Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 73 of 335
Found at i:24713019 original size:15 final size:15
Alignment explanation
Indices: 24713001--24713067 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
24712991 ATATTATTCA
24713001 TGTTATATATATTAT
1 TGTTATATATATTAT
*
24713016 TGTTATCA-CTATTAT
1 TGTTAT-ATATATTAT
*
24713031 TTTTATAT-TATTAT
1 TGTTATATATATTAT
*
24713045 TATTATATTATATT-T
1 TGTTATA-TATATTAT
*
24713060 AGTTATAT
1 TGTTATAT
24713068 TTTTTAAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 14 0.33
15 24 0.56
16 5 0.12
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.61
Consensus pattern (15 bp):
TGTTATATATATTAT
Found at i:24713065 original size:29 final size:30
Alignment explanation
Indices: 24712992--24713068 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 30
24712982 TAGCTTTAAA
*
24712992 TATTATTCATGTTATATATATTATTGTTATCAC
1 TATTATT--TGTTATAT-TATTATTATTATCAC
*
24713025 TATTATTT-TTATATTATTATTATTAT-AT
1 TATTATTTGTTATATTATTATTATTATCAC
24713053 TA-TATTTAGTTATATT
1 TATTATTT-GTTATATT
24713069 TTTTAAATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
27 5 0.12
28 3 0.08
29 18 0.45
30 6 0.15
31 1 0.03
33 7 0.17
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (30 bp):
TATTATTTGTTATATTATTATTATTATCAC
Found at i:24713129 original size:18 final size:18
Alignment explanation
Indices: 24713101--24713144 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24713091 TATTATATGC
*
24713101 ATATATATATTTTTTATTA
1 ATAT-TATATTTATTATTA
*
24713120 TTATTATATTTATTATTA
1 ATATTATATTTATTATTA
24713138 ATATTAT
1 ATATTAT
24713145 TAGTACTAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
ATATTATATTTATTATTA
Found at i:24713270 original size:22 final size:23
Alignment explanation
Indices: 24713227--24713457 Score: 167
Period size: 23 Copynumber: 9.7 Consensus size: 23
24713217 AGTTTTTTTC
24713227 ATATTAT-TATCAT-TTTTAATAT
1 ATATTATGTAT-ATATTTTAATAT
*
24713249 ATA-TATTGTATATGTTTT-ATAT
1 ATATTA-TGTATATATTTTAATAT
24713271 ATATTATGTATATATTTTTAATAT
1 ATATTATGTATATA-TTTTAATAT
*
24713295 -TATTA-GTTATATATTTT-TTAT
1 ATATTATG-TATATATTTTAATAT
*
24713316 ACTATTTCATGTATATATTTTTATAT
1 A-TA-TT-ATGTATATATTTTAATAT
24713342 -TAACTTATGTATATATTTTTTAATAACT
1 AT-A-TTATGTATATA--TTTTAAT-A-T
* * *
24713370 ATATTTTGTATGTATTTTTAACACT
1 ATATTATGTATATA-TTTTAATA-T
*
24713395 ATATTATGTACATACTTTTAATAT
1 ATATTATGTATATA-TTTTAATAT
*
24713419 -TATTATGTATTTATCTTTAATAT
1 ATATTATGTATATAT-TTTAATAT
24713442 ATA-TATGTATATATTT
1 ATATTATGTATATATTT
24713458 ATGTAGTATT
Statistics
Matches: 172, Mismatches: 16, Indels: 42
0.75 0.07 0.18
Matches are distributed among these distances:
21 5 0.03
22 28 0.16
23 55 0.32
24 19 0.11
25 35 0.20
26 17 0.10
27 10 0.06
28 2 0.01
29 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (23 bp):
ATATTATGTATATATTTTAATAT
Found at i:24713271 original size:11 final size:10
Alignment explanation
Indices: 24713246--24713341 Score: 57
Period size: 11 Copynumber: 8.5 Consensus size: 10
24713236 TCATTTTTAA
*
24713246 TATATATATTG
1 TATATAT-TTT
*
24713257 TATATGTTTT
1 TATATATTTT
*
24713267 ATATATATTATG
1 -TATATATT-TT
24713279 TATATATTTT
1 TATATATTTT
*
24713289 TAATATTATTAGT
1 T-ATA-TATT-TT
24713302 TATATATTTTT
1 TATATA-TTTT
24713313 TATACTATTTCAT
1 TATA-TATTT--T
24713326 GTATATATTTT
1 -TATATATTTT
24713337 TATAT
1 TATAT
24713342 TAACTTATGT
Statistics
Matches: 68, Mismatches: 7, Indels: 21
0.71 0.07 0.22
Matches are distributed among these distances:
10 9 0.13
11 35 0.51
12 12 0.18
13 8 0.12
14 4 0.06
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.60
Consensus pattern (10 bp):
TATATATTTT
Found at i:24713615 original size:25 final size:25
Alignment explanation
Indices: 24713581--24713628 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
24713571 TTTTAAATAA
**
24713581 CTATATTATGTATGTATTTTTAACG
1 CTATATTATGTACATATTTTTAACG
24713606 CTATATTATGTACATATTTTTAA
1 CTATATTATGTACATATTTTTAA
24713629 TATTATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.52
Consensus pattern (25 bp):
CTATATTATGTACATATTTTTAACG
Found at i:24713646 original size:20 final size:20
Alignment explanation
Indices: 24713608--24713646 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24713598 TTTTAACGCT
*
24713608 ATATTATGTACATATTTTTA
1 ATATTATGTACATACTTTTA
**
24713628 ATATTATGTTTATACTTTT
1 ATATTATGTACATACTTTT
24713647 TATTCTTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
ATATTATGTACATACTTTTA
Found at i:24713668 original size:27 final size:26
Alignment explanation
Indices: 24713620--24713672 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
24713610 ATTATGTACA
* * *
24713620 TATTTTTAATATTATGTTTATACTTTT
1 TATTCTTAATATTACGTATATA-TTTT
*
24713647 TATTCTTATTATTACGTATATATTTT
1 TATTCTTAATATTACGTATATATTTT
24713673 AATACACATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (26 bp):
TATTCTTAATATTACGTATATATTTT
Found at i:24714841 original size:22 final size:22
Alignment explanation
Indices: 24714799--24714841 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
24714789 AAAATATGTT
* *
24714799 ATTTTAAGGTTTATTATTATGA
1 ATTTTAAGGTTTATGACTATGA
24714821 ATTTT-AGGTTTAATGACTATG
1 ATTTTAAGGTTT-ATGACTATG
24714842 GTTAATTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.30, C:0.02, G:0.16, T:0.51
Consensus pattern (22 bp):
ATTTTAAGGTTTATGACTATGA
Found at i:24715473 original size:7 final size:7
Alignment explanation
Indices: 24715460--24715541 Score: 114
Period size: 7 Copynumber: 12.0 Consensus size: 7
24715450 TTGGGGATAT
24715460 GGTTTAG
1 GGTTTAG
*
24715467 AGTTTAG
1 GGTTTAG
24715474 GGTTTAG
1 GGTTTAG
*
24715481 GCTTTAG
1 GGTTTAG
24715488 GG--TAG
1 GGTTTAG
24715493 GGTTTAG
1 GGTTTAG
24715500 GGTTTAG
1 GGTTTAG
24715507 GGTTTAG
1 GGTTTAG
24715514 GGTTTAG
1 GGTTTAG
*
24715521 GGTTTAA
1 GGTTTAG
*
24715528 GGTTTAT
1 GGTTTAG
24715535 GGTTTAG
1 GGTTTAG
24715542 AGTATAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
5 5 0.08
7 61 0.92
ACGTcount: A:0.17, C:0.01, G:0.39, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:24715499 original size:33 final size:33
Alignment explanation
Indices: 24715460--24715523 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
24715450 TTGGGGATAT
24715460 GGTTTAGAGTTTAGGGTTTAGGCTTTAGGGTAG
1 GGTTTAGAGTTTAGGGTTTAGGCTTTAGGGTAG
* *
24715493 GGTTTAGGGTTTAGGGTTTAGGGTTTAGGGT
1 GGTTTAGAGTTTAGGGTTTAGGCTTTAGGGT
24715524 TTAAGGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.16, C:0.02, G:0.42, T:0.41
Consensus pattern (33 bp):
GGTTTAGAGTTTAGGGTTTAGGCTTTAGGGTAG
Found at i:24715587 original size:15 final size:15
Alignment explanation
Indices: 24715567--24715598 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
24715557 TTTAATTTAG
24715567 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
24715582 AAGATAAATATATAT
1 AAGATAAATATAAAT
24715597 AA
1 AA
24715599 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:24717603 original size:26 final size:26
Alignment explanation
Indices: 24717574--24717626 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24717564 TCAAACATGC
24717574 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
24717600 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
24717626 A
1 A
24717627 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:24721472 original size:17 final size:17
Alignment explanation
Indices: 24721450--24721482 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24721440 CTTTTTTTTG
*
24721450 TGTGTTTTGTATATGTT
1 TGTGTTTAGTATATGTT
24721467 TGTGTTTAGTATATGT
1 TGTGTTTAGTATATGT
24721483 ACTGCTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.24, T:0.61
Consensus pattern (17 bp):
TGTGTTTAGTATATGTT
Found at i:24722466 original size:87 final size:87
Alignment explanation
Indices: 24722346--24722632 Score: 441
Period size: 87 Copynumber: 3.3 Consensus size: 87
24722336 TACCCTATTA
* * * *
24722346 CTTAGGGGGTTAAG-TCTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTA
1 CTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAAGCTCATCA
24722410 TCTTTGATCTGTTTCCCTACTG
66 TCTTTGATCTGTTTCCCTACTG
* * *
24722432 CTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCA
1 CTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAAGCTCATCA
* *
24722497 CCTTCGATCTGTTTCCCTACTG
66 TCTTTGATCTGTTTCCCTACTG
* *
24722519 CTCAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAAGTCTCGTC
1 CTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAAG-CTCATC
*
24722584 ATCTTTAATCTGTTTCCCTACTG
65 ATCTTTGATCTGTTTCCCTACTG
*
24722607 CTTAGGGGGTTAAGATTTGTAAATTT
1 CTTAGGGGGTTAAGATCTGTAAATTT
24722633 TCAATCTGCT
Statistics
Matches: 180, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
86 12 0.07
87 119 0.66
88 49 0.27
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (87 bp):
CTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAAGCTCATCA
TCTTTGATCTGTTTCCCTACTG
Found at i:24722476 original size:43 final size:42
Alignment explanation
Indices: 24722335--24722632 Score: 231
Period size: 43 Copynumber: 6.9 Consensus size: 42
24722325 TTTCAGGCTA
* * * *
24722335 TTACCCTATTACTTAGGGGGTTAAGTCTGTAAATTTGGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGTCTGTAAATTTAGCCTG
** *
24722377 TTACCCTACTGCTTAGGGGGTTAAAGCTCAT-TATCTTT-GATCTG
1 TTACCCTACTGCTTAGGGGGTT-AAG-TC-TGTAAATTTAG-CCTG
* * *
24722421 TTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTG
1 TTACCCTACTGCTTAGGGGGTTAAG-TCTGTAAATTTAGCCTG
* * * * ** * *
24722464 TTACCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGTCT-GTAAATTTAG-CCTG
* *
24722508 TTTCCCTACTGCTCAGGGGGTTAAGATCTGTAAATTTAGCCTG
1 TTACCCTACTGCTTAGGGGGTTAAG-TCTGTAAATTTAGCCTG
* ** **
24722551 TTACCCTACTGCTTAGGGGTTTAAAGTCTCGTCATCTTTAATCTG
1 TTACCCTACTGCTTAGGGGGTT-AAGTCT-GT-AAATTTAGCCTG
* *
24722596 TTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTT
1 TTACCCTACTGCTTAGGGGGTTAAG-TCTGTAAATTT
24722633 TCAATCTGCT
Statistics
Matches: 197, Mismatches: 46, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
42 23 0.12
43 72 0.37
44 69 0.35
45 33 0.17
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (42 bp):
TTACCCTACTGCTTAGGGGGTTAAGTCTGTAAATTTAGCCTG
Found at i:24737657 original size:26 final size:26
Alignment explanation
Indices: 24737621--24737730 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
24737611 CATGAAATTC
24737621 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
24737647 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
24737673 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
24737699 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
24737725 TTATCA
1 TTATCA
