Found at i:24492588 original size:6 final size:6
Alignment explanation
Indices: 24492579--24492613 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
24492569 CCCTAAATAG
* *
24492579 AAATCT AAATCA AAATCT AAATCT AAATTT AAATC
1 AAATCT AAATCT AAATCT AAATCT AAATCT AAATC
24492614 GAGATCGAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.31
Consensus pattern (6 bp):
AAATCT
Found at i:24492588 original size:12 final size:12
Alignment explanation
Indices: 24492579--24492643 Score: 67
Period size: 12 Copynumber: 5.4 Consensus size: 12
24492569 CCCTAAATAG
24492579 AAATCTAAATCA
1 AAATCTAAATCA
*
24492591 AAATCTAAATCT
1 AAATCTAAATCA
* *
24492603 AAATTTAAATCG
1 AAATCTAAATCA
* * *
24492615 AGATCGAAATTA
1 AAATCTAAATCA
*
24492627 AAATCAAAATCA
1 AAATCTAAATCA
24492639 AAATC
1 AAATC
24492644 AGAATCAGAA
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.26
Consensus pattern (12 bp):
AAATCTAAATCA
Found at i:24492600 original size:18 final size:18
Alignment explanation
Indices: 24492579--24492655 Score: 64
Period size: 18 Copynumber: 4.3 Consensus size: 18
24492569 CCCTAAATAG
*
24492579 AAATCTAAATCAAAATCT
1 AAATCTAAATCAAAATCA
** *
24492597 AAATCTAAATTTAAATCG
1 AAATCTAAATCAAAATCA
* * *
24492615 AGATCGAAATTAAAATCA
1 AAATCTAAATCAAAATCA
* *
24492633 AAATCAAAATCAGAATCA
1 AAATCTAAATCAAAATCA
*
24492651 GAATC
1 AAATC
24492656 AGTGAGTGTT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.55, C:0.14, G:0.06, T:0.25
Consensus pattern (18 bp):
AAATCTAAATCAAAATCA
Found at i:24492644 original size:12 final size:12
Alignment explanation
Indices: 24492579--24492656 Score: 57
Period size: 12 Copynumber: 6.5 Consensus size: 12
24492569 CCCTAAATAG
*
24492579 AAATCTAAATCA
1 AAATCAAAATCA
* *
24492591 AAATCTAAATCT
1 AAATCAAAATCA
** *
24492603 AAATTTAAATCG
1 AAATCAAAATCA
* * *
24492615 AGATCGAAATTA
1 AAATCAAAATCA
24492627 AAATCAAAATCA
1 AAATCAAAATCA
*
24492639 AAATCAGAATCA
1 AAATCAAAATCA
*
24492651 GAATCA
1 AAATCA
24492657 GTGAGTGTTT
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 53 1.00
ACGTcount: A:0.55, C:0.14, G:0.06, T:0.24
Consensus pattern (12 bp):
AAATCAAAATCA
Found at i:24492683 original size:12 final size:12
Alignment explanation
Indices: 24492666--24492713 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
24492656 AGTGAGTGTT
*
24492666 TCAAAATTGAAA
1 TCAAAATCGAAA
24492678 TCAAAATCGAAA
1 TCAAAATCGAAA
* *
24492690 TCGAAATCAAAA
1 TCAAAATCGAAA
*
24492702 TTAAAATCGAAA
1 TCAAAATCGAAA
24492714 AAACCCTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.21
Consensus pattern (12 bp):
TCAAAATCGAAA
Found at i:24492695 original size:18 final size:18
Alignment explanation
Indices: 24492666--24492713 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
24492656 AGTGAGTGTT
*
24492666 TCAAAATTGAAATCAAAA
1 TCAAAATCGAAATCAAAA
*
24492684 TCGAAATCGAAATCAAAA
1 TCAAAATCGAAATCAAAA
*
24492702 TTAAAATCGAAA
1 TCAAAATCGAAA
24492714 AAACCCTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.21
Consensus pattern (18 bp):
TCAAAATCGAAATCAAAA
Found at i:24493714 original size:23 final size:22
Alignment explanation
Indices: 24493688--24493730 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
24493678 AAAATTATGA
*
24493688 ATAAAATAATAGTAAAATAATAT
1 ATAAAATAAAAGT-AAATAATAT
*
24493711 ATAACATAAAAGTAAATAAT
1 ATAAAATAAAAGTAAATAAT
24493731 TGATGGTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (22 bp):
ATAAAATAAAAGTAAATAATAT
Found at i:24496151 original size:2 final size:2
Alignment explanation
Indices: 24496144--24496172 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
24496134 TCTTTAATTT
