Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 78 of 335
Found at i:25990454 original size:40 final size:40
Alignment explanation
Indices: 25990346--25990555 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
25990336 CGGGATTTAA
* * * * *
25990346 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
25990386 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
25990426 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
25990466 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
25990506 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
25990546 CCGGATATAT
1 CCGGATATAT
25990556 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:25992963 original size:79 final size:79
Alignment explanation
Indices: 25992827--25992991 Score: 260
Period size: 79 Copynumber: 2.1 Consensus size: 79
25992817 CATGAATTTT
* * *
25992827 TCATCTTTTCAATTTAGTCCCTAAATCATGATTTTATCAAAATTCCCTTAACAAAAGTTGTTTAT
1 TCATTTTTTCAATTTAGCCCCTAAATCATGATTTCATCAAAATTCCCTTAACAAAAGTTGTTTAT
*
25992892 ATATCAACAACTT-
66 ATATCAAAAACTTC
*
25992905 TCCATTTTTTCAATTTAGCCCCTAAATCATGATTTCATCAAAATTTCCTTAACAAAAGTTGTTTA
1 T-CATTTTTTCAATTTAGCCCCTAAATCATGATTTCATCAAAATTCCCTTAACAAAAGTTGTTTA
*
25992970 TTTATCAAAAACTTC
65 TATATCAAAAACTTC
25992985 TCATTTT
1 TCATTTT
25992992 CTACCATAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
78 1 0.01
79 77 0.97
80 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.42
Consensus pattern (79 bp):
TCATTTTTTCAATTTAGCCCCTAAATCATGATTTCATCAAAATTCCCTTAACAAAAGTTGTTTAT
ATATCAAAAACTTC
Found at i:26000047 original size:2 final size:2
Alignment explanation
Indices: 26000040--26000067 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26000030 TGGATAGGGG
26000040 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26000068 TACCCACACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:26002369 original size:9 final size:9
Alignment explanation
Indices: 26002344--26002376 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
26002334 TGTTATTAAA
26002344 GGTTAAAAT
1 GGTTAAAAT
26002353 GG-TAAAAT
1 GGTTAAAAT
26002361 GGTTAAAAT
1 GGTTAAAAT
26002370 GGCTTAA
1 GG-TTAA
26002377 TTAACTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 10 0.45
10 4 0.18
ACGTcount: A:0.42, C:0.03, G:0.24, T:0.30
Consensus pattern (9 bp):
GGTTAAAAT
Found at i:26004810 original size:47 final size:47
Alignment explanation
Indices: 26004701--26004811 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
26004691 TCCGGATAAG
* *
26004701 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
26004748 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
26004795 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
26004812 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:26005584 original size:4 final size:4
Alignment explanation
Indices: 26005575--26005601 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
26005565 CCCTTTTCTA
26005575 TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT
26005602 ATCACGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:26019376 original size:47 final size:47
Alignment explanation
Indices: 26019267--26019378 Score: 138
Period size: 47 Copynumber: 2.4 Consensus size: 47
26019257 CCGGGATAAG
* *
26019267 CACATAGTGCTTCATCGAAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGAAACAAATCCGGAACTTTAACAGTATAGTA
* * * *
26019314 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGAAACAAATCCGGAACTTTAACAGTA-TAGTA
26019361 CACATAGTG-TCTCATCGA
1 CACATAGTGCT-TCATCGA
26019379 CTCAATGTCG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGAAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:26020150 original size:4 final size:4
Alignment explanation
Indices: 26020141--26020169 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
26020131 CCCTTTTCTA
26020141 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
26020170 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:26021072 original size:48 final size:48
Alignment explanation
Indices: 26020931--26021072 Score: 194
Period size: 48 Copynumber: 3.0 Consensus size: 48
26020921 TACTTAGGAG
* * * * *
26020931 TCTCGCACCCTAAGTGCTAATATCATAGCCCGAAGCCAACTCAATAAA
1 TCTCACACCCGAAGTGCTAATATCATGGCCTGAAGCCAACTCAATGAA
* * *
26020979 TCTCACACCTGAAGTGCCAATATCATGGCCTGAAGCGAACTCAATGAA
1 TCTCACACCCGAAGTGCTAATATCATGGCCTGAAGCCAACTCAATGAA
* *
26021027 TCTCACGCCCGAAGTGCTAATATCATGGCCTAAAGCCAACTCAATG
1 TCTCACACCCGAAGTGCTAATATCATGGCCTGAAGCCAACTCAATG
26021073 TAACCCCTAA
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 81 1.00
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (48 bp):
TCTCACACCCGAAGTGCTAATATCATGGCCTGAAGCCAACTCAATGAA
Found at i:26022761 original size:24 final size:24
Alignment explanation
Indices: 26022729--26022868 Score: 102
Period size: 24 Copynumber: 5.6 Consensus size: 24
26022719 CCATATAATA
*
26022729 GGAAGCTCATAACAGCCATAATCG
1 GGAAGCTCATAAGAGCCATAATCG
* *
26022753 GGAAGCTCATAAAAGCCATTATCG
1 GGAAGCTCATAAGAGCCATAATCG
* * *
26022777 GGTAGCTTCA-GAGAGTCATTAATCG
1 GGAAGC-TCATAAGAGCCA-TAATCG
* * **
26022802 GGAAGCTCATGAAATAGCCTTTAATTA
1 GGAAGCTCAT--AAGAGCC-ATAATCG
** *
26022829 GGAAGCTCCGAAGATCCATATATCG
1 GGAAGCTCATAAGAGCCATA-ATCG
26022854 GGAAGCTCATAAGAG
1 GGAAGCTCATAAGAG
26022869 TTGTTGTGTG
Statistics
Matches: 85, Mismatches: 24, Indels: 13
0.70 0.20 0.11
Matches are distributed among these distances:
24 37 0.44
25 32 0.38
27 16 0.19
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCG
Found at i:26022948 original size:24 final size:25
Alignment explanation
Indices: 26022920--26022991 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
26022910 ATATGCTCAA
* *
26022920 AAGAGCTAT-TAACGGGAAGCTCGT
1 AAGAGCCATATAACAGGAAGCTCGT
* *
26022944 TAGAGCCATATATCAGGAAGCTCGT
1 AAGAGCCATATAACAGGAAGCTCGT
*
26022969 AAGAGCCATATATCAGGAAGCTC
1 AAGAGCCATATAACAGGAAGCTC
26022992 AAGAGAGCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 7 0.17
25 35 0.83
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (25 bp):
AAGAGCCATATAACAGGAAGCTCGT
Found at i:26022965 original size:25 final size:25
Alignment explanation
Indices: 26022934--26023007 Score: 107
Period size: 25 Copynumber: 3.0 Consensus size: 25
26022924 GCTATTAACG
*
26022934 GGAAGCTCGTTAGAGCCATATATCA
1 GGAAGCTCGTAAGAGCCATATATCA
26022959 GGAAGCTCGTAAGAGCCATATATCA
1 GGAAGCTCGTAAGAGCCATATATCA
*
26022984 GGAAGCTC-AAGAGAGCCA-ATATCA
1 GGAAGCTCGTA-AGAGCCATATATCA
26023008 AGATGCTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
24 7 0.15
25 39 0.85
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (25 bp):
GGAAGCTCGTAAGAGCCATATATCA
Found at i:26023021 original size:24 final size:24
Alignment explanation
Indices: 26022945--26023028 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 24
26022935 GAAGCTCGTT
* *
26022945 AGAGCCATATATCAGGAAGCTCGTA-
1 AGAGCCA-ATATCAAGAAGCTC-AAG
*
26022970 AGAGCCATATATCAGGAAGCTCAAG
1 AGAGCCA-ATATCAAGAAGCTCAAG
* * *
26022995 AGAGCCAATATCAAGATGCTTATG
1 AGAGCCAATATCAAGAAGCTCAAG
*
26023019 AGAGCTAATA
1 AGAGCCAATA
26023029 ATGGGACGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
24 23 0.44
25 29 0.56
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (24 bp):
AGAGCCAATATCAAGAAGCTCAAG
Found at i:26027351 original size:22 final size:22
Alignment explanation
Indices: 26027323--26027367 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
26027313 CGTTGCAGAG
26027323 TATGAAGTATTCTAAGTAAAAA
1 TATGAAGTATTCTAAGTAAAAA
26027345 TATGAAGTATTCTAAGTAAAAA
1 TATGAAGTATTCTAAGTAAAAA
26027367 T
1 T
26027368 TGGGTGTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.04, G:0.13, T:0.33
Consensus pattern (22 bp):
TATGAAGTATTCTAAGTAAAAA
Found at i:26029111 original size:26 final size:25
Alignment explanation
Indices: 26029072--26029127 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
26029062 AATTTAATTA
*
26029072 AATTTGATTTTTATAATTTAAATTTT
1 AATTTGATTCTTATAA-TTAAATTTT
* *
26029098 TATTTTATTCTTATAATTAAATTTT
1 AATTTGATTCTTATAATTAAATTTT
26029123 AATTT
1 AATTT
26029128 AAAAATATCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
AATTTGATTCTTATAATTAAATTTT
Found at i:26029178 original size:35 final size:37
Alignment explanation
Indices: 26029138--26029213 Score: 93
Period size: 39 Copynumber: 2.1 Consensus size: 37
26029128 AAAAATATCA
26029138 CATATTAAAAAAT-AATTGGT-TGATTTTTTTAACTG
1 CATATTAAAAAATGAATTGGTATGATTTTTTTAACTG
* * *
26029173 CATATTACAAAATGATTTGTTAAATGATTTTTTTAACTG
1 CATATTAAAAAATGAATTGGT--ATGATTTTTTTAACTG
26029212 CA
1 CA
26029214 AAGATAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 12 0.35
36 5 0.15
39 17 0.50
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.45
Consensus pattern (37 bp):
CATATTAAAAAATGAATTGGTATGATTTTTTTAACTG
Found at i:26030486 original size:25 final size:26
Alignment explanation
Indices: 26030458--26030508 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26030448 CTTATTTCAT
*