24737731 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:24743442 original size:26 final size:26
Alignment explanation
Indices: 24743413--24743518 Score: 185
Period size: 26 Copynumber: 4.1 Consensus size: 26
24743403 ATACAAAAGA
*
24743413 CATGAAACATTTACCTAACCCATTAT
1 CATGAAACATTTACCTAACCTATTAT
24743439 CATGAAACATTTACCTAACCTATTAT
1 CATGAAACATTTACCTAACCTATTAT
*
24743465 CATGGAACATTTACCTAACCTATTAT
1 CATGAAACATTTACCTAACCTATTAT
*
24743491 CATGGAACATTTACCTAACCTATTAT
1 CATGAAACATTTACCTAACCTATTAT
24743517 CA
1 CA
24743519 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
CATGAAACATTTACCTAACCTATTAT
Found at i:24759859 original size:33 final size:33
Alignment explanation
Indices: 24759791--24759859 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 33
24759781 ATATTAAAAG
* * *
24759791 ATATATATACGTAATATATATAATATAGTATTA
1 ATATATATACGTAATATACATAATATAGAAATA
* *
24759824 ATATATTTACGTAATATACA-CATATGAGAAATA
1 ATATATATACGTAATATACATAATAT-AGAAATA
24759857 ATA
1 ATA
24759860 ATAATATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 4 0.13
33 26 0.87
ACGTcount: A:0.49, C:0.06, G:0.07, T:0.38
Consensus pattern (33 bp):
ATATATATACGTAATATACATAATATAGAAATA
Found at i:24759956 original size:20 final size:21
Alignment explanation
Indices: 24759909--24759958 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
24759899 ATACACATAT
24759909 ATACAT-ATATTAAGAAATAC
1 ATACATAATATTAAGAAATAC
*
24759929 ATA-GTAATATTAA-AAATAC
1 ATACATAATATTAAGAAATAC
*
24759948 GTACATAATAT
1 ATACATAATAT
24759959 ATATACATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.32
Consensus pattern (21 bp):
ATACATAATATTAAGAAATAC
Found at i:24760017 original size:27 final size:30
Alignment explanation
Indices: 24759954--24760018 Score: 91
Period size: 27 Copynumber: 2.3 Consensus size: 30
24759944 ATACGTACAT
*
24759954 AATATATATACATATAATATAGTTATTAAG
1 AATATACATACATATAATATAGTTATTAAG
*
24759984 AAAATACATACA-AT-ATATAG-TATTAAG
1 AATATACATACATATAATATAGTTATTAAG
24760011 AATATACA
1 AATATACA
24760019 CAATGCATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 14 0.44
28 6 0.19
29 2 0.06
30 10 0.31
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (30 bp):
AATATACATACATATAATATAGTTATTAAG
Found at i:24760457 original size:143 final size:141
Alignment explanation
Indices: 24760222--24760622 Score: 414
Period size: 143 Copynumber: 2.9 Consensus size: 141
24760212 ATACATAAAC
* * * * *
24760222 ATAATAAA-AAAATATTAAAATAAAATAATTAGAAAATAATACTATGTACACAA-ATATAGACAT
1 ATAATAAATAAAATATTAAAATAAAGTAATTA-AAAATAATACCATGTATA-AATATATATATAT
* * * *
24760285 ATACATATA-AA-AAAATATACACTATTATTAATAATAATAA-ATATAATA-ATAAT-ATTATTA
64 ATACATATATAATAAAACATACACTAATATTAAT-ATAATAATA-ATAATAGA-AATAATGATGA
24760345 ACA-AAAAAAAGCAAAT
126 A-ATAAAAAAAGCAAAT
* *
24760361 ATAATATAATAAAAGTATTAAAATGAAGTAATTAAAAATAATACCATGTATAAATAAATATATAT
1 ATAATA-AATAAAA-TATTAAAATAAAGTAATTAAAAATAATACCATGTATAAATATATATATAT
*
24760426 ATACATATATAATAAAACATACACTAATATTAATATAATAATAATACTAGAAATAATGATGAAAT
64 ATACATATATAATAAAACATACACTAATATTAATATAATAATAATAATAGAAATAATGATGAAAT
* *
24760491 ATAAAAAGTAAAT
129 AAAAAAAGCAAAT
* * * *
24760504 ATAATACAATAGTAATATTAAAATAAAGTAATT-AAGATAATA-C---TATATATATATATATAC
1 ATAATA-AATA-AAATATTAAAATAAAGTAATTAAAAATAATACCATGTATAAATATATATATAT
* * *
24760564 ATACATACATATATAAAACATACACTAATATTATATACAATAATAATACTAGAAATAAT
64 ATACATATATA-ATAAAACATACACTAATATTA-ATATAATAATAATAATAGAAATAAT
24760623 AATAACTAGT
Statistics
Matches: 226, Mismatches: 23, Indels: 25
0.82 0.08 0.09
Matches are distributed among these distances:
138 24 0.11
139 27 0.12
140 28 0.12
141 37 0.16
142 43 0.19
143 65 0.29
144 2 0.01
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (141 bp):
ATAATAAATAAAATATTAAAATAAAGTAATTAAAAATAATACCATGTATAAATATATATATATAT
ACATATATAATAAAACATACACTAATATTAATATAATAATAATAATAGAAATAATGATGAAATAA
AAAAAGCAAAT
Found at i:24760610 original size:3 final size:3
Alignment explanation
Indices: 24760602--24760698 Score: 56
Period size: 3 Copynumber: 31.7 Consensus size: 3
24760592 TATTATATAC
* * *
24760602 AAT AAT AAT ACT AGA- AAT AAT AAT AACT AGT AAT AAT AAT ACATT AAA
1 AAT AAT AAT AAT A-AT AAT AAT AAT AA-T AAT AAT AAT AAT A-A-T AAT
** * * *
24760650 AAT AAT AAT -AT GTT AAT AACC AA- AAT ATT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
24760694 AAT AA
1 AAT AA
24760699 GAGAACTAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
2 5 0.07
3 59 0.82
4 6 0.08
5 2 0.03
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:24760636 original size:16 final size:16
Alignment explanation
Indices: 24760602--24760659 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
24760592 TATTATATAC
24760602 AATAATAAT-ACTAGA
1 AATAATAATAACTAGA
*
24760617 AATAATAATAACTAGT
1 AATAATAATAACTAGA
* *
24760633 AATAATAATACATTAAA
1 AATAATAATA-ACTAGA
24760650 AATAATAATA
1 AATAATAATA
24760660 TGTTAATAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
15 9 0.24
16 15 0.41
17 13 0.35
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.29
Consensus pattern (16 bp):
AATAATAATAACTAGA
Found at i:24762064 original size:20 final size:19
Alignment explanation
Indices: 24762016--24762076 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
24762006 ATAATGAAAT
*
24762016 ATATACTAATAT-TA-ATA
1 ATATAATAATATATACATA
*
24762033 ATAAATATAATAGTA-ACATA
1 ATATA-ATAATA-TATACATA
24762053 GATATAATAATATATACATA
1 -ATATAATAATATATACATA
24762073 ATAT
1 ATAT
24762077 GATATTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
17 4 0.11
18 5 0.14
19 8 0.23
20 14 0.40
21 4 0.11
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (19 bp):
ATATAATAATATATACATA
Found at i:24762101 original size:25 final size:24
Alignment explanation
Indices: 24762012--24762093 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 24
24762002 ACGTATAATG
*
24762012 AAATATATAC-TAATATTA-ATAA
1 AAATATATACATAATATGATATAA
* *
24762034 TAAATATAATA-GTAACATAGATATAA
1 -AAATAT-ATACATAATAT-GATATAA
*
24762060 TAATATATACATAATATGATATTAA
1 AAATATATACATAATATGATA-TAA
24762085 AAATATATA
1 AAATATATA
24762094 TATGATATAG
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
23 6 0.13
24 15 0.32
25 22 0.47
26 4 0.09
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATATATACATAATATGATATAA
Found at i:24762496 original size:23 final size:23
Alignment explanation
Indices: 24762470--24762531 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 23
24762460 ATTATTAATA
24762470 ATACTACAGAAATATATACACAT
1 ATACTACAGAAATATATACACAT
*
24762493 ATAC-ATTAG--ATATATACACAT
1 ATACTA-CAGAAATATATACACAT
*
24762514 ATA-TACATTAAATATATA
1 ATACTACA-GAAATATATA
24762532 TATACATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
20 1 0.03
21 16 0.52
22 1 0.03
23 13 0.42
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.32
Consensus pattern (23 bp):
ATACTACAGAAATATATACACAT
Found at i:24762540 original size:23 final size:23
Alignment explanation
Indices: 24762481--24762541 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
24762471 TACTACAGAA
*
24762481 ATATATACACATATACATTAGAT
1 ATATATACACATATACATTAAAT
* *
24762504 ATATACACATATATACATTAAAT
1 ATATATACACATATACATTAAAT
*
24762527 ATATATATACATATA
1 ATATATACACATATA
24762542 TAATAACATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (23 bp):
ATATATACACATATACATTAAAT
Found at i:24762554 original size:23 final size:23
Alignment explanation
Indices: 24762481--24762554 Score: 71
Period size: 23 Copynumber: 3.1 Consensus size: 23
24762471 TACTACAGAA
* *
24762481 ATATATACACATATACATTAGA-T
1 ATATATACATATATACA-TAAATT
*
24762504 ATATACACATATATACATTAAATAT
1 ATATATACATATATACA-TAAAT-T
24762529 ATATATACATATATA-ATAACATT
1 ATATATACATATATACATAA-ATT
24762552 ATA
1 ATA
24762555 CACTAATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
23 26 0.59
24 3 0.07
25 15 0.34
ACGTcount: A:0.51, C:0.11, G:0.01, T:0.36
Consensus pattern (23 bp):
ATATATACATATATACATAAATT
Found at i:24762554 original size:25 final size:25
Alignment explanation
Indices: 24762481--24762543 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
24762471 TACTACAGAA
*
24762481 ATATATACAC--ATATACATT--AG
1 ATATATACACATATATACATTAAAT
24762502 ATATATACACATATATACATTAAAT
1 ATATATACACATATATACATTAAAT
*
24762527 ATATATATACATATATA
1 ATATATACACATATATA
24762544 ATAACATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.28
23 9 0.25
25 17 0.47
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.37
Consensus pattern (25 bp):
ATATATACACATATATACATTAAAT
Found at i:24763591 original size:14 final size:14
Alignment explanation
Indices: 24763568--24763597 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24763558 AGGTGGTGGC
*
24763568 AGAGGTAAGTGGGG
1 AGAGGCAAGTGGGG
24763582 AGAGGCAAGTGGGG
1 AGAGGCAAGTGGGG
24763596 AG
1 AG
24763598 CTAGGGTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.03, G:0.57, T:0.10
Consensus pattern (14 bp):
AGAGGCAAGTGGGG
Found at i:24764901 original size:23 final size:23
Alignment explanation
Indices: 24764883--24764925 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
24764873 AGTTTTTTTA
24764883 TTTTTA-TTTTCAAAATTTTATT
1 TTTTTACTTTTCAAAATTTTATT
*
24764905 TTTTTACTTTTTAAAATTTTA
1 TTTTTACTTTTCAAAATTTTA
24764926 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTTACTTTTCAAAATTTTATT
Found at i:24766215 original size:24 final size:23
Alignment explanation
Indices: 24766178--24766231 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
24766168 AATACTATTT
24766178 TATTTTAACTCAAAATTTTTAATC
1 TATTTTAACTC-AAATTTTTAATC
* *
24766202 TATTTTGAAC-CAAATTTTTATTT
1 TATTTT-AACTCAAATTTTTAATC
24766225 TATTTTA
1 TATTTTA
24766232 TTCAAACTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 1 0.04
23 16 0.59
24 7 0.26
25 3 0.11
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (23 bp):
TATTTTAACTCAAATTTTTAATC
Found at i:24767046 original size:1 final size:1
Alignment explanation
Indices: 24767042--24767075 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
24767032 CCCAAACAAT
*
24767042 AAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
24767076 GGAAGAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:24767374 original size:31 final size:32
Alignment explanation
Indices: 24767302--24767375 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 32
24767292 GATTTGGTGT
* * *
24767302 AATTATACATGTGAAACTTGAATTATGAATTA
1 AATTATATATATGAAACTTAAATTATGAATTA
* * *
24767334 TA-TGTATATATGAAACTTAAATTTTG-ATTA
1 AATTATATATATGAAACTTAAATTATGAATTA
24767364 AATTATATATAT
1 AATTATATATAT
24767376 TTAAAAAATG
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
30 5 0.15
31 27 0.82
32 1 0.03