24496144 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24496173 TTTGTTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24500793 original size:3 final size:3
Alignment explanation
Indices: 24500787--24500821 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
24500777 AGAAGAAGAA
*
24500787 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAA GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
24500822 CCTGGCCAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.37, C:0.00, G:0.34, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:24502005 original size:30 final size:30
Alignment explanation
Indices: 24501969--24502037 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
24501959 CTTTTTTTTA
* *
24501969 AAAAAAAAAAACTTATTAGTTTACTATCTT
1 AAAAAAAAAAACTTAATAGTCTACTATCTT
*
24501999 AAAAAAAAAAACTTAATAGTCTGCTATCTT
1 AAAAAAAAAAACTTAATAGTCTACTATCTT
*
24502029 AAATAAAAA
1 AAAAAAAAA
24502038 CTTTCGAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.55, C:0.10, G:0.04, T:0.30
Consensus pattern (30 bp):
AAAAAAAAAAACTTAATAGTCTACTATCTT
Found at i:24503103 original size:15 final size:16
Alignment explanation
Indices: 24503079--24503119 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
24503069 AATTGAGAAT
*
24503079 TTATTA-AAAATT-CA
1 TTATTATAAAATTAAA
*
24503093 TTTTTATAAAATTAAA
1 TTATTATAAAATTAAA
24503109 TTATTATAAAA
1 TTATTATAAAA
24503120 GTTTTTTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
14 5 0.23
15 6 0.27
16 11 0.50
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TTATTATAAAATTAAA
Found at i:24504794 original size:27 final size:27
Alignment explanation
Indices: 24504764--24504815 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
24504754 CACAGTTTGT
*
24504764 GTGAGCAGGCACATTTTCACAACTCAC
1 GTGAGCAGACACATTTTCACAACTCAC
* *
24504791 GTGAGCAGACCCATTTTTACAACTC
1 GTGAGCAGACACATTTTCACAACTC
24504816 GTATGAGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (27 bp):
GTGAGCAGACACATTTTCACAACTCAC
Found at i:24504822 original size:27 final size:27
Alignment explanation
Indices: 24504765--24504824 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
24504755 ACAGTTTGTG
* *
24504765 TGAGCAGGCACATTTTCACAACTCACG
1 TGAGCAGACACATTTTCACAACTCACA
* * **
24504792 TGAGCAGACCCATTTTTACAACTCGTA
1 TGAGCAGACACATTTTCACAACTCACA
24504819 TGAGCA
1 TGAGCA
24504825 TTGTTATCCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (27 bp):
TGAGCAGACACATTTTCACAACTCACA
Found at i:24506467 original size:110 final size:108
Alignment explanation
Indices: 24506065--24506469 Score: 439
Period size: 111 Copynumber: 3.7 Consensus size: 108
24506055 AATAATTATT
* * * * *
24506065 TATATAA--ATTAAATTAAAATAATTAAACTCGTAAATATAC--GTG--CGTGAATTAAGAAACT
1 TATATAATTATTAAATTAAAATAAATAAACACGTCAATATACATGCGCACGTGATTTAAGAAA-T
*
24506124 AATGAAAATTTTAAAATAATTATTTACTTTAATTGAGTAAAATAAA
65 AAT--AAATTTTAAAATAATTATTTACATTAATTGAGTAAAATAAA
* *
24506170 TATATAATTATTAAATTAAAACAAATAGACACGAT-AATATA-AGTGCGCACGTGATTTAAGAAA
1 TATATAATTATTAAATTAAAATAAATAAACACG-TCAATATACA-TGCGCACGTGATTTAAGAAA
*
24506233 TTAATAACTTTTAAAAAATAATTATTTACATTAATTGAGTAAAATAAA
64 -TAATAAATTTT--AAAATAATTATTTACATTAATTGAGTAAAATAAA
* * * * * *
24506281 TATATAGTTATTAAATTAAAATAAATAAAAACATCAATATACGTGCGCACGTTATTTGAGAAACT
1 TATATAATTATTAAATTAAAATAAATAAACACGTCAATATACATGCGCACGTGATTTAAGAAA-T
* * * *
24506346 AATAATTTTTTAAAATAGTTATTTAAATTAATTAAGTAAAATAAA
65 AATAA-ATTTTAAAATAATTATTTACATTAATTGAGTAAAATAAA
* ** *
24506391 TATATAATTAATTAAATTAAAATAAATAAACGCGTCAATGGACATGGGCACGTGATTTAAGAAAT
1 TATATAATT-ATTAAATTAAAATAAATAAACACGTCAATATACATGCGCACGTGATTTAAGAAAT