26030458 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
26030483 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
26030509 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:26030500 original size:26 final size:24
Alignment explanation
Indices: 26030470--26030518 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
26030460 AATAAAAAAT
*
26030470 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
26030496 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
26030519 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:26037578 original size:57 final size:57
Alignment explanation
Indices: 26037491--26037605 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
26037481 AATTGAAGTA
*
26037491 AAAAAAAAATGTCAGGACCAGCTGAAGAGATGTCAACATCTCTTGTTTTTTATGCCT
1 AAAAAAAAATGTCAGGACCAGCTGAAGAGATGTCAACATCTCTCGTTTTTTATGCCT
26037548 AAAAAAAAATGTCAGGACCAGCTGAAGAGATGTCAACATCTCTCGTTTTTTATGCCT
1 AAAAAAAAATGTCAGGACCAGCTGAAGAGATGTCAACATCTCTCGTTTTTTATGCCT
26037605 A
1 A
26037606 GCCATTCACT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (57 bp):
AAAAAAAAATGTCAGGACCAGCTGAAGAGATGTCAACATCTCTCGTTTTTTATGCCT
Found at i:26048077 original size:46 final size:46
Alignment explanation
Indices: 26047933--26048243 Score: 224
Period size: 46 Copynumber: 6.6 Consensus size: 46
26047923 TTTGTGCGCT
* *
26047933 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * * *
26047979 AGTATAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
26048027 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* **
26048073 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGAT--GTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * ** * * *
26048117 AGTGTAAGACCATGTCTGGGACATGGCGTCCGCCTCGATTTTAATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGAGAGCC
* * *
26048166 AGTGTAAGACCATGTTTGGGACATGGCATC-GACT--TGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-GA-GAGCC
* *
26048213 AGTGTAAGACCATGTCTAGGACGTGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
26048244 ACATTATACC
Statistics
Matches: 212, Mismatches: 38, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
44 10 0.05
45 17 0.08
46 68 0.32
47 60 0.28
48 26 0.12
49 31 0.15
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:26052877 original size:5 final size:5
Alignment explanation
Indices: 26052863--26052900 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
26052853 AATGTTTAAG
26052863 TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
26052901 AAAAGAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:26053876 original size:40 final size:40
Alignment explanation
Indices: 26053814--26053893 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
26053804 TGGGTGTCAA
** * * *
26053814 TTTACTTCGGTTTAGCCGATGAGACATTAGGTGTCAAATT
1 TTTACTTCGAATTAGCCAATGAGACACTAGGTGCCAAATT
*
26053854 TTTACTTCGAATTATCCAATGAGACACTAGGTGCCAAATT
1 TTTACTTCGAATTAGCCAATGAGACACTAGGTGCCAAATT
26053894 GGTATGTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (40 bp):
TTTACTTCGAATTAGCCAATGAGACACTAGGTGCCAAATT
Found at i:26058113 original size:25 final size:25
Alignment explanation
Indices: 26058080--26058132 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
26058070 ATTCTATTCA
26058080 AACTCTATTTTACATCAATAAAATT
1 AACTCTATTTTACATCAATAAAATT
*
26058105 AACTCTATTTTATATCAATAAAATT
1 AACTCTATTTTACATCAATAAAATT
26058130 AAC
1 AAC
26058133 ACAATTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (25 bp):
AACTCTATTTTACATCAATAAAATT
Found at i:26058139 original size:25 final size:25
Alignment explanation
Indices: 26058086--26058139 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
26058076 TTCAAACTCT
* *
26058086 ATTTTACATCAATAAAATTAACTCT
1 ATTTTACATCAATAAAATTAACACA
*
26058111 ATTTTATATCAATAAAATTAACACA
1 ATTTTACATCAATAAAATTAACACA
26058136 ATTT
1 ATTT
26058140 AAAAAGATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (25 bp):
ATTTTACATCAATAAAATTAACACA
Found at i:26059307 original size:60 final size:60
Alignment explanation
Indices: 26059243--26059361 Score: 186
Period size: 60 Copynumber: 2.0 Consensus size: 60
26059233 ATACTAAACT
* *
26059243 AAACACAACAATTTATAACATAA-TCTTAAATTAGTAATAAATTAATTTTAAAATAATTAC
1 AAACACAACAATTTATAACATAATTC-TAAATTACTAACAAATTAATTTTAAAATAATTAC
* *
26059303 AAACACAACAATTTATAACGTAATTCTAAATTACTAACAATTTAATTTTAAAATAATTA
1 AAACACAACAATTTATAACATAATTCTAAATTACTAACAAATTAATTTTAAAATAATTA
26059362 TAAAAAATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 52 0.96
61 2 0.04
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.35
Consensus pattern (60 bp):
AAACACAACAATTTATAACATAATTCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:26059444 original size:24 final size:26
Alignment explanation
Indices: 26059380--26059444 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 26
26059370 ATTTTTATAT
26059380 TTTTAATA-AAAATAA-AATAATAATA
1 TTTTAATATAAAA-AATAATAATAATA
*
26059405 TTTT-ATTTAAAAAATAA-AA-AATA
1 TTTTAATATAAAAAATAATAATAATA
26059428 TTTTAATATAAAAAATA
1 TTTTAATATAAAAAATA
26059445 TATTACGCCC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
23 8 0.23
24 17 0.49
25 10 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
TTTTAATATAAAAAATAATAATAATA
Found at i:26060003 original size:31 final size:31
Alignment explanation
Indices: 26059965--26060023 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
26059955 GCAAGCCTTC
26059965 AAGAAACACAATAGCACTTGAAATATGCTTA
1 AAGAAACACAATAGCACTTGAAATATGCTTA
26059996 AAGAAACACAATAGCACTTGAAATATGC
1 AAGAAACACAATAGCACTTGAAATATGC
26060024 ATTTGGTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.20
Consensus pattern (31 bp):
AAGAAACACAATAGCACTTGAAATATGCTTA
Found at i:26063749 original size:3 final size:3
Alignment explanation
Indices: 26063741--26063814 Score: 50
Period size: 3 Copynumber: 25.7 Consensus size: 3
26063731 GTAACAAAAT
* * * *
26063741 TAA TAA TAA -AA TAA TAAA TATA TAA TAT TCA -AA TAA TAA CAA CAA
1 TAA TAA TAA TAA TAA T-AA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
*
26063786 -AA TAA TAG TAA T-A TAA TAA TAA -AA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26063815 GCAAAACAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
2 9 0.16
3 42 0.74
4 6 0.11
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:26063755 original size:11 final size:11
Alignment explanation
Indices: 26063724--26063814 Score: 60
Period size: 11 Copynumber: 7.9 Consensus size: 11
26063714 CAAATGTTTC
*
26063724 TAAAATAGTAA
1 TAAAATAATAA
*
26063735 CAAAATTAATAA
1 TAAAA-TAATAA
26063747 TAAAATAATAA
1 TAAAATAATAA
* *
26063758 -ATATATAATAT
1 TA-AAATAATAA
*
26063769 TCAAATAATAA
1 TAAAATAATAA
*
26063780 CAACAA-AATAA
1 TAA-AATAATAA
26063791 TAGTAATATAATAA
1 TA--AA-ATAATAA
26063805 TAAAATAATA
1 TAAAATAATA
26063815 GCAAAACAAT
Statistics
Matches: 61, Mismatches: 11, Indels: 16
0.69 0.12 0.18
Matches are distributed among these distances:
10 1 0.02
11 37 0.61
12 14 0.23
13 2 0.03
14 7 0.11
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:26065975 original size:11 final size:11
Alignment explanation
Indices: 26065959--26065983 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26065949 TGTATTTGTA
26065959 TTTTTTAATAT
1 TTTTTTAATAT
26065970 TTTTTTAATAT
1 TTTTTTAATAT
26065981 TTT
1 TTT
26065984 ACTATACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTTAATAT
Found at i:26066693 original size:133 final size:133
Alignment explanation
Indices: 26066546--26066787 Score: 448
Period size: 133 Copynumber: 1.8 Consensus size: 133
26066536 TATCAATACA
26066546 CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCAGTAATATCATTATTTATTGTGCCATAAA
1 CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCAGTAATATCATTATTTATTGTGCCATAAA
* *
26066611 TTTCACTCTCCCTGGATCTGATATTTCAAACCGGAACTTCTTCACTTTTGTGCTCCATTATCTGT
66 TTTCACACTCCCAGGATCTGATATTTCAAACCGGAACTTCTTCACTTTTGTGCTCCATTATCTGT
26066676 AGT
131 AGT
*
26066679 CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCTGTAATATCATTATTTATTGTGCCATAAA
1 CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCAGTAATATCATTATTTATTGTGCCATAAA
*
26066744 TTTCACACTCCCAGGATCTGATATTTCAAACCGGACCTTCTTCA
66 TTTCACACTCCCAGGATCTGATATTTCAAACCGGAACTTCTTCA
26066788 AGTCAACTAT
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
133 105 1.00
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (133 bp):
CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCAGTAATATCATTATTTATTGTGCCATAAA
TTTCACACTCCCAGGATCTGATATTTCAAACCGGAACTTCTTCACTTTTGTGCTCCATTATCTGT
AGT
Found at i:26070288 original size:15 final size:16
Alignment explanation
Indices: 26070256--26070290 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26070246 ATCATGTATA
26070256 TATTTTTTAAAATATT
1 TATTTTTTAAAATATT
*
26070272 TATTTTTTAATAT-TT
1 TATTTTTTAAAATATT
26070287 TATT
1 TATT
26070291 GAACTCTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TATTTTTTAAAATATT
Found at i:26071618 original size:25 final size:25
Alignment explanation
