Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 91 of 335
Found at i:29522457 original size:15 final size:15
Alignment explanation
Indices: 29522434--29522463 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
29522424 CATAACAAAT
29522434 AAGAAGAAGAAGAAA
1 AAGAAGAAGAAGAAA
*
29522449 AAGACGAAGAAGAAA
1 AAGAAGAAGAAGAAA
29522464 TGGACACACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.03, G:0.27, T:0.00
Consensus pattern (15 bp):
AAGAAGAAGAAGAAA
Found at i:29525456 original size:16 final size:16
Alignment explanation
Indices: 29525422--29525463 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
29525412 CATTTGATTT
*
29525422 ATTATTTTTAACTTAA
1 ATTATTTTTAAATTAA
29525438 ATTATTTTTATAATT-A
1 ATTATTTTTA-AATTAA
29525454 ATTATCTTTT
1 ATTAT-TTTT
29525464 GAGTAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTATTTTTAAATTAA
Found at i:29529064 original size:18 final size:19
Alignment explanation
Indices: 29529039--29529086 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 19
29529029 TTTGCTAACA
*
29529039 ATATTTTTTATTTATTATT
1 ATATTTTTAATTTATTATT
29529058 ATATTTTTAAAATTTATTATT
1 ATATTTTT--AATTTATTATT
29529079 ATATTTTT
1 ATATTTTT
29529087 TAAAAACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 8 0.31
21 18 0.69
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
ATATTTTTAATTTATTATT
Found at i:29529074 original size:21 final size:22
Alignment explanation
Indices: 29529048--29529091 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
29529038 AATATTTTTT
29529048 ATTTATTATTATA-TTTTTAAA
1 ATTTATTATTATATTTTTTAAA
29529069 ATTTATTATTATATTTTTTAAA
1 ATTTATTATTATATTTTTTAAA
29529091 A
1 A
29529092 ACTATTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
ATTTATTATTATATTTTTTAAA
Found at i:29529097 original size:22 final size:21
Alignment explanation
Indices: 29529051--29529097 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
29529041 ATTTTTTATT
**
29529051 TATTATTATATTTTTAAAATT
1 TATTATTATATTTTTAAAAAC
29529072 TATTATTATATTTTTTAAAAAC
1 TATTATTATA-TTTTTAAAAAC
29529094 TATT
1 TATT
29529098 TATGTAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTATTATATTTTTAAAAAC
Found at i:29529484 original size:15 final size:15
Alignment explanation
Indices: 29529464--29529494 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
29529454 ACAATAAATG
29529464 TTAAATTTATTCAAT
1 TTAAATTTATTCAAT
*
29529479 TTAAATTTATTTAAT
1 TTAAATTTATTCAAT
29529494 T
1 T
29529495 CTTTTTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TTAAATTTATTCAAT
Found at i:29534341 original size:21 final size:21
Alignment explanation
Indices: 29534317--29534358 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
29534307 TTAGTTATGG
* * *
29534317 TAAATAATAAATTATATTTTT
1 TAAACAATAAATGATAGTTTT
29534338 TAAACAATAAATGATAGTTTT
1 TAAACAATAAATGATAGTTTT
29534359 ATTTTAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (21 bp):
TAAACAATAAATGATAGTTTT
Found at i:29534375 original size:16 final size:16
Alignment explanation
Indices: 29534354--29534384 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29534344 ATAAATGATA
*
29534354 GTTTTATTTTAATTTG
1 GTTTTATTTGAATTTG
29534370 GTTTTATTTGAATTT
1 GTTTTATTTGAATTT
29534385 TTTTAATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.13, T:0.68
Consensus pattern (16 bp):
GTTTTATTTGAATTTG
Found at i:29534685 original size:19 final size:19
Alignment explanation
Indices: 29534636--29534687 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
29534626 AAAACATATA
*
29534636 TTTTTATAAATTT-TATACT
1 TTTTTA-AAATTTATATAAT
*
29534655 TTTTAAATAATTTATATAAT
1 TTTTTAA-AATTTATATAAT
29534675 TTTTTAAAATTTA
1 TTTTTAAAATTTA
29534688 AAATTTTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 1 0.04
19 16 0.57
20 11 0.39
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTAAAATTTATATAAT
Found at i:29540507 original size:17 final size:18
Alignment explanation
Indices: 29540485--29540520 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
29540475 GAACCTGATT
29540485 TTTTAAT-ATATTTTAAA
1 TTTTAATAATATTTTAAA
*
29540502 TTTTAATAATTTTTTAAA
1 TTTTAATAATATTTTAAA
29540520 T
1 T
29540521 AATAAATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTAATAATATTTTAAA
Found at i:29542077 original size:25 final size:23
Alignment explanation
Indices: 29542025--29542079 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
29542015 TATAAATAGT
29542025 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
29542048 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
29542073 AATAGTG
1 AATAGTG
29542080 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:29542826 original size:18 final size:18
Alignment explanation
Indices: 29542803--29542856 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
29542793 ACAAGTGGTG
29542803 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
29542821 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
29542833 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
29542851 GTGGAG
1 GTGGAG
29542857 TTGGTGGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:29544286 original size:15 final size:16
Alignment explanation
Indices: 29544268--29544302 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
29544258 AAAATATACA
29544268 AATTTAAAAAT-AAAT
1 AATTTAAAAATAAAAT
29544283 AA-TTAAAAATAAAAT
1 AATTTAAAAATAAAAT
29544298 AATTT
1 AATTT
29544303 CTTTTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.44
15 8 0.44
16 2 0.11
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AATTTAAAAATAAAAT
Found at i:29549405 original size:38 final size:38
Alignment explanation
Indices: 29549362--29549440 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
29549352 ATGACTGGAC
29549362 TAAGGTTTCTAAATAAAAAGTTAAAAGATCTTACTTTT
1 TAAGGTTTCTAAATAAAAAGTTAAAAGATCTTACTTTT
29549400 TAAGGTTTCTAAATAAAAAGTTAAAAGATCTTACTTTT
1 TAAGGTTTCTAAATAAAAAGTTAAAAGATCTTACTTTT
29549438 TAA
1 TAA
29549441 TCAAGCTCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (38 bp):
TAAGGTTTCTAAATAAAAAGTTAAAAGATCTTACTTTT
Found at i:29552255 original size:8 final size:8
Alignment explanation
Indices: 29552241--29552270 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
29552231 TATAAAAAAA
29552241 TATTTTAT
1 TATTTTAT
*
29552249 CATTTTAT
1 TATTTTAT
29552257 TATTTTAT
1 TATTTTAT
29552265 TATTTT
1 TATTTT
29552271 TTAGTTCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (8 bp):
TATTTTAT
Found at i:29552444 original size:23 final size:23
Alignment explanation
Indices: 29552418--29552482 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
29552408 TTAAAAATCT
29552418 ATATTTTTATATATTTTTTAAAAA
1 ATATTTTTATATA-TTTTTAAAAA
* *
29552442 TATATTTTT-T-TAATTTAAAAAA
1 -ATATTTTTATATATTTTTAAAAA
29552464 ATATTTTTTATATATTTTT
1 ATA-TTTTTATATATTTTT
29552483 GATTTTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
21 3 0.09
22 13 0.39
23 3 0.09
24 6 0.18
25 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
ATATTTTTATATATTTTTAAAAA
Found at i:29554318 original size:22 final size:22
Alignment explanation
Indices: 29554263--29554308 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
29554253 TATGAATACG
* *
29554263 GAGAGATTTGTACTTTGTTCTT
1 GAGAGATTTGCATTTTGTTCTT
29554285 GAGAGATTTGCATTTTGTTCTT
1 GAGAGATTTGCATTTTGTTCTT
29554307 GA
1 GA
29554309 ACGTATTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.09, G:0.24, T:0.48
Consensus pattern (22 bp):
GAGAGATTTGCATTTTGTTCTT
Found at i:29578879 original size:39 final size:39
Alignment explanation
Indices: 29578854--29579017 Score: 276
Period size: 39 Copynumber: 4.2 Consensus size: 39
29578844 GGACTTTAGC
* * * *
29578854 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
29578893 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
29578932 CCGGATATAATTCCAGCACATAGCCTGCGGA-CCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
29578970 CCGGATATAATTCCAGCACATAGCCTGCGGATCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
29579009 CCGGATATA
1 CCGGATATA
29579018 CATCACTGAA
Statistics
Matches: 120, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
38 38 0.32
39 82 0.68