24506456 AAATAAATTTTAAA
65 -AATAAATTTTAAA
24506470 CATTTAAAAA
Statistics
Matches: 252, Mismatches: 33, Indels: 25
0.81 0.11 0.08
Matches are distributed among these distances:
105 7 0.03
107 26 0.10
108 1 0.00
109 8 0.03
110 48 0.19
111 158 0.63
112 4 0.02
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (108 bp):
TATATAATTATTAAATTAAAATAAATAAACACGTCAATATACATGCGCACGTGATTTAAGAAATA
ATAAATTTTAAAATAATTATTTACATTAATTGAGTAAAATAAA
Found at i:24507221 original size:29 final size:30
Alignment explanation
Indices: 24507168--24507226 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
24507158 TAATTGGATT
24507168 AAATCAAAATTTTATGTATAAAATTACACA
1 AAATCAAAATTTTATGTATAAAATTACACA
* *
24507198 AAATCAAAGTTTT-TGTATACAATTACACA
1 AAATCAAAATTTTATGTATAAAATTACACA
24507227 TTAAACTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.34
Consensus pattern (30 bp):
AAATCAAAATTTTATGTATAAAATTACACA
Found at i:24508769 original size:30 final size:29
Alignment explanation
Indices: 24508727--24508800 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 29
24508717 ATTTAAAATT
* *
24508727 TTTATAAA-AATAAAATTGTAATTTAA-CC
1 TTTAAAAATAATAAAAAT-TAATTTAATCC
24508755 TCTTAAAAATAATAAAAAATTAATTTAATCC
1 T-TTAAAAATAAT-AAAAATTAATTTAATCC
*
24508786 TTTAAAAATTATAAA
1 TTTAAAAATAATAAA
24508801 GACATAGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
28 1 0.03
29 9 0.23
30 21 0.54
31 8 0.21
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.38
Consensus pattern (29 bp):
TTTAAAAATAATAAAAATTAATTTAATCC
Found at i:24512852 original size:12 final size:12
Alignment explanation
Indices: 24512835--24512861 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
24512825 CAATATTATT
24512835 ATTGTTAATTGA
1 ATTGTTAATTGA
24512847 ATTGTTAATTGA
1 ATTGTTAATTGA
24512859 ATT
1 ATT
24512862 AAAACTCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (12 bp):
ATTGTTAATTGA
Found at i:24515057 original size:2 final size:2
Alignment explanation
Indices: 24515050--24515076 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24515040 GAGACTAGTC
24515050 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
24515077 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24516339 original size:64 final size:64
Alignment explanation
Indices: 24516160--24516342 Score: 203
Period size: 64 Copynumber: 2.8 Consensus size: 64
24516150 ATATAGTTCG
* * * *
24516160 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATCCCGT
24516222 A
64 A
* * * *
24516223 GCTCT-TTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCG
24516287 TA
63 TA
* *
24516289 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT
24516343 CATAATGTCT
Statistics
Matches: 99, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
61 1 0.01
62 12 0.12
63 5 0.05
64 28 0.28
65 23 0.23
66 14 0.14
67 16 0.16
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:24517110 original size:30 final size:30
Alignment explanation
Indices: 24517076--24517136 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
24517066 TCCTTAACTC
24517076 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
24517106 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
24517136 A
1 A
24517137 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:24525677 original size:22 final size:24
Alignment explanation
Indices: 24525632--24525679 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
24525622 TGGCCCTATG
*
24525632 CTTTATCCTTGTTTTTTCATTAAT
1 CTTTATCCTTGTTTTTTCACTAAT
*
24525656 CTTTGTCCTTG-TTTTTC-CTAAT
1 CTTTATCCTTGTTTTTTCACTAAT
24525678 CT
1 CT