Indices: 26071572--26071620 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
26071562 CCAAATAAAA
*
26071572 TTTTTATAATAAATAACTTAAAATAT
1 TTTTTATAAAAAATAAC-TAAAATAT
26071598 TTTTTATAAAAAATGAA-TAAAAT
1 TTTTTATAAAAAAT-AACTAAAAT
26071621 TAGAACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 6 0.29
26 13 0.62
27 2 0.10
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (25 bp):
TTTTTATAAAAAATAACTAAAATAT
Found at i:26072437 original size:48 final size:48
Alignment explanation
Indices: 26072373--26072506 Score: 143
Period size: 48 Copynumber: 2.8 Consensus size: 48
26072363 AGTGATAATT
26072373 TTAAATTTTCAATACTATTCGATATTATT-TTAATTTATGCAAATT-TAA
1 TTAAATTTTCAATACTATTCGATATT-TTATTAATTTATGC-AATTATAA
* *
26072421 TTAAATTTGT-AATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAATTT-TCAATACTATTCGATATTTTATTAATTTATGCAATTATAA
* * * *
26072469 TTACAA-TTTCAATACTGTTTGAT-TTTTTTTCATTTATG
1 TTA-AATTTTCAATACTATTCGATATTTTATTAATTTATG
26072507 ATGTTTGCAT
Statistics
Matches: 77, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
47 21 0.27
48 53 0.69
49 3 0.04
ACGTcount: A:0.33, C:0.08, G:0.06, T:0.53
Consensus pattern (48 bp):
TTAAATTTTCAATACTATTCGATATTTTATTAATTTATGCAATTATAA
Found at i:26077829 original size:126 final size:126
Alignment explanation
Indices: 26077604--26077858 Score: 420
Period size: 126 Copynumber: 2.0 Consensus size: 126
26077594 TTATAGCCTC
* * *
26077604 ATTTTTCTATAAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGTTG
1 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTCCAGAAATTTTGTTG
* * *
26077669 ACAGTGTATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAATGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGAGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
*
26077730 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTCCAGAAATTTTGTTG
1 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTCCAGAAATTTTGTTG
* * *
26077795 ACAGTGCATCCTGTTTGAAGAGTTTTCGGCACTATTTGTTCAGAAATGTCTGCTCAGAATT
66 ACAGTGCATCCTGCTTGAAGAGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
26077856 ATT
1 ATT
26077859 CTTGCAGAAA
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 119 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTCCAGAAATTTTGTTG
ACAGTGCATCCTGCTTGAAGAGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
Found at i:26078330 original size:15 final size:15
Alignment explanation
Indices: 26078310--26078339 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26078300 TTAATTATTT
*
26078310 TCCTAAAACCCTAAA
1 TCCTAAAACACTAAA
26078325 TCCTAAAACACTAAA
1 TCCTAAAACACTAAA
26078340 CCCTTACAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (15 bp):
TCCTAAAACACTAAA
Found at i:26081235 original size:5 final size:5
Alignment explanation
Indices: 26081219--26081255 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
26081209 CTTTCTCCTT
26081219 AATAA TAATAA AATAA AATAA AATAA AATAA AATAA A
1 AATAA -AATAA AATAA AATAA AATAA AATAA AATAA A
26081256 GATTATTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:26083850 original size:15 final size:15
Alignment explanation
Indices: 26083830--26083871 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
26083820 GTAATCCTTG
26083830 TAAATATAAATAATT
1 TAAATATAAATAATT
26083845 TAAATATAAATAATT
1 TAAATATAAATAATT
26083860 TAAATATAAATA
1 TAAATATAAATA
26083872 TAATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TAAATATAAATAATT
Found at i:26084565 original size:21 final size:21
Alignment explanation
Indices: 26084539--26084581 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
26084529 TATAATTATG
26084539 TAATCAG-TTACCATCCATACC
1 TAATCAGATT-CCATCCATACC
26084560 TAATCAGATTCCATCCATACC
1 TAATCAGATTCCATCCATACC
26084581 T
1 T
26084582 TTTATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30
Consensus pattern (21 bp):
TAATCAGATTCCATCCATACC
Found at i:26089943 original size:24 final size:24
Alignment explanation
Indices: 26089911--26089959 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
26089901 GTTTGAATTA
*
26089911 TTTTTTTTTGAAAGTTTAGAAACT
1 TTTTTTTTTGAAAATTTAGAAACT
26089935 TTTTTTTTTGAAAATTTAGAAACT
1 TTTTTTTTTGAAAATTTAGAAACT
26089959 T
1 T
26089960 ACTCTCTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.55
Consensus pattern (24 bp):
TTTTTTTTTGAAAATTTAGAAACT
Found at i:26091382 original size:2 final size:2
Alignment explanation
Indices: 26091377--26091402 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26091367 ACACACACAC
26091377 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26091403 GTTCAACTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26092200 original size:25 final size:25
Alignment explanation
Indices: 26092037--26092205 Score: 80
Period size: 24 Copynumber: 6.8 Consensus size: 25
26092027 CTCTCTTTCA
* * **
26092037 AGCCATATAACAGGAAGCT-CATTG
1 AGCCATATATCGGGAAGCTCCAGAG
* * *
26092061 AGCCATGTAACGGGAAGCT-CATAAG
1 AGCCATATATCGGGAAGCTCCA-GAG
** *
26092086 AGCTGTA-ATCGGGAAGCTCAAGAG
1 AGCCATATATCGGGAAGCTCCAGAG
* * *
26092110 AGCCA-ATATTGGGAAACTCCGGAG
1 AGCCATATATCGGGAAGCTCCAGAG
* *
26092134 AGCCATTTATCGGGGAGCT-CATGAAAG
1 AGCCATATATCGGGAAGCTCCA-G--AG
* * *
26092161 AGCC-TTTAATTGGGAAGCTCCAGGG
1 AGCCATAT-ATCGGGAAGCTCCAGAG
*
26092186 AGCCATATATCGGGATGCTC
1 AGCCATATATCGGGAAGCTC
26092206 ATAAGAGCTA
Statistics
Matches: 108, Mismatches: 27, Indels: 19
0.70 0.18 0.12
Matches are distributed among these distances:
23 1 0.01
24 53 0.49
25 31 0.29
26 5 0.05
27 16 0.15
28 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (25 bp):
AGCCATATATCGGGAAGCTCCAGAG
Found at i:26094120 original size:14 final size:17
Alignment explanation
Indices: 26094088--26094125 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
26094078 GATTATAAAG
26094088 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
26094105 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
26094119 TATATTA
1 TATATTA
26094126 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:26095230 original size:22 final size:22
Alignment explanation
Indices: 26095189--26095230 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26095179 ATATTTGAGT
*
26095189 ATTGGTATTGAATTTAAATTGA
1 ATTGGTATTGAATTCAAATTGA
* *
26095211 ATTGGTATTTAATTCGAATT
1 ATTGGTATTGAATTCAAATT
26095231 TTAATTATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (22 bp):
ATTGGTATTGAATTCAAATTGA
Found at i:26097179 original size:2 final size:2
Alignment explanation
Indices: 26097172--26097202 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26097162 CGTATTAATT
26097172 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26097203 TAACTATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26097362 original size:18 final size:18
Alignment explanation
Indices: 26097328--26097605 Score: 150
Period size: 18 Copynumber: 15.1 Consensus size: 18
26097318 TCATTAACTC
* *
26097328 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAATTAT
*
26097345 TCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTAT
* * *
26097363 GCGGTAACAATCAAATAT
1 TCAGTAACAATCAATTAT
* * * *
26097381 TTAGTAATAACCAGTTAT
1 TCAGTAACAATCAATTAT
* *
26097399 TCAGTATCGATCAATTGATCGGTT
1 TCAGTAACAATCAATT-A-----T
*
26097423 ATCCAGTAACAGTCAATTAT
1 -T-CAGTAACAATCAATTAT
*
26097443 TCAGTAA-AATCAAATAT
1 TCAGTAACAATCAATTAT
* *
26097460 TCAGTAACAGTTAAGTTAT
1 TCAGTAACAATCAA-TTAT
* * *
26097479 TTAGTAATAGTC-ATTCAT
1 TCAGTAACAATCAATT-AT
* *
26097497 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATTAT
**
26097515 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAATTAT
* * *
26097533 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTAT
*
26097551 TCAGTAACAGTCTAA-TAT
1 TCAGTAACAATC-AATTAT
* *
26097569 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTAT
* *
26097587 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTAT
26097605 T
1 T
26097606 TTATACCTTT
Statistics
Matches: 195, Mismatches: 51, Indels: 29
0.71 0.19 0.11
Matches are distributed among these distances:
17 23 0.12
18 139 0.71
19 17 0.09
20 1 0.01
24 1 0.01
25 2 0.01
26 12 0.06
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (18 bp):
TCAGTAACAATCAATTAT
Found at i:26097795 original size:23 final size:23
Alignment explanation
Indices: 26097723--26097797 Score: 86
Period size: 21 Copynumber: 3.4 Consensus size: 23
26097713 CCTGATCAGT
** *
26097723 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
*
26097745 A-ACGAAACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
26097765 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
26097788 ATACGACACA
1 ATACGACACA
26097798 TAAAGTGCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.02
21 32 0.73
22 1 0.02
23 10 0.23
ACGTcount: A:0.40, C:0.25, G:0.21, T:0.13
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:26098205 original size:15 final size:15
Alignment explanation
Indices: 26098179--26098235 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