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (32 bp):
AATTATATATATGAAACTTAAATTATGAATTA
Found at i:24767857 original size:2 final size:2
Alignment explanation
Indices: 24767852--24767900 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
24767842 AACAACTAGT
24767852 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24767894 TA TA TA T
1 TA TA TA T
24767901 GTAAGGAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24768117 original size:13 final size:14
Alignment explanation
Indices: 24768092--24768121 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
24768082 GAATTCTCAT
24768092 TTTATTAAAATAAA
1 TTTATTAAAATAAA
24768106 TTTATT-AAATAAA
1 TTTATTAAAATAAA
24768119 TTT
1 TTT
24768122 GTATAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTATTAAAATAAA
Found at i:24768154 original size:12 final size:12
Alignment explanation
Indices: 24768139--24768172 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 12
24768129 AAATAAAAAT
24768139 TTAAAATTTATA
1 TTAAAATTTATA
24768151 TTAAACTATTTATA
1 TTAAA--ATTTATA
24768165 TTAAAATT
1 TTAAAATT
24768173 ATTATTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 8 0.40
14 12 0.60
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (12 bp):
TTAAAATTTATA
Found at i:24770293 original size:27 final size:28
Alignment explanation
Indices: 24770263--24770332 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
24770253 ATAGTGAATC
*
24770263 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
24770290 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
24770318 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24770333 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:24770408 original size:42 final size:42
Alignment explanation
Indices: 24770346--24770448 Score: 179
Period size: 42 Copynumber: 2.4 Consensus size: 42
24770336 CAAATTTTAA
*
24770346 ACCCGCACACGTTAGTGCCAATCTTGTCACTGTGTCCACTTAT
1 ACCCGCACAC-TTAGTGCCAATCTTGTCACCGTGTCCACTTAT
*
24770389 ACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCATTTAT
1 ACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCACTTAT
24770431 ACCCGCACACTTAGTGCC
1 ACCCGCACACTTAGTGCC
24770449 GAGACCAATA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
42 48 0.83
43 10 0.17
ACGTcount: A:0.21, C:0.35, G:0.16, T:0.28
Consensus pattern (42 bp):
ACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCACTTAT
Found at i:24774295 original size:26 final size:26
Alignment explanation
Indices: 24774259--24774445 Score: 322
Period size: 26 Copynumber: 7.2 Consensus size: 26
24774249 CATGAAATTC
*
24774259 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
24774285 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
24774311 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
24774337 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
24774363 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
24774389 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
24774415 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
24774440 TTATCA
1 TTATCA
24774446 ATTTGTATCA
Statistics
Matches: 157, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
25 23 0.15
26 134 0.85
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:24778069 original size:21 final size:21
Alignment explanation
Indices: 24778022--24778065 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
24778012 AATCACTTTC
*
24778022 AAATTTGAAAATATTATAATT
1 AAATTTGAAAATAATATAATT
24778043 AAATTT-AAAA-AATATAAGTT
1 AAATTTGAAAATAATATAA-TT
24778063 AAA
1 AAA
24778066 ATTTTTGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 9 0.43
21 6 0.29
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (21 bp):
AAATTTGAAAATAATATAATT
Found at i:24780082 original size:17 final size:17
Alignment explanation
Indices: 24780057--24780090 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24780047 CTAATGTGGC
* *
24780057 ATTAGATTAAATATTAA
1 ATTAAATTAAAGATTAA
24780074 ATTAAATTAAAGATTAA
1 ATTAAATTAAAGATTAA
24780091 TAATAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
ATTAAATTAAAGATTAA
Found at i:24780419 original size:35 final size:35
Alignment explanation
Indices: 24780372--24780441 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
24780362 TCTTGCAAAC
*
24780372 TTTAATCTATAATCCCTTGATTTTTACTATAAATG
1 TTTAATCAATAATCCCTTGATTTTTACTATAAATG
*
24780407 TTTAATCAATAATCCCTTGGTTTTTACTATAAATG
1 TTTAATCAATAATCCCTTGATTTTTACTATAAATG
24780442 ATGTTTTGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.47
Consensus pattern (35 bp):
TTTAATCAATAATCCCTTGATTTTTACTATAAATG
Found at i:24794568 original size:16 final size:16
Alignment explanation
Indices: 24794549--24794579 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24794539 GAATTTTGAA
*
24794549 TTTTGAATTTTTTTAG
1 TTTTGAATATTTTTAG
24794565 TTTTGAATATTTTTA
1 TTTTGAATATTTTTA
24794580 TAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.68
Consensus pattern (16 bp):
TTTTGAATATTTTTAG
Found at i:24794578 original size:18 final size:19
Alignment explanation
Indices: 24794549--24794592 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
24794539 GAATTTTGAA
24794549 TTTTGAAT-TTTTT-T-AG
1 TTTTGAATATTTTTATAAG
*
24794565 TTTTGAATATTTTTATAAT
1 TTTTGAATATTTTTATAAG
24794584 TTTTGAATA
1 TTTTGAATA
24794593 ATTTGTTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 5 0.21
18 1 0.04
19 10 0.42
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (19 bp):
TTTTGAATATTTTTATAAG
Found at i:24807935 original size:24 final size:24
Alignment explanation
Indices: 24807908--24807955 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
24807898 AATTATCTCA
* *
24807908 TACTAAATATATAAA-ATGAAAGTT
1 TACTAAAAACATAAATAT-AAAGTT
24807932 TACTAAAAACATAAATATAAAGTT
1 TACTAAAAACATAAATATAAAGTT
24807956 GTGTTGGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (24 bp):
TACTAAAAACATAAATATAAAGTT
Found at i:24808015 original size:20 final size:19
Alignment explanation
Indices: 24807992--24808037 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
24807982 CTTTTTTTTA
*
24807992 TTTTGATTGTTATATAAAT
1 TTTTTATTGTTATATAAAT
* * *
24808011 TTTTTATTTTTTTATTAAT
1 TTTTTATTGTTATATAAAT
24808030 TTTTTATT
1 TTTTTATT
24808038 TTAAAATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (19 bp):
TTTTTATTGTTATATAAAT
Found at i:24808620 original size:19 final size:20
Alignment explanation
Indices: 24808579--24808623 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
24808569 AAAACTATGA
*
24808579 TAAATTAAAGAAATAAATAT
1 TAAATTAAACAAATAAATAT
* *
24808599 TAAATT-AACAAATGAATTT
1 TAAATTAAACAAATAAATAT
24808618 TAAATT
1 TAAATT
24808624 TTTTATAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (20 bp):
TAAATTAAACAAATAAATAT
Found at i:24813060 original size:131 final size:132
Alignment explanation
Indices: 24812813--24813063 Score: 414
Period size: 131 Copynumber: 1.9 Consensus size: 132
24812803 GTATTCATCC
* * *
24812813 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTTGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
*
24812878 TTGGGTTGCAATTTCGCGTTTGCTCAAAAGAATCGAATATCACTTCGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAAGAATCGAATATCACTTCAAAATTTCACTCGCGTCTT
24812943 TT
131 TT
*
24812945 AAAA-TTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCTCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * *
24813009 TTGGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCA
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAAGAATCGAATATCACTTCAAAATTTCA
24813064 TTCATATCTT
Statistics
Matches: 110, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
131 106 0.96
132 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAAGAATCGAATATCACTTCAAAATTTCACTCGCGTCTT
TT
Found at i:24813079 original size:131 final size:132
Alignment explanation
Indices: 24812813--24813095 Score: 406
Period size: 131 Copynumber: 2.2 Consensus size: 132
24812803 GTATTCATCC
* * * *
24812813 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTTGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * *
24812878 TTGGGTTGCAATTTCGCGTTTGCTCAAAAGAATCGAATATCACTTCGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAAGAATCGAATATCACTTCAAAATTTCACTCACATCTT
24812943 -T
131 CT
* *
24812944 TAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCTCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * *
24813009 TTGGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCATTCATATCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAAGAATCGAATATCACTTCAAAATTTCACTCACATCTT
24813074 CT
131 CT
* *
24813076 AAAAATTATTTAAAACGAAG
1 AAAAATTCTTCAAAACGAAG
24813096 GCAATATTTG
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
131 115 0.86
132 18 0.14
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAAGAATCGAATATCACTTCAAAATTTCACTCACATCTT
CT
Found at i:24813145 original size:131 final size:131
Alignment explanation
Indices: 24812821--24813176 Score: 324
Period size: 131 Copynumber: 2.7 Consensus size: 131
24812811 CCAAAAGTTC
* ** * * ***
24812821 TTCAAAACGAAGACGAGATTCGATGTTTGGCAATTTGCGGAATCGTGCCCTAACGTGTTGGGTTG
1 TTCAAAACGAAGACAAGATTCGACATTTAGCAATTCGAAAAATCGTGCCCTAACGTGTTGGGTTG
* * * * *
24812886 CAATTTCGCGTTTGCTCAAAAGAATCGAATATCACTTCGAAATTTCACTCGCGTCTTTTAAAATT
66 CAATTTCGTGTTTGCTCAAAAGAATCGAATATCACTTCAAAATTTCACTCACATCTTTAAAAATT
*
24812951 C
131 A
* * *** *
24812952 TTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCTCTAACGTGTTGGGTTG
1 TTCAAAACGAAGACAAGATTCGACATTTAGCAATTCGAAAAATCGTGCCCTAACGTGTTGGGTTG
* * * * *
24813017 CAATTTCGTGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCATTCATATCTTCTAAAAAT
66 CAATTTCGTGTTTGCTCAAAAGAATCGAATATCACTTCAAAATTTCACTCACATCTT-TAAAAAT
24813082 TA
130 TA
* * * * * * * * *
24813084 TTTAAAACGAAGGCAATATTTGCCGTTT-GACAATTC-AAAAATCATGCCCTATCGTGCTGGGTT
1 TTCAAAACGAAGACAAGATTCGACATTTAG-CAATTCGAAAAATCGTGCCCTAACGTGTTGGGTT
**
24813147 GTGATTTC-TCGTTTGCTCAAAACG-ATCGAA
65 GCAATTTCGT-GTTTGCTCAAAA-GAATCGAA
24813177 CATTCCTTTA
Statistics
Matches: 187, Mismatches: 34, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
130 1 0.01
131 153 0.82
132 33 0.18
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (131 bp):
TTCAAAACGAAGACAAGATTCGACATTTAGCAATTCGAAAAATCGTGCCCTAACGTGTTGGGTTG
CAATTTCGTGTTTGCTCAAAAGAATCGAATATCACTTCAAAATTTCACTCACATCTTTAAAAATT
A
Found at i:24825149 original size:132 final size:132
Alignment explanation
Indices: 24824944--24825721 Score: 1073
Period size: 132 Copynumber: 5.9 Consensus size: 132
24824934 CAGATCCTGC
* * *
24824944 TTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGACGAATCTTGACTTCCTGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * * *
24825009 GCAAATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATTTTAGATCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAAATATAGATCTC
24825074 GT
131 GT
* *
24825076 TTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACGACGAATCTTGACTTCCTGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
*
24825141 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTAGAGTAGGCTG-AAATATAGATCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAAATATAGATCTC
24825205 GT
131 GT
* * *
24825207 TTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGACGAATCTTA-ACTCCCGGAAGTTGCAGTGA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATC-TAGACTTCCTGAAGTTGCAGTGA
* * *
24825271 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGTCT
65 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAAATATAGATCT
24825336 CGT
130 CGT
** * * *
24825339 TTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACGGCGAATCTAGACTTCCTGAAGTTTCAGTGAG
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * * *
24825404 GTAGATTTAAGCCACTAACCTAGCTCTCTAAAGTTGTAGTGGAGTAAGCTGAGAAATATAGATCT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA-AAATATAGATCT
24825469 CGT
130 CGT
* * * *
24825472 TTCCCTGAAGTTGCAATGGAGCAGATCAAAGACGACGACTCTAGGCTTCCTGAAGTTGCAGTGAG
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* *
24825537 GCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATTT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA-AAATATAGATCT
*
24825602 TGT
130 CGT
** * * ** * *
24825605 TTCTTTGATA-TTGTAGTGGAACAGATCAAAGACGGTGAATCTAGGCTTCCTGATGTTGCAGTGA
1 TTCCCTGA-AGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGA
* *
24825669 AGCAGATTT-AG--ACTATCGCCCTAGCTCCTTAAAGTTGTAGTGGAGTAGGCTGA
65 AGCAGATTTAAGTCACTA---ACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
24825722 CGATTGCAGA
Statistics
Matches: 582, Mismatches: 56, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
130 4 0.01
131 123 0.21
132 227 0.39
133 227 0.39
134 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (132 bp):
TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAAATATAGATCTC
GT
Found at i:24825412 original size:263 final size:262
Alignment explanation
Indices: 24824944--24825721 Score: 1105
Period size: 263 Copynumber: 2.9 Consensus size: 262
24824934 CAGATCCTGC
* * *
24824944 TTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGACGAATCTTGACTTCCTGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTTAACTTCCTGAAGTTGCAGTGAA
* *
24825009 GCAAATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATTTTAGATCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATCTC
* *
24825074 GTTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACGACGAATCTTGACTTCCTGAAGTTGCAGTG
131 GTTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTG
*
24825139 AAGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTAGAGTAGGCTGAAATATAGATCT
196 AAGCAGATTTAAG-CACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATATAGATCT
24825204 CGT
260 CGT
* * *
24825207 TTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGACGAATCTTAACTCCCGGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTTAACTTCCTGAAGTTGCAGTGAA
*
24825272 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGTCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATCTC
* *
24825337 GTTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACGGCGAATCTAGACTTCCTGAAGTTTCAGTG
131 GTTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTG
* * * *
24825402 AGGTAGATTTAAGCCACTAACCTAGCTCTCTAAAGTTGTAGTGGAGTAAGCTGAGAAATATAGAT
196 AAGCAGATTTAAG-CACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT--GAAATATAGAT
24825467 CTCGT
258 CTCGT
* * *
24825472 TTCCCTGAAGTTGCAATGGAGCAGATCAAAGACGACGACTC-TAGGCTTCCTGAAGTTGCAGTGA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTTA-ACTTCCTGAAGTTGCAGTGA
* * * * *
24825536 GGCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATT
65 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA-AATTTTAGATC
* ** * * * * * *
24825601 TTGTTTCTTTGATA-TTGTAGTGGAACAGATCAAAGACGGTGAATCTAGGCTTCCTGATGTTGCA
129 TCGTTTCCCTGA-AGTTGCAGTGGAGCAGATTAAAGACGGCGAATCTAGACTTCCTGAAGTTGCA
* *
24825665 GTGAAGCAGATTT-AG-ACTATCGCCCTAGCTCCTTAAAGTTGTAGTGGAGTAGGCTGA
193 GTGAAGCAGATTTAAGCACTA---ACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
24825722 CGATTGCAGA
Statistics
Matches: 459, Mismatches: 48, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
263 232 0.51
264 4 0.01
265 124 0.27
266 98 0.21
267 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (262 bp):
TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTTAACTTCCTGAAGTTGCAGTGAA
GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATCTC
GTTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTG
AAGCAGATTTAAGCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATATAGATCTC
GT
Found at i:24825527 original size:133 final size:133
Alignment explanation
Indices: 24824944--24825721 Score: 1070
Period size: 133 Copynumber: 5.9 Consensus size: 133
24824934 CAGATCCTGC
* * *
24824944 TTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGACGAATCTTGACTTCCTGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * * *
24825009 GCAAATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGA-AATTTTAGATCT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATCT
24825073 CGT
131 CGT
* *
24825076 TTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACGACGAATCTTGACTTCCTGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
*
24825141 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTAGAGTAGGCT--GAAATATAGATCT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATCT
24825204 CGT
131 CGT
* * *
24825207 TTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGACGAATCTTA-ACTCCCGGAAGTTGCAGTGA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATC-TAGACTTCCTGAAGTTGCAGTGA
* * *
24825271 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA-AATTTTAGGTC
65 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATC
24825335 TCGT
130 TCGT
** * * *
24825339 TTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACGGCGAATCTAGACTTCCTGAAGTTTCAGTGAG
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * * *
24825404 GTAGATTTAAGCCACTAACCTAGCTCTCTAAAGTTGTAGTGGAGTAAGCTGAGAAATATAGATCT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATCT
24825469 CGT
131 CGT
* * * *
24825472 TTCCCTGAAGTTGCAATGGAGCAGATCAAAGACGACGACTCTAGGCTTCCTGAAGTTGCAGTGAG
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* *
24825537 GCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATTT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATCT
*
24825602 TGT
131 CGT
** * * ** * *
24825605 TTCTTTGATA-TTGTAGTGGAACAGATCAAAGACGGTGAATCTAGGCTTCCTGATGTTGCAGTGA
1 TTCCCTGA-AGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGA
* *
24825669 AGCAGATTT-AG--ACTATCGCCCTAGCTCCTTAAAGTTGTAGTGGAGTAGGCTGA
65 AGCAGATTTAAGTCACTA---ACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
24825722 CGATTGCAGA
Statistics
Matches: 580, Mismatches: 56, Indels: 19
0.89 0.09 0.03
Matches are distributed among these distances:
130 4 0.01
131 122 0.21
132 226 0.39
133 227 0.39
134 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (133 bp):
TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATCT
CGT
Found at i:24829140 original size:19 final size:20
Alignment explanation
Indices: 24829108--24829148 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
24829098 GAATGAAATC
24829108 GAGAGAAGAAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
24829128 GAGAGAA-AAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
24829147 GA
1 GA
24829149 AAATGAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.71, C:0.05, G:0.24, T:0.00
Consensus pattern (20 bp):
GAGAGAAGAAACAAAGAAAA
Found at i:24829222 original size:11 final size:12
Alignment explanation
Indices: 24829194--24829227 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
24829184 AATTTAAGAG
24829194 TGAAAAAGAAAT
1 TGAAAAAGAAAT
*
24829206 TGAAAAAGAGAT
1 TGAAAAAGAAAT
24829218 T-AAAAAGAAA
1 TGAAAAAGAAA
24829228 GAAATTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (12 bp):
TGAAAAAGAAAT
Found at i:24829243 original size:15 final size:14
Alignment explanation
Indices: 24829196--24829246 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
24829186 TTTAAGAGTG
24829196 AAAAAGAAATTG--
1 AAAAAGAAATTGAA
* *
24829208 AAAAAGAGATTAAA
1 AAAAAGAAATTGAA
24829222 AAGAAAGAAATTGAA
1 AA-AAAGAAATTGAA
24829237 ACAAAAGAAA
1 A-AAAAGAAA
24829247 CGAGAGTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 10 0.32
14 2 0.06
15 18 0.58
16 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.16, T:0.12
Consensus pattern (14 bp):
AAAAAGAAATTGAA
Found at i:24831282 original size:10 final size:10
Alignment explanation
Indices: 24831269--24831314 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
24831259 AGCTCACTTG
24831269 AGCTCGTTTT
1 AGCTCGTTTT
*
24831279 AGCTCGTTTG
1 AGCTCGTTTT
*
24831289 AGCTCGAATTT
1 AGCTCG-TTTT
*
24831300 AGCTCGTTTC
1 AGCTCGTTTT
24831310 AGCTC
1 AGCTC
24831315 ATTCCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:24831302 original size:21 final size:20
Alignment explanation
Indices: 24831266--24831314 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
24831256 ATCAGCTCAC
*
24831266 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTAGCTCGT
24831286 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCG-ATTTAGCTCGT
*
24831307 TTCAGCTC
1 TTGAGCTC
24831315 ATTCCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:24835201 original size:131 final size:132
Alignment explanation
Indices: 24834951--24835198 Score: 410
Period size: 131 Copynumber: 1.9 Consensus size: 132
24834941 GTATTCATCC
* *
24834951 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGAAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGAAATCGTGCCCTAACGTG
* * *
24835016 TTGGGTTGTAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAACCGAATATCACTTCGAAATTTCACTCGCGTCTT
24835081 TT
131 TT
*
24835083 AAAA-TTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGAAATCGTGCCCTAACGTG
* *
24835147 TTGGGTTGCAATTTCACGTTTGCTCAAAATAACCGAGTATCCCTTC-AAATTT
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAACCGAATATCACTTCGAAATTT
24835199 TCATTCATAT
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
130 6 0.06
131 98 0.91
132 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGAAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCACGTTTGCTCAAAATAACCGAATATCACTTCGAAATTTCACTCGCGTCTT
TT