24525680 CTCCTTTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.27
23 6 0.27
24 10 0.45
ACGTcount: A:0.12, C:0.21, G:0.06, T:0.60
Consensus pattern (24 bp):
CTTTATCCTTGTTTTTTCACTAAT
Found at i:24526225 original size:6 final size:6
Alignment explanation
Indices: 24526214--24526242 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
24526204 AATAACTAAT
24526214 GTATTA GTATTA GTATTA GTATTA GTATT
1 GTATTA GTATTA GTATTA GTATTA GTATT
24526243 TTAGTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (6 bp):
GTATTA
Found at i:24526257 original size:6 final size:6
Alignment explanation
Indices: 24526248--24526278 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
24526238 GTATTTTAGT
24526248 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG A
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG A
24526279 CAACAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.65
Consensus pattern (6 bp):
ATTTTG
Found at i:24530721 original size:76 final size:76
Alignment explanation
Indices: 24530619--24530770 Score: 286
Period size: 76 Copynumber: 2.0 Consensus size: 76
24530609 AACCCTCTGT
*
24530619 ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTTGTAATAAGTAGAAGGCTTAAAAT
1 ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTAGTAATAAGTAGAAGGCTTAAAAT
24530684 TGTTTATTATC
66 TGTTTATTATC
*
24530695 ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTAGTAATAAGTAGAAGGCTTAGAAT
1 ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTAGTAATAAGTAGAAGGCTTAAAAT
24530760 TGTTTATTATC
66 TGTTTATTATC
24530771 TCCCTAAAAG
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.32
Consensus pattern (76 bp):
ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTAGTAATAAGTAGAAGGCTTAAAAT
TGTTTATTATC
Found at i:24541339 original size:30 final size:30
Alignment explanation
Indices: 24541293--24541385 Score: 141
Period size: 30 Copynumber: 3.1 Consensus size: 30
24541283 ACTTAACAAG
* *
24541293 CAAATGCCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
* * *
24541323 TAAATACCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
24541353 CAAATGCCTTTAAAATAATAAAAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
24541383 CAA
1 CAA
24541386 TAAAATAAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:24549093 original size:12 final size:12
Alignment explanation
Indices: 24549072--24549113 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
24549062 CTCACCAACA
24549072 ATTT-TTTTTAT
1 ATTTATTTTTAT
* *
24549083 ATATATTTTTAA
1 ATTTATTTTTAT
*
24549095 ATTTATTATTAT
1 ATTTATTTTTAT
24549107 ATTTATT
1 ATTTATT
24549114 GTAAATTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 3 0.12
12 22 0.88
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
ATTTATTTTTAT
Found at i:24549107 original size:24 final size:23
Alignment explanation
Indices: 24549071--24549123 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
24549061 TCTCACCAAC
* *
24549071 AATTT-TTTTTATATATATTTTTA
1 AATTTATTATTATATATA-TTGTA
*
24549094 AATTTATTATTATATTTATTGTA
1 AATTTATTATTATATATATTGTA
24549117 AATTTAT
1 AATTTAT
24549124 CTGAGTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 16 0.62
24 10 0.38
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
AATTTATTATTATATATATTGTA
Found at i:24553707 original size:21 final size:21
Alignment explanation
Indices: 24553682--24553729 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
24553672 ATAAGCCAAT
*
24553682 CAGAAGCTCATAAGAGCTAAA
1 CAGAAACTCATAAGAGCTAAA
* *
24553703 CAGAAACTCATAAGAGTTTAA
1 CAGAAACTCATAAGAGCTAAA
24553724 CAGAAA
1 CAGAAA
24553730 GTAAAACATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (21 bp):