26098169 CATATATATT
26098179 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
26098193 ATATAATTTCAATCA
1 ATATAATTTCAATCA
* *
26098208 AAATAATTTTAATCA
1 ATATAATTTCAATCA
*
26098223 ATATAAATTCAAT
1 ATATAATTTCAAT
26098236 AAATTCATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 6 0.16
15 31 0.84
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.39
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:26099517 original size:5 final size:5
Alignment explanation
Indices: 26099509--26099533 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26099499 TTTATATAAT
26099509 ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA
26099534 TATTTTAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:26100148 original size:87 final size:85
Alignment explanation
Indices: 26099944--26100201 Score: 301
Period size: 87 Copynumber: 3.0 Consensus size: 85
26099934 CCTTGCTTTT
* * * *
26099944 CTTTTTTTTTGCACAT-AATTTGG-TATTTGAACTTTCAAAATACATAAAAAAAGGCCTTCAAAC
1 CTTTTTTTTTGCAC-TCAA-TTGGATACTTAAACTTTCAAAATACAT-CAAAAAGGCCCTCAAAC
** *
26100007 -TTTT-AAAAAATAATAATAAAGC
63 TTTTTCAAAAAA-AGCAATTAAGC
* * *
26100029 CCTTTTTTTTACACTCAATT-GAGTACTTAAACTTTTAAAATACATCAAAAAGGCCCTCAAACTT
1 CTTTTTTTTTGCACTCAATTGGA-TACTTAAACTTTCAAAATACATCAAAAAGGCCCTCAAACTT
26100093 TTTCAAAAAAAGCAATTAAGC
65 TTTCAAAAAAAGCAATTAAGC
* *
26100114 TCTTTTTTTTTTGCACTCAATTGGATACTTAAACTTTCAAAATGCATCAAAAAGGCCCTTAAACT
1 -C-TTTTTTTTTGCACTCAATTGGATACTTAAACTTTCAAAATACATCAAAAAGGCCCTCAAACT
*
26100179 TTTCCAAAAAAAGCAATTAAGC
64 TTTTCAAAAAAAGCAATTAAGC
26100201 C
1 C
26100202 ATTGATTTTT
Statistics
Matches: 149, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
83 1 0.01
84 18 0.12
85 45 0.30
86 8 0.05
87 75 0.50
88 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (85 bp):
CTTTTTTTTTGCACTCAATTGGATACTTAAACTTTCAAAATACATCAAAAAGGCCCTCAAACTTT
TTCAAAAAAAGCAATTAAGC
Found at i:26100481 original size:11 final size:11
Alignment explanation
Indices: 26100436--26100491 Score: 53
Period size: 11 Copynumber: 5.2 Consensus size: 11
26100426 AAATTTTATT
*
26100436 AAAAATTAGAA
1 AAAAATTATAA
*
26100447 AAGAAATT-TAT
1 AA-AAATTATAA
*
26100458 AAAAATCAT-A
1 AAAAATTATAA
26100468 AAAAATTATAA
1 AAAAATTATAA
*
26100479 AAAAATTGTAA
1 AAAAATTATAA
26100490 AA
1 AA
26100492 TTTTCTAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
10 12 0.33
11 19 0.53
12 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:26100481 original size:20 final size:19
Alignment explanation
Indices: 26100454--26100531 Score: 59
Period size: 19 Copynumber: 3.9 Consensus size: 19
26100444 GAAAAGAAAT
26100454 TTATAAAAATCATAAAAAA
1 TTATAAAAATCATAAAAAA
** **
26100473 TTATAAAAAAATTGTAAAATT
1 TTAT--AAAAATCATAAAAAA
* *
26100494 TTCTAAAAATCATTAAAAA
1 TTATAAAAATCATAAAAAA
26100513 TT-TATAAAATGCATAAAAA
1 TTATA-AAAAT-CATAAAAA
26100532 GGCCTTTTAA
Statistics
Matches: 44, Mismatches: 11, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
18 2 0.05
19 21 0.48
20 7 0.16
21 14 0.32
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (19 bp):
TTATAAAAATCATAAAAAA
Found at i:26100749 original size:18 final size:19
Alignment explanation
Indices: 26100717--26100893 Score: 76
Period size: 19 Copynumber: 9.3 Consensus size: 19
26100707 TCATAATTTC
26100717 TTTTTTACAA-TTTTTATA
1 TTTTTTACAATTTTTTATA
26100735 TTTCTTTAC-ATTTTTTATA
1 TTT-TTTACAATTTTTTATA
* * * *
26100754 TTTTTTACGACTTTATAAA
1 TTTTTTACAATTTTTTATA
* * * *
26100773 ATTTATA-ATTTTTTTCTA
1 TTTTTTACAATTTTTTATA
* * *
26100791 TATTTCTA-TATATTTTATAA
1 T-TTTTTACAATTTTTTAT-A
*
26100811 TTTTTTACGA-TTTTTATAA
1 TTTTTTACAATTTTTTAT-A
** *
26100830 AATATTACAAATTTTTTATAA
1 TTTTTTAC-AATTTTTTAT-A
** * *
26100851 TTTTTTATGATTTTATAAA
1 TTTTTTACAATTTTTTATA
* *
26100870 TTTTTTATAATTTTTAATA
1 TTTTTTACAATTTTTTATA
26100889 TTTTT
1 TTTTT
26100894 ATAGTTTTTA
Statistics
Matches: 116, Mismatches: 35, Indels: 15
0.70 0.21 0.09
Matches are distributed among these distances:
18 14 0.12
19 78 0.67
20 11 0.09
21 13 0.11
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTTACAATTTTTTATA
Found at i:26100795 original size:58 final size:58
Alignment explanation
Indices: 26100727--26100876 Score: 164
Period size: 58 Copynumber: 2.6 Consensus size: 58
26100717 TTTTTTACAA
* * *
26100727 TTTTTATATTTCTTTACATTTTTTATATTTTTTACGA-CTTTATAAAAT-TTATAATTT
1 TTTTTATATTTCTTTACATTTTATA-ATTTTTTACGATCTTTATAAAATATTACAAATT
* * *
26100784 TTTTCTATATTTCTATATATTTTATAATTTTTTACGATTTTTATAAAATATTACAAA-T
1 TTTT-TATATTTCTTTACATTTTATAATTTTTTACGATCTTTATAAAATATTACAAATT
*
26100842 TTTTTATAATTT-TTTATGATTTTATAAATTTTTTA
1 TTTTTAT-ATTTCTTTA-CATTTTAT-AATTTTTTA
26100877 TAATTTTTAA
Statistics
Matches: 79, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
57 21 0.27
58 44 0.56
59 14 0.18
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (58 bp):
TTTTTATATTTCTTTACATTTTATAATTTTTTACGATCTTTATAAAATATTACAAATT
Found at i:26100884 original size:29 final size:28
Alignment explanation
Indices: 26100774--26100892 Score: 105
Period size: 29 Copynumber: 4.1 Consensus size: 28
26100764 CTTTATAAAA
* * *
26100774 TTTATAATTTTTTTCTATATTTCTATATAT
1 TTTATAAATTTTTTATA-ATTT-TTTATAT
** *
26100804 TTTAT-AATTTTTTACGATTTTTATAAAAT
1 TTTATAAATTTTTTATAATTTTT-T-ATAT
* *
26100833 ATTACAAATTTTTTATAATTTTTTATGAT
1 TTTATAAATTTTTTATAATTTTTTAT-AT
*
26100862 TTTATAAATTTTTTATAATTTTTAATAT
1 TTTATAAATTTTTTATAATTTTTTATAT
26100890 TTT
1 TTT
26100893 TATAGTTTTT
Statistics
Matches: 71, Mismatches: 14, Indels: 10
0.75 0.15 0.11
Matches are distributed among these distances:
27 1 0.01
28 11 0.15
29 39 0.55
30 20 0.28
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (28 bp):
TTTATAAATTTTTTATAATTTTTTATAT
Found at i:26100893 original size:29 final size:29
Alignment explanation
Indices: 26100774--26100931 Score: 101
Period size: 29 Copynumber: 5.4 Consensus size: 29
26100764 CTTTATAAAA
* * *
26100774 TTTATAATTTTTTTCTATATTTCT-ATATAT
1 TTTATAAATTTTTTATA-ATTTTTAATAT-T
** * *
26100804 TTTAT-AATTTTTTACGATTTTTATAAAAT
1 TTTATAAATTTTTTATAATTTTTA-ATATT
* * *
26100833 ATTACAAATTTTTTATAATTTTTTATGA-T
1 TTTATAAATTTTTTATAATTTTTAAT-ATT
26100862 TTTATAAATTTTTTATAATTTTTAATATT
1 TTTATAAATTTTTTATAATTTTTAATATT
* **
26100891 TTTAT--AGTTTTTATTAAAATTTAATCATT
1 TTTATAAATTTTTTA-TAATTTTTAAT-ATT
*
26100920 TTTATAACTTTT
1 TTTATAAATTTT
26100932 ATTTATTTTT
Statistics
Matches: 98, Mismatches: 21, Indels: 17
0.72 0.15 0.12
Matches are distributed among these distances:
27 7 0.07
28 15 0.15
29 50 0.51
30 23 0.23
31 3 0.03
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (29 bp):
TTTATAAATTTTTTATAATTTTTAATATT
Found at i:26100931 original size:10 final size:9
Alignment explanation
Indices: 26100718--26100943 Score: 66
Period size: 9 Copynumber: 23.8 Consensus size: 9
26100708 CATAATTTCT
*
26100718 TTTTTACAA
1 TTTTTATAA
*
26100727 TTTTTATAT
1 TTTTTATAA
* *
26100736 TTCTTTACAT
1 TT-TTTATAA
*
26100746 TTTTTATAT
1 TTTTTATAA
**
26100755 TTTTTACGA
1 TTTTTATAA
*
26100764 -CTTTATAA
1 TTTTTATAA
**
26100772 AATTTATAA
1 TTTTTATAA
*
26100781 TTTTTTTCTATA
1 --TTTTTATA-A
*
26100793 TTTCTAT-A
1 TTTTTATAA
26100801 TATTTTATAA
1 T-TTTTATAA
26100811 TTTTT-TACGA
1 TTTTTATA--A
26100821 TTTTTATAAA
1 TTTTTAT-AA
* * *
26100831 ATATTACAAA
1 TTTTTA-TAA
26100841 TTTTTTATAA
1 -TTTTTATAA
*
26100851 TTTTTTATGA
1 -TTTTTATAA
26100861 -TTTTATAAA
1 TTTTTAT-AA
26100870 TTTTTTATAA
1 -TTTTTATAA
26100880 TTTTTA-ATA
1 TTTTTATA-A
*
26100889 TTTTTATAG
1 TTTTTATAA
26100898 TTTTTATTAAA
1 TTTTTA-T-AA
* * *
26100909 ATTTAATCA
1 TTTTTATAA
26100918 TTTTTATAA
1 TTTTTATAA
* *
26100927 CTTTTATTTA
1 TTTTTA-TAA
26100937 TTTTTAT
1 TTTTTAT
26100944 TTTTATCATT
Statistics
Matches: 160, Mismatches: 36, Indels: 42
0.67 0.15 0.18
Matches are distributed among these distances:
8 16 0.10
9 70 0.44
10 51 0.32
11 21 0.13
12 2 0.01
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:26100942 original size:29 final size:28
Alignment explanation
Indices: 26100861--26100942 Score: 76
Period size: 29 Copynumber: 2.9 Consensus size: 28
26100851 TTTTTTATGA
26100861 TTTTATAAATTTT-TTATAATTTTTAATAT
1 TTTTATAAATTTTATT-T-ATTTTTAATAT
** * **
26100890 TTTTATAGTTTTTATTAAAATTTAATCAT
1 TTTTATAAATTTTATTTATTTTTAAT-AT
*
26100919 TTTTATAACTTTTATTTATTTTTA
1 TTTTATAAATTTTATTTATTTTTA
26100943 TTTTTATCAT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
28 7 0.17
29 32 0.78
30 2 0.05
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (28 bp):
TTTTATAAATTTTATTTATTTTTAATAT
Found at i:26106787 original size:5 final size:5
Alignment explanation
Indices: 26106777--26106808 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
26106767 TCACAGCAGT
26106777 TTTTG TTTTG TTTTG TTTT- TTTT- TTTTG TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
26106809 TTGTCTTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (5 bp):
TTTTG
Found at i:26106803 original size:13 final size:14
Alignment explanation
Indices: 26106777--26106810 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