Found at i:24835264 original size:131 final size:130
Alignment explanation
Indices: 24834959--24835306 Score: 358
Period size: 131 Copynumber: 2.7 Consensus size: 130
24834949 CCAAAAGTTC
* * * * *
24834959 TTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGAAATCGTGCCCTAACGTGTTGGGTTG
1 TTCAAAACAAAGACAAGATTCGACGTTTGACAATTCGAG-AATCGTGCCCTAACGTGTTGGGTTG
* * * * *
24835024 TAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCGAAATTTCACTCGCGTCTTTTAAAATT
65 TAATTTCACGTTTGCTCAAAATAACCGAATATCACTTCGAAATTTCACTCACATCTTTAAAAATT
*
24835089 C
130 A
* * ** *
24835090 TTCAAAACGAAGACGAGATTCGATATTT-AGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACAAAGACAAGATTCGACGTTTGA-CAATTCG-AGAATCGTGCCCTAACGTGTTGGGTT
* * * * *
24835154 GCAATTTCACGTTTGCTCAAAATAACCGAGTATCCCTTC-AAATTTTCATTCATATCTTCTAAAA
64 GTAATTTCACGTTTGCTCAAAATAACCGAATATCACTTCGAAA-TTTCACTCACATCTT-TAAAA
24835218 ATTA
127 ATTA
* * * * * * * *
24835222 TTTAAAACAAAGGCAATATTTGGCGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGT
1 TTCAAAACAAAGACAAGATTCGACGTTTGACAATTCGAGAATCGTGCCCTAACGTGTTGGGTTGT
* *
24835287 GATTTCTCGTTTGCTCAAAA
66 AATTTCACGTTTGCTCAAAA
24835307 CGATCGAACA
Statistics
Matches: 182, Mismatches: 30, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
130 3 0.02
131 144 0.79
132 34 0.19
133 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (130 bp):
TTCAAAACAAAGACAAGATTCGACGTTTGACAATTCGAGAATCGTGCCCTAACGTGTTGGGTTGT
AATTTCACGTTTGCTCAAAATAACCGAATATCACTTCGAAATTTCACTCACATCTTTAAAAATTA
Found at i:24835449 original size:133 final size:129
Alignment explanation
Indices: 24835258--24835560 Score: 313
Period size: 130 Copynumber: 2.3 Consensus size: 129
24835248 TTGACAATTC
* * * * * *
24835258 GAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACGATCGAACATTCCTT
1 GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTT-TCATTGGCTCAAAACGATCGAACATCCCTA
* * * * **
24835323 TATATTTTCATTCATGTTTATAAAAAATTTACTT-AACAACGAAGACGATGTTCAATGTTTGGCG
65 CAGAATTTCACTCACATTT-TAAAAAA--TACTTCAA-AACGAAGACGATGTTCAATGTTTGGCG
24835387 ATTT
126 ATTT
* * * *
24835391 GAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTCTTCATTGGTTCGAAAC-ATTTGAACATCCCT
1 GAGAATCATGCCCTATCGTGCTGGGTTGCGCTT-TTCATTGGCTCAAAACGA-TCGAACATCCCT
** * * * *
24835455 ACAGAATTTCACTCACATTTTTTAAAATCCTTCAAAATGAAGGCGATGTTCGATGTTTGGCGATT
64 ACAGAATTTCACTCACATTTTAAAAAATACTTCAAAACGAAGACGATGTTCAATGTTTGGCGATT
24835520 T
129 T
*
24835521 GAGAATCAAGCCCTATCGTGCTGGGTTGCGCTTTTTCATT
1 GAGAATCATGCCCTATCGTGCTGGGTTGCGC-TTTTCATT
24835561 TCCCAAAATA
Statistics
Matches: 142, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
130 67 0.47
131 4 0.03
132 6 0.04
133 64 0.45
134 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (129 bp):
GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTCATTGGCTCAAAACGATCGAACATCCCTAC
AGAATTTCACTCACATTTTAAAAAATACTTCAAAACGAAGACGATGTTCAATGTTTGGCGATTT
Found at i:24841634 original size:22 final size:19
Alignment explanation
Indices: 24841607--24841656 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 19
24841597 CGCTATATGT
24841607 TGTACATATACTGATATACATA
1 TGTACATATACTG-TAT--ATA
*
24841629 TGTACATAT-GTGTATATA
1 TGTACATATACTGTATATA
24841647 TGTACATATA
1 TGTACATATA
24841657 ATAGAAAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 12 0.46
20 3 0.12
21 2 0.08
22 9 0.35
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (19 bp):
TGTACATATACTGTATATA
Found at i:24843573 original size:3 final size:3
Alignment explanation
Indices: 24843550--24843593 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
24843540 ATTTTGTGGA
* *
24843550 AAG AAG TAAA AAG AA- AAG AAG AAG AAG AAG AAG AAG GAG AAG AA
1 AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
24843594 AGGGGTTAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
2 2 0.06
3 31 0.89
4 2 0.06
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:24849458 original size:298 final size:302
Alignment explanation
Indices: 24848848--24849472 Score: 707
Period size: 303 Copynumber: 2.1 Consensus size: 302
24848838 ATCATTTAAG
* * *
24848848 AGCTTAAATAATTGTAAGTATAGATATACAATTGATGAAAATAATAAAATGTATAATAAAATTAA
1 AGCTTAAATAATAGTAAGTATAAATATACAATTGACGAAAATAATAAAATGTATAATAAAATTAA
* * * * *
24848913 AATTTACAAAAATATCAACTTGAAGCATTAGCTGAATGATAAAGTAAATGTTTTGCTAATGTAAT
66 AATGTACAAAAACATCAAATTGAAGCATTAGCTGAATGATAAAGTAAATGTTTTACTAATATAAT
* * * * *
24848978 TGATTGAATGTGGGTTTAAATCTCACTAGTTTCATATTTTTATTGATTTTTTAAAATAAAAGAAT
131 TGATTGAATGTGGATTCAAATCTCACCAGTTTCATATTTTTATTGAGTTTTTAAAATAAAAGAAC
*
24849043 TAAAATACCCTCGAATAATATAACTTATCTTTTATTACGAATAGGTATTTCTATATTTCTCATAA
196 TAAAATACCCTCGAATAATATAACTTA-CTTTTATTACGAATAGGCATTTCTATATTTCTCATAA
* ** * *
24849108 CTGAGTTGGTACCTGGTTGACTCATGACACCAACTCAATCAGG
260 CTAAGTTGGTACCTAATTAACTCATGACACCAACTCAATCAGA
* * ** * * *
24849151 AGATTAAATAATAGTAAGTATAAATATACAATTGACGGAGGTGATAAAGTGTGTAATAAAATTAA
1 AGCTTAAATAATAGTAAGTATAAATATACAATTGACGAAAATAATAAAATGTATAATAAAATTAA
* * * * * * *
24849216 AATGTATAAAAACGTCAAATT-AATGCTTTAGTTGAGTGGTAAATTAAAAT-TTTTACTAATATA
66 AATGTACAAAAACATCAAATTGAA-GCATTAGCTGAATGATAAAGT-AAATGTTTTACTAATATA
* *
24849279 ATTTATTG-ATGTGGATTCAAATCTCACCAGTTTTAT-TTTTTATTG-GTTTTTAAAATAAAA-A
129 ATTGATTGAATGTGGATTCAAATCTCACCAGTTTCATATTTTTATTGAGTTTTTAAAATAAAAGA
* * **
24849340 GACTAAAATACTCTTGAATAATATAACTTA-TTTTATTGTGAA-AGGGCATTTCTATAATTTC-C
194 -ACTAAAATACCCTCGAATAATATAACTTACTTTTATTACGAATA-GGCATTTCTAT-ATTTCTC
* * *
24849402 ATAA-TCAAGTTGGT-GCTCAATTAACTCATGACACCAACTCAATTATA
256 ATAACT-AAGTTGGTACCT-AATTAACTCATGACACCAACTCAATCAGA
24849449 AGCTTAAATAATAGTATAG-ATAAA
1 AGCTTAAATAATAGTA-AGTATAAA
24849473 ATATTTATAA
Statistics
Matches: 271, Mismatches: 43, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
297 4 0.01
298 75 0.28
299 8 0.03
300 40 0.15
301 9 0.03
302 26 0.10
303 105 0.39
304 4 0.01
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (302 bp):
AGCTTAAATAATAGTAAGTATAAATATACAATTGACGAAAATAATAAAATGTATAATAAAATTAA
AATGTACAAAAACATCAAATTGAAGCATTAGCTGAATGATAAAGTAAATGTTTTACTAATATAAT
TGATTGAATGTGGATTCAAATCTCACCAGTTTCATATTTTTATTGAGTTTTTAAAATAAAAGAAC
TAAAATACCCTCGAATAATATAACTTACTTTTATTACGAATAGGCATTTCTATATTTCTCATAAC
TAAGTTGGTACCTAATTAACTCATGACACCAACTCAATCAGA
Found at i:24851129 original size:3 final size:3
Alignment explanation
Indices: 24851121--24851237 Score: 87
Period size: 3 Copynumber: 39.0 Consensus size: 3
24851111 TTTCGTATTC
* * * *
24851121 TAT TAT TA- TATT TAC TAC TAT TAA TAT TAC TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
24851166 T-T TAT TTT CTAC TAT TAT TAT TAT CAT TAT TAT TAT TAG TAT T-T
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
24851210 TAC TAT TAT TAG TAT TAG TAT TAAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT
24851238 CCCTTAATAT
Statistics
Matches: 88, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
2 6 0.07
3 76 0.86
4 6 0.07
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:24851164 original size:39 final size:38
Alignment explanation
Indices: 24851121--24851237 Score: 137
Period size: 39 Copynumber: 3.0 Consensus size: 38
24851111 TTTCGTATTC
24851121 TATTATTATATTTACTACTATTAATATTACTATTATTAT
1 TATTATTATATTTACTACTATTAATATTA-TATTATTAT
* * *
24851160 TATTATTTTATTTTCTACTATTATTATTATCATTATTAT
1 TATTATTATATTTACTACTATTAATATTAT-ATTATTAT
* * *
24851199 TATTAGTAT-TTTACTATTATTAGTATTAGTATTAATTAT
1 TATTATTATATTTACTACTATTAATATTA-TATT-ATTAT
24851238 CCCTTAATAT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
38 20 0.30
39 47 0.70
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (38 bp):
TATTATTATATTTACTACTATTAATATTATATTATTAT
Found at i:24851580 original size:17 final size:16
Alignment explanation
Indices: 24851544--24851580 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
24851534 TGTAAATATA
24851544 TATT-TTTTTTATTTT
1 TATTATTTTTTATTTT
24851559 T-TTATTTTTTATTTAT
1 TATTATTTTTTATTT-T
24851575 TATTAT
1 TATTAT
24851581 GTACATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 2 0.11
15 11 0.58
16 2 0.11
17 4 0.21
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TATTATTTTTTATTTT
Found at i:24858396 original size:18 final size:18
Alignment explanation
Indices: 24858370--24858413 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24858360 CACAGTTTGA
**
24858370 CAAATTAATACATCTCAC
1 CAAATTAATACAAATCAC
*
24858388 CATATTAATACAAATCAC
1 CAAATTAATACAAATCAC
24858406 CAAATTAA
1 CAAATTAA
24858414 CACAGTTGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (18 bp):
CAAATTAATACAAATCAC
Found at i:24860124 original size:32 final size:31
Alignment explanation
Indices: 24860059--24860125 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
24860049 ACCTAAAATT
* *
24860059 ATTAATTCTAATTATTCTAATATTTTATATA
1 ATTAATTCTAATTATTCTAATATATAATATA
*
24860090 ATTAATTCTCAATTATT-TAATTATATAATCTA
1 ATTAATTCT-AATTATTCTAA-TATATAATATA
24860122 ATTA
1 ATTA
24860126 TGATTTCTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 12 0.39
32 19 0.61
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (31 bp):
ATTAATTCTAATTATTCTAATATATAATATA
Found at i:24860606 original size:15 final size:15
Alignment explanation
Indices: 24860582--24860617 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
24860572 TAAGTTATTT
* *
24860582 TATTTAATTATTTAA
1 TATTTTATTATTCAA
24860597 TATTTTATTATTCAA
1 TATTTTATTATTCAA
24860612 TATTTT
1 TATTTT
24860618 CATTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTTTATTATTCAA
Found at i:24861000 original size:21 final size:23
Alignment explanation
Indices: 24860962--24861014 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
24860952 TTTTACTCAC
* *
24860962 TTAATTA-TTATTATTTTT-AAT
1 TTAATTATTTAATATTTTTGAAA
24860983 TTAATTATTTAAT-TTTTTGAAA
1 TTAATTATTTAATATTTTTGAAA
*
24861005 TTAAATATTT
1 TTAATTATTT
24861015 TAGTCAACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
TTAATTATTTAATATTTTTGAAA
Found at i:24863923 original size:13 final size:13
Alignment explanation
Indices: 24863905--24863933 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
24863895 CTATCAGCTC
24863905 ACCACCCCAAATA
1 ACCACCCCAAATA
24863918 ACCACCCCAAATA
1 ACCACCCCAAATA
24863931 ACC
1 ACC
24863934 CATTTACAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.48, G:0.00, T:0.07
Consensus pattern (13 bp):
ACCACCCCAAATA
Found at i:24864363 original size:13 final size:14
Alignment explanation
Indices: 24864336--24864365 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
24864326 TTCAAGGTGA
24864336 TTTTTATTTCTATT
1 TTTTTATTTCTATT
24864350 TTTTTATTTC-ATT
1 TTTTTATTTCTATT
24864363 TTT
1 TTT
24864366 AAACCTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTATTTCTATT
Found at i:24865022 original size:22 final size:21
Alignment explanation
Indices: 24864974--24865022 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
24864964 TCATTTTCTG
*
24864974 TTATTTATTAATTTTAATATT
1 TTATTTATTAATTTAAATATT
24864995 TATATTTATT-ATATTAAATATAT
1 T-TATTTATTAAT-TTAAATAT-T
24865018 TTATT
1 TTATT
24865023 ATATGTCTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.12
22 19 0.79
23 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATTTATTAATTTAAATATT
Found at i:24865163 original size:27 final size:25
Alignment explanation
Indices: 24865084--24865166 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 25
24865074 ATATAGTGTA
* *
24865084 TTATATATATAATTTTATATATCAT-
1 TTATATATAT-ATTTTAAATATTATG
* * *
24865109 ATATATATGTGTTTTAAATATTATG
1 TTATATATATATTTTAAATATTATG
*
24865134 TTATATATATATTTTCAATATTATTAG
1 TTATATATATATTTTAAATATTA-T-G
24865161 TTATAT
1 TTATAT
24865167 TTTCTTATAA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 11 0.24
25 27 0.59
26 1 0.02
27 7 0.15
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.55
Consensus pattern (25 bp):
TTATATATATATTTTAAATATTATG
Found at i:24865473 original size:24 final size:24
Alignment explanation
Indices: 24865421--24865488 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
24865411 TCGTACTATT
* *
24865421 CATATATTTTTATGTTATTTCGTA
1 CATATATCTTTATATTATTTCGTA
24865445 CATATATCTTTATATTATTT-GTTA
1 CATATATCTTTATATTATTTCG-TA
* *
24865469 TATATTTCTTT-TATTATTTC
1 CATATATCTTTATATTATTTC
24865489 ATGTATATGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.24
24 29 0.76
ACGTcount: A:0.25, C:0.09, G:0.04, T:0.62
Consensus pattern (24 bp):
CATATATCTTTATATTATTTCGTA
Found at i:24865495 original size:23 final size:24
Alignment explanation
Indices: 24865422--24865496 Score: 71
Period size: 24 Copynumber: 3.2 Consensus size: 24
24865412 CGTACTATTC
* * * *
24865422 ATATATTTTTATGTTATTTCGTAC
1 ATATATCTTTATATTATTTCATAT
**
24865446 ATATATCTTTATATTATTTGTTAT
1 ATATATCTTTATATTATTTCATAT
* *
24865470 ATATTTCTTT-TATTATTTCATGT
1 ATATATCTTTATATTATTTCATAT
24865493 ATAT
1 ATAT
24865497 GTTGTTAAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
23 14 0.33
24 28 0.67
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (24 bp):
ATATATCTTTATATTATTTCATAT
Found at i:24878000 original size:74 final size:75
Alignment explanation
Indices: 24877878--24878042 Score: 233
Period size: 74 Copynumber: 2.2 Consensus size: 75
24877868 TCAATTTCTG
* * * * *
24877878 TTCAATTTATATTTTTCAAAAAAATCAACTCATGTTACGAGAGGTGAGTTGGGCCTCGGGGCATG
1 TTCAATTTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGGCAAG
24877943 CTGAGGTATT
66 CTGAGGTATT
* * *
24877953 TTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGGGTAAG
1 TTCAATTTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGGCAAG
24878017 CTGAGGTATT
66 CTGAGGTATT
* *
24878027 TTCAATTCCTGTTTTT
1 TTCAATTTCTATTTTT
24878043 TTTAATGCAT
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
74 64 0.80
75 16 0.20
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (75 bp):
TTCAATTTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGGCAAG
CTGAGGTATT
Found at i:24878371 original size:90 final size:89
Alignment explanation
Indices: 24878149--24878462 Score: 359
Period size: 90 Copynumber: 3.5 Consensus size: 89
24878139 TTCTATTTTT
* * * * *
24878149 AATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCA-G-AACACGCTG
1 AATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACATGCTG
* * * *
24878212 AGGTAATTTGAATTTCTGTTTCTC-
65 AGGTATTTTCAATTTATGTTTTTCA
* * *
24878236 AATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCATTGGCTCACATGC
1 AATTTCTGCTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG-TCACATGC
* * *
24878301 TGAGGTATTTTTAGTTTTTGTTTTTCA
63 TGAGGTATTTTCAATTTATGTTTTTCA
* *
24878328 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCG
1 AATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACATGCTG
*
24878393 AGGTATTTTCAAATTATG-TTTTCA
65 AGGTATTTTCAATTTATGTTTTTCA
* * *
24878417 AA-TTATGTTTTTCAAAAATCAACTCAGATTGCGAGAGGTGAGTTGA
1 AATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
24878463 ACCTTTTAAT
Statistics
Matches: 196, Mismatches: 24, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
87 13 0.07
88 42 0.21
89 42 0.21
90 58 0.30
91 28 0.14
92 13 0.07
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36
Consensus pattern (89 bp):
AATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTCACATGCTGA
GGTATTTTCAATTTATGTTTTTCA
Found at i:24878414 original size:13 final size:14
Alignment explanation
Indices: 24878398--24878432 Score: 63
Period size: 13 Copynumber: 2.6 Consensus size: 14
24878388 TGCCGAGGTA
24878398 TTTTCAAATTATG-
1 TTTTCAAATTATGT
24878411 TTTTCAAATTATGT
1 TTTTCAAATTATGT
24878425 TTTTCAAA
1 TTTTCAAA
24878433 AATCAACTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.54
Consensus pattern (14 bp):
TTTTCAAATTATGT
Found at i:24878489 original size:14 final size:14
Alignment explanation
Indices: 24878466--24878499 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
24878456 GAGTTGAACC
*
24878466 TTTT-AATTTATGT
1 TTTTCAATTTATAT
24878479 TTTTCAATTTATAT
1 TTTTCAATTTATAT
24878493 TTTTCAA
1 TTTTCAA
24878500 AAAAAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:24878734 original size:44 final size:44
Alignment explanation
Indices: 24878686--24878830 Score: 200
Period size: 44 Copynumber: 3.3 Consensus size: 44
24878676 TAGATTTGGC
24878686 CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAGTTACAAATCTTGT
1 CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAGTTACAAATCTTGT
* *
24878730 CTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTTGCAAATCTTGT
1 CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAGTTACAAATCTTGT
* * * * * *
24878774 CTCCCTGAAGTTGCAGTGGAGCTGATCAAGGATATCAAATCTTAT
1 CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAGTTA-CAAATCTTGT
*
24878819 CTTTCTGAAGTT
1 CTCTCTGAAGTT
24878831 ACAAGTGAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 69 0.78
45 19 0.22
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (44 bp):
CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAGTTACAAATCTTGT
Found at i:24878953 original size:88 final size:89
Alignment explanation
Indices: 24878810--24878984 Score: 244
Period size: 88 Copynumber: 2.0 Consensus size: 89
24878800 CAAGGATATC
* * ** * *
24878810 AAATCTTATCTTTCTGAAGTTACAAGTGAAGTGGATCGAAGCCACAAATCTCATATCCTTGAAGT
1 AAATCTTATCTTTATGAAGCTACAAGTGAAGCAGATCAAAGCCACAAATCTCATATCCTTAAAGT
*
24878875 TACATTAGAGAAGATTGAAGCTGT
66 TACATCAGAGAAGATTGAAGCTGT
* *
24878899 AAATCTTATCTTTATGAAGCTGCATG-GAAGCAGATCAAAGCCACAAATCTCATATCCTTAAAGT
1 AAATCTTATCTTTATGAAGCTACAAGTGAAGCAGATCAAAGCCACAAATCTCATATCCTTAAAGT
* *
24878963 TACATCGGAGTAGATTGAAGCT
66 TACATCAGAGAAGATTGAAGCT
24878985 ACAAGGCATA
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
88 53 0.71
89 22 0.29
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (89 bp):
AAATCTTATCTTTATGAAGCTACAAGTGAAGCAGATCAAAGCCACAAATCTCATATCCTTAAAGT
TACATCAGAGAAGATTGAAGCTGT
Found at i:24879709 original size:13 final size:14
Alignment explanation
Indices: 24879682--24879711 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
24879672 TTCAAGGTGA
24879682 TTTTTATTTCTATT
1 TTTTTATTTCTATT
24879696 TTTTTATTTC-ATT
1 TTTTTATTTCTATT
24879709 TTT
1 TTT
24879712 AAACCTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTATTTCTATT
Found at i:24881219 original size:35 final size:35
Alignment explanation
Indices: 24881175--24881341 Score: 210
Period size: 35 Copynumber: 4.6 Consensus size: 35
24881165 TCCTCATTGA
** *
24881175 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
24881210 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
24881250 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
24881285 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
24881320 AATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
24881342 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:24881258 original size:75 final size:72
Alignment explanation
Indices: 24881171--24881341 Score: 215
Period size: 75 Copynumber: 2.4 Consensus size: 72
24881161 GTTTTCCTCA
** * * **
24881171 TTGA-AATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 TTGATAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
24881234 TCAGTATGG
65 TCAGTAT-G
*
24881243 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 --TTGATAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
24881308 CTCAGTATG
64 CTCAGTATG
24881317 --GATAATACCATACCTACATTTCACA
1 TTGATAATACCATACCTACATTTCACA
24881342 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 25 0.28
74 8 0.09
75 55 0.62
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (72 bp):
TTGATAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATG
Found at i:24887485 original size:70 final size:69
Alignment explanation
Indices: 24887366--24887788 Score: 403
Period size: 71 Copynumber: 6.2 Consensus size: 69
24887356 GAGTTAAGCC
*
24887366 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
24887430 TGAGGTA
63 TGAGGTA
* * ** * *
24887437 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
24887502 AGGTA
65 AGGTA
* *
24887507 TTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
24887572 GAGGTA
64 GAGGTA
* * * ** * * *
24887578 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
24887634 ---A
66 GGTA
*** ** *
24887635 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
24887696 GGTA
66 GGTA
* * *
24887700 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
24887765 TGAGGTA
63 TGAGGTA
*
24887772 TTTTCAATTTCTGTTTT
1 TTTTCAATTTTTGTTTT
24887789 CAATTTACGT
Statistics
Matches: 285, Mismatches: 44, Indels: 47
0.76 0.12 0.12
Matches are distributed among these distances:
53 31 0.11
57 9 0.03
60 2 0.01
62 2 0.01
65 5 0.02
66 4 0.01
69 34 0.12
70 64 0.22
71 70 0.25
72 64 0.22
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
GGTA
Found at i:24887674 original size:122 final size:124
Alignment explanation
Indices: 24887508--24887754 Score: 392
Period size: 122 Copynumber: 2.0 Consensus size: 124
24887498 GTTGAGGTAT
24887508 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
24887573 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
24887629 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
24887694 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
24887754 T
1 T
24887755 CAGGTCACGC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
121 12 0.11
122 60 0.53
123 1 0.01
124 13 0.11
125 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:24887719 original size:263 final size:257