CAGAAACTCATAAGAGCTAAA
Found at i:24556897 original size:20 final size:20
Alignment explanation
Indices: 24556869--24556969 Score: 52
Period size: 21 Copynumber: 5.2 Consensus size: 20
24556859 GAATTTTATA
24556869 TTTCTTTACATTTTTTATAAT
1 TTTC-TTACATTTTTTATAAT
* * *
24556890 TTTCTTACGACTTTATAAAAT
1 TTTCTTAC-ATTTTTTATAAT
* *
24556911 TTT-ATAAATTTTTCTAT-A-
1 TTTCTTACATTTTT-TATAAT
* *
24556929 TTTC-TATATATTTTAT-AT
1 TTTCTTACATTTTTTATAAT
*
24556947 TTTTTTACGA-TTTTTATAAT
1 TTTCTTAC-ATTTTTTATAAT
24556967 TTT
1 TTT
24556970 TTCTAATTTT
Statistics
Matches: 60, Mismatches: 13, Indels: 15
0.68 0.15 0.17
Matches are distributed among these distances:
17 4 0.07
18 13 0.22
19 13 0.22
20 14 0.23
21 16 0.27
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTCTTACATTTTTTATAAT
Found at i:24556961 original size:19 final size:19
Alignment explanation
Indices: 24556838--24556971 Score: 58
Period size: 20 Copynumber: 6.8 Consensus size: 19
24556828 TGATACGATA
*
24556838 ATTTTTATACCTTTTTTTAATG
1 ATTTTTATA--TTTTTTT-ACG
* *
24556860 AATTTTATATTTCTTTAC-
1 ATTTTTATATTTTTTTACG
*
24556878 ATTTTTTATAATTTTCTTACG
1 A-TTTTTAT-ATTTTTTTACG
* * * * *
24556899 ACTTTATAAAATTTTATA-A
1 A-TTTTTATATTTTTTTACG
* * * *
24556918 ATTTTTCTATATTTCTA-T
1 ATTTTTATATTTTTTTACG
24556936 ATATTTTATATTTTTTTACG
1 AT-TTTTATATTTTTTTACG
24556956 ATTTTTATAATTTTTT
1 ATTTTTAT-ATTTTTT
24556972 CTAATTTTTA
Statistics
Matches: 82, Mismatches: 24, Indels: 14
0.68 0.20 0.12
Matches are distributed among these distances:
18 13 0.16
19 26 0.32
20 29 0.35
21 6 0.07
22 8 0.10
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTTTTATATTTTTTTACG
Found at i:24556971 original size:29 final size:29
Alignment explanation
Indices: 24556878--24556980 Score: 75
Period size: 27 Copynumber: 3.6 Consensus size: 29
24556868 ATTTCTTTAC
* *
24556878 ATTTTTTATAATTTTCTTACGACTTTATAAA
1 ATTTTTTAT-ATTTTTTTACGA-TTTATATA
* * * * *
24556909 ATTTTATAAATTTTTCTA-TATTTCTAT-
1 ATTTTTTATATTTTTTTACGATTTATATA
* *
24556936 ATATTTTATATTTTTTTACGATTTTTATA
1 ATTTTTTATATTTTTTTACGATTTATATA
* *
24556965 ATTTTTTCTAATTTTT
1 ATTTTTTATATTTTTT
24556981 AATAAAATTT
Statistics
Matches: 54, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
27 14 0.26
28 12 0.22
29 14 0.26
30 7 0.13
31 7 0.13
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (29 bp):
ATTTTTTATATTTTTTTACGATTTATATA
Found at i:24556978 original size:19 final size:19
Alignment explanation
Indices: 24556929--24556981 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
24556919 TTTTTCTATA
*
24556929 TTTCTATATATTTTATATTT
1 TTTCTACAT-TTTTATATTT
24556949 TTT-TACGATTTTTATAATTT
1 TTTCTAC-ATTTTTAT-ATTT
24556969 TTTCTA-ATTTTTA
1 TTTCTACATTTTTA
24556982 ATAAAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 15 0.52
20 12 0.41
21 2 0.07
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTCTACATTTTTATATTT
Found at i:24556993 original size:27 final size:28
Alignment explanation
Indices: 24556963--24557020 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
24556953 ACGATTTTTA
*
24556963 TAATTTTTTCTA-ATTTTTAATAAAATT
1 TAATTATTTCTATATTTTTAATAAAATT
*
24556990 TAA-TATTTCTATATTTTTATTAAAATT
1 TAATTATTTCTATATTTTTAATAAAATT
24557017 TAAT
1 TAAT
24557021 ATAACTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (28 bp):
TAATTATTTCTATATTTTTAATAAAATT
Found at i:24557021 original size:27 final size:26
Alignment explanation
Indices: 24556969--24557022 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
24556959 TTTATAATTT
24556969 TTTCTAATTTTTAATAAAATTTAATA
1 TTTCTAATTTTTAATAAAATTTAATA
*