26106767 TCACAGCAGT
26106777 TTTTGTTTTGTTTTG
1 TTTT-TTTTGTTTTG
26106792 TTTTTTTT-TTTTG
1 TTTTTTTTGTTTTG
26106805 TTTTTT
1 TTTTTT
26106811 GTCTTGCAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 4 0.21
15 4 0.21
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (14 bp):
TTTTTTTTGTTTTG
Found at i:26108698 original size:26 final size:26
Alignment explanation
Indices: 26108666--26108739 Score: 148
Period size: 26 Copynumber: 2.8 Consensus size: 26
26108656 AAAAGAAAGG
26108666 AAAGTAAACAAAGATACTGTACAGAA
1 AAAGTAAACAAAGATACTGTACAGAA
26108692 AAAGTAAACAAAGATACTGTACAGAA
1 AAAGTAAACAAAGATACTGTACAGAA
26108718 AAAGTAAACAAAGATACTGTAC
1 AAAGTAAACAAAGATACTGTAC
26108740 TGAATCAACC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.57, C:0.12, G:0.15, T:0.16
Consensus pattern (26 bp):
AAAGTAAACAAAGATACTGTACAGAA
Found at i:26111636 original size:39 final size:39
Alignment explanation
Indices: 26111579--26111674 Score: 174
Period size: 39 Copynumber: 2.5 Consensus size: 39
26111569 GCTGAAGAAG
* *
26111579 AAACTCAATCATCCAATCAGTTCATCATTCTAATGAAAT
1 AAACTGAATCATCAAATCAGTTCATCATTCTAATGAAAT
26111618 AAACTGAATCATCAAATCAGTTCATCATTCTAATGAAAT
1 AAACTGAATCATCAAATCAGTTCATCATTCTAATGAAAT
26111657 AAACTGAATCATCAAATC
1 AAACTGAATCATCAAATC
26111675 CTAAGTTAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (39 bp):
AAACTGAATCATCAAATCAGTTCATCATTCTAATGAAAT
Found at i:26122428 original size:40 final size:40
Alignment explanation
Indices: 26122377--26122457 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
26122367 TTATAAAGCC
26122377 AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
1 AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
26122417 AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
1 AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
26122457 A
1 A
26122458 GCCAATTCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.32
Consensus pattern (40 bp):
AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
Found at i:26141017 original size:19 final size:19
Alignment explanation
Indices: 26140993--26141032 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
26140983 TATGGAACAC
26140993 CTTCTTTATTCACCCTCCA
1 CTTCTTTATTCACCCTCCA
*
26141012 CTTCTTTATTCGCCCTCCA
1 CTTCTTTATTCACCCTCCA
26141031 CT
1 CT
26141033 CCAGGGGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.42, G:0.03, T:0.42
Consensus pattern (19 bp):
CTTCTTTATTCACCCTCCA
Found at i:26141682 original size:11 final size:11
Alignment explanation
Indices: 26141666--26141700 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
26141656 CTCCCACCCC
26141666 TCCCCTTCCCT
1 TCCCCTTCCCT
26141677 TCCCCTTCCCCT
1 TCCCCTT-CCCT
26141689 TCCCCTTCCCT
1 TCCCCTTCCCT
26141700 T
1 T
26141701 TTGTTTCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (11 bp):
TCCCCTTCCCT
Found at i:26141699 original size:5 final size:6
Alignment explanation
Indices: 26141662--26141698 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
26141652 TGATCTCCCA
26141662 CCCC-T CCCCTT -CCCTT CCCCTT CCCCTT CCCCTT CCC
1 CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT CCC
26141699 TTTTGTTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 9 0.30
6 21 0.70
ACGTcount: A:0.00, C:0.70, G:0.00, T:0.30
Consensus pattern (6 bp):
CCCCTT
Found at i:26143715 original size:31 final size:30
Alignment explanation
Indices: 26143662--26143766 Score: 183
Period size: 30 Copynumber: 3.5 Consensus size: 30
26143652 TAATACCAAT
26143662 AAAATTAAATAATTTGATAATTGAAAAATA
1 AAAATTAAATAATTTGATAATTGAAAAATA
26143692 AAAATTAAATAATTTAGATAATTGAAAAATA
1 AAAATTAAATAATTT-GATAATTGAAAAATA
26143723 AAAATTAAATAATTTGATAATTGAAAAATA
1 AAAATTAAATAATTTGATAATTGAAAAATA
* *
26143753 AATATTAAAAAATT
1 AAAATTAAATAATT
26143767 AATTATTGAA
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
30 42 0.58
31 30 0.42
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (30 bp):
AAAATTAAATAATTTGATAATTGAAAAATA
Found at i:26144731 original size:18 final size:17
Alignment explanation
Indices: 26144634--26144732 Score: 58
Period size: 19 Copynumber: 5.3 Consensus size: 17
26144624 AGGAAAAAAA
26144634 TATAAAAATCATAAAAATT
1 TATAAAAAT-AT-AAAATT
* *
26144653 ATATAAAAAATTGTAAATTTT
1 -TAT-AAAAA-TATAAA-ATT
*
26144674 TATAAAAATAGTAAAAAAT
1 TATAAAAATA-T-AAAATT
26144693 TATAAAATATATAGAAA--
1 TATAAAA-ATATA-AAATT
26144710 TATAAAAATATAAAATT
1 TATAAAAATATAAAATT
26144727 CTATAA
1 -TATAA
26144733 TGTCGTAAGA
Statistics
Matches: 64, Mismatches: 5, Indels: 22
0.70 0.05 0.24
Matches are distributed among these distances:
15 3 0.05
16 5 0.08
17 7 0.11
18 7 0.11
19 18 0.28
20 15 0.23
21 8 0.12
22 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (17 bp):
TATAAAAATATAAAATT
Found at i:26144941 original size:9 final size:9
Alignment explanation
Indices: 26144927--26145083 Score: 59
Period size: 9 Copynumber: 16.7 Consensus size: 9
26144917 GTCGTTAATT
*
26144927 TTTTTATGA
1 TTTTTATAA
26144936 TTTTTATAAA
1 TTTTTAT-AA
*
26144946 ATTTTATAA
1 TTTTTATAA
26144955 -TTTTATAAA
1 TTTTTAT-AA
*
26144964 TTTTTCATGA
1 TTTTT-ATAA
26144974 TTTTTATAAAA
1 TTTTTAT--AA
** *
26144985 AATTTCTAA
1 TTTTTATAA
26144994 TTTTTAATAA
1 TTTTT-ATAA
** *
26145004 AATTTA-AT
1 TTTTTATAA
26145012 TTTTTAT-A
1 TTTTTATAA
26145020 TTTTTATTAAA
1 TTTTTA-T-AA
* *
26145031 ATTTAATAA
1 TTTTTATAA
*
26145040 TTTTTCTAA
1 TTTTTATAA
** *
26145049 AATTTATTA
1 TTTTTATAA
26145058 TTTATTATAA
1 TTT-TTATAA
*
26145068 TTTTTTCTAA
1 -TTTTTATAA
26145078 TTTTTA
1 TTTTTA
26145084 ATAAGAGTAG
Statistics
Matches: 105, Mismatches: 30, Indels: 26
0.65 0.19 0.16
Matches are distributed among these distances:
8 17 0.16
9 39 0.37
10 34 0.32
11 15 0.14
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:26144952 original size:19 final size:19
Alignment explanation
Indices: 26144928--26145008 Score: 83
Period size: 20 Copynumber: 4.2 Consensus size: 19
26144918 TCGTTAATTT
26144928 TTTTATGATTTTTATAAAA
1 TTTTATGATTTTTATAAAA
* *
26144947 TTTTAT-AATTTTATAAAT
1 TTTTATGATTTTTATAAAA
26144965 TTTTCATGATTTTTATAAAAA
1 TTTT-ATGATTTTTAT-AAAA
* * *
26144986 ATTTCTAATTTTTAATAAAA
1 TTTTATGATTTTT-ATAAAA
26145006 TTT
1 TTT
26145009 AATTTTTTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
18 14 0.28
19 8 0.16
20 20 0.40
21 8 0.16
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTTATGATTTTTATAAAA
Found at i:26144968 original size:10 final size:10
Alignment explanation
Indices: 26144935--26144983 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
26144925 TTTTTTTATG
26144935 ATTTTTATAA
1 ATTTTTATAA
*
26144945 AATTTTAT-A
1 ATTTTTATAA
26144954 A-TTTTATAA
1 ATTTTTATAA
*
26144963 ATTTTTCAT-G
1 ATTTTT-ATAA
26144973 ATTTTTATAA
1 ATTTTTATAA
26144983 A
1 A
26144984 AAATTTCTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
8 6 0.19
9 6 0.19
10 18 0.56
11 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (10 bp):
ATTTTTATAA
Found at i:26144996 original size:20 final size:19
Alignment explanation
Indices: 26144935--26145083 Score: 79
Period size: 19 Copynumber: 7.4 Consensus size: 19
26144925 TTTTTTTATG
*
26144935 ATTTTTATAAAATTTTATA
1 ATTTTTATAAAATTTTCTA
* *
26144954 A-TTTTATAAATTTTTCATG
1 ATTTTTATAAAATTTTC-TA
*
26144973 ATTTTTATAAAAAATTTCTA
1 ATTTTTAT-AAAATTTTCTA
*
26144993 ATTTTTAATAAAATTTAATTTTTTA
1 ATTTTT-AT--AA---AATTTTCTA
**
26145018 TATTTTTATTAAAATTTAATA
1 -ATTTTTA-TAAAATTTTCTA
*
26145039 ATTTTTCTAAAATTTAT-T-
1 ATTTTTATAAAATTT-TCTA
**
26145057 ATTTATTATAATTTTTTCTA
1 ATTT-TTATAAAATTTTCTA
26145077 ATTTTTA
1 ATTTTTA
26145084 ATAAGAGTAG
Statistics
Matches: 101, Mismatches: 15, Indels: 28
0.70 0.10 0.19
Matches are distributed among these distances:
18 18 0.18
19 24 0.24
20 23 0.23
21 16 0.16
22 3 0.03
24 2 0.02
25 8 0.08
26 7 0.07
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.59
Consensus pattern (19 bp):
ATTTTTATAAAATTTTCTA
Found at i:26145041 original size:46 final size:46
Alignment explanation
Indices: 26144962--26145072 Score: 118
Period size: 47 Copynumber: 2.4 Consensus size: 46
26144952 TAATTTTATA
* * *
26144962 AATTTTTCATGATTTTTATAAAAAATTTCTAATTTTTAATAAAATTT
1 AATTTTTTATAATTTTTATAAAAAATTTATAATTTTT-ATAAAATTT
* *
26145009 AATTTTTTAT-ATTTTTAT-TAAAATTTAATAATTTTTCTAAAATTT
1 AATTTTTTATAATTTTTATAAAAAATTT-ATAATTTTTATAAAATTT
*
26145054 ATTATTTATTATAATTTTT
1 A--ATTTTTTATAATTTTT
26145073 TCTAATTTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
45 16 0.29
46 16 0.29
47 17 0.31
48 6 0.11
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.59
Consensus pattern (46 bp):
AATTTTTTATAATTTTTATAAAAAATTTATAATTTTTATAAAATTT
Found at i:26145180 original size:87 final size:88
Alignment explanation
Indices: 26145089--26145253 Score: 244
Period size: 88 Copynumber: 1.9 Consensus size: 88
26145079 TTTTAATAAG
* * * *
26145089 AGTAGGGGCTTAATTGC-TTTTTTGAAAAAATTTGAGGGTCTTTTTGATGTATTTTTA-AAGTTC
1 AGTAGGGGCTTAATTACTTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCA-TTTTAGAAGTTC