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:29578997 original size:77 final size:78
Alignment explanation
Indices: 29578854--29579017 Score: 285
Period size: 77 Copynumber: 2.1 Consensus size: 78
29578844 GGACTTTAGC
* * *
29578854 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
29578919 GCGGACCCTAAGT
66 GCGGACCCTAAGT
29578932 CCGGATATAATTCCAGCACATAGCCTGCGGACC-TAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
*
29578996 GCGGATCCTAAGT
66 GCGGACCCTAAGT
29579009 CCGGATATA
1 CCGGATATA
29579018 CATCACTGAA
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
77 52 0.63
78 30 0.37
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (78 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
GCGGACCCTAAGT
Found at i:29581396 original size:21 final size:21
Alignment explanation
Indices: 29581371--29581412 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
29581361 CTTTTTAATT
*
29581371 AATTTATCATTGAAACGTTAA
1 AATTTATCAATGAAACGTTAA
* *
29581392 AATTTTTCAATGAAACTTTAA
1 AATTTATCAATGAAACGTTAA
29581413 TATCACCTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (21 bp):
AATTTATCAATGAAACGTTAA
Found at i:29594359 original size:25 final size:25
Alignment explanation
Indices: 29594327--29594377 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
29594317 CTTTTATCCC
29594327 TTTTAAGTCTCATAATATTTCTTCT
1 TTTTAAGTCTCATAATATTTCTTCT
29594352 TTTTAAGTCTCATAATATTTCTTCT
1 TTTTAAGTCTCATAATATTTCTTCT
29594377 T
1 T
29594378 GTAGGTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.04, T:0.57
Consensus pattern (25 bp):
TTTTAAGTCTCATAATATTTCTTCT
Found at i:29597998 original size:31 final size:29
Alignment explanation
Indices: 29597924--29597999 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
29597914 TGACTTTAAT
*
29597924 ATTCAATTTGGTACCTAAAATTTATTTTG
1 ATTCAATTTGGTACTTAAAATTTATTTTG
** * *
29597953 ATTCAATTAAGTACTTAAACTTTGCTTCTTG
1 ATTCAATTTGGTACTTAAAATTT-ATT-TTG
*
29597984 GTTCAATTTGGTACTT
1 ATTCAATTTGGTACTT
29598000 GAACCTAACT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 19 0.51
30 2 0.05
31 16 0.43
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (29 bp):
ATTCAATTTGGTACTTAAAATTTATTTTG
Found at i:29598199 original size:61 final size:59
Alignment explanation
Indices: 29598087--29598203 Score: 180
Period size: 61 Copynumber: 1.9 Consensus size: 59
29598077 ACCAAAAAGG
** *
29598087 TAAGTTTAGATACTTAATTAGACAAAAAAAAGTTCAAGTATCAAATTGAACCTTGACAC
1 TAAGTTTAGATACCCAATTAGAAAAAAAAAAGTTCAAGTATCAAATTGAACCTTGACAC
*
29598146 TAAGTTTAGATACCCAATTAGATAAAAAAAAAAGTTTAAGTATCAAATTGAACCTTGA
1 TAAGTTTAGATACCCAATTAG--AAAAAAAAAAGTTCAAGTATCAAATTGAACCTTGA
29598204 GGCAAAATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
59 19 0.37
61 33 0.63
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (59 bp):
TAAGTTTAGATACCCAATTAGAAAAAAAAAAGTTCAAGTATCAAATTGAACCTTGACAC
Found at i:29598234 original size:61 final size:61
Alignment explanation
Indices: 29598102--29598236 Score: 166
Period size: 61 Copynumber: 2.2 Consensus size: 61
29598092 TTAGATACTT
* * *
29598102 AATTAGAC--AAAAAAAAGTTCAAGTATCAAATTGAACCTTGACACTAAGTTTAGATACCC
1 AATTAGACAAAAAAAAAAGTTCAAGTATCAAATTGAACCTTGACACAAAATTTAGACACCC
* * ** * *
29598161 AATTAGATAAAAAAAAAAGTTTAAGTATCAAATTGAACCTTGAGGCAAAATTTAGGCACCT
1 AATTAGACAAAAAAAAAAGTTCAAGTATCAAATTGAACCTTGACACAAAATTTAGACACCC
*
29598222 AATTGGACAAAAAAA
1 AATTAGACAAAAAAA
29598237 CACATTAGGT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 7 0.11
61 56 0.89
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.24
Consensus pattern (61 bp):
AATTAGACAAAAAAAAAAGTTCAAGTATCAAATTGAACCTTGACACAAAATTTAGACACCC
Found at i:29603212 original size:64 final size:64
Alignment explanation
Indices: 29603085--29603275 Score: 294
Period size: 64 Copynumber: 3.0 Consensus size: 64
29603075 TCATTCATAA
* * * *
29603085 CACATCCAGTTAGGAGCATTTGATTCA-TTTCAATAAAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATTATAGCATCCTAATTATTTGACATAAGCAT
*
29603148 CACATCTAGTTAGGTGCATTTGATTCATTTTGATTATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATTATAGCATCCTAATTATTTGACATAAGCAT
* ** *
29603212 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAATATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATTATAGCATCCTAATTATTTGACATAAGCAT
29603276 GATACATGAA
Statistics
Matches: 117, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
63 25 0.21
64 92 0.79
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTTGATTATAGCATCCTAATTATTTGACATAAGCAT
Found at i:29604437 original size:30 final size:30
Alignment explanation
Indices: 29604390--29604449 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
29604380 TTCCCGAGCC
29604390 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
29604420 TAGGGGCAAAA-TGGTAATTTTGCAAAAGTT
1 TAGGGGAAAAAGT-GTAATTATGCAAAAGTT
29604450 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.40, C:0.05, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:29604921 original size:47 final size:46
Alignment explanation
Indices: 29604864--29605046 Score: 230
Period size: 47 Copynumber: 3.9 Consensus size: 46
29604854 CTAGGATGGT
*
29604864 TGAACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
1 TGAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
* *
29604910 TGGAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG
1 T-GAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
29604954 T-AACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
1 TGAAC---G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
* * *
29605004 CGAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TGAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
29605047 GCCGGTTACA
Statistics
Matches: 119, Mismatches: 8, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
42 3 0.03
44 5 0.04
45 1 0.01
46 38 0.32
47 62 0.52
48 3 0.03
50 4 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TGAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
Found at i:29606660 original size:176 final size:176
Alignment explanation
Indices: 29606420--29606866 Score: 644
Period size: 176 Copynumber: 2.5 Consensus size: 176
29606410 GCAGTGGAGT
* * *
29606420 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCCGAGCAGATCGAAGATGGCGAATCTT
1 AGACTGAAGATTGAAAATCTTATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGATGGCGAATCTT
* * *
29606485 ATCTCCATGTATCGGCAATGGAGCAGATTTTACCATTGGCCTTATCTCTCTGAGGTAGCAAGAGA
66 ATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTGACCTTATCTCTCTGAAGTAGCAAGAGA
* * *
29606550 GCAGATTGGCGATTGTAGTCTTATCTTCCTGA-GATAGTAAGTAAGC
131 GCAGATTGGCGATTGTAGTCTTATATTCCTGATG-TAGCAAGGAAGC
* * * * * * *
29606596 AGACTGAAAATTGAAAATTTTATATCTCTAAGTAGTAGAGGAGCAGATTGAAGATGGTGAATCTT
1 AGACTGAAGATTGAAAATCTTATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGATGGCGAATCTT
*
29606661 ATCTCCATGTATCGACAATGGAGCAGATTTTACCACTGACCTTATCTCTCTGAAGTAGCAAGAGA
66 ATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTGACCTTATCTCTCTGAAGTAGCAAGAGA
* * *
29606726 GCAGGTTGGCGATTGTAGTCTTATATTTCTGATGTAGCAAGGAAGT
131 GCAGATTGGCGATTGTAGTCTTATATTCCTGATGTAGCAAGGAAGC
* * *
29606772 AGACTGAAGATTGAAAATCTTATCTCCCTAGGCAGTTGCGGAGCAGATTGAGGATGGCGAATCTT
1 AGACTGAAGATTGAAAATCTTATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGATGGCGAATCTT
* * *
29606837 ATCTCCATGTATTGGCAATGGGGCAAATTT
66 ATCTCCATGTATCGGCAATGGAGCAGATTT
29606867 AAGTCACCAG
Statistics
Matches: 236, Mismatches: 34, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
176 235 1.00
177 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (176 bp):
AGACTGAAGATTGAAAATCTTATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGATGGCGAATCTT
ATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTGACCTTATCTCTCTGAAGTAGCAAGAGA
GCAGATTGGCGATTGTAGTCTTATATTCCTGATGTAGCAAGGAAGC
Found at i:29606728 original size:88 final size:87
Alignment explanation
Indices: 29606460--29606729 Score: 228
Period size: 88 Copynumber: 3.1 Consensus size: 87
29606450 AGCAGTAGCC
* * *
29606460 GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCATTGGC
1 GAGCAGATTGAAGATGGTGAATCTTATCTCCATGTATC-GCAATGGAGCAGATTTTACCATTGAC