24556995 TTTCTATATTTTTATTAAAATTTAATA
1 TTTCTA-ATTTTTAATAAAATTTAATA
24557022 T
1 T
24557023 AACTTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (26 bp):
TTTCTAATTTTTAATAAAATTTAATA
Found at i:24558686 original size:17 final size:17
Alignment explanation
Indices: 24558661--24558693 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24558651 CCGCTGAGTC
*
24558661 TCTATCAATGGACATTA
1 TCTACCAATGGACATTA
24558678 TCTACCAATGGACATT
1 TCTACCAATGGACATT
24558694 CAATGGGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (17 bp):
TCTACCAATGGACATTA
Found at i:24561662 original size:6 final size:6
Alignment explanation
Indices: 24561651--24561693 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
24561641 TGGAGGGATA
24561651 TGTGGC TGTGGC TGTGGC TGTGGC T-T-GC TGTGGC TGTGGC TGT
1 TGTGGC TGTGGC TGTGGC TGTGGC TGTGGC TGTGGC TGTGGC TGT
24561694 TCACAACTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 3 0.09
5 2 0.06
6 30 0.86
ACGTcount: A:0.00, C:0.16, G:0.47, T:0.37
Consensus pattern (6 bp):
TGTGGC
Found at i:24561682 original size:16 final size:18
Alignment explanation
Indices: 24561651--24561693 Score: 72
Period size: 16 Copynumber: 2.5 Consensus size: 18
24561641 TGGAGGGATA
24561651 TGTGGCTGTGGCTGTGGC
1 TGTGGCTGTGGCTGTGGC
24561669 TGTGGCT-T-GCTGTGGC
1 TGTGGCTGTGGCTGTGGC
24561685 TGTGGCTGT
1 TGTGGCTGT
24561694 TCACAACTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.62
17 2 0.08
18 7 0.29
ACGTcount: A:0.00, C:0.16, G:0.47, T:0.37
Consensus pattern (18 bp):
TGTGGCTGTGGCTGTGGC
Found at i:24562098 original size:14 final size:14
Alignment explanation
Indices: 24562071--24562115 Score: 58
Period size: 13 Copynumber: 3.3 Consensus size: 14
24562061 AAAATAAAAT
24562071 ATTAAAATAATTAGA
1 ATTAAAA-AATTAGA
24562086 ATTAAAAAATTAG-
1 ATTAAAAAATTAGA
*
24562099 ATTAAGAAATTA-A
1 ATTAAAAAATTAGA
24562112 ATTA
1 ATTA
24562116 GGTGCCCAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 15 0.54
14 6 0.21
15 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
ATTAAAAAATTAGA
Found at i:24568955 original size:37 final size:37
Alignment explanation
Indices: 24568913--24568985 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
24568903 AAATTTATAC
*
24568913 TTAAACTATCCTTCCGTTATCTGGTTTAACTTTTTTT
1 TTAAACTATCCTTCCGTTATCTAGTTTAACTTTTTTT
24568950 TTAAACTATCCTTCCGTTATCTAGTTTAACTTTTTT
1 TTAAACTATCCTTCCGTTATCTAGTTTAACTTTTTT
24568986 GTAACAGTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.21, C:0.19, G:0.07, T:0.53
Consensus pattern (37 bp):
TTAAACTATCCTTCCGTTATCTAGTTTAACTTTTTTT
Found at i:24569293 original size:7 final size:7
Alignment explanation
Indices: 24569283--24569329 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
24569273 AAAGAGTTTA
24569283 AAAATAT
1 AAAATAT
24569290 AAAATAT
1 AAAATAT
24569297 AAAATAT
1 AAAATAT
*
24569304 AAAATTCT
1 AAAA-TAT
*
24569312 AAAAAAT
1 AAAATAT
24569319 ATAAATAT
1 A-AAATAT
24569327 AAA
1 AAA
24569330 TTTTAAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
7 22 0.65
8 12 0.35
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATAT
Found at i:24569302 original size:14 final size:14
Alignment explanation
Indices: 24569283--24569329 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
24569273 AAAGAGTTTA
24569283 AAAATATAAAATAT
1 AAAATATAAAATAT
*
24569297 AAAATATAAAATTCT
1 AAAATATAAAA-TAT
*
24569312 AAAAAATATAAATAT
1 AAAATATA-AAATAT
24569327 AAA
1 AAA
24569330 TTTTAAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 11 0.39
15 14 0.50
16 3 0.11
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAATATAAAATAT
Found at i:24569314 original size:22 final size:20