26145152 AAGTACTCAATTGAGTGAAAAAAA
65 AAGTACTCAATTGAGTGAAAAAAA
* * *
26145176 AGTAGGGGCTTAATTACTTTTTTTGAAGAAGTTTAAGGGCCTTTTTTATGCATTTTAGAAGTTCA
1 AGTAGGGGCTTAATTACTTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTAGAAGTTCA
26145241 AGTACTCAATTGA
66 AGTACTCAATTGA
26145254 ATTTAAAAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
87 21 0.30
88 48 0.70
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (88 bp):
AGTAGGGGCTTAATTACTTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTAGAAGTTCA
AGTACTCAATTGAGTGAAAAAAA
Found at i:26145262 original size:88 final size:87
Alignment explanation
Indices: 26145080--26145264 Score: 237
Period size: 88 Copynumber: 2.1 Consensus size: 87
26145070 TTTTCTAATT
* * * * * *
26145080 TTTAATAAGAGTAGGGGCTTAATTGCTTTTTTGAAAAAATTTGAGGGTCTTTTTGATGTATTTTT
1 TTTAAAAAAAGTAGGGGCTTAATTACTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTT
*
26145145 AAAGTTCAAGTACTCAATTGAG
66 AAAGTTCAAGTACTCAATTGAA
** * * *
26145167 TGAAAAAAAAGTAGGGGCTTAATTACTTTTTTTGAAGAAGTTTAAGGGCCTTTTTTATGCA-TTT
1 TTTAAAAAAAGTAGGGGCTTAATTAC-TTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTT
26145231 TAGAAGTTCAAGTACTCAATTGAA
65 TA-AAGTTCAAGTACTCAATTGAA
26145255 TTTAAAAAAA
1 TTTAAAAAAA
26145265 AGAATAGGGA
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
87 26 0.32
88 56 0.68
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (87 bp):
TTTAAAAAAAGTAGGGGCTTAATTACTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTT
AAAGTTCAAGTACTCAATTGAA
Found at i:26145283 original size:88 final size:87
Alignment explanation
Indices: 26145089--26145287 Score: 217
Period size: 88 Copynumber: 2.3 Consensus size: 87
26145079 TTTTAATAAG
* * * * *
26145089 AGTAGGGGCTTAATTGC-TTTTTTGAAAAAATTTGAGGGTCTTTTTGATGTATTTTTAAAGTTCA
1 AGTAGGGACTTAA-TACTTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTTAAAGTTCA
26145153 AGTACTCAATTGAGTGAAAAAAA
65 AGTACTCAATTGAGTGAAAAAAA
* * * *
26145176 AGTAGGGGCTTAATTACTTTTTTTGAAGAAGTTTAAGGGCCTTTTTTATGCA-TTTTAGAAGTTC
1 AGTAGGGACTTAA-TACTTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTTA-AAGTTC
* *
26145240 AAGTACTCAATTGAATTTAAAAAAA
64 AAGTACTCAATTG-AGTGAAAAAAA
26145265 AGAATAGGGACTT-A-ACTTTTTTT
1 AG--TAGGGACTTAATACTTTTTTT
26145288 TTTTAAGTTT
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
87 21 0.22
88 56 0.58
89 11 0.11
90 1 0.01
91 8 0.08
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (87 bp):
AGTAGGGACTTAATACTTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTTAAAGTTCAA
GTACTCAATTGAGTGAAAAAAA
Found at i:26146785 original size:13 final size:13
Alignment explanation
Indices: 26146755--26146792 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
26146745 AGTTATTTTA
*
26146755 AATTAAATTAA-T
1 AATTAAATAAACT
26146767 -ATTAAATAAACT
1 AATTAAATAAACT
26146779 AATTAAATAAACT
1 AATTAAATAAACT
26146792 A
1 A
26146793 TATATAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 9 0.39
12 1 0.04
13 13 0.57
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (13 bp):
AATTAAATAAACT
Found at i:26149206 original size:12 final size:11
Alignment explanation
Indices: 26149184--26149285 Score: 62
Period size: 11 Copynumber: 8.8 Consensus size: 11
26149174 CAAATACCTC
26149184 TAAAATAATAA
1 TAAAATAATAA
26149195 TAAAATTAATAA
1 TAAAA-TAATAA
*
26149207 TAAAATAATAG
1 TAAAATAATAA
* *
26149218 TTATATAAT-A
1 TAAAATAATAA
*
26149228 TCCAAACAATAACAA
1 T---AA-AATAATAA
* *
26149243 CAAAAATAGTAA
1 -TAAAATAATAA
* *
26149255 TAACATAATAG
1 TAAAATAATAA
*
26149266 TAAAATAGTAA
1 TAAAATAATAA
26149277 TAAAATAAT
1 TAAAATAAT
26149286 GAGAAAACAA
Statistics
Matches: 66, Mismatches: 18, Indels: 14
0.67 0.18 0.14
Matches are distributed among these distances:
10 1 0.02
11 40 0.61
12 17 0.26
13 3 0.05
14 4 0.06
15 1 0.02
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:26153725 original size:24 final size:24
Alignment explanation
Indices: 26153698--26153745 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26153688 AAAGAGAAAA
26153698 AAAAAGTCTGAGAAATTTTAGAGT
1 AAAAAGTCTGAGAAATTTTAGAGT
26153722 AAAAAGTCTGAGAAATTTTAGAGT
1 AAAAAGTCTGAGAAATTTTAGAGT
26153746 GCCAAAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAAGTCTGAGAAATTTTAGAGT
Found at i:26160169 original size:203 final size:203
Alignment explanation
Indices: 26159820--26160229 Score: 786
Period size: 203 Copynumber: 2.0 Consensus size: 203
26159810 TGATGTTTGG
26159820 TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
1 TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
*
26159885 TGCTGCAGTATGAGCAAGACAAAAGGGAATTTTATGGTAAATCTTAGCATACTTTTTCACGCCTT
66 TGCTGCAGTATGAGCAAGACAAAAAGGAATTTTATGGTAAATCTTAGCATACTTTTTCACGCCTT
26159950 GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTATTTTC-
131 GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTA-TTTCA
26160014 ACGTCCCAA
195 ACGTCCCAA
26160023 TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
1 TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
*
26160088 TGCTGCAGTATGAGCAAGACAAAAAGGAATTTTATGGTAAATCTTAGCATACTTTTTCATGCCTT
66 TGCTGCAGTATGAGCAAGACAAAAAGGAATTTTATGGTAAATCTTAGCATACTTTTTCACGCCTT
26160153 GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTATTTCAA
131 GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTATTTCAA
26160218 CGTCCCAA
196 CGTCCCAA
26160226 TTTG
1 TTTG
26160230 TGCCGTCTTT
Statistics
Matches: 204, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
202 4 0.02
203 200 0.98
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (203 bp):
TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
TGCTGCAGTATGAGCAAGACAAAAAGGAATTTTATGGTAAATCTTAGCATACTTTTTCACGCCTT
GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTATTTCAA
CGTCCCAA
Found at i:26175191 original size:125 final size:125
Alignment explanation
Indices: 26175062--26175374 Score: 448
Period size: 125 Copynumber: 2.5 Consensus size: 125
26175052 ACCAAACGGT
* * * *
26175062 AAATCGAAACCCAGTACAATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGTCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCACT
* *
26175127 TTAATTTAAGAAAACATGGATGAAA-TTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATAGA-CAAATTTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
* *
26175187 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCAAAATACGAAATATTGCCTCGCT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCACT
* * *
26175252 TTAATTTAAGAGAACATAGACAAATTTTCAAAAGGATATTCTGTATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATAGACAAATTTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
* * * * * * *
26175312 AAATCGAAACCTAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAAGATTTCCTCA
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCA
26175375 TGTTGAGGGG
Statistics
Matches: 167, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
124 3 0.02
125 164 0.98
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCACT
TTAATTTAAGAAAACATAGACAAATTTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
Found at i:26175994 original size:29 final size:26
Alignment explanation
Indices: 26175930--26175981 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
26175920 AGCTAAATTG
* *
26175930 TACATAAATAAATTTTAAAGAAAATA
1 TACATAAATAAATCTAAAAGAAAATA
*
26175956 TATAT-AATAAATCTAAAAGAAAATA
1 TACATAAATAAATCTAAAAGAAAATA
26175981 T
1 T
26175982 TTACATACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (26 bp):
TACATAAATAAATCTAAAAGAAAATA
Found at i:26181040 original size:21 final size:21
Alignment explanation
Indices: 26181016--26181085 Score: 59
Period size: 24 Copynumber: 3.1 Consensus size: 21
26181006 ATGAATGCCA
26181016 AATGAATTTAAAGAAATAATG
1 AATGAATTTAAAGAAATAATG
* **
26181037 AATGACTTATAAAGAATATAAAA
1 AATGAATT-TAAAGAA-ATAATG
*
26181060 ACATGAATTTTAAAGAACTCAATG
1 A-ATGAA-TTTAAAGAAAT-AATG
26181084 AA
1 AA
26181086 AATAAAAATA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
21 7 0.19
22 7 0.19
23 7 0.19
24 14 0.38
25 2 0.05
ACGTcount: A:0.56, C:0.06, G:0.11, T:0.27
Consensus pattern (21 bp):
AATGAATTTAAAGAAATAATG
Found at i:26181073 original size:24 final size:22
Alignment explanation
Indices: 26181015--26181076 Score: 63
Period size: 24 Copynumber: 2.8 Consensus size: 22
26181005 AATGAATGCC
*
26181015 AAATGAA-TTTAAAGAAATAAT
1 AAATGAATTTTAAAGAAATAAA
* * *
26181036 GAATGACTTATAAAGAATATAAA
1 AAATGAATTTTAAAGAA-ATAAA
26181059 AACATGAATTTTAAAGAA
1 AA-ATGAATTTTAAAGAA
26181077 CTCAATGAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 5 0.16
22 8 0.26
23 5 0.16
24 13 0.42
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.27
Consensus pattern (22 bp):
AAATGAATTTTAAAGAAATAAA
Found at i:26181465 original size:24 final size:24
Alignment explanation
Indices: 26181438--26181483 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
26181428 GAAGTGATTT
26181438 AGTGGGGTGATAGAATTAGTGGCA
1 AGTGGGGTGATAGAATTAGTGGCA
* *
26181462 AGTGGGGTGATGGAGTTAGTGG