*
29606525 CTTATCTCTCTGAGGTAGCAAGA
65 CTTATCTCTCTGAAGTAGCAAGA
** * * * * * * * * **
29606548 GAGCAGATTGGCGATTGT-AGTCTTATCTTCC-TGAGATAGTAA-GTAAGCAGA-CTGAAAATTG
1 GAGCAGATTGAAGATGGTGAATCTTATC-TCCATG-TATCGCAATG-GAGCAGATTTTACCATTG
** * *
29606609 AAAATTTTATATCTCT-AAGTAG-TAGA
63 ---ACCTTATCTCTCTGAAGTAGCAAGA
*
29606635 GGAGCAGATTGAAGATGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTACCACTGA
1 -GAGCAGATTGAAGATGGTGAATCTTATCTCCATGTATCG-CAATGGAGCAGATTTTACCATTGA
29606700 CCTTATCTCTCTGAAGTAGCAAGA
64 CCTTATCTCTCTGAAGTAGCAAGA
29606724 GAGCAG
1 GAGCAG
29606730 GTTGGCGATT
Statistics
Matches: 131, Mismatches: 37, Indels: 28
0.67 0.19 0.14
Matches are distributed among these distances:
86 7 0.05
87 32 0.24
88 56 0.43
89 30 0.23
90 6 0.05
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (87 bp):
GAGCAGATTGAAGATGGTGAATCTTATCTCCATGTATCGCAATGGAGCAGATTTTACCATTGACC
TTATCTCTCTGAAGTAGCAAGA
Found at i:29607056 original size:20 final size:20
Alignment explanation
Indices: 29607033--29607071 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
29607023 CCAAAACCAA
29607033 AAAATAAAACAAAA-AATAAT
1 AAAATAAAA-AAAATAATAAT
29607053 AAAATAAAAAAAATAATAA
1 AAAATAAAAAAAATAATAA
29607072 AACCAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (20 bp):
AAAATAAAAAAAATAATAAT
Found at i:29608519 original size:31 final size:30
Alignment explanation
Indices: 29608481--29608538 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
29608471 TTATGTAAAT
29608481 ATTTTCTTTGAAATCTATTATATATATATAC
1 ATTTTCTTTGAAATCTATT-TATATATATAC
* * *
29608512 ATTTTCTTTTAAATTTATTTATGTATA
1 ATTTTCTTTGAAATCTATTTATATATA
29608539 ATTTGTTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 7 0.29
31 17 0.71
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (30 bp):
ATTTTCTTTGAAATCTATTTATATATATAC
Found at i:29610994 original size:46 final size:46
Alignment explanation
Indices: 29610926--29611103 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
29610916 GATATTTGGG
29610926 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * *** * * * *
29610972 TATCCGAACTCGTTGAGTTGAGTCTGAGTTCAAGAGATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-A
*
29611019 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * * *
29611065 CGCCCGAGCTCGTTGAGTCGAGTCTGAGTTCACTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
29611104 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
46 71 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:29611088 original size:93 final size:93
Alignment explanation
Indices: 29610924--29611096 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
29610914 AGGATATTTG
* *
29610924 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
*
29610989 TTGAGTCTGAGTTCAAGAGATGTAACTA
66 TCGAGTCTGAGTTCAAGAGATGTAACTA
* * *
29611017 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
29611082 TCGAGTCTGAGTTCA
66 TCGAGTCTGAGTTCA
29611097 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TCGAGTCTGAGTTCAAGAGATGTAACTA
Found at i:29613191 original size:19 final size:19
Alignment explanation
Indices: 29613146--29613206 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 19
29613136 ATAGAAATTT
*
29613146 ATATAAAAA-TAAT-TAAA
1 ATATAAAAATTAATAAAAA
*
29613163 ATGATGAAAATTAATAAAAA
1 AT-ATAAAAATTAATAAAAA
29613183 ATATAAAAATATATATAAGAAA
1 ATATAAAAAT-TA-ATAA-AAA
29613205 AT
1 AT
29613207 TATAGAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
17 2 0.06
18 6 0.17
19 11 0.31
20 7 0.20
21 4 0.11
22 5 0.14
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (19 bp):
ATATAAAAATTAATAAAAA
Found at i:29613678 original size:16 final size:17
Alignment explanation
Indices: 29613646--29613680 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
29613636 AAATTAAAAG
*
29613646 AAGAAAAAGAGATATGA
1 AAGAAAAAGAGAAATGA
29613663 AAGAAAAAGA-AAATGA
1 AAGAAAAAGAGAAATGA
29613679 AA
1 AA
29613681 AAGAGAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.09
Consensus pattern (17 bp):
AAGAAAAAGAGAAATGA
Found at i:29613691 original size:35 final size:36
Alignment explanation
Indices: 29613636--29613722 Score: 90
Period size: 36 Copynumber: 2.4 Consensus size: 36
29613626 TCTTATAATG
* *
29613636 AAATTAAAAGAAGAAAAAGAG-AT-ATGAAAGAAAAAGA
1 AAATTGAAA-AAGAGAAAGAGTATGA-GAAAG-AAAAGA
*
29613673 AAA-TGAAAAAGAGAAAGAGTGTGAGAAAGAAAAGA
1 AAATTGAAAAAGAGAAAGAGTATGAGAAAGAAAAGA
*
29613708 AAATTGAAAAGGAGA
1 AAATTGAAAAAGAGA
29613723 GTGAGATTGA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
35 19 0.44
36 20 0.47
37 4 0.09
ACGTcount: A:0.66, C:0.00, G:0.24, T:0.10
Consensus pattern (36 bp):
AAATTGAAAAAGAGAAAGAGTATGAGAAAGAAAAGA
Found at i:29613727 original size:30 final size:30
Alignment explanation
Indices: 29613668--29613728 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 30
29613658 TATGAAAGAA
*
29613668 AAAGAAAATGAAAAAGAGAAAGAGTGTGAG
1 AAAGAAAATGAAAAAGAGAAAGAGAGTGAG
*
29613698 AAAGAAAA-GAAAATTGA-AAAGGAGAGTGAG
1 AAAGAAAATGAAAA-AGAGAAA-GAGAGTGAG
29613728 A
1 A
29613729 TTGAAGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.61, C:0.00, G:0.30, T:0.10
Consensus pattern (30 bp):
AAAGAAAATGAAAAAGAGAAAGAGAGTGAG
Found at i:29615623 original size:34 final size:34
Alignment explanation
Indices: 29615535--29615624 Score: 92
Period size: 34 Copynumber: 2.6 Consensus size: 34
29615525 ATCTTAGTTA
* *
29615535 TTAAATTAAGTTGCTGGAATCAATATTCAACTTAG
1 TTAATTTAA-TTGCTGGAATAAATATTCAACTTAG
* * * * *
29615570 TTAATTGAGTTGTTAGAATAAATACTT-ATCTTAG
1 TTAATTTAATTGCTGGAATAAATA-TTCAACTTAG
29615604 TTAATTTAATTGCTGGAATAA
1 TTAATTTAATTGCTGGAATAA
29615625 TTTATTGTTA
Statistics
Matches: 43, Mismatches: 11, Indels: 3
0.75 0.19 0.05
Matches are distributed among these distances:
34 35 0.81
35 8 0.19
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (34 bp):
TTAATTTAATTGCTGGAATAAATATTCAACTTAG
Found at i:29615681 original size:9 final size:9
Alignment explanation
Indices: 29615669--29615718 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
29615659 AGTTAGTTAA
*
29615669 GTTTCATGT
1 GTTTAATGT
*
29615678 GTTTAAAGT
1 GTTTAATGT
*
29615687 ATTTAATGT
1 GTTTAATGT
29615696 GTTTAATGT
1 GTTTAATGT
*
29615705 ATTTTAATGT
1 -GTTTAATGT
29615715 GTTT
1 GTTT
29615719 GTTAATGCTT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
9 25 0.76
10 8 0.24
ACGTcount: A:0.24, C:0.02, G:0.18, T:0.56
Consensus pattern (9 bp):
GTTTAATGT
Found at i:29615697 original size:18 final size:19
Alignment explanation
Indices: 29615674--29615718 Score: 74
Period size: 18 Copynumber: 2.4 Consensus size: 19
29615664 GTTAAGTTTC
29615674 ATGTGTTTAAAGTA-TTTA
1 ATGTGTTTAAAGTATTTTA
*
29615692 ATGTGTTTAATGTATTTTA
1 ATGTGTTTAAAGTATTTTA
29615711 ATGTGTTT
1 ATGTGTTT
29615719 GTTAATGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.56
Consensus pattern (19 bp):
ATGTGTTTAAAGTATTTTA
Found at i:29617498 original size:2 final size:2
Alignment explanation
Indices: 29617491--29617516 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
29617481 GTTAAAATTA
29617491 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
29617517 TTACATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29620840 original size:19 final size:19
Alignment explanation
Indices: 29620816--29620859 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
29620806 ATTGTATCAC
29620816 ATATTGTATGTGACTTCAA
1 ATATTGTATGTGACTTCAA
29620835 ATATTGTATGTGACTTCAA
1 ATATTGTATGTGACTTCAA
29620854 ATATTG
1 ATATTG
29620860 CATTAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (19 bp):
ATATTGTATGTGACTTCAA
Found at i:29641217 original size:25 final size:23
Alignment explanation
Indices: 29641189--29641239 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
29641179 ATTATTTACG
*
29641189 ATTTGAATATTTAATTTTAAAAATT
1 ATTTGAATA-TAAATTTT-AAAATT
*
29641214 ATTTTAATATAAATTTTAAAATT
1 ATTTGAATATAAATTTTAAAATT
29641237 ATT
1 ATT
29641240 AAGTCCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 9 0.38
24 7 0.29
25 8 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
ATTTGAATATAAATTTTAAAATT
Found at i:29641292 original size:244 final size:244
Alignment explanation