Alignment explanation
Indices: 24569289--24569345 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
24569279 TTTAAAAATA
24569289 TAAAATATAAAATATAAAATTC
1 TAAAA-ATAAAATAT-AAATTC
*
24569311 TAAAAAATATAAATATAAATTT
1 T-AAAAATA-AAATATAAATTC
24569333 TAAAGAATAAAAT
1 TAAA-AATAAAAT
24569346 TATTATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 7 0.23
22 14 0.45
23 10 0.32
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
TAAAAATAAAATATAAATTC
Found at i:24569429 original size:29 final size:29
Alignment explanation
Indices: 24569384--24569445 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
24569374 ATTTTATTTT
24569384 TTAAAAAAGAAATTCTAAAT-TCTAAAAA
1 TTAAAAAAGAAATTCTAAATATCTAAAAA
* * *
24569412 TTAAAAAATATATATCTAAATATCTAAAAG
1 TTAAAAAAGAAAT-TCTAAATATCTAAAAA
24569442 TTAA
1 TTAA
24569446 TGACAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 11 0.38
29 7 0.24
30 11 0.38
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (29 bp):
TTAAAAAAGAAATTCTAAATATCTAAAAA
Found at i:24570893 original size:3 final size:3
Alignment explanation
Indices: 24570881--24570928 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
24570871 ACTAATCTTC
24570881 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24570928 T
1 T
24570929 TGCTTTTTAG
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:24571688 original size:2 final size:2
Alignment explanation
Indices: 24571681--24571724 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
24571671 GTTATTTTCC
24571681 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24571723 AT
1 AT
24571725 TACTAAAATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24572514 original size:2 final size:2
Alignment explanation
Indices: 24572507--24572536 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
24572497 CAATTAAAAC
24572507 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24572537 TTGATATTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24574979 original size:40 final size:39
Alignment explanation
Indices: 24574930--24575070 Score: 151
Period size: 40 Copynumber: 3.6 Consensus size: 39
24574920 TAGTAATTAT
24574930 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGAT-AA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTTG-TGAA
* * *
24574970 ATCCAGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGAT
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTGTGAA
* * *
24575010 ATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGCGAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTTGTGAA
* * *
24575049 ACCCGGGTTAAGTCCCGAAGGC
1 ATCCGGGCTAAGACCCGAAGGC
24575071 CTTTGTGTGG
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
39 33 0.38
40 53 0.60
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTTGTGAA
Found at i:24575067 original size:79 final size:80
Alignment explanation
Indices: 24574928--24575077 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 80
24574918 GCTAGTAATT
* *
24574928 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGATAAATCCAGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGAGAAACCCAGGCTAAGACCCGAAGGCA
24574993 TTTGTGCAAATTGTG
66 TTTGTGCAAATTGTG
* * * * * *
24575008 ATATCCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTGCGATACCCGGGTTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGAGAAACCCAGGCTAAGACCCGAAGGC
*
24575071 CTTTGTG
65 ATTTGTG
24575078 TGGGCTACCA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
79 43 0.72
80 17 0.28
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGAGAAACCCAGGCTAAGACCCGAAGGCA
TTTGTGCAAATTGTG
Done.