Alignment explanation
Indices: 24887199--24887791 Score: 1042
Period size: 263 Copynumber: 2.3 Consensus size: 257
24887189 TTTCAAGGAA
*
24887199 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
24887264 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
24887329 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
24887394 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
24887456 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
24887521 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
24887586 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
24887651 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
24887716 TTT
255 TTT
* * * * * *
24887719 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
24887784 GTTTTCAA
64 GTTTTCAA
24887792 TTTACGTTGT
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 120 0.38
260 2 0.01
262 4 0.01
263 131 0.41
265 63 0.20
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:24887750 original size:72 final size:71
Alignment explanation
Indices: 24887629--24887794 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
24887619 GAGTTAAGCC
** * *
24887629 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
24887693 TGAGGTA
65 TGAGGTA
*
24887700 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
24887765 TGAGGTA
65 TGAGGTA
* *
24887772 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
24887795 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:24888125 original size:74 final size:76
Alignment explanation
Indices: 24888019--24888163 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
24888009 TTTTTGCCTT
*
24888019 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
24888081 CAATTTCTGTTG
65 CAATTTCTGTTG
* * *
24888093 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
24888158 AATTTC
66 AATTTC
24888164 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTGTTG
Found at i:24888131 original size:165 final size:166
Alignment explanation
Indices: 24887859--24888335 Score: 721
Period size: 165 Copynumber: 2.9 Consensus size: 166
24887849 CTACTTTTTC
24887859 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * *
24887924 GTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
* *
24887989 TTTCAATTTCCGTTTTTCAATTTTTGCCTTTC-AAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
24888024 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
24888089 GTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
24888154 TTTCAATTTCCATTTTTCAATTTCTGCATTTCAAAAAAAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTC----AAAA
*
24888194 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * ** * *
24888259 GTTTTC--AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
24888320 TTTCAATTTCTGTTTT
131 TTTCAATTTCCGTTTT
24888336 CAAAAAATCA
Statistics
Matches: 287, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
165 154 0.54
166 27 0.09
168 34 0.12
170 72 0.25
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (166 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
Found at i:24888274 original size:72 final size:73
Alignment explanation
Indices: 24888192--24888698 Score: 406
Period size: 72 Copynumber: 6.5 Consensus size: 73
24888182 TTTCAAAAAA
*
24888192 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
24888257 CTGTTTTC
66 CTGTTTTC
* * ** ** *
24888265 -AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
24888329 CTGTTTTC
66 CTGTTTTC
* * * ** *
24888337 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
24888402 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
24888413 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
24888478 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
24888492 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCA
**
24888556 AAATCTGTTTTTC
62 ATTTCTG-TTTTC
* * **
24888569 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGA
*
24888634 GCTATTTTCAATTTCTGTTTTTTTTTC
52 GGTATTTTCAATTTCTG-----TTTTC
24888661 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
24888699 TTTTTAATTT
Statistics
Matches: 348, Mismatches: 53, Indels: 57
0.76 0.12 0.12
Matches are distributed among these distances:
72 64 0.18
73 33 0.09
75 21 0.06
76 4 0.01
77 57 0.16
78 5 0.01
79 64 0.18
80 1 0.00
81 5 0.01
82 29 0.08
86 2 0.01
88 54 0.16
89 1 0.00
91 2 0.01
92 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:24888515 original size:79 final size:76
Alignment explanation
Indices: 24888191--24888908 Score: 427
Period size: 88 Copynumber: 9.0 Consensus size: 76
24888181 ATTTCAAAAA
** *
24888191 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
24888254 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * *
24888265 --AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
24888326 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
24888337 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
24888401 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
24888413 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
24888478 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
24888492 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
**
24888556 AAATCTGTTTTTC
65 ATTTCTG-TTTTC
* ** * **
24888569 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
24888634 GCTATTTTCAATTTCTGTTTTTTTTTC
55 GGTATTTTCAATTTCTG-----TTTTC
* * * * * *
24888661 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
24888725 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTG-TTTTC
* **
24888748 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
24888809 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
24888823 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
24888888 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
24888909 TAATGTCTGT
Statistics
Matches: 503, Mismatches: 84, Indels: 101
0.73 0.12 0.15
Matches are distributed among these distances:
72 64 0.13
73 31 0.06
75 36 0.07
76 5 0.01
77 63 0.13
78 7 0.01
79 64 0.13
80 2 0.00
81 7 0.01
82 30 0.06
83 1 0.00
84 31 0.06
85 7 0.01
86 1 0.00
87 11 0.02
88 120 0.24
89 3 0.01
90 1 0.00
91 13 0.03
92 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:24888569 original size:14 final size:13
Alignment explanation
Indices: 24888550--24888585 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
24888540 TGTCGAGGTA
24888550 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
24888563 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
24888577 TTTTCAAAA
1 TTTTCAAAA
24888586 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:24888716 original size:30 final size:30
Alignment explanation
Indices: 24888680--24888741 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
24888670 CAACTCATAT
24888680 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
24888710 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
24888740 TG
1 TG
24888742 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:24888842 original size:254 final size:248
Alignment explanation
Indices: 24888331--24888909 Score: 762
Period size: 254 Copynumber: 2.3 Consensus size: 248
24888321 TTCAATTTCT
* * *
24888331 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
24888396 TTCAATTTC----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
66 TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
* *
24888457 CACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGA
131 CACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGA
* ** * * * **
24888522 GTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCT
195 GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
* *
24888576 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
24888640 TTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
66 TTCAATTTCTGTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCA
* * * * * * *
24888705 -ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGC
128 GA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGC
*
24888767 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
24888830 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
24888894 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
24888910 AATGTCTGTT
Statistics
Matches: 291, Mismatches: 28, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
248 13 0.04
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 5 0.02
254 146 0.50
255 5 0.02
256 13 0.04
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (248 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
CACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAG
TTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
Found at i:24889572 original size:13 final size:13
Alignment explanation
Indices: 24889556--24889589 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
24889546 AACCTAACCC
24889556 AAAAAAAAACAAA
1 AAAAAAAAACAAA
*
24889569 AAAAAAAAAGAAA
1 AAAAAAAAACAAA
24889582 AAGAAAAA
1 AA-AAAAA
24889590 CCTACCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAAACAAA
Found at i:24889601 original size:13 final size:15
Alignment explanation
Indices: 24889585--24889617 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
24889575 AAAGAAAAAG
24889585 AAAAACCT-A-CCAA
1 AAAAACCTAACCCAA
24889598 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
24889613 AAAAA
1 AAAAA
24889618 AAAAAGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 1 0.06
15 9 0.50
ACGTcount: A:0.67, C:0.27, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:24890439 original size:14 final size:14
Alignment explanation
Indices: 24890420--24890452 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
24890410 ATCATATGTG
24890420 TATATTGTATATAT-
1 TATATT-TATATATA
24890434 TATATTTATATATA
1 TATATTTATATATA
24890448 TATAT
1 TATAT
24890453 ATATTCTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TATATTTATATATA
Found at i:24891990 original size:25 final size:25
Alignment explanation
Indices: 24891953--24892032 Score: 108
Period size: 26 Copynumber: 3.1 Consensus size: 25
24891943 AAAAAAACTA
24891953 TTTTATTATTATTTTTATTTTAAGTT
1 TTTTATTA-TATTTTTATTTTAAGTT
* *
24891979 TTTTCTTATATTATTTATTTTAAATT
1 TTTTATTATATT-TTTATTTTAAGTT
24892005 GTTTTATTAT-TTTTTATTTTAAGTT
1 -TTTTATTATATTTTTATTTTAAGTT
24892030 TTT
1 TTT
24892033 CACGTATTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.06
25 16 0.33
26 21 0.44
27 8 0.17
ACGTcount: A:0.23, C:0.01, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTTATTATATTTTTATTTTAAGTT
Found at i:24892033 original size:50 final size:50
Alignment explanation
Indices: 24891958--24892052 Score: 138