Indices: 29640840--29641444 Score: 984
Period size: 244 Copynumber: 2.5 Consensus size: 244
29640830 AGTACAATTA
* * * * * ** *
29640840 AAAATATTAATTAGAAGAGTTTCACATTAATAAAAAATTTAATGAAATAATA-ACACCAATAAAA
1 AAAATATTAAATAAAAAAATTTCACATTAATAAGATTTTTAATAAAATAATACA-ACCAATAAAA
*
29640904 TTAATTAATATTTTAATTTAATAAAAATAAAATTATTTACGATTTGAATATTTAATTTTAAAATT
65 TTAATTAATATTTTAATTTAATAAAAATAAAATTATTTACGATTTGAATATTTAATTTTAAAAAT
* *
29640969 TATTTTGATATAAATTTTAAAACTATTAAGTCCAAAAGTTTTGAAGTGAAAAAATCTAATTAAAT
130 TATTTTAATATAAATTTTAAAACTATTAAGTCCAAAAATTTTGAAGTGAAAAAATCTAATTAAAT
29641034 AATGTACGTTGAAAAGGAAAAGTATAATTAAAAATATTAAATAGAAGAAT
195 AATGTACGTTGAAAAGGAAAAGTATAATTAAAAATATTAAATAGAAGAAT
*
29641084 AAAATATTAAATAAAAAAATTTCACATTAATAAGTTTTTTAATAAAATAATACAACCAATAAAAT
1 AAAATATTAAATAAAAAAATTTCACATTAATAAGATTTTTAATAAAATAATACAACCAATAAAAT
29641149 TAATTAATATTTTAATTTAATAAAAATAAAATTATTTACGATTTGAATATTTAATTTTAAAAATT
66 TAATTAATATTTTAATTTAATAAAAATAAAATTATTTACGATTTGAATATTTAATTTTAAAAATT
*
29641214 ATTTTAATATAAATTTTAAAATTATTAAGTCCAAAAATTTTGAAGT-AAAAAATCTAATTAAATA
131 ATTTTAATATAAATTTTAAAACTATTAAGTCCAAAAATTTTGAAGTGAAAAAATCTAATTAAATA
*
29641278 ATGTACGTTTGAAAAGGGAAAGTATAATTAAAAATATTAAATAGAAGAAT
196 ATGTACG-TTGAAAAGGAAAAGTATAATTAAAAATATTAAATAGAAGAAT
29641328 AAAATATTAAAT-AAAAAA-TTCACATTAATAAGATTTTTAATAAAATAATACAACCAATAAAAT
1 AAAATATTAAATAAAAAAATTTCACATTAATAAGATTTTTAATAAAATAATACAACCAATAAAAT
* * * * * *
29641391 TAATTAATATTTTAATTTATTAAAAATAGAATTAATTAAGTTTTAAATATTTAA
66 TAATTAATATTTTAATTTAATAAAAATAAAATTATTTACGATTTGAATATTTAA
29641445 AAATTATTAA
Statistics
Matches: 338, Mismatches: 21, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
242 92 0.27
243 31 0.09
244 214 0.63
245 1 0.00
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.37
Consensus pattern (244 bp):
AAAATATTAAATAAAAAAATTTCACATTAATAAGATTTTTAATAAAATAATACAACCAATAAAAT
TAATTAATATTTTAATTTAATAAAAATAAAATTATTTACGATTTGAATATTTAATTTTAAAAATT
ATTTTAATATAAATTTTAAAACTATTAAGTCCAAAAATTTTGAAGTGAAAAAATCTAATTAAATA
ATGTACGTTGAAAAGGAAAAGTATAATTAAAAATATTAAATAGAAGAAT
Found at i:29643231 original size:6 final size:6
Alignment explanation
Indices: 29643220--29643247 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
29643210 TAATTATTAA
29643220 TTATAT TTATAT TTATAT TTATAT TTAT
1 TTATAT TTATAT TTATAT TTATAT TTAT
29643248 TTGGATTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTATAT
Found at i:29651693 original size:43 final size:43
Alignment explanation
Indices: 29651646--29651768 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 43
29651636 TAACATGTAT
* *
29651646 CGATGCCACTGTCCCACACAGGGTCTTACACG-AAGTCG-ATTAA
1 CGATGCCACTGTCCCACACAAGGTCTTACACGTAA-TCGTAAT-A
* ** * *
29651689 CGATGCCAATGTTTCACACATGGTTTTACACGTAATCGTAATA
1 CGATGCCACTGTCCCACACAAGGTCTTACACGTAATCGTAATA
* * *
29651732 CAATGCCACTGTCCCATACAAGGTCTTACATGTAATC
1 CGATGCCACTGTCCCACACAAGGTCTTACACGTAATC
29651769 ACATCTCAAT
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
43 60 0.94
44 4 0.06
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
CGATGCCACTGTCCCACACAAGGTCTTACACGTAATCGTAATA
Found at i:29653928 original size:64 final size:64
Alignment explanation
Indices: 29653847--29654030 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
29653837 AGACATTATG
* *
29653847 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
29653911 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
29653975 TAA
62 TAA
* * * * *
29653978 AT-TGGCTAGGTCACA-GAGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATG-GGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
29654031 CGAACTATAT
Statistics
Matches: 97, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 23 0.24
65 5 0.05
66 17 0.18
67 32 0.33
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:29660042 original size:25 final size:27
Alignment explanation
Indices: 29660005--29660057 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
29659995 TCAAACATGC
29660005 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
29660031 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
29660057 A
1 A
29660058 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:29670500 original size:16 final size:18
Alignment explanation
Indices: 29670481--29670518 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
29670471 GTTTTAAGAA
29670481 TTATTTG-TCTTAT-TTT
1 TTATTTGTTCTTATGTTT
*
29670497 TTATTTGTTTTTATGTTT
1 TTATTTGTTCTTATGTTT
29670515 TTAT
1 TTAT
29670519 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 5 0.26
18 7 0.37
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.76
Consensus pattern (18 bp):
TTATTTGTTCTTATGTTT
Found at i:29672306 original size:19 final size:19
Alignment explanation
Indices: 29672278--29672342 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
29672268 ATTAAATACG
* *
29672278 AACATTTACATAATCATTT
1 AACATATACATCATCATTT
29672297 AACATATACATCATCATTT
1 AACATATACATCATCATTT
* * *
29672316 TACATACACATCATAATTT
1 AACATATACATCATCATTT
29672335 AATCATAT
1 AA-CATAT
29672343 TGTCCCTCTA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 34 0.89
20 4 0.11
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.38
Consensus pattern (19 bp):
AACATATACATCATCATTT
Found at i:29672994 original size:15 final size:15
Alignment explanation
Indices: 29672974--29673004 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
29672964 TTTCACCCAA
29672974 ATTAAACCTCAACAT
1 ATTAAACCTCAACAT
29672989 ATTAAACCTCAACAT
1 ATTAAACCTCAACAT
29673004 A
1 A
29673005 ACACATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (15 bp):
ATTAAACCTCAACAT
Found at i:29674644 original size:40 final size:40
Alignment explanation
Indices: 29674600--29674738 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
29674590 GGATATAATG
*
29674600 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
29674640 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* * * * *
29674680 ACTCACACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* *
29674719 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
29674739 ATCTTAGTCC
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.37
40 48 0.56
41 6 0.07
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:29674708 original size:79 final size:81
Alignment explanation
Indices: 29674607--29674791 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
29674597 ATGACTCGCT
** *
29674607 CAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTC-GGATCTTAACCC
* * *
29674670 GGGTTTAGTAAC-TCACA
64 GGATATAGTAACTTAACA
* **
29674687 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAACGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTAACCCGG
*
29674751 ATATAGTCACTTAACA
66 ATATAGTAACTTAACA
29674767 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
29674792 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.58
80 35 0.38
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAACA
Found at i:29681483 original size:35 final size:35
Alignment explanation
Indices: 29681456--29681621 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
29681446 CATGGCAAAG
*
29681456 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
29681491 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
29681526 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
29681566 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
29681601 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
29681622 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:29681575 original size:75 final size:75
Alignment explanation
Indices: 29681456--29681626 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
29681446 CATGGCAAAG
** *
29681456 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
29681515 CCATACTGAGC
65 CCATACCGAGC
29681526 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
29681591 CATACCGAGT
66 CATACCGAGC
**
29681601 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
29681627 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:29686798 original size:13 final size:13
Alignment explanation
Indices: 29686780--29686815 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
29686770 TTATTTTAAT