1 AGTGGGGTGATAGAATTAGTGG
26181484 TCAGTTTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.48, T:0.26
Consensus pattern (24 bp):
AGTGGGGTGATAGAATTAGTGGCA
Found at i:26184667 original size:15 final size:15
Alignment explanation
Indices: 26184649--26184688 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
26184639 TTAAAATAAA
26184649 TAAATACTAAAATTT
1 TAAATACTAAAATTT
*
26184664 TAAATTCT-AAATTT
1 TAAATACTAAAATTT
*
26184678 TAAATATTAAA
1 TAAATACTAAA
26184689 CCATAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAATACTAAAATTT
Found at i:26186810 original size:18 final size:18
Alignment explanation
Indices: 26186789--26186824 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26186779 AATAATTTTA
*
26186789 AAAAATTAGATAAAATTT
1 AAAAATAAGATAAAATTT
*
26186807 AAAAATAAGATTAAATTT
1 AAAAATAAGATAAAATTT
26186825 GTGATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (18 bp):
AAAAATAAGATAAAATTT
Found at i:26192697 original size:22 final size:22
Alignment explanation
Indices: 26192671--26192718 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
26192661 TAGTAAACTT
* *
26192671 ATAAATTGATTACTTGAATATA
1 ATAAATTAATTAATTGAATATA
* *
26192693 ATAAATTAATTAATTTAATTTA
1 ATAAATTAATTAATTGAATATA
26192715 ATAA
1 ATAA
26192719 CTTATATTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (22 bp):
ATAAATTAATTAATTGAATATA
Found at i:26197267 original size:29 final size:29
Alignment explanation
Indices: 26197225--26197282 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
26197215 ATTGTTGGAG
*
26197225 AACGCAGGTTTATGTTGGTTGATAGTGGT
1 AACGCAGCTTTATGTTGGTTGATAGTGGT
26197254 AACGCAGCTTTATGTTGGTTGATAGTGGT
1 AACGCAGCTTTATGTTGGTTGATAGTGGT
26197283 TCATAGATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.21, C:0.09, G:0.33, T:0.38
Consensus pattern (29 bp):
AACGCAGCTTTATGTTGGTTGATAGTGGT
Found at i:26198350 original size:87 final size:87
Alignment explanation
Indices: 26198248--26198429 Score: 348
Period size: 87 Copynumber: 2.1 Consensus size: 87
26198238 CAGGTATGTC
26198248 TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
1 TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
*
26198313 ATATGTTTACATATTTTGCAGG
66 ATATGTCTACATATTTTGCAGG
26198335 TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
1 TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
26198400 ATATGTCTACATATTTTGCAGG
66 ATATGTCTACATATTTTGCAGG
26198422 T-CTACTTT
1 TACTACTTT
26198430 GGAAAGACGA
Statistics
Matches: 94, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
86 7 0.07
87 87 0.93
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (87 bp):
TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
ATATGTCTACATATTTTGCAGG
Found at i:26202147 original size:18 final size:19
Alignment explanation
Indices: 26202110--26202148 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26202100 ATTACAAAAT
*
26202110 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTATAA
*
26202129 AATTTAAAAT-ATTTATAA
1 AATTCAAAATAATTTATAA
26202147 AA
1 AA
26202149 AAATCCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTCAAAATAATTTATAA
Found at i:26203035 original size:16 final size:16
Alignment explanation
Indices: 26203016--26203050 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
26203006 TTAATTTTTT
26203016 AAAATTTTAAAAATTA
1 AAAATTTTAAAAATTA
*
26203032 AAAATTTTAAAATTTA
1 AAAATTTTAAAAATTA
26203048 AAA
1 AAA
26203051 CCATTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAATTTTAAAAATTA
Found at i:26203068 original size:9 final size:8
Alignment explanation
Indices: 26203012--26203050 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
26203002 TTTATTAATT
26203012 TTTTAAAA
1 TTTTAAAA
26203020 TTTTAAAA
1 TTTTAAAA
* *
26203028 ATTAAAAA
1 TTTTAAAA
26203036 TTTTAAAA
1 TTTTAAAA
26203044 -TTTAAAA
1 TTTTAAAA
26203051 CCATTAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
7 7 0.26
8 20 0.74
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
TTTTAAAA
Found at i:26211015 original size:26 final size:25
Alignment explanation
Indices: 26210972--26211024 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
26210962 TTTGGGATGG
26210972 AATGAGAGTAAATATTTT-AGGAGAA
1 AATGAGAGTAAATATTTTGAGG-GAA
26210997 AATGAGGAGTAAA-AGTTTTGAGGGAA
1 AATGA-GAGTAAATA-TTTTGAGGGAA
26211023 AA
1 AA
26211025 GTAAAAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 6 0.24
26 16 0.64
27 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.28, T:0.25
Consensus pattern (25 bp):
AATGAGAGTAAATATTTTGAGGGAA
Found at i:26221797 original size:15 final size:15
Alignment explanation
Indices: 26221777--26221807 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26221767 CGGTGAGAGG
26221777 AAAAAGGAAAAGAAA
1 AAAAAGGAAAAGAAA
*
26221792 AAAAAGGAAATGAAA
1 AAAAAGGAAAAGAAA
26221807 A
1 A
26221808 TTTTGTCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03
Consensus pattern (15 bp):
AAAAAGGAAAAGAAA
Found at i:26224268 original size:21 final size:21
Alignment explanation
Indices: 26224224--26224269 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
26224214 ATTTTTTTTT
*
26224224 GAAT-TGAGTCGAGTGAAATG
1 GAATCTGAGTCGAGTGAAATC
26224244 GAATCTGAGTCGAGTTG-AATC
1 GAATCTGAGTCGAG-TGAAATC
26224265 GAATC
1 GAATC
26224270 GAGCAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 17 0.74
22 2 0.09
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (21 bp):
GAATCTGAGTCGAGTGAAATC
Found at i:26224554 original size:27 final size:27
Alignment explanation
Indices: 26224509--26224567 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
26224499 TTTTTAATTT
*
26224509 TTTTATAATATTTTAAAAAAATATAAA
1 TTTTAGAATATTTTAAAAAAATATAAA
* *
26224536 TTTTAGAAT-TTTTATAAAAAATTTGAA
1 TTTTAGAATATTTTA-AAAAAATATAAA
26224563 TTTTA
1 TTTTA
26224568 AAAATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.49
Consensus pattern (27 bp):
TTTTAGAATATTTTAAAAAAATATAAA
Found at i:26227581 original size:42 final size:43
Alignment explanation
Indices: 26227511--26227636 Score: 152
Period size: 41 Copynumber: 3.0 Consensus size: 43
26227501 TAAAATACAG
* * ** *
26227511 AAACGCCGCTAAA-AACAGAGCAACAGCGGCG-TTTTAGTAAA
1 AAACGCCGCTAAAGACCGGAGCATTAGCGGCGCTTTTGGTAAA
* * *
26227552 AAATGCCGTTAAAGACCGGAGCATTAGCGGCGCCTTTGGT--A
1 AAACGCCGCTAAAGACCGGAGCATTAGCGGCGCTTTTGGTAAA
26227593 AAACGCCGCTAAAGACCGGAGCATTAGCGGCGCTTTTGGTAAA
1 AAACGCCGCTAAAGACCGGAGCATTAGCGGCGCTTTTGGTAAA
26227636 A
1 A
26227637 TGCCGCTAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 49 0.70
42 14 0.20
43 7 0.10
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.18
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCGGAGCATTAGCGGCGCTTTTGGTAAA
Found at i:26227613 original size:41 final size:41
Alignment explanation
Indices: 26227551--26227646 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 41
26227541 GTTTTAGTAA
*
26227551 AAAATGCCGTTAAAGACCGGAGCATTAGCGGCGCCTTTGGT
1 AAAATGCCGCTAAAGACCGGAGCATTAGCGGCGCCTTTGGT
* *
26227592 AAAACGCCGCTAAAGACCGGAGCATTAGCGGCGCTTTTGGT
1 AAAATGCCGCTAAAGACCGGAGCATTAGCGGCGCCTTTGGT
26227633 AAAATGCCGCTAAA
1 AAAATGCCGCTAAA
26227647 AGTTATATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (41 bp):
AAAATGCCGCTAAAGACCGGAGCATTAGCGGCGCCTTTGGT
Found at i:26227875 original size:18 final size:19
Alignment explanation
Indices: 26227834--26227877 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
26227824 GTTTAAGATA
26227834 TATGGTTTAGAGTTTAAAC
1 TATGGTTTAGAGTTTAAAC
26227853 -A-GGTTTATGAG-TT-AAC
1 TATGGTTTA-GAGTTTAAAC
26227869 TATGGTTTA
1 TATGGTTTA
26227878 AGATATACGG
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
16 3 0.14
17 9 0.41
18 10 0.45
ACGTcount: A:0.30, C:0.05, G:0.23, T:0.43
Consensus pattern (19 bp):
TATGGTTTAGAGTTTAAAC
Found at i:26228438 original size:14 final size:14
Alignment explanation
Indices: 26228419--26228463 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
26228409 TTAATTATCA
26228419 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
26228433 TTATAGTTTAGTGT
1 TTATAGTTTAGGGT
* *
26228447 GTATGGTTTAGGGT
1 TTATAGTTTAGGGT
26228461 TTA
1 TTA
26228464 ATTTTTAGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:26228835 original size:15 final size:16
Alignment explanation
Indices: 26228809--26228846 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
26228799 AAAAATATGT
*
26228809 TAAAAATAAAAAA-AA
1 TAAAATTAAAAAATAA
*
26228824 TTAAATTAAAAAATAA
1 TAAAATTAAAAAATAA
26228840 TAAAATT
1 TAAAATT
26228847 TATGAATTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAATTAAAAAATAA
Found at i:26228839 original size:22 final size:21
Alignment explanation
Indices: 26228788--26228844 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
26228778 ATTTTGAAAG
**
26228788 AAAAAATAGAAAAAAATATGTT
1 AAAAAATA-AAAAAAATAAATT
26228810 -AAAAATAAAAAAAATTAAATT
1 AAAAAATAAAAAAAA-TAAATT
*
26228831 AAAAAATAATAAAA
1 AAAAAATAAAAAAA
26228845 TTTATGAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 7 0.23