Period size: 50 Copynumber: 1.9 Consensus size: 50
24891948 AACTATTTTA
** *
24891958 TTATTATTTTTATTTTAAGTTTTTTCTTATATTATTTATTTTAAATTGTT
1 TTATTATTTTTATTTTAAGTTTTTTCACATATTATGTATTTTAAATTGTT
*
24892008 TTATTATTTTTTATTTTAAG-TTTTTCACGTATTATGTATTTTAAA
1 TTATTA-TTTTTATTTTAAGTTTTTTCACATATTATGTATTTTAAA
24892053 CTATTATCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 27 0.68
51 13 0.32
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.66
Consensus pattern (50 bp):
TTATTATTTTTATTTTAAGTTTTTTCACATATTATGTATTTTAAATTGTT
Found at i:24892040 original size:25 final size:24
Alignment explanation
Indices: 24891964--24892051 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 24
24891954 TTTATTATTA
*
24891964 TTTTTATTTTAAGTTTTTTCTTAT
1 TTTTTATTTTAAGTTTTTACTTAT
*
24891988 ATTATTTATTTTAAATTGTTTTA-TTAT
1 -TT-TTTATTTT-AAGT-TTTTACTTAT
*
24892015 TTTTTATTTTAAGTTTTTCACGTAT
1 TTTTTATTTTAAGTTTTT-ACTTAT
* *
24892040 TATGTATTTTAA
1 TTTTTATTTTAA
24892052 ACTATTATCC
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
23 4 0.08
24 4 0.08
25 23 0.44
26 10 0.19
27 7 0.13
28 4 0.08
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.67
Consensus pattern (24 bp):
TTTTTATTTTAAGTTTTTACTTAT
Found at i:24892131 original size:31 final size:31
Alignment explanation
Indices: 24892096--24892159 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
24892086 TATTTTAAAA
* *
24892096 TTTTTATATATAT-TATTTATTTTGAATTATT
1 TTTTTATATATATCT-TTTATTTTAAACTATT
24892127 TTTTTATATATATCTTTTATTTTAAACTATT
1 TTTTTATATATATCTTTTATTTTAAACTATT
24892158 TT
1 TT
24892160 GTACATTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (31 bp):
TTTTTATATATATCTTTTATTTTAAACTATT
Found at i:24892134 original size:27 final size:27
Alignment explanation
Indices: 24892081--24892347 Score: 118
Period size: 26 Copynumber: 10.2 Consensus size: 27
24892071 ATTTTAAAGG
24892081 TTATTTATTTTAAAATTTTTATATATA
1 TTATTTATTTTAAAATTTTTATATATA
*
24892108 TTATTTATTTTGAATTATTTTTTTATATATA
1 TTATTTATTTT-AA--A-ATTTTTATATATA
* * * *
24892139 TCT-TTTATTTTAAACTATTT-TGTACA
1 T-TATTTATTTTAAAATTTTTATATATA
* * * *
24892165 TTATTTGTTTTAAATTTCTTTTTACATA
1 TTATTTATTTTAAAATT-TTTATATATA
* * *
24892193 TTATTTATCTT-AAACTCTT-T-TATA
1 TTATTTATTTTAAAATTTTTATATATA
* * * *
24892217 -T-GTTATTTTAAAGTGTCT-TATATA
1 TTATTTATTTTAAAATTTTTATATATA
* * *
24892241 TTATCTATTTT-AAATTGCTT-TGTATA
1 TTATTTATTTTAAAATT-TTTATATATA
*
24892267 TTATCTATTTT--AATTTGTT-TATATA
1 TTATTTATTTTAAAATTT-TTATATATA
* *
24892292 TTATTTATTTTAAAA-TGTT-T-TATG
1 TTATTTATTTTAAAATTTTTATATATA
* * *
24892316 GTATTTACTTT-AAATTTTTTTATATA
1 TTATTTATTTTAAAATTTTTATATATA
24892342 TTATTT
1 TTATTT
24892348 TGTTTCGTTT
Statistics
Matches: 180, Mismatches: 41, Indels: 39
0.69 0.16 0.15
Matches are distributed among these distances:
22 6 0.03
23 8 0.04
24 22 0.12
25 31 0.17
26 50 0.28
27 23 0.13
28 15 0.08
30 3 0.02
31 21 0.12
32 1 0.01
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (27 bp):
TTATTTATTTTAAAATTTTTATATATA
Found at i:24892223 original size:54 final size:55
Alignment explanation
Indices: 24892081--24892224 Score: 146
Period size: 54 Copynumber: 2.6 Consensus size: 55
24892071 ATTTTAAAGG
* * * * *
24892081 TTATTTATTTTAAAATTTTTATATATATTATTTATTTTGAATTATTTTTTTATATA
1 TTATTTATTTTAAACTATTT-TATATATTATTTATTTTAAATTATCTTTTTACATA
* * * *
24892137 TATCTTTTATTTTAAACTATTTTGTACATTATTTGTTTTAAATT-TCTTTTTACATA
1 T-T-ATTTATTTTAAACTATTTTATATATTATTTATTTTAAATTATCTTTTTACATA
* * *
24892193 TTATTTATCTTAAACTCTTTTATATGTTATTT
1 TTATTTATTTTAAACTATTTTATATATTATTT
24892225 TAAAGTGTCT
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
54 24 0.34
55 1 0.01
56 12 0.17
57 19 0.27
58 15 0.21
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.63
Consensus pattern (55 bp):
TTATTTATTTTAAACTATTTTATATATTATTTATTTTAAATTATCTTTTTACATA
Found at i:24892291 original size:25 final size:25
Alignment explanation
Indices: 24892220--24892345 Score: 128
Period size: 26 Copynumber: 5.0 Consensus size: 25
24892210 TTTTATATGT
*
24892220 TATTTTAAAGTGTCTTATATATTATC
1 TATTTTAAATTGT-TTATATATTATC
*
24892246 TATTTTAAATTGCTTTGTATATTATC
1 TATTTTAAATTG-TTTATATATTATC
* *
24892272 TATTTTAATTTGTTTATATATTATT
1 TATTTTAAATTGTTTATATATTATC
* ** *
24892297 TATTTTAAAATGTTT-TATGGTATT
1 TATTTTAAATTGTTTATATATTATC
* *
24892321 TACTTTAAATTTTTTTATATATTAT
1 TATTTTAAA-TTGTTTATATATTAT
24892346 TTTGTTTCGT
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
24 15 0.18
25 28 0.34
26 39 0.47
27 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.60
Consensus pattern (25 bp):
TATTTTAAATTGTTTATATATTATC
Found at i:24892346 original size:50 final size:47
Alignment explanation
Indices: 24892106--24892347 Score: 137
Period size: 50 Copynumber: 4.7 Consensus size: 47
24892096 TTTTTATATA
*
24892106 TATTATTTATTTTGAATTATTTTTTTATATATATCTTTTATTTTAAACTAT-TTT
1 TATTATTTA-TTT-AA--ATTTTTTTATATAT-T-ATTTATTTTAAA--ATGTTT
* * * * *
24892160 GTACATTATTTGTTTTAAATTTCTTTTTACATATTATTTATCTTAAACTCTTT
1 -T--ATTATTT-ATTTAAA-TT-TTTTTATATATTATTTATTTTAAAATGTTT
* * * * *
24892213 TA-TATGTTATTTTAAAGTGTCTTATATATTATCTATTTTAAATTGCTTTGT
1 TATTAT-TTA-TTTAAATTTTTTTATATATTATTTATTTTAAAATG--TT-T
* * *
24892264 ATATTATCTATTTTAATTTGTTTATATATTATTTATTTTAAAATGTTT
1 -TATTATTTATTTAAATTTTTTTATATATTATTTATTTTAAAATGTTT
24892312 TATGGTATTTACTTTAAATTTTTTTATATATTATTT
1 TAT--TATTTA-TTTAAATTTTTTTATATATTATTT
24892348 TGTTTCGTTT
Statistics
Matches: 146, Mismatches: 25, Indels: 37
0.70 0.12 0.18
Matches are distributed among these distances:
47 3 0.02
48 21 0.14
49 11 0.08
50 33 0.23
51 29 0.20
52 6 0.04
53 6 0.04
54 11 0.08
55 4 0.03
56 12 0.08
57 10 0.07
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (47 bp):
TATTATTTATTTAAATTTTTTTATATATTATTTATTTTAAAATGTTT
Found at i:24907298 original size:2 final size:2
Alignment explanation
Indices: 24907291--24907322 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
24907281 GTTTGTTAAT
24907291 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24907323 AAGTAAGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24914945 original size:13 final size:13
Alignment explanation
Indices: 24914927--24914974 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
24914917 TTCTTCCTTC
24914927 TCTTCTCTTCTCT
1 TCTTCTCTTCTCT
* *
24914940 TCTTCTATTTTCT
1 TCTTCTCTTCTCT
* *
24914953 TTTTCTCATTCTTT
1 TCTTCTC-TTCTCT
24914967 TCTTCTCT
1 TCTTCTCT
24914975 AGCCGAAACA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
13 17 0.63
14 10 0.37
ACGTcount: A:0.04, C:0.29, G:0.00, T:0.67
Consensus pattern (13 bp):
TCTTCTCTTCTCT
Found at i:24916472 original size:46 final size:45
Alignment explanation
Indices: 24916400--24916575 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
24916390 TATTTGGGCA
24916400 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
24916446 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
24916493 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
24916539 CCCGAGCTCGATGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24916576 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:24916555 original size:93 final size:93
Alignment explanation
Indices: 24916396--24916567 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
24916386 AGGATATTTG
* * *
24916396 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGATGAG
*
24916461 TTGAGTTCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
24916489 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGATGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGATGAG
24916554 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
24916568 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGATGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:24923253 original size:20 final size:20
Alignment explanation
Indices: 24923210--24923255 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
24923200 ACTGCTTTGT
*
24923210 TATGGG-CCAATTGTATTGA
1 TATGGGCCCAATTGTATTAA
* *
24923229 GATGGGCCCAATTGTGTTAA
1 TATGGGCCCAATTGTATTAA
24923249 TATGGGC
1 TATGGGC
24923256 AAGGCCCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (20 bp):
TATGGGCCCAATTGTATTAA
Found at i:24928699 original size:19 final size:20
Alignment explanation
Indices: 24928672--24928718 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 20
24928662 CAACTACGCC
*
24928672 AACAAAAGCTCG-AAAGCTG
1 AACAGAAGCTCGAAAAGCTG
24928691 AACAGAAGCTCGTAAAAGCTG
1 AACAGAAGCTCG-AAAAGCTG
24928712 AACAGAA
1 AACAGAA
24928719 AGTAAAACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 11 0.44
21 14 0.56
ACGTcount: A:0.49, C:0.19, G:0.21, T:0.11
Consensus pattern (20 bp):
AACAGAAGCTCGAAAAGCTG
Found at i:24933788 original size:25 final size:25
Alignment explanation
Indices: 24933760--24933811 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
24933750 ATCAAGTGAG
24933760 TATTTTTTATTTCAAAATATTACAT
1 TATTTTTTATTTCAAAATATTACAT
*
24933785 TATTTTTTATTTCAAAATGTTACAT
1 TATTTTTTATTTCAAAATATTACAT
24933810 TA
1 TA
24933812 ATAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.56
Consensus pattern (25 bp):
TATTTTTTATTTCAAAATATTACAT
Found at i:24942385 original size:23 final size:23
Alignment explanation
Indices: 24942323--24942386 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
24942313 TCAGAATTTT
*
24942323 TCATAACATATAACATATCGAAA
1 TCATATCATATAACATATCGAAA
* *
24942346 TCATATTATTTAACATATC-AAA
1 TCATATCATATAACATATCGAAA
*
24942368 GTCATATCATATATCATAT
1 -TCATATCATATAACATAT
24942387 AACATATCAG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 3 0.09
23 31 0.91
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.36
Consensus pattern (23 bp):
TCATATCATATAACATATCGAAA
Found at i:24944333 original size:17 final size:17
Alignment explanation
Indices: 24944288--24944335 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
24944278 GAGAGGAAAG
*
24944288 AAAGAATAAAAAATAAA
1 AAAGAATAAAAATTAAA
* *
24944305 AGAGGAA-CAAAATTAAA
1 A-AAGAATAAAAATTAAA
24944322 AAAGAATAAAAATT
1 AAAGAATAAAAATT
24944336 TGCGAGTGAT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
16 4 0.17
17 16 0.67
18 4 0.17
ACGTcount: A:0.73, C:0.02, G:0.10, T:0.15
Consensus pattern (17 bp):
AAAGAATAAAAATTAAA
Found at i:24948922 original size:22 final size:22
Alignment explanation
Indices: 24948896--24948939 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
24948886 AGTGAGAATT
24948896 TTTAA-AATGAGAATCAAAATAA
1 TTTAACAATGA-AATCAAAATAA
* *
24948918 TTTAACTATTAAATCAAAATAA
1 TTTAACAATGAAATCAAAATAA
24948940 ATAGTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.32
Consensus pattern (22 bp):
TTTAACAATGAAATCAAAATAA
Done.