*
29686780 TAATATCATATAA
1 TAATATAATATAA
29686793 TAATATAATATAA
1 TAATATAATATAA
29686806 TAATATAATA
1 TAATATAATA
29686816 ATATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATATAATATAA
Found at i:29688128 original size:26 final size:26
Alignment explanation
Indices: 29688099--29688206 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
29688089 TAATACAAAT
29688099 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
29688125 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
29688151 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
29688177 TGATAATGGTTTAGGTAAATGTTCCC
1 TGATAATGGGTTAGGTAAATGTTCCA
29688203 TGAT
1 TGAT
29688207 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:29691482 original size:31 final size:30
Alignment explanation
Indices: 29691438--29691496 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
29691428 TAATGATATA
*
29691438 TAAAATATTTTAAA-ATTTTAAATATAATAG
1 TAAAATATTTTAAACAATTT-AATATAATAG
*
29691468 TAAATTATATTTAAACAATTTAATATAAT
1 TAAAATAT-TTTAAACAATTTAATATAAT
29691497 GATACATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 7 0.28
31 14 0.56
32 4 0.16
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (30 bp):
TAAAATATTTTAAACAATTTAATATAATAG
Found at i:29691960 original size:18 final size:18
Alignment explanation
Indices: 29691912--29691964 Score: 81
Period size: 17 Copynumber: 2.9 Consensus size: 18
29691902 ATAATCTTCA
29691912 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
29691931 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
29691948 ATGATTGCAATCTTAGA
1 ATGATTGCAATCTTAGA
29691965 AGATATGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 16 0.52
18 11 0.35
19 4 0.13
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:29692280 original size:18 final size:18
Alignment explanation
Indices: 29692257--29692292 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
29692247 TTCCCGGATT
29692257 ATTTTTTT-ATATATTTTA
1 ATTTTTTTAATA-ATTTTA
29692275 ATTTTTTTAATAATTTTA
1 ATTTTTTTAATAATTTTA
29692293 GTATCGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTTTAATAATTTTA
Found at i:29695699 original size:2 final size:2
Alignment explanation
Indices: 29695692--29695730 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
29695682 TACGTAATAC
*
29695692 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
29695731 AATAGTAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:29695887 original size:2 final size:2
Alignment explanation
Indices: 29695882--29695911 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
29695872 TATATGAGAA
29695882 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
29695912 ATAAGTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:29696130 original size:21 final size:20
Alignment explanation
Indices: 29696104--29696144 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
29696094 ACATACCTAT
* *
29696104 ATATATATTAAAGATATATAC
1 ATATATAATAAA-ACATATAC
29696125 ATATATAATAAAACATATAC
1 ATATATAATAAAACATATAC
29696145 CTAGATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.34
Consensus pattern (20 bp):
ATATATAATAAAACATATAC
Found at i:29696274 original size:23 final size:23
Alignment explanation
Indices: 29696247--29696295 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
29696237 TAAAATAAAA
29696247 ATAAAAATATAC-ATGATATATAT
1 ATAAAAATATACGAT-ATATATAT
*
29696270 ATAAACATATACGATATATATAT
1 ATAAAAATATACGATATATATAT
29696293 ATA
1 ATA
29696296 TTAGAAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 22 0.92
24 2 0.08
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.35
Consensus pattern (23 bp):
ATAAAAATATACGATATATATAT
Found at i:29696287 original size:21 final size:22
Alignment explanation
Indices: 29696247--29696293 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 22
29696237 TAAAATAAAA
29696247 ATAAAAATATACATGATATATAT
1 ATAAAAATATACA-GATATATAT
*
29696270 ATAAACATATAC-GATATATAT
1 ATAAAAATATACAGATATATAT
29696291 ATA
1 ATA
29696294 TATTAGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.52
23 11 0.48
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.34
Consensus pattern (22 bp):
ATAAAAATATACAGATATATAT
Found at i:29698302 original size:46 final size:44
Alignment explanation
Indices: 29698243--29698357 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
29698233 ACAGGACAGA
* *
29698243 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
29698289 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
29698333 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
29698358 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:29698338 original size:44 final size:45
Alignment explanation
Indices: 29698243--29698376 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
29698233 ACAGGACAGA
* *
29698243 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
29698289 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
29698333 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
29698377 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:29704258 original size:46 final size:44
Alignment explanation
Indices: 29704199--29704313 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
29704189 ACAGGACAGA
* *
29704199 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
29704245 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
29704289 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
29704314 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:29704294 original size:44 final size:45
Alignment explanation
Indices: 29704199--29704332 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
29704189 ACAGGACAGA
* *
29704199 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
29704245 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
29704289 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
29704333 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:29705865 original size:16 final size:16
Alignment explanation
Indices: 29705844--29705876 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
29705834 TAGCCTATCA
29705844 TTAATTAGAATTTGAT
1 TTAATTAGAATTTGAT
29705860 TTAATTAGAATTTGAT
1 TTAATTAGAATTTGAT
29705876 T
1 T
29705877 AGAACTCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (16 bp):
TTAATTAGAATTTGAT
Found at i:29705963 original size:21 final size:21
Alignment explanation
Indices: 29705920--29705984 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
29705910 GACCTAATAT
* * *
29705920 AAATATTATAAATTTTAATAA
1 AAATATTAAAAATTATAAAAA
* *
29705941 AAATATTAAAAACTGTAAAAA
1 AAATATTAAAAATTATAAAAA
* *
29705962 AAGTATTACAAATTATAAAAA
1 AAATATTAAAAATTATAAAAA
29705983 AA
1 AA
29705985 TTATATGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (21 bp):
AAATATTAAAAATTATAAAAA
Found at i:29706087 original size:14 final size:14
Alignment explanation
Indices: 29706051--29706094 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
29706041 AATTGAGAAA
29706051 TTAAGTGCTGAATT
1 TTAAGTGCTGAATT
* *
29706065 TTTACTGCT-AATT
1 TTAAGTGCTGAATT
29706078 TATAAGTGCTGAATT
1 T-TAAGTGCTGAATT
29706093 TT
1 TT
29706095 TATTAAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
13 5 0.21
14 14 0.58
15 5 0.21
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.48
Consensus pattern (14 bp):
TTAAGTGCTGAATT
Found at i:29717819 original size:3 final size:3
Alignment explanation
Indices: 29717813--29717844 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
29717803 AAAAAATAAA
29717813 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
29717845 CTAATCATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:29728486 original size:3 final size:3
Alignment explanation
Indices: 29728478--29728514 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
29728468 GCCTATACGT
29728478 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
29728515 GTTTATTGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:29728851 original size:32 final size:29
Alignment explanation
Indices: 29728787--29728864 Score: 86
Period size: 32 Copynumber: 2.6 Consensus size: 29
29728777 ATTGAGGGTC
*