21 11 0.37
22 12 0.40
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (21 bp):
AAAAAATAAAAAAAATAAATT
Found at i:26231296 original size:40 final size:40
Alignment explanation
Indices: 26231232--26231344 Score: 138
Period size: 40 Copynumber: 2.9 Consensus size: 40
26231222 GCTACTCGTT
* * * ***
26231232 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
26231272 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
26231312 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
26231345 TTCGTACATT
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 18 0.29
40 45 0.71
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.20
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:26234678 original size:21 final size:21
Alignment explanation
Indices: 26234633--26234678 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
26234623 CATTTCATTG
*
26234633 TGTTTGGAAGAAACAAAGAAG
1 TGTTTGGAAGAAACAAAGAAA
* * *
26234654 TGTTTGGAATAAATAAATAAA
1 TGTTTGGAAGAAACAAAGAAA
26234675 TGTT
1 TGTT
26234679 GTCAACATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.30
Consensus pattern (21 bp):
TGTTTGGAAGAAACAAAGAAA
Found at i:26236737 original size:7 final size:7
Alignment explanation
Indices: 26236727--26236759 Score: 52
Period size: 6 Copynumber: 5.0 Consensus size: 7
26236717 TTTATTATTT
26236727 TAAATTC
1 TAAATTC
26236734 TAAATT-
1 TAAATTC
26236740 TAAATTC
1 TAAATTC
26236747 TAAATT-
1 TAAATTC
26236753 TAAATTC
1 TAAATTC
26236760 ATTAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (7 bp):
TAAATTC
Found at i:26236741 original size:13 final size:13
Alignment explanation
Indices: 26236725--26236759 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
26236715 AATTTATTAT
26236725 TTTAAATTCTAAA
1 TTTAAATTCTAAA
26236738 TTTAAATTCTAAA
1 TTTAAATTCTAAA
26236751 TTTAAATTC
1 TTTAAATTC
26236760 ATTAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (13 bp):
TTTAAATTCTAAA
Found at i:26237008 original size:31 final size:32
Alignment explanation
Indices: 26236952--26237012 Score: 106
Period size: 33 Copynumber: 1.9 Consensus size: 32
26236942 ATAGCGGCGT
26236952 TTTTAGCGGCGCTTTTACAAGCGTCGCTAATAG
1 TTTTAGCGGCGCTTTTA-AAGCGTCGCTAATAG
26236985 TTTTAGCGGCGCTTTT-AAGCGTCGCTAA
1 TTTTAGCGGCGCTTTTAAAGCGTCGCTAA
26237013 AGACCTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 12 0.43
33 16 0.57
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (32 bp):
TTTTAGCGGCGCTTTTAAAGCGTCGCTAATAG
Found at i:26237913 original size:10 final size:10
Alignment explanation
Indices: 26237898--26237926 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
26237888 CAATGATCCG
26237898 ATTACATATC
1 ATTACATATC
26237908 ATTACATATC
1 ATTACATATC
26237918 ATTACATAT
1 ATTACATAT
26237927 TCAAGATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (10 bp):
ATTACATATC
Found at i:26242071 original size:9 final size:9
Alignment explanation
Indices: 26242035--26242076 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
26242025 TTATAACTAA
26242035 TTAATT-AC
1 TTAATTAAC
*
26242043 TTAATTATC
1 TTAATTAAC
26242052 TTAATTAAAC
1 TTAATT-AAC
26242062 TTAATTAAC
1 TTAATTAAC
*
26242071 TAAATT
1 TTAATT
26242077 TAATCATCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
8 6 0.21
9 15 0.52
10 8 0.28
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (9 bp):
TTAATTAAC
Found at i:26242076 original size:19 final size:19
Alignment explanation
Indices: 26242028--26242073 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
26242018 ACTTAGTTTA
26242028 TAACTAATTAATTACTTAAT
1 TAACTAATTAA-TACTTAAT
*
26242048 TATCTTAATTAA-ACTTAAT
1 TAAC-TAATTAATACTTAAT
26242067 TAACTAA
1 TAACTAA
26242074 ATTTAATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 3 0.13
19 10 0.43
20 3 0.13
21 7 0.30
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (19 bp):
TAACTAATTAATACTTAAT
Found at i:26243530 original size:35 final size:35
Alignment explanation
Indices: 26243488--26243560 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
26243478 TCATAACCTT
26243488 CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
1 CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
26243523 CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
1 CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
26243558 CTT
1 CTT
26243561 AAGTTTACTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.19, C:0.18, G:0.08, T:0.55
Consensus pattern (35 bp):
CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
Found at i:26245141 original size:22 final size:22
Alignment explanation
Indices: 26245090--26245141 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
26245080 TTACTTTAAA
*
26245090 ATTTAAT--TATAAAAATATGT
1 ATTTAATAATATAAAAATATAT
* * *
26245110 AATTATTAATATAAAATTATAT
1 ATTTAATAATATAAAAATATAT
26245132 ATTTAATAAT
1 ATTTAATAAT
26245142 TATTGATATT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 5 0.21
22 19 0.79
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
ATTTAATAATATAAAAATATAT
Found at i:26245784 original size:23 final size:22
Alignment explanation
Indices: 26245740--26245799 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
26245730 ATAATGATAT
* *
26245740 TATAATATATATTTTTGTATTAA
1 TATAA-ATATAATTTTATATTAA
26245763 TATAAATATAATTTTATAATTAA
1 TATAAATATAATTTTAT-ATTAA
* *
26245786 AATTAA-ATAATTTT
1 TATAAATATAATTTT
26245800 TTTAAAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TATAAATATAATTTTATATTAA
Found at i:26246536 original size:17 final size:18
Alignment explanation
Indices: 26246506--26246539 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
26246496 ATTAATTAGT
26246506 TTGAAATAATTAAAATAA
1 TTGAAATAATTAAAATAA
26246524 TTGAAAT-ATTAAAATA
1 TTGAAATAATTAAAATA
26246540 TATCAACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
TTGAAATAATTAAAATAA
Found at i:26249438 original size:3 final size:3
Alignment explanation
Indices: 26249430--26249454 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
26249420 AGATGGCAAC
26249430 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
26249455 TTGGATTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:26254480 original size:2 final size:2
Alignment explanation
Indices: 26254473--26254525 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
26254463 TGTGTACATT
26254473 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
26254515 GA GA GA GA GA G
1 GA GA GA GA GA G
26254526 GGAATGAAAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26256053 original size:2 final size:2
Alignment explanation
Indices: 26256046--26256075 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26256036 GGTGGAGGAG
26256046 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
26256076 ACGAAAGGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26258043 original size:197 final size:197
Alignment explanation
Indices: 26257708--26258104 Score: 785
Period size: 197 Copynumber: 2.0 Consensus size: 197
26257698 TTTTTTTTTT
26257708 AAGTCTAACTAACGAGTTTCAAACAATGATCCGACGATCGTAATTGTGGATCTAAAAATTGGTAT
1 AAGTCTAACTAACGAGTTTCAAACAATGATCCGACGATCGTAATTGTGGATCTAAAAATTGGTAT
26257773 TGTAAACTAAAGAATAAAGTTATTTAGATTTTAATTCATTGATTCAAGATGTTAAAAACTATTTC
66 TGTAAACTAAAGAATAAAGTTATTTAGATTTTAATTCATTGATTCAAGATGTTAAAAACTATTTC
26257838 ATGAAAAAAACTAATCTATTGAAGAGAAATGAGAGCTTTTGATTAGTACAAATTATACGAATAAA
131 ATGAAAAAAACTAATCTATTGAAGAGAAATGAGAGCTTTTGATTAGTACAAATTATACGAATAAA
26257903 GA
196 GA
*
26257905 AAGTCTAACTAACGAGTTTCAAACAATGATCCGATGATCGTAATTGTGGATCTAAAAATTGGTAT
1 AAGTCTAACTAACGAGTTTCAAACAATGATCCGACGATCGTAATTGTGGATCTAAAAATTGGTAT
26257970 TGTAAACTAAAGAATAAAGTTATTTAGATTTTAATTCATTGATTCAAGATGTTAAAAACTATTTC
66 TGTAAACTAAAGAATAAAGTTATTTAGATTTTAATTCATTGATTCAAGATGTTAAAAACTATTTC
26258035 ATGAAAAAAACTAATCTATTGAAGAGAAATGAGAGCTTTTGATTAGTACAAATTATACGAATAAA
131 ATGAAAAAAACTAATCTATTGAAGAGAAATGAGAGCTTTTGATTAGTACAAATTATACGAATAAA
26258100 GA
196 GA
26258102 AAG
1 AAG
26258105 CCATACAATA
Statistics
Matches: 199, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
197 199 1.00
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (197 bp):
AAGTCTAACTAACGAGTTTCAAACAATGATCCGACGATCGTAATTGTGGATCTAAAAATTGGTAT
TGTAAACTAAAGAATAAAGTTATTTAGATTTTAATTCATTGATTCAAGATGTTAAAAACTATTTC
ATGAAAAAAACTAATCTATTGAAGAGAAATGAGAGCTTTTGATTAGTACAAATTATACGAATAAA
GA
Found at i:26260125 original size:39 final size:39
Alignment explanation
Indices: 26260072--26260150 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
26260062 AAATATGGTT
*
26260072 TTAATTAATAATAAAACAAAGTGGCATAGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAGCATAGGGGAGTGGGA
* *
26260111 TTAATTAATAATAAAATAAAGTAGCATGGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAGCATAGGGGAGTGGGA
26260150 T
1 T
26260151 CAGCTTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.43, C:0.04, G:0.28, T:0.25
Consensus pattern (39 bp):
TTAATTAATAATAAAACAAAGTAGCATAGGGGAGTGGGA
Done.