29728787 TAATTAAAATTTTTAAATTTTTGTGAGAT
1 TAATTAAAATTTTCAAATTTTTGTGAGAT
* *
29728816 TAATGT-GAATTTTCAAATATTTTAAGTGAGCT
1 TAAT-TAAAATTTTCAAAT-TTTT--GTGAGAT
29728848 TAATTAAAATTTTCAAA
1 TAATTAAAATTTTCAAA
29728865 AAAATTAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
29 14 0.35
30 5 0.12
31 1 0.03
32 20 0.50
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (29 bp):
TAATTAAAATTTTCAAATTTTTGTGAGAT
Found at i:29731826 original size:14 final size:13
Alignment explanation
Indices: 29731794--29731832 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
29731784 TATGTGTTTA
*
29731794 ATTTTTCATTAAT
1 ATTTTTAATTAAT
29731807 -TTTTTAATATAAT
1 ATTTTTAAT-TAAT
29731820 ATTTTTAATTAAT
1 ATTTTTAATTAAT
29731833 GTAATTAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 7 0.30
13 8 0.35
14 8 0.35
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTTTAATTAAT
Found at i:29733093 original size:18 final size:19
Alignment explanation
Indices: 29733061--29733096 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
29733051 AATATTCTTT
*
29733061 TTCTATATTATATTTAAAA
1 TTCTATATTAGATTTAAAA
29733080 TTCTAT-TTAGATTTAAA
1 TTCTATATTAGATTTAAA
29733097 CTTGATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (19 bp):
TTCTATATTAGATTTAAAA
Found at i:29739577 original size:25 final size:25
Alignment explanation
Indices: 29739543--29739592 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
29739533 TTATTCTTCA
29739543 GTTTGCAGATAAATCAACTAAAAAG
1 GTTTGCAGATAAATCAACTAAAAAG
29739568 GTTTGCAGATAAATCAACTAAAAAG
1 GTTTGCAGATAAATCAACTAAAAAG
29739593 CAGGAGGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (25 bp):
GTTTGCAGATAAATCAACTAAAAAG
Found at i:29749301 original size:19 final size:20
Alignment explanation
Indices: 29749269--29749310 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
29749259 GGAAAAAAAT
29749269 ATTTGAGATGGCTAGGAAGA
1 ATTTGAGATGGCTAGGAAGA
*
29749289 ATTT-AGATTGCTAGGAAGA
1 ATTTGAGATGGCTAGGAAGA
29749308 ATT
1 ATT
29749311 CTAAAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.36, C:0.05, G:0.29, T:0.31
Consensus pattern (20 bp):
ATTTGAGATGGCTAGGAAGA
Found at i:29749469 original size:16 final size:16
Alignment explanation
Indices: 29749448--29749480 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
29749438 GTTTGGCATC
*
29749448 TTAATTTTGCATTCAA
1 TTAATTTTACATTCAA
29749464 TTAATTTTACATTCAA
1 TTAATTTTACATTCAA
29749480 T
1 T
29749481 CTAAATTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (16 bp):
TTAATTTTACATTCAA
Found at i:29749589 original size:8 final size:8
Alignment explanation
Indices: 29749576--29749605 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
29749566 AAAACAATCG
29749576 TCAATAAA
1 TCAATAAA
*
29749584 TCAATATA
1 TCAATAAA
29749592 TCAATAAA
1 TCAATAAA
29749600 TCAATA
1 TCAATA
29749606 TACATAATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (8 bp):
TCAATAAA
Found at i:29749597 original size:16 final size:16
Alignment explanation
Indices: 29749576--29749607 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
29749566 AAAACAATCG
29749576 TCAATAAATCAATATA
1 TCAATAAATCAATATA
29749592 TCAATAAATCAATATA
1 TCAATAAATCAATATA
29749608 CATAATGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (16 bp):
TCAATAAATCAATATA
Found at i:29750305 original size:19 final size:20
Alignment explanation
Indices: 29750273--29750315 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
29750263 GGAAAATAAT
*
29750273 ATTTGGGATGGTTAGGAAGA
1 ATTTGGGATGGTTAGAAAGA
*
29750293 ATTT-GGATTGTTAGAAAGA
1 ATTTGGGATGGTTAGAAAGA
29750312 ATTT
1 ATTT
29750316 TAAAAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.37
Consensus pattern (20 bp):
ATTTGGGATGGTTAGAAAGA
Found at i:29751091 original size:45 final size:45
Alignment explanation
Indices: 29751034--29751124 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
29751024 ATGAAATTAT
* *
29751034 AATAAAATGCCTTGAATTACATTTAGCCTGAATGAAGAAAACATA
1 AATAAAAGGCCTTGAACTACATTTAGCCTGAATGAAGAAAACATA
29751079 AATAAAAGGCCTTGAACTACATTTAGCCTGAATGAAGAAAACATA
1 AATAAAAGGCCTTGAACTACATTTAGCCTGAATGAAGAAAACATA
29751124 A
1 A
29751125 TTGGGTTGCT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.24
Consensus pattern (45 bp):
AATAAAAGGCCTTGAACTACATTTAGCCTGAATGAAGAAAACATA
Found at i:29752362 original size:19 final size:20
Alignment explanation
Indices: 29752330--29752371 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
29752320 GTAAAACAAT
*
29752330 ATTTGGGATGGTTATAAAGA
1 ATTTGGGATGGTTAGAAAGA
*
29752350 ATTT-GGATTGTTAGAAAGA
1 ATTTGGGATGGTTAGAAAGA
29752369 ATT
1 ATT
29752372 CTAAAAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (20 bp):
ATTTGGGATGGTTAGAAAGA
Found at i:29756968 original size:46 final size:45
Alignment explanation
Indices: 29756916--29757096 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 45
29756906 TGGTTGAGCA
29756916 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
29756962 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
29757007 CATCCGAGCTCGTTGAGTTGAGTCGAGTCCGAGTTCACTTATGGATGAGAATG
1 --TCCGAACTCGTTGAG-T---T-GAGTCCGAGTTCACTTATGGATG-GAATG
* *
29757060 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
29757097 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 28
0.74 0.07 0.19
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 48 0.43
47 14 0.13
48 1 0.01
50 1 0.01
51 15 0.14
52 12 0.11
53 3 0.03
55 5 0.05
56 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:29759852 original size:45 final size:44
Alignment explanation
Indices: 29759691--29759904 Score: 209
Period size: 46 Copynumber: 4.7 Consensus size: 44
29759681 ATGAGATTTG
* * * *
29759691 TGTGCCAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGAGA
1 TGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA
* * * *
29759737 CGAGGGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTACGA
1 --TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCG-A-GA
*
29759786 -GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA
*
29759829 TGTTGCCAGTGTCAA-ACATGTCTGGGACATGCGTCGG-CTACGAGA
1 TG-TGCCAGTGT-AAGACATGTCTGGGACATGCATCGGCCT-CGAGA
* *
29759874 TGTGCTAGTGTAAGACATGTCTAGGACATGC
1 TGTGCCAGTGTAAGACATGTCTGGGACATGC
29759905 GTCAGCACGG
Statistics
Matches: 144, Mismatches: 14, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
43 4 0.03
44 28 0.19
45 38 0.26
46 44 0.31
47 14 0.10
48 14 0.10
49 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA
Found at i:29759901 original size:44 final size:45
Alignment explanation
Indices: 29759742--29759907 Score: 189
Period size: 45 Copynumber: 3.7 Consensus size: 45
29759732 TGAGACGAGG
* * * *
29759742 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTACGA-G-A
1 GCCAGTGTAAGACATGTCTGGGACATGCGTCGGCC-TCG-A-GATGTT
*
29759788 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTT
1 GCCAGTGTAAGACATGTCTGGGACATGCGTCGGCCTCGAGATGTT
29759833 GCCAGTGTCAA-ACATGTCTGGGACATGCGTCGG-CTACGAGATG-T
1 GCCAGTGT-AAGACATGTCTGGGACATGCGTCGGCCT-CGAGATGTT
* *
29759877 GCTAGTGTAAGACATGTCTAGGACATGCGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCGTC
29759908 AGCACGGTTA
Statistics
Matches: 109, Mismatches: 6, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
43 4 0.04
44 31 0.28
45 38 0.35
46 36 0.33
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCGTCGGCCTCGAGATGTT
Found at i:29763496 original size:46 final size:46
Alignment explanation
Indices: 29763322--29763501 Score: 152
Period size: 46 Copynumber: 3.8 Consensus size: 46
29763312 GGTTGAGCAT
* * *
29763322 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGC
* * * *
29763368 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTA-ACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGA--ACGC
*
29763413 ATCCGAGCTCGTTGAGTTGAGTCGAGTCTGAGTTCACTTATGGATGAGAACGC
1 --CCGAACTCGTTGAGTTGAGTC----C-GAGTTCACTTATGGATGAGAACGC
* *
29763466 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
29763502 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 28
0.73 0.08 0.19
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 41 0.38
47 20 0.19
51 21 0.19
52 6 0.06
53 5 0.05
54 1 0.01
55 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGC
Found at i:29773747 original size:30 final size:30
Alignment explanation
Indices: 29773711--29773771 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
29773701 ATTTTATTGT
* *
29773711 TAATTTTTTTATTATTTTAAAGACATTTGC
1 TAATTTTGTTACTATTTTAAAGACATTTGC
* *
29773741 TAATTTTGTTACTATTTTAGAGGCATTTGC
1 TAATTTTGTTACTATTTTAAAGACATTTGC
29773771 T
1 T
29773772 TGTTAAATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.08, G:0.11, T:0.54
Consensus pattern (30 bp):
TAATTTTGTTACTATTTTAAAGACATTTGC
Found at i:29774895 original size:16 final size:17
Alignment explanation
Indices: 29774876--29774918 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
29774866 ATTTAGAAAC
*
29774876 TTTTATTTTT-AGTATA
1 TTTTATTTTTAAATATA
*
29774892 TTTTATCTTTTAAATATT
1 TTTTAT-TTTTAAATATA
29774910 TTTTATTTT
1 TTTTATTTT
29774919 GATTCATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 6 0.26
17 7 0.30
18 10 0.43
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTATTTTTAAATATA
Found at i:29775297 original size:57 final size:57
Alignment explanation
Indices: 29775234--29775347 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
29775224 ATAACTTTCC
*
29775234 TTTTTTGTGCATAAAAAGTCCTAATTAGCTATTTTGTAGGAATGTCATCCGTATAAA
1 TTTTTTGTGCATAAAAAGTCCTAATTAGCTATTTTCTAGGAATGTCATCCGTATAAA
* *
29775291 TTTTTTGTGCATAAAAAGTCTTAATTAGCTATTTTCTAGGAATGTCATTCGTATAAA
1 TTTTTTGTGCATAAAAAGTCCTAATTAGCTATTTTCTAGGAATGTCATCCGTATAAA
29775348 GTTTGAACAT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (57 bp):
TTTTTTGTGCATAAAAAGTCCTAATTAGCTATTTTCTAGGAATGTCATCCGTATAAA
Found at i:29786675 original size:16 final size:16
Alignment explanation
Indices: 29786638--29786675 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
29786628 ATTTCTTTTA
29786638 TTTATATCTTTTTAAT
1 TTTATATCTTTTTAAT
*
29786654 TATATAT-TTTTTAAGT
1 TTTATATCTTTTTAA-T
29786670 TTTATA
1 TTTATA
29786676 ATTTATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (16 bp):
TTTATATCTTTTTAAT
Found at i:29787768 original size:2 final size:2
Alignment explanation
Indices: 29787761--29787788 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
29787751 CTTAGACCGC
29787761 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29787789 TAATTACTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29789857 original size:21 final size:21
Alignment explanation
Indices: 29789823--29789869 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
29789813 CATGTTAATA
29789823 TATTTTTATCATGTTTT-TAT
1 TATTTTTATCATGTTTTGTAT
* *
29789843 TATTTTTAATTATGTTTTGTTT
1 TATTTTT-ATCATGTTTTGTAT
29789865 TATTT
1 TATTT
29789870 ATTTTATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 7 0.30
21 9 0.39
22 7 0.30
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.72
Consensus pattern (21 bp):
TATTTTTATCATGTTTTGTAT
Found at i:29790934 original size:12 final size:12
Alignment explanation
Indices: 29790900--29790947 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
29790890 AGTACCTAAT
29790900 CAGTAATCAGTAA
1 CAGTAA-CAGTAA
* * *
29790913 CGGTAGCAGTAG
1 CAGTAACAGTAA
*
29790925 TAGTAACAGTAA
1 CAGTAACAGTAA
29790937 CAGTAACAGTA
1 CAGTAACAGTA
29790948 TTCAACACAC
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
12 23 0.85
13 4 0.15
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (12 bp):
CAGTAACAGTAA
Found at i:29790947 original size:18 final size:18
Alignment explanation
Indices: 29790900--29790947 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
29790890 AGTACCTAAT
* *
29790900 CAGTAATCAGTAACGGTAG
1 CAGTAA-CAGTAACAGTAA
**
29790919 CAGTAGTAGTAACAGTAA
1 CAGTAACAGTAACAGTAA
29790937 CAGTAACAGTA
1 CAGTAACAGTA
29790948 TTCAACACAC
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (18 bp):
CAGTAACAGTAACAGTAA
Found at i:29791022 original size:39 final size:39
Alignment explanation
Indices: 29790933--29791025 Score: 143
Period size: 39 Copynumber: 2.4 Consensus size: 39
29790923 AGTAGTAACA
* *
29790933 GTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCT
1 GTAACAGTAACGGTATTCAACACACAAAGTGCTGAATCG
*
29790972 GTAACAGTAACGGTATTCGACACACAAAGTG-TCGAATCG
1 GTAACAGTAACGGTATTCAACACACAAAGTGCT-GAATCG
29791011 GTAACAGTAACGGTA
1 GTAACAGTAACGGTA
29791026 ACAATAACAG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.02
39 49 0.98
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (39 bp):
GTAACAGTAACGGTATTCAACACACAAAGTGCTGAATCG
Found at i:29792046 original size:12 final size:12
Alignment explanation
Indices: 29792029--29792059 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
29792019 CAATTTTTCA
29792029 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
29792041 TTTTTCTTTCTC
1 TTTTTCTTTCCC
29792053 TTTTTCT
1 TTTTTCT
29792060 CCCTGTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:29792361 original size:33 final size:32
Alignment explanation
Indices: 29792303--29792365 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 32
29792293 ATTATTTAAT
29792303 TAATAAATATCTCTTAATTATAATAATAATAAA
1 TAATAAATATCTCTTAATTATAATAA-AATAAA
29792336 TAATAAATATCTAC-TAATT-TAAATAAAATA
1 TAATAAATATCT-CTTAATTAT-AATAAAATA
29792366 TTATAATTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
32 5 0.18
33 22 0.79
34 1 0.04
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (32 bp):
TAATAAATATCTCTTAATTATAATAAAATAAA
Found at i:29801406 original size:28 final size:28
Alignment explanation
Indices: 29801368--29801442 Score: 132
Period size: 28 Copynumber: 2.6 Consensus size: 28
29801358 TTGTACATTT
*
29801368 AAATTATAGTCTCTTATTTCTATTTCTAG
1 AAATT-TAGTCCCTTATTTCTATTTCTAG
29801397 AAATTTAGTCCCTTATTTCTATTTCTAG
1 AAATTTAGTCCCTTATTTCTATTTCTAG
29801425 AAATTTAGTCCCTTATTT
1 AAATTTAGTCCCTTATTT
29801443 AAAAAAAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 40 0.89
29 5 0.11
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.51
Consensus pattern (28 bp):
AAATTTAGTCCCTTATTTCTATTTCTAG
Found at i:29801673 original size:29 final size:29
Alignment explanation
Indices: 29801635--29801699 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
29801625 CAATTGTATT
*
29801635 TAAAATTTTA-AATCTAAAAAGTAAAAAGA
1 TAAAATTTTAGAA-ATAAAAAGTAAAAAGA
* *
29801664 TAAATTTTTAGAAATAAAAAGTAAAAATA
1 TAAAATTTTAGAAATAAAAAGTAAAAAGA
*
29801693 CAAAATT
1 TAAAATT
29801700 CCAAATCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 28 0.93
30 2 0.07
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (29 bp):
TAAAATTTTAGAAATAAAAAGTAAAAAGA
Found at i:29801823 original size:24 final size:25
Alignment explanation
Indices: 29801790--29801850 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
29801780 AAAATTATAT
*
29801790 TTAAAA-ATTAAACAAT-TGAATTA
1 TTAAAATATTAAACAATATAAATTA
*
29801813 TTAAAATATT-AACTATATAAATTA
1 TTAAAATATTAAACAATATAAATTA
*
29801837 TAAAAATATGTAAA
1 TTAAAATAT-TAAA
29801851 AACTCATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 11 0.35
24 17 0.55
25 1 0.03
26 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (25 bp):
TTAAAATATTAAACAATATAAATTA
Found at i:29803565 original size:33 final size:33
Alignment explanation
Indices: 29803509--29803593 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 33
29803499 AAACTTGGGA
*
29803509 GGACAGACA--AACAACCTAGGACAAAG-AAAT
1 GGACAGACATTAACAACCTAAGACAAAGAAAAT
29803539 GGACAGACATTAAGCAACCTAAGACAAAGAAAAT
1 GGACAGACATTAA-CAACCTAAGACAAAGAAAAT
*
29803573 -GACAGACATTAATCCACCTAA
1 GGACAGACATTAA-CAACCTAA
29803594 ATAATAATGA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
30 9 0.19
32 2 0.04
33 33 0.69
34 4 0.08
ACGTcount: A:0.51, C:0.21, G:0.16, T:0.12
Consensus pattern (33 bp):
GGACAGACATTAACAACCTAAGACAAAGAAAAT
Found at i:29805658 original size:19 final size:19
Alignment explanation
Indices: 29805634--29805673 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
29805624 TCAAGTCAGT
*
29805634 AAATAATTTA-AAATTAAAA
1 AAATAAATTATAAA-TAAAA
29805653 AAATAAATTATAAATAAAA
1 AAATAAATTATAAATAAAA
29805672 AA
1 AA
29805674 TAAGTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
AAATAAATTATAAATAAAA
Found at i:29810556 original size:33 final size:31
Alignment explanation
Indices: 29810518--29810588 Score: 74
Period size: 31 Copynumber: 2.2 Consensus size: 31
29810508 GGTATAGTAA
*
29810518 TAAAATAATGATATACGAA-AATAATACTATATG
1 TAAAATAATG-TATAC-AAGAATAA-AATATATG
*
29810551 TAAAAT-GTGTATACAAGAATAAAATATATG
1 TAAAATAATGTATACAAGAATAAAATATATG
29810581 TGAAAATA
1 T-AAAATA
29810589 TTAATGATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
30 10 0.30
31 15 0.45
32 2 0.06
33 6 0.18
ACGTcount: A:0.55, C:0.04, G:0.11, T:0.30
Consensus pattern (31 bp):
TAAAATAATGTATACAAGAATAAAATATATG
Found at i:29810572 original size:31 final size:31
Alignment explanation
Indices: 29810529--29810587 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
29810519 AAAATAATGA
*
29810529 TATACGAAAATAATACTATATGT-AAAATGTG
1 TATACGAAAATAA-AATATATGTGAAAATGTG
29810560 TATAC-AAGAATAAAATATATGTGAAAAT
1 TATACGAA-AATAAAATATATGTGAAAAT
29810588 ATTAATGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 10 0.40
31 15 0.60
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.31
Consensus pattern (31 bp):
TATACGAAAATAAAATATATGTGAAAATGTG
Found at i:29810814 original size:24 final size:25
Alignment explanation
Indices: 29810767--29810817 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
29810757 ACAAATGTTC
*
29810767 ATAATATATAAAACATACATATAAT
1 ATAATATATAAAACATACACATAAT
**
29810792 ATAATAT-TAAAACATTTACATAAT
1 ATAATATATAAAACATACACATAAT
29810816 AT
1 AT
29810818 GTACACACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATATATAAAACATACACATAAT
Found at i:29810924 original size:21 final size:21
Alignment explanation
Indices: 29810890--29810929 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
29810880 AAGATATACT
*
29810890 TATATAAACATATATTAAAGA
1 TATATAAACATATAATAAAGA
* *
29810911 TATATACATATATAATAAA
1 TATATAAACATATAATAAA
29810930 ATACATGAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
TATATAAACATATAATAAAGA
Found at i:29813057 original size:13 final size:13
Alignment explanation
Indices: 29813029--29813063 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
29813019 TGAGTTGATT
29813029 TTTGAAAACAGAA
1 TTTGAAAACAGAA
*
29813042 TTTGCAAAACAGAT
1 TTTG-AAAACAGAA
29813056 TTTGAAAA
1 TTTGAAAA
29813064 TACCTCGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (13 bp):
TTTGAAAACAGAA
Found at i:29813118 original size:88 final size:86
Alignment explanation
Indices: 29812995--29813306 Score: 380
Period size: 88 Copynumber: 3.6 Consensus size: 86
29812985 ACGTGAGCAA
** *
29812995 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAAAACAGATTTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG-AAAACAGATTTTG
*
29813060 AAAATACCTCGGCACGTGACCTG
65 AAAATACCTCAGCA-GTGACCTG
* * * *
29813083 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAAACATTAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CAGAAATTGAAAACAGATT--T
29813148 TGAAAATACCTCAGCA-TG-CCTCG
63 TGAAAATACCTCAGCAGTGACCT-G
* *
29813171 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGATGAACAGAAATTGAAAAACAGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTG-AAAACAGATTTT
* *
29813235 GAAAAGACCTCAGCATGTGAGCTG
64 GAAAATACCTCAGCA-GTGACCTG
* * *
29813259 GGGCTCAACTCACCTCTCGCGATATGAGTTGAATTTTG-AAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
29813307 AAAACATCAG
Statistics
Matches: 195, Mismatches: 19, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
86 16 0.08
87 26 0.13
88 123 0.63
89 14 0.07
90 16 0.08
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAACAGATTTTGA
AAATACCTCAGCAGTGACCTG
Found at i:29817024 original size:26 final size:26
Alignment explanation
Indices: 29816987--29817070 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
29816977 TGATACAAAT
* *
29816987 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29817013 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29817039 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29817065 TGATAA
1 TGATAA
29817071 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:29818584 original size:26 final size:26
Alignment explanation
Indices: 29818555--29818607 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29818545 TTTACAGTTT
29818555 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
29818581 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
29818607 T
1 T
29818608 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:29828924 original size:24 final size:25
Alignment explanation
Indices: 29828877--29828927 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
29828867 ACACATGTTC
*
29828877 ATAATATATAAAACATACATATAAT
1 ATAATATATAAAACATACACATAAT
**
29828902 ATAATAT-TAAAACATTTACATAAT
1 ATAATATATAAAACATACACATAAT
29828926 AT
1 AT
29828928 GTACACACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATATATAAAACATACACATAAT
Found at i:29829034 original size:21 final size:21
Alignment explanation
Indices: 29829000--29829039 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
29828990 AAGATATACT
*
29829000 TATATAAACATATATTAAAGA
1 TATATAAACATATAATAAAGA
* *
29829021 TATATACATATATAATAAA
1 TATATAAACATATAATAAA
29829040 ATACATGAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
TATATAAACATATAATAAAGA
Found at i:29831162 original size:13 final size:13
Alignment explanation
Indices: 29831134--29831168 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
29831124 TGAGTTGATT
29831134 TTTGAAAACAGAA
1 TTTGAAAACAGAA
*
29831147 TTTGCAAAACAGAT
1 TTTG-AAAACAGAA
29831161 TTTGAAAA
1 TTTGAAAA
29831169 TACCTCGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (13 bp):
TTTGAAAACAGAA
Found at i:29831223 original size:88 final size:85
Alignment explanation
Indices: 29831100--29831410 Score: 369
Period size: 88 Copynumber: 3.6 Consensus size: 85
29831090 ACGTGAGCAA
** *
29831100 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAAAACAGATTTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG-AAAACA-ATTTTG
*
29831165 AAAATACCTCGGCACGTGACCTG
64 AAAATACCTCAGCA-GTGACCTG
* * *
29831188 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAAACATTAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CAGAAATTGAAAACA-ATT--T
29831253 TGAAAATACCTCAGCA-TG-CCTCG
62 TGAAAATACCTCAGCAGTGACCT-G
* *
29831276 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGATGAACAGAAATTGAAAAACAAATTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTG-AAAACAATTTTG
* *
29831340 AAAAGACCTCAGCATGTGAGCTG
64 AAAATACCTCAGCA-GTGACCTG
* * *
29831363 GGGCTCAACTCACCTCTCGCGATATGAGTTGAATTTTG-AAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
29831411 AAAACATCAG
Statistics
Matches: 195, Mismatches: 18, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
85 16 0.08
86 9 0.05
87 52 0.27
88 95 0.49
89 7 0.04
90 16 0.08
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (85 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAACAATTTTGAA
AATACCTCAGCAGTGACCTG
Found at i:29835124 original size:26 final size:26
Alignment explanation
Indices: 29835087--29835170 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
29835077 TGATACAAAT
* *
29835087 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29835113 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29835139 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
29835165 TGATAA
1 TGATAA
29835171 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:29836686 original size:26 final size:26
Alignment explanation
Indices: 29836657--29836709 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29836647 TTTACAGTTT
29836657 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
29836683 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
29836709 T
1 T
29836710 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:29847027 original size:24 final size:25
Alignment explanation
Indices: 29846980--29847030 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
29846970 ACACATGTTC
*
29846980 ATAATATATAAAACATACATATAAT
1 ATAATATATAAAACATACACATAAT
**
29847005 ATAATAT-TAAAACATTTACATAAT
1 ATAATATATAAAACATACACATAAT
29847029 AT
1 AT
29847031 GTACACACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATATATAAAACATACACATAAT
Done.